AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene32050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32050.t1 MTR_1g072260 97.257 401 11 0 1 401 1 401 0.0 801
MS.gene32050.t1 MTR_7g111860 35.733 375 209 10 42 392 5 371 9.09e-61 201
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32050.t1 AT3G63140 81.977 344 62 0 56 399 61 404 0.0 594
MS.gene32050.t1 AT1G09340 35.244 349 212 6 51 392 30 371 1.74e-59 198
MS.gene32050.t1 AT1G09340 35.530 349 210 7 52 392 31 372 1.30e-58 196

Find 100 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATCAATTCCAATAGCTTT+TGG 0.225530 1.2:+55210473 None:intergenic
TAGAGCAGCCAAAAGTAAAT+TGG 0.234159 1.2:-55210076 MS.gene32050:CDS
AGCCTTTCCTTTCCGTAATA+TGG 0.258949 1.2:-55210444 MS.gene32050:intron
GGAAGCATTTGATGTGGTTT+TGG 0.277672 1.2:-55211509 MS.gene32050:CDS
TTGACAGTTGGGCAGTATTC+AGG 0.282729 1.2:-55210909 MS.gene32050:CDS
GACCGTGCAGTGACTCTAAA+TGG 0.294016 1.2:-55210554 MS.gene32050:CDS
TTAACTGAGAATCTGTTAAA+AGG 0.304463 1.2:+55211749 None:intergenic
ACTCCATCCCAATTTACTTT+TGG 0.315805 1.2:+55210068 None:intergenic
TGCCATTTGTAGGGATTGTT+CGG 0.321985 1.2:-55210712 MS.gene32050:intron
TCATAATGCACAATGTTAAC+AGG 0.325320 1.2:+55210497 None:intergenic
CATTATGATCCAAAAGCTAT+TGG 0.327599 1.2:-55210482 MS.gene32050:CDS
CTTGTAGGCCGGTGATTGAT+TGG 0.337830 1.2:-55211164 MS.gene32050:intron
GTGCTGGAGGCAGTACAGTA+TGG 0.353532 1.2:-55211567 MS.gene32050:CDS
TCATCTAGCTCAAATTTGAT+TGG 0.372467 1.2:+55209973 None:intergenic
GACAGACCTGTGCTAATTCC+TGG 0.376564 1.2:-55210689 MS.gene32050:CDS
TTTGAGGAGTACATAAAGAT+TGG 0.382185 1.2:-55210009 MS.gene32050:CDS
GCCATTTGTAGGGATTGTTC+GGG 0.401187 1.2:-55210711 MS.gene32050:intron
GCTAGATGATAAGATATTAG+AGG 0.403011 1.2:-55209959 MS.gene32050:CDS
CCTGTGCTAATTCCTGGTTC+AGG 0.406137 1.2:-55210683 MS.gene32050:CDS
TTCAGGCCACAGTATATGAT+AGG 0.407167 1.2:-55210892 MS.gene32050:CDS
ATGCTATGATTTGCAGCATC+CGG 0.409637 1.2:+55210593 None:intergenic
AGATTGATAGAGAGGAGGAT+TGG 0.413296 1.2:+55212002 None:intergenic
TAAAGAAGGGTGTGATAGAA+AGG 0.420821 1.2:+55211973 None:intergenic
GGTAGAGGAGATTGATAGAG+AGG 0.430909 1.2:+55211994 None:intergenic
TTGCTTAGCACCAGCACTCT+TGG 0.432659 1.2:+55211140 None:intergenic
TACTTTGCAAAAGAGCTACT+TGG 0.437164 1.2:-55211836 MS.gene32050:CDS
TTCTTGTTCATCAGTAGTGC+TGG 0.442792 1.2:-55211117 MS.gene32050:CDS
CCACAGTATATGATAGGGTC+TGG 0.453744 1.2:-55210886 MS.gene32050:CDS
ATGTGAAAGTGGGAGAAGAT+TGG 0.454331 1.2:+55212060 None:intergenic
AGCGGTGGACATGCCGTGAT+TGG 0.454893 1.2:-55211863 MS.gene32050:CDS
TTGTAGGCCGGTGATTGATT+GGG 0.458275 1.2:-55211163 MS.gene32050:intron
TGCTGGAGGCAGTACAGTAT+GGG 0.461255 1.2:-55211566 MS.gene32050:CDS
GACAGGCACTGGAACTTTCA+AGG 0.461589 1.2:+55209936 None:intergenic
AGAGCAGCCAAAAGTAAATT+GGG 0.463206 1.2:-55210075 MS.gene32050:CDS
GCAGATGTAGGGAGTGTTGT+AGG 0.465644 1.2:-55211535 MS.gene32050:CDS
AGGGTGTGATAGAAAGGTAG+AGG 0.470337 1.2:+55211979 None:intergenic
TATCTGTAACTACCATATTA+CGG 0.470842 1.2:+55210432 None:intergenic
TTGAGGAGTACATAAAGATT+GGG 0.473490 1.2:-55210008 MS.gene32050:CDS
TTCATCACCAACAGTGAGAA+TGG 0.478740 1.2:+55211796 None:intergenic
ATTCAGGAAATTGTGAGTGC+TGG 0.482366 1.2:-55211583 MS.gene32050:intron
TGTAGGGAGTGTTGTAGGAG+GGG 0.485069 1.2:-55211530 MS.gene32050:CDS
TGGATATGAATGGATTAGAC+AGG 0.488013 1.2:+55209919 None:intergenic
TGCTATGATTTGCAGCATCC+GGG 0.492238 1.2:+55210594 None:intergenic
TTTACATACCCCTTCAACAT+GGG 0.493986 1.2:+55211068 None:intergenic
TAGGTCTTCAGGTAGGTTTG+TGG 0.496981 1.2:+55210041 None:intergenic
AAACGTTTAGAAGCTAAAGA+AGG 0.497940 1.2:+55211959 None:intergenic
GATGAACCTCCCCATGTTGA+AGG 0.498721 1.2:-55211078 MS.gene32050:CDS
GCAAAAGAGCTACTTGGTGC+TGG 0.499775 1.2:-55211830 MS.gene32050:CDS
ATTGATTGGGCCAAGAGTGC+TGG 0.505534 1.2:-55211150 MS.gene32050:CDS
AAACTATGTGCTCAAGCTGC+AGG 0.509740 1.2:-55210524 MS.gene32050:CDS
TGGGGAAATCCTGCAGATGT+AGG 0.509975 1.2:-55211547 MS.gene32050:CDS
ATGTAGGGAGTGTTGTAGGA+GGG 0.512919 1.2:-55211531 MS.gene32050:CDS
AAGTGGGAGAAGATTGGAAG+AGG 0.519156 1.2:+55212066 None:intergenic
GACTCTAGCTGTTGAGAACC+CGG 0.519383 1.2:-55210612 MS.gene32050:CDS
TGAATGGATTAGACAGGCAC+TGG 0.522079 1.2:+55209925 None:intergenic
GATGTAGGGAGTGTTGTAGG+AGG 0.533905 1.2:-55211532 MS.gene32050:CDS
AGAGGAGATTGATAGAGAGG+AGG 0.537025 1.2:+55211997 None:intergenic
AGACCTAAAAGAACGGTTTG+AGG 0.542890 1.2:-55210025 MS.gene32050:CDS
AAAGTAGAAGAATGTGAAAG+TGG 0.543210 1.2:+55212049 None:intergenic
GAAGAGCAAGGTAGGTGAAG+AGG 0.543714 1.2:+55212096 None:intergenic
CACGGCATGTCCACCGCTGT+TGG 0.546475 1.2:+55211868 None:intergenic
TCTGTCACCATTCTCACTGT+TGG 0.546638 1.2:-55211803 MS.gene32050:CDS
ACAACACTCCCTACATCTGC+AGG 0.549124 1.2:+55211538 None:intergenic
ATGAACCTCCCCATGTTGAA+GGG 0.549367 1.2:-55211077 MS.gene32050:CDS
GATGCTGTCAAAGCAGATGC+TGG 0.549933 1.2:-55210967 MS.gene32050:CDS
AGGTGAAGAGGAAGCAAGCA+TGG 0.550927 1.2:+55212108 None:intergenic
GGAATGAAGAAGAGAAAGAA+AGG 0.551829 1.2:+55212023 None:intergenic
GGGGAAATCCTGCAGATGTA+GGG 0.557910 1.2:-55211546 MS.gene32050:CDS
GTTGCAGAGAAGAGCAAGGT+AGG 0.560127 1.2:+55212088 None:intergenic
CAGGAAATTGTGAGTGCTGG+AGG 0.569688 1.2:-55211580 MS.gene32050:CDS
CAACAATGGCAAGGATCTTG+AGG 0.570058 1.2:-55211485 MS.gene32050:CDS
AAAGCAGATGCTGGTCATGT+TGG 0.578448 1.2:-55210958 MS.gene32050:CDS
AAGTGCTGCAGAGAAGAAGA+AGG 0.579004 1.2:-55211906 MS.gene32050:CDS
GTGAGTTGCAATCCTGAACC+AGG 0.583215 1.2:+55210671 None:intergenic
ACTGAGAATCTGTTAAAAGG+AGG 0.587402 1.2:+55211752 None:intergenic
CAGCCAAAAGTAAATTGGGA+TGG 0.590712 1.2:-55210071 MS.gene32050:CDS
AGGAGGGGAAGCATTTGATG+TGG 0.594670 1.2:-55211515 MS.gene32050:CDS
AACGTTTAGAAGCTAAAGAA+GGG 0.594765 1.2:+55211960 None:intergenic
TTACATACCCCTTCAACATG+GGG 0.600415 1.2:+55211069 None:intergenic
TGCAAAGTAGAAGCCAATCA+CGG 0.603066 1.2:+55211850 None:intergenic
CTCTTGGCCCAATCAATCAC+CGG 0.609443 1.2:+55211156 None:intergenic
TCAGGCCACAGTATATGATA+GGG 0.612425 1.2:-55210891 MS.gene32050:CDS
TACCATATTACGGAAAGGAA+AGG 0.618636 1.2:+55210442 None:intergenic
GTAACTACCATATTACGGAA+AGG 0.619320 1.2:+55210437 None:intergenic
CCTGAACCAGGAATTAGCAC+AGG 0.620301 1.2:+55210683 None:intergenic
CATACCCCTTCAACATGGGG+AGG 0.623130 1.2:+55211072 None:intergenic
ATAATAAATACCAACAGCGG+TGG 0.623645 1.2:-55211878 MS.gene32050:CDS
TGAACCTCCCCATGTTGAAG+GGG 0.630399 1.2:-55211076 MS.gene32050:intron
TGGAAACAACAAAGATTGTG+AGG 0.640779 1.2:-55210866 MS.gene32050:CDS
CATAATGCACAATGTTAACA+GGG 0.646540 1.2:+55210498 None:intergenic
TTCCATTTAGAGTCACTGCA+CGG 0.647510 1.2:+55210552 None:intergenic
TACCTGAAGACCTAAAAGAA+CGG 0.651559 1.2:-55210032 MS.gene32050:CDS
AGAGGTTGCAGAGAAGAGCA+AGG 0.651792 1.2:+55212084 None:intergenic
GCAAGGATCTTGAGGCTGTG+AGG 0.652778 1.2:-55211477 MS.gene32050:intron
GCTGGAGGCAGTACAGTATG+GGG 0.653422 1.2:-55211565 MS.gene32050:CDS
AAGTAGAAGAATGTGAAAGT+GGG 0.654024 1.2:+55212050 None:intergenic
ACAACAAAGATTGTGAGGAG+TGG 0.655123 1.2:-55210861 MS.gene32050:CDS
CAGTGAGAATGGTGACAGAG+TGG 0.686600 1.2:+55211807 None:intergenic
CTAATAATAAATACCAACAG+CGG 0.689956 1.2:-55211881 MS.gene32050:CDS
CCAGACCCTATCATATACTG+TGG 0.716866 1.2:+55210886 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAACCTTGATGTAATAA+TGG + chr1.2:55210421-55210440 None:intergenic 20.0%
!! CATCTTTAGATTACAATAAT+TGG + chr1.2:55211042-55211061 None:intergenic 20.0%
!! GTAAAAAAAAAAGCTTCATA+TGG + chr1.2:55211265-55211284 None:intergenic 20.0%
!! GTTGAATTTGAAAAATATTC+AGG - chr1.2:55210446-55210465 MS.gene32050:CDS 20.0%
! AATAATTGGTATCAGCAAAA+TGG + chr1.2:55211028-55211047 None:intergenic 25.0%
! AATCTAAAGATGAAAATCAC+TGG - chr1.2:55211050-55211069 MS.gene32050:intron 25.0%
! CTAATAATAAATACCAACAG+CGG - chr1.2:55210164-55210183 MS.gene32050:intron 25.0%
! TACAAGTTAAGATCAAGATT+AGG + chr1.2:55210867-55210886 None:intergenic 25.0%
! TATCTGTAACTACCATATTA+CGG + chr1.2:55211616-55211635 None:intergenic 25.0%
! TTAACTGAGAATCTGTTAAA+AGG + chr1.2:55210299-55210318 None:intergenic 25.0%
!! AAAAGCTTCATATGGATTAA+AGG + chr1.2:55211257-55211276 None:intergenic 25.0%
!! AAATGTATATTGCCATTTGT+AGG - chr1.2:55211323-55211342 MS.gene32050:intron 25.0%
!! AATGTATATTGCCATTTGTA+GGG - chr1.2:55211324-55211343 MS.gene32050:intron 25.0%
!! AGTGAAAAGAACAATTCTTT+TGG + chr1.2:55210350-55210369 None:intergenic 25.0%
!!! TAATCTTGATCTTAACTTGT+AGG - chr1.2:55210866-55210885 MS.gene32050:CDS 25.0%
AAACGTTTAGAAGCTAAAGA+AGG + chr1.2:55210089-55210108 None:intergenic 30.0%
AAAGTAGAAGAATGTGAAAG+TGG + chr1.2:55209999-55210018 None:intergenic 30.0%
AACGTTTAGAAGCTAAAGAA+GGG + chr1.2:55210088-55210107 None:intergenic 30.0%
AAGTAGAAGAATGTGAAAGT+GGG + chr1.2:55209998-55210017 None:intergenic 30.0%
CAATCACCATTATTACATCA+AGG - chr1.2:55210412-55210431 MS.gene32050:intron 30.0%
CATAATGCACAATGTTAACA+GGG + chr1.2:55211550-55211569 None:intergenic 30.0%
CATTATGATCCAAAAGCTAT+TGG - chr1.2:55211563-55211582 MS.gene32050:CDS 30.0%
GCTAGATGATAAGATATTAG+AGG - chr1.2:55212086-55212105 MS.gene32050:CDS 30.0%
TCATAATGCACAATGTTAAC+AGG + chr1.2:55211551-55211570 None:intergenic 30.0%
TGTAATGCAGACTAGAATAT+AGG + chr1.2:55211640-55211659 None:intergenic 30.0%
! GTTTACAGGTTCAATACTTT+TGG + chr1.2:55211705-55211724 None:intergenic 30.0%
! TCATCTAGCTCAAATTTGAT+TGG + chr1.2:55212075-55212094 None:intergenic 30.0%
! TGAAGAAACTTTTGACAGTT+GGG - chr1.2:55211125-55211144 MS.gene32050:CDS 30.0%
! TTGAAGAAACTTTTGACAGT+TGG - chr1.2:55211124-55211143 MS.gene32050:CDS 30.0%
! TTGAGGAGTACATAAAGATT+GGG - chr1.2:55212037-55212056 MS.gene32050:CDS 30.0%
! TTTGAGGAGTACATAAAGAT+TGG - chr1.2:55212036-55212055 MS.gene32050:CDS 30.0%
!!! GTTTTAAGATATAAGAGCAG+CGG - chr1.2:55210665-55210684 MS.gene32050:CDS 30.0%
AAACTCATCATGTCTCAACA+AGG - chr1.2:55211838-55211857 MS.gene32050:CDS 35.0%
AACCTGTTGAGTTAACATGA+AGG + chr1.2:55210648-55210667 None:intergenic 35.0%
AACTCATCATGTCTCAACAA+GGG - chr1.2:55211839-55211858 MS.gene32050:CDS 35.0%
ACTGAGAATCTGTTAAAAGG+AGG + chr1.2:55210296-55210315 None:intergenic 35.0%
AGAGCAGCCAAAAGTAAATT+GGG - chr1.2:55211970-55211989 MS.gene32050:CDS 35.0%
ATAATAAATACCAACAGCGG+TGG - chr1.2:55210167-55210186 MS.gene32050:intron 35.0%
ATTGAACCTGTAAACAGAAC+AGG - chr1.2:55211710-55211729 MS.gene32050:intron 35.0%
GGAATGAAGAAGAGAAAGAA+AGG + chr1.2:55210025-55210044 None:intergenic 35.0%
GGTTCTTGAAATGCTGTATT+AGG + chr1.2:55211007-55211026 None:intergenic 35.0%
GTAACTACCATATTACGGAA+AGG + chr1.2:55211611-55211630 None:intergenic 35.0%
GTTAGTTGTCTGATATGTGT+CGG - chr1.2:55210726-55210745 MS.gene32050:intron 35.0%
TACCATATTACGGAAAGGAA+AGG + chr1.2:55211606-55211625 None:intergenic 35.0%
TACCTGAAGACCTAAAAGAA+CGG - chr1.2:55212013-55212032 MS.gene32050:CDS 35.0%
TACTATCCTGTTCTGTTTAC+AGG + chr1.2:55211719-55211738 None:intergenic 35.0%
TACTTTGCAAAAGAGCTACT+TGG - chr1.2:55210209-55210228 MS.gene32050:intron 35.0%
TAGAGCAGCCAAAAGTAAAT+TGG - chr1.2:55211969-55211988 MS.gene32050:CDS 35.0%
TGGAAACAACAAAGATTGTG+AGG - chr1.2:55211179-55211198 MS.gene32050:intron 35.0%
TTGTTCTAATATATGCAGCC+AGG - chr1.2:55210820-55210839 MS.gene32050:intron 35.0%
TTTACATACCCCTTCAACAT+GGG + chr1.2:55210980-55210999 None:intergenic 35.0%
! ACTCCATCCCAATTTACTTT+TGG + chr1.2:55211980-55211999 None:intergenic 35.0%
! GCATCAATTCCAATAGCTTT+TGG + chr1.2:55211575-55211594 None:intergenic 35.0%
! TAAAGAAGGGTGTGATAGAA+AGG + chr1.2:55210075-55210094 None:intergenic 35.0%
! TTTTACATACCCCTTCAACA+TGG + chr1.2:55210981-55211000 None:intergenic 35.0%
!! AATTTACTTTTGGCTGCTCT+AGG + chr1.2:55211970-55211989 None:intergenic 35.0%
!! TCTTTCTTTAAGACTGTACC+TGG + chr1.2:55210841-55210860 None:intergenic 35.0%
AAGATGAAAATCACTGGAGC+AGG - chr1.2:55211056-55211075 MS.gene32050:intron 40.0%
ACAACAAAGATTGTGAGGAG+TGG - chr1.2:55211184-55211203 MS.gene32050:intron 40.0%
AGACCTAAAAGAACGGTTTG+AGG - chr1.2:55212020-55212039 MS.gene32050:CDS 40.0%
AGATTGATAGAGAGGAGGAT+TGG + chr1.2:55210046-55210065 None:intergenic 40.0%
AGCCTTTCCTTTCCGTAATA+TGG - chr1.2:55211601-55211620 MS.gene32050:intron 40.0%
AGTGGTTCTTTGACAGTAAG+TGG - chr1.2:55211202-55211221 MS.gene32050:intron 40.0%
ATGTGAAAGTGGGAGAAGAT+TGG + chr1.2:55209988-55210007 None:intergenic 40.0%
ATTCAGGAAATTGTGAGTGC+TGG - chr1.2:55210462-55210481 MS.gene32050:CDS 40.0%
CAGCCAAAAGTAAATTGGGA+TGG - chr1.2:55211974-55211993 MS.gene32050:CDS 40.0%
GTGGTTCTTTGACAGTAAGT+GGG - chr1.2:55211203-55211222 MS.gene32050:intron 40.0%
TCAGGCCACAGTATATGATA+GGG - chr1.2:55211154-55211173 MS.gene32050:CDS 40.0%
TGCAAAGTAGAAGCCAATCA+CGG + chr1.2:55210198-55210217 None:intergenic 40.0%
TGCCTTCATGTTAACTCAAC+AGG - chr1.2:55210643-55210662 MS.gene32050:CDS 40.0%
TTACATACCCCTTCAACATG+GGG + chr1.2:55210979-55210998 None:intergenic 40.0%
TTCAGGCCACAGTATATGAT+AGG - chr1.2:55211153-55211172 MS.gene32050:CDS 40.0%
TTCATCACCAACAGTGAGAA+TGG + chr1.2:55210252-55210271 None:intergenic 40.0%
TTCTTGTTCATCAGTAGTGC+TGG - chr1.2:55210928-55210947 MS.gene32050:CDS 40.0%
! ACTCCTCAAACCGTTCTTTT+AGG + chr1.2:55212026-55212045 None:intergenic 40.0%
! ATGCTATGATTTGCAGCATC+CGG + chr1.2:55211455-55211474 None:intergenic 40.0%
! TGCCATTTGTAGGGATTGTT+CGG - chr1.2:55211333-55211352 MS.gene32050:intron 40.0%
! TTCCATTTAGAGTCACTGCA+CGG + chr1.2:55211496-55211515 None:intergenic 40.0%
!! AACCGTTCTTTTAGGTCTTC+AGG + chr1.2:55212018-55212037 None:intergenic 40.0%
!! CTTGATCTTAACTTGTAGGC+CGG - chr1.2:55210870-55210889 MS.gene32050:CDS 40.0%
!! GTTCTTTTAGGTCTTCAGGT+AGG + chr1.2:55212014-55212033 None:intergenic 40.0%
!!! GATGTGGTTTTGGACAACAA+TGG - chr1.2:55210546-55210565 MS.gene32050:CDS 40.0%
!!! GGAAGCATTTGATGTGGTTT+TGG - chr1.2:55210536-55210555 MS.gene32050:CDS 40.0%
AAACTATGTGCTCAAGCTGC+AGG - chr1.2:55211521-55211540 MS.gene32050:CDS 45.0%
AAAGCAGATGCTGGTCATGT+TGG - chr1.2:55211087-55211106 MS.gene32050:CDS 45.0%
AACAAGGGAACTCTGCATCA+TGG - chr1.2:55211854-55211873 MS.gene32050:CDS 45.0%
AAGTGGGAGAAGATTGGAAG+AGG + chr1.2:55209982-55210001 None:intergenic 45.0%
AGAGGAGATTGATAGAGAGG+AGG + chr1.2:55210051-55210070 None:intergenic 45.0%
AGGGTGTGATAGAAAGGTAG+AGG + chr1.2:55210069-55210088 None:intergenic 45.0%
ATGAACCTCCCCATGTTGAA+GGG - chr1.2:55210968-55210987 MS.gene32050:CDS 45.0%
CAACAATGGCAAGGATCTTG+AGG - chr1.2:55210560-55210579 MS.gene32050:CDS 45.0%
CACAAAGTCGTTCAGCAACA+TGG + chr1.2:55211753-55211772 None:intergenic 45.0%
CCACAGTATATGATAGGGTC+TGG - chr1.2:55211159-55211178 MS.gene32050:CDS 45.0%
CCAGACCCTATCATATACTG+TGG + chr1.2:55211162-55211181 None:intergenic 45.0%
GCCATTTGTAGGGATTGTTC+GGG - chr1.2:55211334-55211353 MS.gene32050:intron 45.0%
GGTAGAGGAGATTGATAGAG+AGG + chr1.2:55210054-55210073 None:intergenic 45.0%
TAGGTCTTCAGGTAGGTTTG+TGG + chr1.2:55212007-55212026 None:intergenic 45.0%
TCCCGAACAATCCCTACAAA+TGG + chr1.2:55211338-55211357 None:intergenic 45.0%
TCTGTCACCATTCTCACTGT+TGG - chr1.2:55210242-55210261 MS.gene32050:intron 45.0%
TTGACAGTTGGGCAGTATTC+AGG - chr1.2:55211136-55211155 MS.gene32050:CDS 45.0%
TTGTAGGCCGGTGATTGATT+GGG - chr1.2:55210882-55210901 MS.gene32050:CDS 45.0%
! AAGTGCTGCAGAGAAGAAGA+AGG - chr1.2:55210139-55210158 MS.gene32050:intron 45.0%
! TGCTATGATTTGCAGCATCC+GGG + chr1.2:55211454-55211473 None:intergenic 45.0%
!! ATGTAGGGAGTGTTGTAGGA+GGG - chr1.2:55210514-55210533 MS.gene32050:CDS 45.0%
!!! GGTTTTGGACAACAATGGCA+AGG - chr1.2:55210551-55210570 MS.gene32050:CDS 45.0%
ACAACACTCCCTACATCTGC+AGG + chr1.2:55210510-55210529 None:intergenic 50.0%
AGAGGTTGCAGAGAAGAGCA+AGG + chr1.2:55209964-55209983 None:intergenic 50.0%
AGGTGAAGAGGAAGCAAGCA+TGG + chr1.2:55209940-55209959 None:intergenic 50.0%
CAGTGAGAATGGTGACAGAG+TGG + chr1.2:55210241-55210260 None:intergenic 50.0%
CCTGAACCAGGAATTAGCAC+AGG + chr1.2:55211365-55211384 None:intergenic 50.0%
CCTGTGCTAATTCCTGGTTC+AGG - chr1.2:55211362-55211381 MS.gene32050:intron 50.0%
CTCTTGGCCCAATCAATCAC+CGG + chr1.2:55210892-55210911 None:intergenic 50.0%
CTTGTAGGCCGGTGATTGAT+TGG - chr1.2:55210881-55210900 MS.gene32050:CDS 50.0%
GAAGAGCAAGGTAGGTGAAG+AGG + chr1.2:55209952-55209971 None:intergenic 50.0%
GACAGACCTGTGCTAATTCC+TGG - chr1.2:55211356-55211375 MS.gene32050:intron 50.0%
GACCGTGCAGTGACTCTAAA+TGG - chr1.2:55211491-55211510 MS.gene32050:CDS 50.0%
GACTCTAGCTGTTGAGAACC+CGG - chr1.2:55211433-55211452 MS.gene32050:intron 50.0%
GATGAACCTCCCCATGTTGA+AGG - chr1.2:55210967-55210986 MS.gene32050:CDS 50.0%
GATGCTGTCAAAGCAGATGC+TGG - chr1.2:55211078-55211097 MS.gene32050:CDS 50.0%
GGGGAAATCCTGCAGATGTA+GGG - chr1.2:55210499-55210518 MS.gene32050:CDS 50.0%
GTGAGTTGCAATCCTGAACC+AGG + chr1.2:55211377-55211396 None:intergenic 50.0%
GTTGCAGAGAAGAGCAAGGT+AGG + chr1.2:55209960-55209979 None:intergenic 50.0%
TGAACCTCCCCATGTTGAAG+GGG - chr1.2:55210969-55210988 MS.gene32050:CDS 50.0%
TGCTGGAGGCAGTACAGTAT+GGG - chr1.2:55210479-55210498 MS.gene32050:CDS 50.0%
TGGGGAAATCCTGCAGATGT+AGG - chr1.2:55210498-55210517 MS.gene32050:CDS 50.0%
TTGCTTAGCACCAGCACTCT+TGG + chr1.2:55210908-55210927 None:intergenic 50.0%
! ATTGATTGGGCCAAGAGTGC+TGG - chr1.2:55210895-55210914 MS.gene32050:CDS 50.0%
!! AGGAGGGGAAGCATTTGATG+TGG - chr1.2:55210530-55210549 MS.gene32050:CDS 50.0%
!! CAGGAAATTGTGAGTGCTGG+AGG - chr1.2:55210465-55210484 MS.gene32050:CDS 50.0%
!! GACAGGCACTGGAACTTTCA+AGG + chr1.2:55212112-55212131 None:intergenic 50.0%
!! GATGTAGGGAGTGTTGTAGG+AGG - chr1.2:55210513-55210532 MS.gene32050:CDS 50.0%
!! GCAAAAGAGCTACTTGGTGC+TGG - chr1.2:55210215-55210234 MS.gene32050:intron 50.0%
!! GCAGATGTAGGGAGTGTTGT+AGG - chr1.2:55210510-55210529 MS.gene32050:CDS 50.0%
!! TGTAGGGAGTGTTGTAGGAG+GGG - chr1.2:55210515-55210534 MS.gene32050:CDS 50.0%
CATACCCCTTCAACATGGGG+AGG + chr1.2:55210976-55210995 None:intergenic 55.0%
GCAAGGATCTTGAGGCTGTG+AGG - chr1.2:55210568-55210587 MS.gene32050:CDS 55.0%
GCTGGAGGCAGTACAGTATG+GGG - chr1.2:55210480-55210499 MS.gene32050:CDS 55.0%
GTGCTGGAGGCAGTACAGTA+TGG - chr1.2:55210478-55210497 MS.gene32050:CDS 55.0%
AGCGGTGGACATGCCGTGAT+TGG - chr1.2:55210182-55210201 MS.gene32050:intron 60.0%
CACGGCATGTCCACCGCTGT+TGG + chr1.2:55210180-55210199 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 55209933 55212134 55209933 ID=MS.gene32050
chr1.2 mRNA 55209933 55212134 55209933 ID=MS.gene32050.t1;Parent=MS.gene32050
chr1.2 exon 55211754 55212134 55211754 ID=MS.gene32050.t1.exon1;Parent=MS.gene32050.t1
chr1.2 CDS 55211754 55212134 55211754 ID=cds.MS.gene32050.t1;Parent=MS.gene32050.t1
chr1.2 exon 55211478 55211599 55211478 ID=MS.gene32050.t1.exon2;Parent=MS.gene32050.t1
chr1.2 CDS 55211478 55211599 55211478 ID=cds.MS.gene32050.t1;Parent=MS.gene32050.t1
chr1.2 exon 55211077 55211179 55211077 ID=MS.gene32050.t1.exon3;Parent=MS.gene32050.t1
chr1.2 CDS 55211077 55211179 55211077 ID=cds.MS.gene32050.t1;Parent=MS.gene32050.t1
chr1.2 exon 55210851 55210989 55210851 ID=MS.gene32050.t1.exon4;Parent=MS.gene32050.t1
chr1.2 CDS 55210851 55210989 55210851 ID=cds.MS.gene32050.t1;Parent=MS.gene32050.t1
chr1.2 exon 55210445 55210722 55210445 ID=MS.gene32050.t1.exon5;Parent=MS.gene32050.t1
chr1.2 CDS 55210445 55210722 55210445 ID=cds.MS.gene32050.t1;Parent=MS.gene32050.t1
chr1.2 exon 55209933 55210115 55209933 ID=MS.gene32050.t1.exon6;Parent=MS.gene32050.t1
chr1.2 CDS 55209933 55210115 55209933 ID=cds.MS.gene32050.t1;Parent=MS.gene32050.t1
Gene Sequence

>MS.gene32050

ATGGCCATGCTTGCTTCCTCTTCACCTACCTTGCTCTTCTCTGCAACCTCTTCCAATCTTCTCCCACTTTCACATTCTTCTACTTTGCGCCTTTCTTTCTCTTCTTCATTCCAATCCTCCTCTCTATCAATCTCCTCTACCTTTCTATCACACCCTTCTTTAGCTTCTAAACGTTTAGCTAATCATGCTACTTTAAGCATCAGTGCAAGTGCTGCAGAGAAGAAGAAGGTGCTAATAATAAATACCAACAGCGGTGGACATGCCGTGATTGGCTTCTACTTTGCAAAAGAGCTACTTGGTGCTGGCCACTCTGTCACCATTCTCACTGTTGGTGATGAAAGCTCAGACAAGATGAAGAAACCTCCTTTTAACAGATTCTCAGTTAATGATCTTTATCTCATTCTCACACTGATTCCAAAAGAATTGTTCTTTTCACTACAGTACACTGCTATTTGCATTGAAAGAATATTGTGAAATTACAATCACCATTATTACATCAAGGTTTAATTTATTGTTGAATTTGAAAAATATTCAGGAAATTGTGAGTGCTGGAGGCAGTACAGTATGGGGAAATCCTGCAGATGTAGGGAGTGTTGTAGGAGGGGAAGCATTTGATGTGGTTTTGGACAACAATGGCAAGGATCTTGAGGCTGTGAGGTTTGTTGTATTGATTCTTGTTAGCTTTTGTTCAATGATTAACTTGTATTGTATGCCTTCATGTTAACTCAACAGGTTTTAAGATATAAGAGCAGCGGCGTGCAACGCGTACAATTTGTTTTTATTACGTAGACTTGTTAGTTGTCTGATATGTGTCGGTGTCTGATACTAAAACAAGTGTCAATGTTTCATACTGCAATACTGTTATAATTCTGTTGAAGAAACAGAAATTGTTCTAATATATGCAGCCAGGTACAGTCTTAAAGAAAGACATCCTAATCTTGATCTTAACTTGTAGGCCGGTGATTGATTGGGCCAAGAGTGCTGGTGCTAAGCAATTCTTGTTCATCAGTAGTGCTGGAATCTACAAAACGACAGATGAACCTCCCCATGTTGAAGGGGTATGTAAAAGTTCCTAATACAGCATTTCAAGAACCATTTTGCTGATACCAATTATTGTAATCTAAAGATGAAAATCACTGGAGCAGGATGCTGTCAAAGCAGATGCTGGTCATGTTGGAGTTGAGAAATACATTGAAGAAACTTTTGACAGTTGGGCAGTATTCAGGCCACAGTATATGATAGGGTCTGGAAACAACAAAGATTGTGAGGAGTGGTTCTTTGACAGTAAGTGGGAAAATTCTTAAACAAATTTTATTTTAAACCTTTAATCCATATGAAGCTTTTTTTTTTACTCTTTGAAATTTTTATGCTAATTTAGAACTTCTAAAAGAAATGTATATTGCCATTTGTAGGGATTGTTCGGGACAGACCTGTGCTAATTCCTGGTTCAGGATTGCAACTCACTAACATATCTCATGTTAAAGACTTGTCTTCAATGTTGACTCTAGCTGTTGAGAACCCGGATGCTGCAAATCATAGCATTTTCAACTGTGTGAGTGACCGTGCAGTGACTCTAAATGGAATAGCTAAACTATGTGCTCAAGCTGCAGGACGCCCTGTTAACATTGTGCATTATGATCCAAAAGCTATTGGAATTGATGCAAAGAAAGCCTTTCCTTTCCGTAATATGGTAGTTACAGATATCCTATATTCTAGTCTGCATTACAACTTTATTGCATAATGCGCAAATACGCGATTGTCTTGCTTAACCAAAAGTATTGAACCTGTAAACAGAACAGGATAGTAACAGTCTATTACCATGTTGCTGAACGACTTTGTGATCTGTTTTACGTACAATGTAAATTACACATACTAAGCAGTGAATTCATGCACAGAAAATTTGACAAACTCATCATGTCTCAACAAGGGAACTCTGCATCATGGACATTTGTCAAATTTGAAATATAAAATTCTCGTTGTTATTATTGCTTAACAATGTTTTATGAATGTATGATGCAGCACTTCTATGCTGAACCTAGAGCAGCCAAAAGTAAATTGGGATGGAGTTCAACCACAAACCTACCTGAAGACCTAAAAGAACGGTTTGAGGAGTACATAAAGATTGGGAGAGACAAGAAGCCAATCAAATTTGAGCTAGATGATAAGATATTAGAGGCCTTGAAAGTTCCAGTGCCTGTCTAA
Protein sequence

>MS.gene32050.t1

MAMLASSSPTLLFSATSSNLLPLSHSSTLRLSFSSSFQSSSLSISSTFLSHPSLASKRLANHATLSISASAAEKKKVLIINTNSGGHAVIGFYFAKELLGAGHSVTILTVGDESSDKMKKPPFNRFSEIVSAGGSTVWGNPADVGSVVGGEAFDVVLDNNGKDLEAVRPVIDWAKSAGAKQFLFISSAGIYKTTDEPPHVEGDAVKADAGHVGVEKYIEETFDSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPVLIPGSGLQLTNISHVKDLSSMLTLAVENPDAANHSIFNCVSDRAVTLNGIAKLCAQAAGRPVNIVHYDPKAIGIDAKKAFPFRNMHFYAEPRAAKSKLGWSSTTNLPEDLKERFEEYIKIGRDKKPIKFELDDKILEALKVPVPV