AlfalfaGEDB | MS.gene27116

M. sativa cultivar XinJiangDaYe / MS.gene27116

KEGG: K14172
GO: -
PFAM: PF00504.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27116.t1	KEH40268.1	95.7	232	8	1	1	232	1	230	6.70E-121	443.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27116.t1	Q9C9K1	69.7	221	62	2	16	232	9	228	4.4e-81	302.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27116.t1	A0A072VFP6	95.7	232	8	1	1	232	1	230	4.8e-121	443.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene27116	0.877363	6.67E-69	-1.69E-46
MS.gene049171	MS.gene27116	0.918926	8.52E-87	-1.69E-46
MS.gene049173	MS.gene27116	0.859727	3.39E-63	-1.69E-46
MS.gene049217	MS.gene27116	0.922532	8.70E-89	-1.69E-46
MS.gene049222	MS.gene27116	0.934179	6.02E-96	-1.69E-46
MS.gene049232	MS.gene27116	0.8828	7.69E-71	-1.69E-46
MS.gene049285	MS.gene27116	0.916334	2.02E-85	-1.69E-46
MS.gene049312	MS.gene27116	-0.801291	9.65E-49	-1.69E-46
MS.gene049320	MS.gene27116	0.906389	1.56E-80	-1.69E-46
MS.gene04938	MS.gene27116	0.803222	3.86E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27116.t1	MTR_1g026550	95.690	232	8	1	1	232	1	230	4.34e-148	412
MS.gene27116.t1	MTR_1g026550	95.690	232	8	1	1	232	1	230	2.24e-146	411
MS.gene27116.t1	MTR_5g097280	40.127	157	89	4	77	232	16	168	1.95e-30	114
MS.gene27116.t1	MTR_6g011870	43.624	149	79	4	85	232	24	168	1.49e-28	108
MS.gene27116.t1	MTR_4g094605	43.333	150	79	4	85	232	24	169	1.62e-28	108
MS.gene27116.t1	MTR_6g012080	47.581	124	61	3	109	232	49	168	4.14e-28	107
MS.gene27116.t1	MTR_6g011880	42.953	149	80	4	85	232	24	168	4.41e-28	107
MS.gene27116.t1	MTR_6g012110	46.923	130	65	3	103	232	43	168	7.70e-28	107
MS.gene27116.t1	MTR_6g011890	47.619	126	62	3	107	232	47	168	8.73e-28	107
MS.gene27116.t1	MTR_2g081090	42.636	129	71	2	104	232	14	139	1.89e-27	105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27116.t1	AT1G76570	73.267	202	47	2	37	232	28	228	9.04e-106	308
MS.gene27116.t1	AT3G27690	46.269	134	68	3	99	232	40	169	2.96e-32	118
MS.gene27116.t1	AT3G27690	46.269	134	68	3	99	232	72	201	3.23e-32	119
MS.gene27116.t1	AT2G05100	40.764	157	88	4	77	232	16	168	5.00e-31	115
MS.gene27116.t1	AT2G05070	45.522	134	69	3	99	232	39	168	7.97e-31	114
MS.gene27116.t1	AT2G05100	45.522	134	69	3	99	232	39	168	3.16e-30	114
MS.gene27116.t1	AT1G29920	45.802	131	67	3	102	232	43	169	3.09e-28	108
MS.gene27116.t1	AT1G29910	45.802	131	67	3	102	232	43	169	3.09e-28	108
MS.gene27116.t1	AT1G29930	45.802	131	67	3	102	232	43	169	3.26e-28	108
MS.gene27116.t1	AT2G34430	44.853	136	71	3	97	232	37	168	4.03e-28	107

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Find 70 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGATGAAGAAGAGGA+AGG	0.602803	1.1:+59596	None:intergenic
AAAGCAGTTTACAGAGGAGA+GGG	0.566780	1.1:+59550	None:intergenic
AAATATTTCTGCAGTTCCAC+TGG	0.436745	1.1:+59092	None:intergenic
AACGAAACAAGATGAAGAAG+AGG	0.542469	1.1:+59592	None:intergenic
ACAAAACTCCTCTAAATTCA+AGG	0.426529	1.1:-59360	MS.gene27116:CDS
ACTTTGTTGAACCTGTTTGG+TGG	0.577642	1.1:-58871	MS.gene27116:CDS
AGATGTTGTGTTCTGGGTTT+TGG	0.172127	1.1:+59524	None:intergenic
AGCCTGAGCCTTGAATTTAG+AGG	0.441217	1.1:+59352	None:intergenic
AGTGAAGGCCTGGGATGCCA+AGG	0.580571	1.1:+56859	None:intergenic
AGTTCCCCAATGAGATATGA+TGG	0.482903	1.1:+59158	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAAACTCCTCTAAATTCA+AGG	-	chr1.1:57075-57094	MS.gene27116:intron	30.0%
ACATAGATGCCAAATATCAT+CGG	-	chr1.1:58058-58077	MS.gene27116:intron	30.0%
AGCTAAATTTATTCTCATGC+AGG	+	chr1.1:59440-59459	None:intergenic	30.0%
ATAACATAACCATAATGGCT+TGG	+	chr1.1:57379-57398	None:intergenic	30.0%
ATAGATGCCAAATATCATCA+GGG	-	chr1.1:58060-58079	MS.gene27116:intron	30.0%
CATATTTCCCTGATGATATT+TGG	+	chr1.1:58070-58089	None:intergenic	30.0%
CATCTTGTAATGAGAAAGAA+AGG	+	chr1.1:57998-58017	None:intergenic	30.0%
CCAAAAGCTGAAAATGTTTA+AGG	+	chr1.1:57206-57225	None:intergenic	30.0%
CCTTTCTAATTAGTGGAAAA+TGG	+	chr1.1:57694-57713	None:intergenic	30.0%
CTCTTTATAAGACTTAGAGT+GGG	+	chr1.1:58835-58854	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	56806	59651	56806	ID=MS.gene27116
chr1.1	mRNA	56806	59651	56806	ID=MS.gene27116.t1;Parent=MS.gene27116
chr1.1	exon	59332	59651	59332	ID=MS.gene27116.t1.exon1;Parent=MS.gene27116.t1
chr1.1	CDS	59332	59651	59332	ID=cds.MS.gene27116.t1;Parent=MS.gene27116.t1
chr1.1	exon	59089	59238	59089	ID=MS.gene27116.t1.exon2;Parent=MS.gene27116.t1
chr1.1	CDS	59089	59238	59089	ID=cds.MS.gene27116.t1;Parent=MS.gene27116.t1
chr1.1	exon	58847	58979	58847	ID=MS.gene27116.t1.exon3;Parent=MS.gene27116.t1
chr1.1	CDS	58847	58979	58847	ID=cds.MS.gene27116.t1;Parent=MS.gene27116.t1
chr1.1	exon	56806	56898	56806	ID=MS.gene27116.t1.exon4;Parent=MS.gene27116.t1
chr1.1	CDS	56806	56898	56806	ID=cds.MS.gene27116.t1;Parent=MS.gene27116.t1

Gene Sequence

>MS.gene27116

ATGGTGTGGCTTCAACTTCAATCAGTGACGTGTCCTTCCTCTTCTTCATCTTGTTTCGTTAGTGGCTCTAGTCGCTGCTCCCTCTCCTCTGTAAACTGCTTTGCCCCAAAACCCAGAACACAACATCTCATCTGCAATGCTTCATGGCAAGAGCTTGCTGGAGTTTTACTATTCTCAGCGATTCCTTTCACTGCTGTCAAAGCTATAGCTAACAGTCCATTAGGGGAGTCACTTCAAAGAAAAATGGAAGAGACTAAGCAACTTGCTGTACAAAACTCCTCTAAATTCAAGGCTCAGGCTGCCAAGGCCAGAAAACAGAGGTAGTGACCGATTTCAATTATTTTTATTCTCATTGCTGCTGCTGCTGCATCAATGAATTGTGCTCATTCCTATCATTCCTTAAACATTTTCAGCTTTTGGTATGGACAAGGTCGGCCTCGTTGGCTTGGCCCTATTTCGTATGATGGCTACCCATCATATCTCATTGGGGAACTGCCTGGGGATTATGGCTTTGACATTGCTGGCCTTGCCAAGGATCCAGTGGAACTGCAGAAATATTTCAAGTACCACCCAAGCCATTATGGTTATGTTATGTTATTATTATTGCTTCTTGAATTTTTCATTTAAATAGTTAAATAGTTAACTTGTCCTTTCATTTAATTTACCATTAAGCTTTGAGATATTGCATGCTCGCTGGGCTATGCTTGCATCTGTTGGTGCTCTCATTCCTGAGTTATTAGACCTATTGGGAGTCTTTCACTTTGTTGAACCTGTTTGGTGGCGCGTTGGTTATTCCAAGCTCCAGGTTAGCATGTTCTATCTCTCTTATCTATTTGTTCACCTTTATCTTACACAAGTTTGTTCAATTAATAATATAATTACAGTCCATTTTCCACTAATTAGAAAGGGAAAATTGTGTCTTGTTTAACAATTTCAGAAAGCTACAAATGCTCTATGACATTGCTAGTTTGCAAATGAGTATTCCCATGCTGATCCTGAAAAGTGTCATGGGAGTTCAAAAATTAATTGTAGTTTTTCACTTCTTGTGTCTTGTAGTAGTTTGTTTGATCATATTGTTGTTTTTATCTCTCATTTCATCGACAATAGGGTAGCATTCATTGTAAAAGTTTACCGGCATGAATAAGGAATTTTTTTAATGATTATGGGAGATGCAAATATAACATGGCAACCTTTCTTTCTCATTACAAGATGATCTCATGTTCTTAAGAAAAAGAAAATCTATACGCTAAGAACATAGATGCCAAATATCATCAGGGAAATATGTCTTTGTCCGCCTACCACTGCATAGCTAACTGATAAGAGTTTATAAAGAGAATTGATAGGCTCATAAGGTGAGGAGTGCCTCTCTTTATAACTAACTGACAAGAGTTTATAAAGAGAATTGATAGGCTCAATAGGGTAGCATTCATTGTAAAAGTTTACCGGCATGAATTTGGTCATCTCCCTTTTTTTAATGATTATGGGAGATACAAATATAACATGGCAACCTTTCTTTCTCATTACAAGATGATCTCATGTTCTTAAGAAAAAAGAAAATCTATACGCTAAGAACATAGATGCCAAATATCATCGGGGAAATATGTCTTTGTCCGCCTACCACTGCATAACTAACTGATAAGAGTTTATAAAGAGAATTGATAGGCTCATAAGGTGAGGAGTGCCTCTCTTTATAAACTCATATCAAGAGTCCTATATTTCCAATGTGGGACTTGGGTTTTTTCCAATATTTGTCAACGGTACTACGACCATTTGAAGAAATTAAGAAAATAGTAATCAGTTTTGATTATCAATTGTGTGCTTTGTTATGGGCAGCATTTTGAACGCAACATCTTAGCAAACATAATAAGTTTTCAAACCTGTTATATGGTGGGGAAAAAGGGTCAAAGTGTCTTTGCTAACGATATTCAAAAGTTCGACAACACTACATAGAATTGGCCACTCTTAAATAATATTACCGTGATATGCTTTCGTATGTTTCTAAGAAGCTATTCAGTTCACTTCTGGTCCCACTCTAAGTCTTATAAAGAGGTTGTTTGCTCCTCCCAGGTATGTGTACTGTTCACCAATACTGTTATCCTGTCGAAATTGTCACTAACTTGAGTGTCAAAGTGTATCTTATCGAAATTCTCACAAACTTGAGTATCAAAGTGTATCTTATCGAAATTCTCACTAACTTGAATTTAAAGTGTATTTTGGTATTCACCCTTGTGGACATCTGTATTCCTGTGTGTAAGGCGACCTCCTAACCAACAGATGTTCAAACCCCGATTCCCTGAGAGTGCAGTTTTCTGATTGACTTTGATGCTTGTATCAAGCTTAAGCTACAAGGGGAGTGCCACAATATTAGAATTATTTGGTTATTACTCTTATTGTTAAATGTTAAGGGGCTAATGGACTTGGGCTTATAGTACTAGCACTTAACCAAGTTATTAGATAAATAGGGATGCTAAAGGTTAGTGTTTTGTTTCACATTACACCTTTCATTATACTTTCAGCATACTGAACCGTCTTTCTCTCTTGTCCTTTCCCTTATCCCTATACCAATAATTCTTTGGCACTTTCTTTTCCATTATTGCACTTTATTAATTGAAACTAGTTGATAAATTTTTACCTGCATGAGAATAAATTTAGCTCAGGCTGATGTTGTATACTTTTTTACGAAGCAAATAAACTGGTGAGTTGTAATAATGCAATTGACACTTATTACTTATGAGTCTTCCAATTTCTGACAGGGGGATACTCTAGATTACCTTGGCATCCCAGGCCTTCACTTAGCTGGAAGCCAGGGAGTGGTTGTGATTGCTATTTGCCAAGTACTCCTTATG

Protein sequence

>MS.gene27116.t1

MVWLQLQSVTCPSSSSSCFVSGSSRCSLSSVNCFAPKPRTQHLICNASWQELAGVLLFSAIPFTAVKAIANSPLGESLQRKMEETKQLAVQNSSKFKAQAAKARKQSFWYGQGRPRWLGPISYDGYPSYLIGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIPELLDLLGVFHFVEPVWWRVGYSKLQGDTLDYLGIPGLHLAGSQGVVVIAICQVLLM