AlfalfaGEDB | MS.gene90277

M. sativa cultivar XinJiangDaYe / MS.gene90277

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005975 GO:0006082 GO:0006099 GO:0008150 GO:0008152 GO:0009987 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0019752 GO:0030060 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0055114 GO:0071704
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90277.t1	XP_003608327.1	98.9	350	4	0	1	350	1	350	5.20E-192	680.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90277.t1	P46488	85.7	350	50	0	1	350	1	350	4.4e-168	592.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90277.t1	G7JTZ0	98.9	350	4	0	1	350	1	350	3.7e-192	680.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene90277	0.880578	4.89E-70	-1.69E-46
MS.gene049171	MS.gene90277	0.929273	8.81E-93	-1.69E-46
MS.gene049173	MS.gene90277	0.852345	4.91E-61	-1.69E-46
MS.gene049217	MS.gene90277	0.910532	1.69E-82	-1.69E-46
MS.gene049222	MS.gene90277	0.951556	1.59E-109	-1.69E-46
MS.gene049232	MS.gene90277	0.87619	1.70E-68	-1.69E-46
MS.gene049285	MS.gene90277	0.941881	1.92E-101	-1.69E-46
MS.gene049312	MS.gene90277	-0.80476	1.85E-49	-1.69E-46
MS.gene049320	MS.gene90277	0.936336	2.04E-97	-1.69E-46
MS.gene04939	MS.gene90277	0.835767	1.39E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 106 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCGAAGAAAGAGTTGGC+AGG	0.568245	4.2:-20363135	MS.gene90277:CDS
AACATCAGCTGTGACACCAG+GGG	0.685298	4.2:+20364932	None:intergenic
AAGAGAAGTTGATGTTCCAG+TGG	0.657736	4.2:-20364060	MS.gene90277:CDS
AAGGAAACCTGGAATGACCA+GGG	0.681756	4.2:-20364415	MS.gene90277:CDS
AAGGTTCGTCTTGGTCGTGC+TGG	0.507899	4.2:-20363307	MS.gene90277:CDS
AAGTCGTCCCTGGTCATTCC+AGG	0.386910	4.2:+20364408	None:intergenic
AATACCTCTCATACTCATTG+AGG	0.533233	4.2:+20363257	None:intergenic
AATACTGCTACTTTGAATCC+AGG	0.573479	4.2:+20365047	None:intergenic
AATACTTAACAGGATTGGGT+TGG	0.515910	4.2:-20363160	MS.gene90277:intron
AATCAAGTTGACAATCGCAT+TGG	0.528249	4.2:+20364326	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAACCTGCAAATTGGA+AGG	+	chr4.2:20362541-20362560	None:intergenic	30.0%
AAAAAACCTGCAAATTGGAA+GGG	+	chr4.2:20362540-20362559	None:intergenic	30.0%
ACAAATTTCAGCTTCAGTAA+TGG	-	chr4.2:20363332-20363351	MS.gene90277:CDS	30.0%
ACTATTGTATGAGTATATGC+TGG	-	chr4.2:20363922-20363941	MS.gene90277:intron	30.0%
ATACTCATACAATAGTAGGA+AGG	+	chr4.2:20363918-20363937	None:intergenic	30.0%
ATTCAATTACGAGATAGAAG+AGG	+	chr4.2:20363893-20363912	None:intergenic	30.0%
CGAATGATGCAAGTATATTT+GGG	-	chr4.2:20363531-20363550	MS.gene90277:intron	30.0%
CTAAACATGATTGATTGTGT+AGG	-	chr4.2:20364522-20364541	MS.gene90277:intron	30.0%
GAAAAAACATTGAAGGATTG+AGG	+	chr4.2:20365353-20365372	None:intergenic	30.0%
GCATATACTCATACAATAGT+AGG	+	chr4.2:20363922-20363941	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	20362479	20365599	20362479	ID=MS.gene90277
chr4.2	mRNA	20362479	20365599	20362479	ID=MS.gene90277.t1;Parent=MS.gene90277
chr4.2	exon	20365526	20365599	20365526	ID=MS.gene90277.t1.exon1;Parent=MS.gene90277.t1
chr4.2	CDS	20365526	20365599	20365526	ID=cds.MS.gene90277.t1;Parent=MS.gene90277.t1
chr4.2	exon	20364908	20365123	20364908	ID=MS.gene90277.t1.exon2;Parent=MS.gene90277.t1
chr4.2	CDS	20364908	20365123	20364908	ID=cds.MS.gene90277.t1;Parent=MS.gene90277.t1
chr4.2	exon	20364203	20364517	20364203	ID=MS.gene90277.t1.exon3;Parent=MS.gene90277.t1
chr4.2	CDS	20364203	20364517	20364203	ID=cds.MS.gene90277.t1;Parent=MS.gene90277.t1
chr4.2	exon	20364016	20364105	20364016	ID=MS.gene90277.t1.exon4;Parent=MS.gene90277.t1
chr4.2	CDS	20364016	20364105	20364016	ID=cds.MS.gene90277.t1;Parent=MS.gene90277.t1
chr4.2	exon	20363841	20363924	20363841	ID=MS.gene90277.t1.exon5;Parent=MS.gene90277.t1
chr4.2	CDS	20363841	20363924	20363841	ID=cds.MS.gene90277.t1;Parent=MS.gene90277.t1
chr4.2	exon	20363635	20363670	20363635	ID=MS.gene90277.t1.exon6;Parent=MS.gene90277.t1
chr4.2	CDS	20363635	20363670	20363635	ID=cds.MS.gene90277.t1;Parent=MS.gene90277.t1
chr4.2	exon	20363445	20363534	20363445	ID=MS.gene90277.t1.exon7;Parent=MS.gene90277.t1
chr4.2	CDS	20363445	20363534	20363445	ID=cds.MS.gene90277.t1;Parent=MS.gene90277.t1
chr4.2	exon	20363262	20363356	20363262	ID=MS.gene90277.t1.exon8;Parent=MS.gene90277.t1
chr4.2	CDS	20363262	20363356	20363262	ID=cds.MS.gene90277.t1;Parent=MS.gene90277.t1
chr4.2	exon	20363119	20363170	20363119	ID=MS.gene90277.t1.exon9;Parent=MS.gene90277.t1
chr4.2	CDS	20363119	20363170	20363119	ID=cds.MS.gene90277.t1;Parent=MS.gene90277.t1
chr4.2	exon	20362577	20362621	20362577	ID=MS.gene90277.t1.exon10;Parent=MS.gene90277.t1
chr4.2	CDS	20362577	20362621	20362577	ID=cds.MS.gene90277.t1;Parent=MS.gene90277.t1
chr4.2	exon	20362479	20362487	20362479	ID=MS.gene90277.t1.exon11;Parent=MS.gene90277.t1
chr4.2	CDS	20362479	20362487	20362479	ID=cds.MS.gene90277.t1;Parent=MS.gene90277.t1

Gene Sequence

>MS.gene90277

AAATGGAAGCACATGCAGGAGCCAACCAAAGGATTGCAAGAATCTCTGCTCATCTTCACCCTTCCAATTTGCAGGTTTTTTTTTTCTTCCTTTGGTTTCATTCAGCTAACGTAGCTAGAAAGTTCAATGATATTGGTTTGTATTACTTGCATGATAAACTTGAGTTTTCACTGTTGTCCAATATTGTTTTTTTATAGGCAAATGTTAGTAATTAATTAATTGTTGCCGAATATTATTGATTGATAAGTGTGTATAAGGTTTTAAATTTTGCGAATTCGCATAGCAAATCTTGATATTACAGATAATAACAGTCAAATGCAGCCGATAGGGTATAAATTAGGGCCGCGTTGCGGCTGCAAATATATCAAAACCAAGAACTTCGATGTCACTGCTTAAATTTCGGCCCAAATCACGGTGGCAGACATTTTATCTTAAAATTATTGTGTATGAATGCTATGTCTGTTTTGTGATGACAGGAAGGAGGTGATGTTGTAATTGACAGAGCTAACTGCAGAGCCAAAGGTGGGGCACCTGGATTCAAAGTAGCAGTATTGGGGGCTGCTGGTGGAATTGGTCAATCCCTTTCTTTGCTGTTGAAGATGAACCCATTGGTTTCAGTTCTTCATCTTTACGATGTCGTCAACACCCCTGGTGTCACAGCTGATGTTAGTCACATGGACACCGGTGCTGTGGTAATTTTTCTTTTTCATCACTTTTCTATTTTTTTTTTCTATTTAACATAATGTTGATATCATCTAAAATTGTATCAAAAAAATTTAAATCATATTTGGTTGTGTGCCGCGTTGACATTTCTCATGTTCCTATGCACTTTGAACGTGACTTTATTGAAGCAACAAATTTCAGCTTCAGTAATGGCACGGTGACACCGTGAATTTACAAGTTTCCAAACACGCACTTAGTAGTGGCTGTGCTAATTCATAGTGGATAGTAACAGTTGTGTTTTTCTTTGGTTCAACCTGGATTCTGTTCAAGCCACTATTTATTTGAAGGATATGCGAGTTGTTTTAACAATGTTTAGCTTCTATTATGTTCGAATGATGCAAGTATATTTGGGTTTCTAGGTTCGCGGCTTTTTGGGGCAACCACAACTTGAGAATGCACTCACAGGCATGGACTTGGTAGTTATACCTGCTGGTGTGCCAAGGAAACCTGGAATGACCAGGGACGACTTATTTAAGATAAATGCTGGAATTGTGAGGACTCTTTGTGAAGGAATTGCCAAGTGTTGCCCCAATGCGATTGTCAACTTGATTAGCAATCCAGTGAATTCCACTGTGCCAATTGCTGCTGAGGTCTTCAAGAAAGCTGGTACATATGATCCAAAGCGACTTTTAGGAGTTACAGCCCTTGATGTTGTGAGGGCAAATACTTTTGTGGTAAGCATAGCTTTCCTCTTCTATCTCGTAATTGAATTTCCTTCCTACTATTGTATGAGTATATGCTGGTGTATTTTATTTTATTTTTCTCTTGCAGGCAGAGGTACTTGGTGTTGATCCAAGAGAAGTTGATGTTCCAGTGGTAGGAGGTCATGCAGGAGTCACAATATTGCCTCTTTTATCACAGGTTTTGTAAAGGATGCTTGATACTTCCTTACTTAAAATTTATGACATCGTTAAACAAGTCACTAAACCTTCTTCAAACTTGGTTTTTAAAGGTTAAGCCTCCTAGTAGCTTCACTGCAGAAGAAACCGAATACCTGACAAATCGCATTCAAAATGGTGGAACAGAAGTTGTTGAGGTAATGTTCATATAAGTAACGAGTTTATCACCTAATATGCGATTGGAGTATAAGAAGGATAAGCTTGTTAACGGATTGATAATTTACACTGAACTTCATTTCTTTACTTCTAATTTTATTTGGCTTATGACTGATTAACTATAATCTAATAAATATTATTCATACTACAGGCTAAAGCTGGGGCTGGTTCTGCAACACTATCAATGGTTAATAGTTTATCTCAATATTTCTAAAGTTCCACGCACACTCAATTGGTATCAATTGTGTCCCGGTAGAGGGACTAACTAAACATGATTGATTGTGTAGGCATATGCAGCTGCTAAGTTTGCTAACTCATGCCTCCATGGCTTGAAAGGAGAAGCTGGAGTGGTGGAGTGTGCTTATGTTGATTCTCAGGTGCCAATTCCAAGTCCTTTTTTCCCTTATGCATGCTCTTTATCTTCCCTTTCATATCAAAATTTACAGCAGCGCGTGTCTTCAATAGGTCACGGAACTTCCTTTCTTTGCAACCAAGGTTCGTCTTGGTCGTGCTGGAGCAGAAGAAATATTTCCACTGGGTCCCCTCAATGAGTATGAGAGGTATTCCAATAGTTTATCAAACTATTAATTTCTTTATTGGAAGCAACAAACAAAGGAAAATGTTAGAATTTTGATGTTTAATACTTAACAGGATTGGGTTGGAAAAAGCGAAGAAAGAGTTGGCAGGAAGCATCCAGAAGGGAGTAGAATTCATTAAAAAATAAGTCAGATAAGGAAAAAAATAGTTTTGATTTGTCTCTTATCTATATCTGTAATAAACTTGTGTAATAATTCCCTCTGTTTATAGTATATCTTTCTTAAGAACAGTACTCTAAATTTTTGGTGTTATCCATAGCTTAGCTGTTGATGTAACGGATATGACATCAGTAAAACCTTGTAATATATTTTGAAAGTGAAAGGCGTTACAATGTTGGCCATTTTACTATTTTCCAGATCAAATTTTGTCTAATCCTTCACTTCACATATTCAATGAAAAAAATATTTCTTTTGTACATTTTTGTCTACTTATGAAGAATTTGCAATTTTAGTTCCGAATAATTTTATGAATGTTCAAATGCTGTAGATATTTATCTCCTCAATCCTTCAATGTTTTTTCTGTTAAATATTTAATGAATCGTGATAATTTTATGATGGCATTGATATCATTATTTTTATGCAACACATACACATTGTGTTCAAGCAACCTTCCATAGCGACTGTGGAATGCGACTTGTATGAGAAGCATGTAAAAAAACTACACTGTGTTGTAACATATACAATTAATTAAACCAACCAAACATTTTAACTGTATATATTTTGGTACATACTTTGCAGGAGTTTTGA

Protein sequence

>MS.gene90277.t1

KWKHMQEPTKGLQESLLIFTLPICRKEVMLULTELTAEPKVGHLDSKUQYWGLLVELVNPFLCCURUTHWFQFFIFTMSSTPLVSQLMLVTWTPVLWFAAFWGNHNLRMHSQAWTWULYLLVCQGNLEUPGTTYLRUMLELUGLFVKELPSVAPMRLSTULAIQUIPLCQLLLRSSRKLVHMIQSDFUELQPLMLUGQILLWQRYLVLIQEKLMFQWUEVMQESQYCLFYHRLSLLVASLQKKPNTUQIAFKMVEQKLLRLKLGLVLQHYQWHMQLLSLLTHASMAUKEKLEWWSVLMLILRSRNFLSLQPRFVLVVLEQKKYFHWVPSMSMRGLGWKKRRKSWQEASRRDNLPURLWNATCMRSMSF