AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene068224


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068224.t1 MTR_1g048970 90.094 212 18 1 1 209 1 212 1.74e-141 393
MS.gene068224.t1 MTR_5g019990 39.375 160 86 3 56 205 26 184 5.52e-31 112
MS.gene068224.t1 MTR_5g019990 38.235 136 71 4 56 180 26 159 1.12e-21 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068224.t1 AT5G51110 68.023 172 54 1 39 209 22 193 1.95e-85 251
MS.gene068224.t1 AT5G51110 63.492 189 67 2 23 209 32 220 9.03e-84 248
MS.gene068224.t1 AT1G29810 37.903 124 76 1 84 206 22 145 3.21e-29 106
MS.gene068224.t1 AT1G29810 38.655 119 72 1 89 206 66 184 9.73e-29 106

Find 52 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAAAGAGCAGAGATATT+TGG 0.213526 1.2:+32523005 None:intergenic
CAGTTTGGAGAGAAAGTTAT+AGG 0.263947 1.2:-32523059 MS.gene068224:CDS
TGCTCTTTCTCTTTCTCAAC+AGG 0.290739 1.2:-32522994 MS.gene068224:CDS
GAGAAAGAGCAGAGATATTT+GGG 0.293549 1.2:+32523006 None:intergenic
GGTTGTTCTATGTGGATATT+GGG 0.302096 1.2:+32520426 None:intergenic
TGGTTGTTCTATGTGGATAT+TGG 0.345309 1.2:+32520425 None:intergenic
AGTTCTGCTCTGACTTGATT+TGG 0.348094 1.2:+32520405 None:intergenic
AGGGTTGAGTTTGGTGGTGT+TGG 0.350306 1.2:+32523196 None:intergenic
GGGTTGAGTTTGGTGGTGTT+GGG 0.361314 1.2:+32523197 None:intergenic
GAGCAGAGATATTTGGGATA+AGG 0.364640 1.2:+32523012 None:intergenic
GGGGACTGTAAAGGTGAAAT+GGG 0.394511 1.2:+32522963 None:intergenic
ATTGAATGAAGGGTTGAGTT+TGG 0.402466 1.2:+32523187 None:intergenic
GCTGAGTTGGAAAGTCAGTT+TGG 0.429565 1.2:-32523074 MS.gene068224:CDS
AACTGACTTTCCAACTCAGC+TGG 0.450920 1.2:+32523077 None:intergenic
CTTGATTTGGTTGTTCTATG+TGG 0.454566 1.2:+32520418 None:intergenic
TTTCAGAACCGTACTCCAAA+CGG 0.461066 1.2:-32523164 MS.gene068224:CDS
TTCAGAACCGTACTCCAAAC+GGG 0.462057 1.2:-32523163 MS.gene068224:CDS
CGAAGTGGAGAGAACCCGTT+TGG 0.465122 1.2:+32523149 None:intergenic
ATGTTACCTTTCTTATAAGC+TGG 0.467127 1.2:+32522919 None:intergenic
TGTCCCAAGGAAAAGAGCTT+GGG 0.472741 1.2:-32519459 MS.gene068224:CDS
GGGACTGTAAAGGTGAAATG+GGG 0.478411 1.2:+32522964 None:intergenic
CGGTTCTGAAAATTGAATGA+AGG 0.495691 1.2:+32523176 None:intergenic
TTGGGATTTATCTGTAACAC+GGG 0.496700 1.2:+32523215 None:intergenic
GAGAGAACCCGTTTGGAGTA+CGG 0.497420 1.2:+32523156 None:intergenic
TACTTAAACTTCGATGCTTG+TGG 0.499142 1.2:-32520524 MS.gene068224:CDS
CTTTCCAACTCAGCTGGGAA+AGG 0.499229 1.2:+32523083 None:intergenic
TGCTAACCAGCTTATAAGAA+AGG 0.502324 1.2:-32522925 MS.gene068224:intron
GGTTAGCATCATCTTGAGAA+AGG 0.509678 1.2:+32522940 None:intergenic
AGACCCTTTCCCAGCTGAGT+TGG 0.518212 1.2:-32523087 MS.gene068224:CDS
TTTCCAACTCAGCTGGGAAA+GGG 0.519124 1.2:+32523084 None:intergenic
GTTAGCATCATCTTGAGAAA+GGG 0.522512 1.2:+32522941 None:intergenic
TTGTCCCAAGGAAAAGAGCT+TGG 0.523587 1.2:-32519460 MS.gene068224:CDS
GGTTCTGAAAATTGAATGAA+GGG 0.540341 1.2:+32523177 None:intergenic
GAAGGATAATAATACAAGCT+TGG 0.542503 1.2:+32523238 None:intergenic
ATTTATCTGTAACACGGGGA+AGG 0.574185 1.2:+32523220 None:intergenic
TGGAGACTTGTGAATGATGA+AGG 0.574412 1.2:-32520549 MS.gene068224:CDS
GAATGAAGGGTTGAGTTTGG+TGG 0.578352 1.2:+32523190 None:intergenic
TCTACGGTTGTAGAGACTGC+AGG 0.582828 1.2:-32520456 MS.gene068224:CDS
ACTCATTAACAGAATCTCTA+CGG 0.587267 1.2:-32520472 MS.gene068224:CDS
ACTGACTTTCCAACTCAGCT+GGG 0.590933 1.2:+32523078 None:intergenic
GTTGTTCTATGTGGATATTG+GGG 0.611420 1.2:+32520427 None:intergenic
GGACTGTAAAGGTGAAATGG+GGG 0.615160 1.2:+32522965 None:intergenic
GAACTGTGGACAACATCCAT+TGG 0.618268 1.2:-32520387 MS.gene068224:intron
AGCATCATCTTGAGAAAGGG+GGG 0.631020 1.2:+32522944 None:intergenic
TTAGCATCATCTTGAGAAAG+GGG 0.631573 1.2:+32522942 None:intergenic
CAAACGGGTTCTCTCCACTT+CGG 0.636865 1.2:-32523148 MS.gene068224:CDS
ATCAAGTCAGAGCAGAACTG+TGG 0.651857 1.2:-32520401 MS.gene068224:CDS
TAGCATCATCTTGAGAAAGG+GGG 0.654155 1.2:+32522943 None:intergenic
GTTGGGATTTATCTGTAACA+CGG 0.665689 1.2:+32523214 None:intergenic
AGACATCAGATCTTGTCCCA+AGG 0.671698 1.2:-32519472 MS.gene068224:CDS
TCGTTGTTAAAAGACCGAAG+TGG 0.708298 1.2:+32523134 None:intergenic
TGGGATTTATCTGTAACACG+GGG 0.751053 1.2:+32523216 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTGTAAACATATTAT+TGG + chr1.2:32522751-32522770 None:intergenic 10.0%
!! AAAAAATTAAGCTGAAATTA+AGG + chr1.2:32520515-32520534 None:intergenic 15.0%
!! ACTTGTAATAATTTGAAAAA+TGG - chr1.2:32519863-32519882 MS.gene068224:intron 15.0%
!! TTTGATTAATTTATAGTTTG+AGG - chr1.2:32519987-32520006 MS.gene068224:intron 15.0%
!!! GATCATTATATATTTTTTCT+TGG - chr1.2:32520247-32520266 MS.gene068224:intron 15.0%
!!! TATAAAAAAAGTGTCTTTTA+AGG + chr1.2:32522541-32522560 None:intergenic 15.0%
!!! TATTTTCCAAATAAAAAAAC+AGG + chr1.2:32521668-32521687 None:intergenic 15.0%
!!! TTTTTTCTTTTCATTTATGT+AGG - chr1.2:32522122-32522141 MS.gene068224:intron 15.0%
!! AACTAATAACTAAGAATGAT+AGG + chr1.2:32522377-32522396 None:intergenic 20.0%
!! AATAGCTTATAATTCTTCAA+AGG - chr1.2:32520178-32520197 MS.gene068224:intron 20.0%
!! AATAGTTGTGTAGTTTATAT+TGG - chr1.2:32520132-32520151 MS.gene068224:intron 20.0%
!! ATCTAAATCTTATGTCAAAA+CGG + chr1.2:32521794-32521813 None:intergenic 20.0%
!! GTAATAATTTGAAAAATGGA+CGG - chr1.2:32519867-32519886 MS.gene068224:intron 20.0%
!! TATGATTAAATACTACTTGT+TGG - chr1.2:32520850-32520869 MS.gene068224:intron 20.0%
!! TGTTACAAATTAATCACTAA+CGG - chr1.2:32521059-32521078 MS.gene068224:intron 20.0%
!! TTAAAGCATGACATTTAAAA+GGG - chr1.2:32523141-32523160 MS.gene068224:CDS 20.0%
!! TTTCAATATTACATTAACCA+TGG - chr1.2:32522433-32522452 MS.gene068224:intron 20.0%
!!! AATTAGTAACATTTTGAACA+AGG + chr1.2:32521241-32521260 None:intergenic 20.0%
!!! ATTTGAAGTATGAATCAATA+AGG - chr1.2:32521398-32521417 MS.gene068224:intron 20.0%
!!! GAAATAAAGTTTAAGATGAA+AGG + chr1.2:32521176-32521195 None:intergenic 20.0%
!!! TTAGTGATTAATTTGTAACA+GGG + chr1.2:32521059-32521078 None:intergenic 20.0%
!!! TTTAAAGCATGACATTTAAA+AGG - chr1.2:32523140-32523159 MS.gene068224:CDS 20.0%
!!! TTTGAAGTATGAATCAATAA+GGG - chr1.2:32521399-32521418 MS.gene068224:intron 20.0%
!!! TTTGTTACTATTAGCATTTT+CGG - chr1.2:32521721-32521740 MS.gene068224:intron 20.0%
!!! TTTTCATTTATGTAGGTTTT+GGG - chr1.2:32522129-32522148 MS.gene068224:intron 20.0%
! AATAACTAAGAATGATAGGA+GGG + chr1.2:32522373-32522392 None:intergenic 25.0%
! AGAGTAGAGCATAATAAAAA+TGG + chr1.2:32521511-32521530 None:intergenic 25.0%
! CAAAATATGTTTCAATCAGA+AGG - chr1.2:32520329-32520348 MS.gene068224:intron 25.0%
! GAAGTATAAAGCATATTCAT+AGG - chr1.2:32520020-32520039 MS.gene068224:intron 25.0%
! GATATTTGTATAATCACAGA+CGG - chr1.2:32522778-32522797 MS.gene068224:intron 25.0%
! GATTATAATTATTTGCAAGC+CGG - chr1.2:32522712-32522731 MS.gene068224:intron 25.0%
! GCATATAAGTTATAAGACTT+AGG - chr1.2:32520938-32520957 MS.gene068224:intron 25.0%
! GTGAATATGTACATTGTTTA+CGG - chr1.2:32520471-32520490 MS.gene068224:CDS 25.0%
! GTGTTATAAATAGCTTCTTA+TGG + chr1.2:32522046-32522065 None:intergenic 25.0%
! TAATAACTAAGAATGATAGG+AGG + chr1.2:32522374-32522393 None:intergenic 25.0%
! TAGAGCATAATAAAAATGGT+TGG + chr1.2:32521507-32521526 None:intergenic 25.0%
! TATTGGTACAAATTATATGC+CGG + chr1.2:32522734-32522753 None:intergenic 25.0%
! TCAAAGATATATCTAGTGTA+TGG + chr1.2:32519928-32519947 None:intergenic 25.0%
! TCGATGATATTAAATGTAGT+AGG + chr1.2:32522808-32522827 None:intergenic 25.0%
! TCTAAATCTTATGTCAAAAC+GGG + chr1.2:32521793-32521812 None:intergenic 25.0%
! TTATTTCACCAAAGAGAAAA+TGG - chr1.2:32521189-32521208 MS.gene068224:intron 25.0%
! TTGTGCATATATTGAAGTTA+AGG - chr1.2:32521539-32521558 MS.gene068224:intron 25.0%
! TTGTTGGAAGACAATATATT+AGG - chr1.2:32520866-32520885 MS.gene068224:intron 25.0%
!! AAATTGAGAGATTTTAAACG+CGG - chr1.2:32522201-32522220 MS.gene068224:intron 25.0%
!! ACTAATATTTTGTGACAAAG+TGG - chr1.2:32520225-32520244 MS.gene068224:intron 25.0%
!! CTTTTCATTTATGTAGGTTT+TGG - chr1.2:32522128-32522147 MS.gene068224:intron 25.0%
!! TCTTTTAACAACGATTTCTT+GGG - chr1.2:32519577-32519596 MS.gene068224:intron 25.0%
!! TGATTGAAACATATTTTGTC+CGG + chr1.2:32520327-32520346 None:intergenic 25.0%
!! TTTTCATTGGTCAAAAACAA+TGG + chr1.2:32520641-32520660 None:intergenic 25.0%
!!! ACCTCAAGTTTTATGAATTT+GGG - chr1.2:32521819-32521838 MS.gene068224:intron 25.0%
!!! GTTAGTGATTAATTTGTAAC+AGG + chr1.2:32521060-32521079 None:intergenic 25.0%
!!! GTTGAACCTGTTTTTTTATT+TGG - chr1.2:32521659-32521678 MS.gene068224:intron 25.0%
AAAACAATGGAGAGAGAAAA+AGG + chr1.2:32520628-32520647 None:intergenic 30.0%
AAACTTGAAACTTTGCTCAA+CGG + chr1.2:32522624-32522643 None:intergenic 30.0%
AAGTTATAAGACTTAGGTCT+CGG - chr1.2:32520944-32520963 MS.gene068224:intron 30.0%
AATGAAAAGAGAGAAAAGGA+AGG - chr1.2:32520653-32520672 MS.gene068224:intron 30.0%
ACACTTGTATTACCAATTGT+TGG - chr1.2:32522575-32522594 MS.gene068224:intron 30.0%
ACCCAAATTCATAAAACTTG+AGG + chr1.2:32521823-32521842 None:intergenic 30.0%
ACTCATTAACAGAATCTCTA+CGG - chr1.2:32522230-32522249 MS.gene068224:intron 30.0%
AGTCACAGATTACTTACAAA+GGG + chr1.2:32521105-32521124 None:intergenic 30.0%
ATGTTACCTTTCTTATAAGC+TGG + chr1.2:32519786-32519805 None:intergenic 30.0%
ATTACTTATCGACACTATAC+CGG - chr1.2:32520305-32520324 MS.gene068224:intron 30.0%
CTCATTAAGTATTAGCAACT+GGG + chr1.2:32521945-32521964 None:intergenic 30.0%
GAAGGATAATAATACAAGCT+TGG + chr1.2:32519467-32519486 None:intergenic 30.0%
GCATGATATATACATCTTCA+TGG + chr1.2:32521325-32521344 None:intergenic 30.0%
GTCAAATAGGTTGTACTAAA+TGG - chr1.2:32520678-32520697 MS.gene068224:intron 30.0%
GTCTAAAAGTTGTTACAAAG+TGG + chr1.2:32520563-32520582 None:intergenic 30.0%
TAGTCACAGATTACTTACAA+AGG + chr1.2:32521106-32521125 None:intergenic 30.0%
TATAGGGTTTAACACTATCA+TGG - chr1.2:32522868-32522887 MS.gene068224:intron 30.0%
TCAACTGTTGAATTTACTTG+TGG - chr1.2:32520430-32520449 MS.gene068224:CDS 30.0%
TCATTAAGTATTAGCAACTG+GGG + chr1.2:32521944-32521963 None:intergenic 30.0%
TCTCTAAGCAACTATATACA+TGG - chr1.2:32519812-32519831 MS.gene068224:intron 30.0%
! AAAAGGGTTCAATATTTTGC+AGG - chr1.2:32523157-32523176 MS.gene068224:CDS 30.0%
! CAAGATGAGAACATGTTTTT+AGG + chr1.2:32523117-32523136 None:intergenic 30.0%
! CTTTTAACAACGATTTCTTG+GGG - chr1.2:32519578-32519597 MS.gene068224:intron 30.0%
! GGTAATACAAGTGTCTTTTA+AGG + chr1.2:32522569-32522588 None:intergenic 30.0%
! GTCTTTTAACAACGATTTCT+TGG - chr1.2:32519576-32519595 MS.gene068224:intron 30.0%
! TTCCTTTTCTCTCTTTTCAT+TGG + chr1.2:32520654-32520673 None:intergenic 30.0%
! TTTTAACAACGATTTCTTGG+GGG - chr1.2:32519579-32519598 MS.gene068224:intron 30.0%
!! AACTGTCGAGTTTAAGTTTT+TGG + chr1.2:32523012-32523031 None:intergenic 30.0%
!! ACTGTCGAGTTTAAGTTTTT+GGG + chr1.2:32523011-32523030 None:intergenic 30.0%
!! AGGGGGGTATTAAAAATAAT+AGG + chr1.2:32521901-32521920 None:intergenic 30.0%
!! CACCTCAAGTTTTATGAATT+TGG - chr1.2:32521818-32521837 MS.gene068224:intron 30.0%
!! GGTTCTGAAAATTGAATGAA+GGG + chr1.2:32519528-32519547 None:intergenic 30.0%
!! TGATTAATTTGTAACAGGGA+GGG + chr1.2:32521055-32521074 None:intergenic 30.0%
!!! TGAGAACATGTTTTTAGGAA+CGG + chr1.2:32523112-32523131 None:intergenic 30.0%
ACAAGGATTAAGTCATGTTC+AGG + chr1.2:32521224-32521243 None:intergenic 35.0%
ACTCGAATAGATAGTGCTTT+CGG - chr1.2:32521623-32521642 MS.gene068224:intron 35.0%
AGAAGCTAGACAGTGTAAAA+TGG + chr1.2:32522097-32522116 None:intergenic 35.0%
AGAATGTAGATGTGTGAATC+AGG - chr1.2:32520795-32520814 MS.gene068224:intron 35.0%
AGAGAAAGAGCAGAGATATT+TGG + chr1.2:32519700-32519719 None:intergenic 35.0%
AGGACTATGTAGGATATCTT+GGG - chr1.2:32521004-32521023 MS.gene068224:intron 35.0%
ATTGAATGAAGGGTTGAGTT+TGG + chr1.2:32519518-32519537 None:intergenic 35.0%
CAGTTTGGAGAGAAAGTTAT+AGG - chr1.2:32519643-32519662 MS.gene068224:intron 35.0%
GAAAAGGAAGGTTGTCAAAT+AGG - chr1.2:32520665-32520684 MS.gene068224:intron 35.0%
GACCAATGAAAAGAGAGAAA+AGG - chr1.2:32520649-32520668 MS.gene068224:intron 35.0%
GACGATGAAGACAATTATGA+TGG - chr1.2:32520083-32520102 MS.gene068224:intron 35.0%
GAGAAAGAGCAGAGATATTT+GGG + chr1.2:32519699-32519718 None:intergenic 35.0%
GAGGAAAGAGGAATGATAAA+GGG + chr1.2:32522899-32522918 None:intergenic 35.0%
GATTGCAAGTTCTCAGTATA+GGG - chr1.2:32522852-32522871 MS.gene068224:intron 35.0%
GCTCATTAAGTATTAGCAAC+TGG + chr1.2:32521946-32521965 None:intergenic 35.0%
GGACTTCTATGAAATTTGCA+GGG + chr1.2:32522076-32522095 None:intergenic 35.0%
GGTTGTTCTATGTGGATATT+GGG + chr1.2:32522279-32522298 None:intergenic 35.0%
GTCACAGATTACTTACAAAG+GGG + chr1.2:32521104-32521123 None:intergenic 35.0%
GTTAGCATCATCTTGAGAAA+GGG + chr1.2:32519764-32519783 None:intergenic 35.0%
GTTGGGATTTATCTGTAACA+CGG + chr1.2:32519491-32519510 None:intergenic 35.0%
GTTGTTCTATGTGGATATTG+GGG + chr1.2:32522278-32522297 None:intergenic 35.0%
TACATAATCTCCATTAGGGA+AGG + chr1.2:32522921-32522940 None:intergenic 35.0%
TACTTAAACTTCGATGCTTG+TGG - chr1.2:32522178-32522197 MS.gene068224:intron 35.0%
TAGTGAAATCAGAGTTTGCA+CGG + chr1.2:32522955-32522974 None:intergenic 35.0%
TCATTCCAAGTGCACTAATT+TGG + chr1.2:32521145-32521164 None:intergenic 35.0%
TGATTGCAAGTTCTCAGTAT+AGG - chr1.2:32522851-32522870 MS.gene068224:intron 35.0%
TGCTAACCAGCTTATAAGAA+AGG - chr1.2:32519777-32519796 MS.gene068224:intron 35.0%
TGGACTTCTATGAAATTTGC+AGG + chr1.2:32522077-32522096 None:intergenic 35.0%
TGGTTGTTCTATGTGGATAT+TGG + chr1.2:32522280-32522299 None:intergenic 35.0%
TGTGACTCTGTTTGATGAAT+GGG - chr1.2:32521752-32521771 MS.gene068224:intron 35.0%
TTACATTAACCATGGTGAGA+TGG - chr1.2:32522441-32522460 MS.gene068224:intron 35.0%
TTAGCATCATCTTGAGAAAG+GGG + chr1.2:32519763-32519782 None:intergenic 35.0%
TTCCCTAATGGAGATTATGT+AGG - chr1.2:32522920-32522939 MS.gene068224:intron 35.0%
TTGGGATTTATCTGTAACAC+GGG + chr1.2:32519490-32519509 None:intergenic 35.0%
TTTGAATGCTACTCAAAGTC+TGG - chr1.2:32521449-32521468 MS.gene068224:intron 35.0%
! AGTGGTATAGTTTGAGATAC+CGG - chr1.2:32520978-32520997 MS.gene068224:intron 35.0%
! ATGTGACCAGCTAAGTTTTT+CGG - chr1.2:32522685-32522704 MS.gene068224:intron 35.0%
! GATCTAAGTGTAGTTCTACT+CGG + chr1.2:32522602-32522621 None:intergenic 35.0%
! GATTAAGAAAGTGCATGATG+AGG - chr1.2:32521262-32521281 MS.gene068224:intron 35.0%
!! ATAAGAAGGGTACTGGTTTA+AGG + chr1.2:32522345-32522364 None:intergenic 35.0%
!! CGGTTCTGAAAATTGAATGA+AGG + chr1.2:32519529-32519548 None:intergenic 35.0%
!! CTTGATTTGGTTGTTCTATG+TGG + chr1.2:32522287-32522306 None:intergenic 35.0%
!! GTGATTAATTTGTAACAGGG+AGG + chr1.2:32521056-32521075 None:intergenic 35.0%
!!! AGTTTCAAGTTTTTGCCTTG+TGG - chr1.2:32522632-32522651 MS.gene068224:intron 35.0%
!!! CATTTATGTAGGTTTTGGGT+TGG - chr1.2:32522133-32522152 MS.gene068224:intron 35.0%
!!! GAGAACATGTTTTTAGGAAC+GGG + chr1.2:32523111-32523130 None:intergenic 35.0%
!!! GGTATTTGCCATTTTCTCTT+TGG + chr1.2:32521200-32521219 None:intergenic 35.0%
!!! GTTTCAAGTTTTTGCCTTGT+GGG - chr1.2:32522633-32522652 MS.gene068224:intron 35.0%
AATTTGGCAAGGGCTTACAA+GGG + chr1.2:32521129-32521148 None:intergenic 40.0%
ACAGATGCAGTACTTTACTC+TGG - chr1.2:32520751-32520770 MS.gene068224:intron 40.0%
AGGATTAAGTCATGTTCAGG+AGG + chr1.2:32521221-32521240 None:intergenic 40.0%
ATAATCTCCATTAGGGAAGG+AGG + chr1.2:32522918-32522937 None:intergenic 40.0%
ATAGGAGGGAGAAGATAAGA+AGG + chr1.2:32522359-32522378 None:intergenic 40.0%
ATTTATCTGTAACACGGGGA+AGG + chr1.2:32519485-32519504 None:intergenic 40.0%
CAAGTGCACTAATTTGGCAA+GGG + chr1.2:32521139-32521158 None:intergenic 40.0%
CACTAGAGTTTGAGAACACT+GGG - chr1.2:32523042-32523061 MS.gene068224:CDS 40.0%
CGCCTACATAATCTCCATTA+GGG + chr1.2:32522925-32522944 None:intergenic 40.0%
CTCGAATAGATAGTGCTTTC+GGG - chr1.2:32521624-32521643 MS.gene068224:intron 40.0%
CTGGTAAGGATCGAAACAAT+TGG - chr1.2:32520916-32520935 MS.gene068224:intron 40.0%
CTGTGACTCTGTTTGATGAA+TGG - chr1.2:32521751-32521770 MS.gene068224:intron 40.0%
GAGGACTATGTAGGATATCT+TGG - chr1.2:32521003-32521022 MS.gene068224:intron 40.0%
GATAACCAAATGTGCATCTG+AGG + chr1.2:32521582-32521601 None:intergenic 40.0%
GGAGGAAAGAGGAATGATAA+AGG + chr1.2:32522900-32522919 None:intergenic 40.0%
GGTTAGCATCATCTTGAGAA+AGG + chr1.2:32519765-32519784 None:intergenic 40.0%
GTCTCGGAAAGATTAGTAAG+TGG - chr1.2:32520960-32520979 MS.gene068224:intron 40.0%
TAATTTGGCAAGGGCTTACA+AGG + chr1.2:32521130-32521149 None:intergenic 40.0%
TAGCATCATCTTGAGAAAGG+GGG + chr1.2:32519762-32519781 None:intergenic 40.0%
TAGGAGGGAGAAGATAAGAA+GGG + chr1.2:32522358-32522377 None:intergenic 40.0%
TCGTTGTTAAAAGACCGAAG+TGG + chr1.2:32519571-32519590 None:intergenic 40.0%
TGCTCTTTCTCTTTCTCAAC+AGG - chr1.2:32519708-32519727 MS.gene068224:intron 40.0%
TGGAGACTTGTGAATGATGA+AGG - chr1.2:32522153-32522172 MS.gene068224:intron 40.0%
TGGGATTTATCTGTAACACG+GGG + chr1.2:32519489-32519508 None:intergenic 40.0%
TGGTGAGATGGACATTGAAA+AGG - chr1.2:32522453-32522472 MS.gene068224:intron 40.0%
TTAGCTGGTCACATTTAGTG+TGG + chr1.2:32522679-32522698 None:intergenic 40.0%
TTAGGAGCTTAAAACCACCA+AGG - chr1.2:32520884-32520903 MS.gene068224:intron 40.0%
TTTCAATGTCCATCTCACCA+TGG + chr1.2:32522453-32522472 None:intergenic 40.0%
TTTCAGAACCGTACTCCAAA+CGG - chr1.2:32519538-32519557 MS.gene068224:intron 40.0%
! AACGATTTCTTGGGGGATTT+TGG - chr1.2:32519586-32519605 MS.gene068224:intron 40.0%
! ACTGGTTTAAGGCTTACCAA+TGG + chr1.2:32522334-32522353 None:intergenic 40.0%
! AGGGTTCAATATTTTGCAGG+TGG - chr1.2:32523160-32523179 MS.gene068224:CDS 40.0%
! AGTTCTGCTCTGACTTGATT+TGG + chr1.2:32522300-32522319 None:intergenic 40.0%
! GAGCAGAGATATTTGGGATA+AGG + chr1.2:32519693-32519712 None:intergenic 40.0%
! TGAGCATCACTGATTACCAT+GGG + chr1.2:32520413-32520432 None:intergenic 40.0%
! TTGAGCATCACTGATTACCA+TGG + chr1.2:32520414-32520433 None:intergenic 40.0%
!! TATTTTTAATACCCCCCTCC+TGG - chr1.2:32521903-32521922 MS.gene068224:intron 40.0%
!! TTAATTTGTAACAGGGAGGG+AGG + chr1.2:32521052-32521071 None:intergenic 40.0%
!!! TAGTTTTAAGTCTCTGCCCA+TGG - chr1.2:32520394-32520413 MS.gene068224:CDS 40.0%
AGACATCAGATCTTGTCCCA+AGG - chr1.2:32523230-32523249 MS.gene068224:CDS 45.0%
AGCATCATCTTGAGAAAGGG+GGG + chr1.2:32519761-32519780 None:intergenic 45.0%
AGGATCAAACACTTGTCGCA+TGG - chr1.2:32521282-32521301 MS.gene068224:intron 45.0%
ATCAAGTCAGAGCAGAACTG+TGG - chr1.2:32522301-32522320 MS.gene068224:intron 45.0%
ATCAGAGTTTGCACGGAGTT+TGG + chr1.2:32522948-32522967 None:intergenic 45.0%
CCAAGTGCACTAATTTGGCA+AGG + chr1.2:32521140-32521159 None:intergenic 45.0%
CCTTGCCAAATTAGTGCACT+TGG - chr1.2:32521137-32521156 MS.gene068224:intron 45.0%
CTTACCAGCTCAATCAACCT+TGG + chr1.2:32520904-32520923 None:intergenic 45.0%
GAACTGTGGACAACATCCAT+TGG - chr1.2:32522315-32522334 MS.gene068224:intron 45.0%
GAATGAAGGGTTGAGTTTGG+TGG + chr1.2:32519515-32519534 None:intergenic 45.0%
GCACTAGAGTTTGAGAACAC+TGG - chr1.2:32523041-32523060 MS.gene068224:CDS 45.0%
GCGCCTACATAATCTCCATT+AGG + chr1.2:32522926-32522945 None:intergenic 45.0%
GGACTGTAAAGGTGAAATGG+GGG + chr1.2:32519740-32519759 None:intergenic 45.0%
GGGACTGTAAAGGTGAAATG+GGG + chr1.2:32519741-32519760 None:intergenic 45.0%
GGGGACTGTAAAGGTGAAAT+GGG + chr1.2:32519742-32519761 None:intergenic 45.0%
GTTCTACTCGGACCAACAAT+TGG + chr1.2:32522590-32522609 None:intergenic 45.0%
TATCCTACATAGTCCTCCTC+CGG + chr1.2:32521000-32521019 None:intergenic 45.0%
TGTCCCAAGGAAAAGAGCTT+GGG - chr1.2:32523243-32523262 MS.gene068224:CDS 45.0%
TTCAGAACCGTACTCCAAAC+GGG - chr1.2:32519539-32519558 MS.gene068224:intron 45.0%
TTCTGCCTCAGATGCACATT+TGG - chr1.2:32521574-32521593 MS.gene068224:intron 45.0%
TTGTCCCAAGGAAAAGAGCT+TGG - chr1.2:32523242-32523261 MS.gene068224:CDS 45.0%
TTTCCAACTCAGCTGGGAAA+GGG + chr1.2:32519621-32519640 None:intergenic 45.0%
! AACTGACTTTCCAACTCAGC+TGG + chr1.2:32519628-32519647 None:intergenic 45.0%
! AAGCCCAAGCTCTTTTCCTT+GGG + chr1.2:32523249-32523268 None:intergenic 45.0%
! ACTGACTTTCCAACTCAGCT+GGG + chr1.2:32519627-32519646 None:intergenic 45.0%
! ATAGTTTGAGATACCGGAGG+AGG - chr1.2:32520984-32521003 MS.gene068224:intron 45.0%
! CAAGGTTGATTGAGCTGGTA+AGG - chr1.2:32520902-32520921 MS.gene068224:intron 45.0%
! CTTTTCCAGCAAAACCAGGA+GGG + chr1.2:32521920-32521939 None:intergenic 45.0%
! GCTGAGTTGGAAAGTCAGTT+TGG - chr1.2:32519628-32519647 MS.gene068224:intron 45.0%
! GGAGAAGATAAGAAGGGTAC+TGG + chr1.2:32522352-32522371 None:intergenic 45.0%
! GGTATAGTTTGAGATACCGG+AGG - chr1.2:32520981-32521000 MS.gene068224:intron 45.0%
! TAAGCCCAAGCTCTTTTCCT+TGG + chr1.2:32523250-32523269 None:intergenic 45.0%
! TCAAGTTTTTGCCTTGTGGG+TGG - chr1.2:32522636-32522655 MS.gene068224:intron 45.0%
! TTTTCCAGCAAAACCAGGAG+GGG + chr1.2:32521919-32521938 None:intergenic 45.0%
!! TGACCAGCTAAGTTTTTCGG+CGG - chr1.2:32522688-32522707 MS.gene068224:intron 45.0%
ACCAGCTCAATCAACCTTGG+TGG + chr1.2:32520901-32520920 None:intergenic 50.0%
ATACCGGAGGAGGACTATGT+AGG - chr1.2:32520994-32521013 MS.gene068224:intron 50.0%
CCATTAGGGAAGGAGGAAAG+AGG + chr1.2:32522911-32522930 None:intergenic 50.0%
CCTCTTTCCTCCTTCCCTAA+TGG - chr1.2:32522908-32522927 MS.gene068224:intron 50.0%
CCTTGTGGGTGGAAAAAACG+TGG - chr1.2:32522647-32522666 MS.gene068224:intron 50.0%
CTTTCCAACTCAGCTGGGAA+AGG + chr1.2:32519622-32519641 None:intergenic 50.0%
GGGGGACTGTAAAGGTGAAA+TGG + chr1.2:32519743-32519762 None:intergenic 50.0%
TCTACGGTTGTAGAGACTGC+AGG - chr1.2:32522246-32522265 MS.gene068224:intron 50.0%
TCTCCGCCGAAAAACTTAGC+TGG + chr1.2:32522694-32522713 None:intergenic 50.0%
TGAGAAAGGGGGGACTGTAA+AGG + chr1.2:32519751-32519770 None:intergenic 50.0%
TTTCCAGCAAAACCAGGAGG+GGG + chr1.2:32521918-32521937 None:intergenic 50.0%
! ACCACCAAGGTTGATTGAGC+TGG - chr1.2:32520897-32520916 MS.gene068224:intron 50.0%
! CAAACGGGTTCTCTCCACTT+CGG - chr1.2:32519554-32519573 MS.gene068224:intron 50.0%
! CCTTTTCCAGCAAAACCAGG+AGG + chr1.2:32521921-32521940 None:intergenic 50.0%
! GAGAGAACCCGTTTGGAGTA+CGG + chr1.2:32519549-32519568 None:intergenic 50.0%
!! AGGGTTGAGTTTGGTGGTGT+TGG + chr1.2:32519509-32519528 None:intergenic 50.0%
!! GGGTTGAGTTTGGTGGTGTT+GGG + chr1.2:32519508-32519527 None:intergenic 50.0%
!!! CCACGTTTTTTCCACCCACA+AGG + chr1.2:32522650-32522669 None:intergenic 50.0%
!!! CCTCCTGGTTTTGCTGGAAA+AGG - chr1.2:32521918-32521937 MS.gene068224:intron 50.0%
AACACTGGGCACCACTCTTG+TGG - chr1.2:32523056-32523075 MS.gene068224:CDS 55.0%
AGACCCTTTCCCAGCTGAGT+TGG - chr1.2:32519615-32519634 MS.gene068224:intron 55.0%
CGAAGTGGAGAGAACCCGTT+TGG + chr1.2:32519556-32519575 None:intergenic 55.0%
TTCCAGCAAAACCAGGAGGG+GGG + chr1.2:32521917-32521936 None:intergenic 55.0%
! GGGCCTTTTCCAGCAAAACC+AGG + chr1.2:32521924-32521943 None:intergenic 55.0%
GCCTAGACGTGCCTATGAGG+AGG + chr1.2:32523087-32523106 None:intergenic 60.0%
GCCTCCTCATAGGCACGTCT+AGG - chr1.2:32523083-32523102 MS.gene068224:CDS 60.0%
GGAGCCTAGACGTGCCTATG+AGG + chr1.2:32523090-32523109 None:intergenic 60.0%
TGGGCACCACTCTTGTGGCA+GGG - chr1.2:32523061-32523080 MS.gene068224:CDS 60.0%
TTGTGGCAGGGCCTCCTCAT+AGG - chr1.2:32523073-32523092 MS.gene068224:CDS 60.0%
!!! TACCCCCCTCCTGGTTTTGC+TGG - chr1.2:32521912-32521931 MS.gene068224:intron 60.0%
AGGAGGCCCTGCCACAAGAG+TGG + chr1.2:32523070-32523089 None:intergenic 65.0%
CTGGGCACCACTCTTGTGGC+AGG - chr1.2:32523060-32523079 MS.gene068224:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 32519454 32523270 32519454 ID=MS.gene068224
chr1.2 mRNA 32519454 32523270 32519454 ID=MS.gene068224.t1;Parent=MS.gene068224
chr1.2 exon 32522926 32523270 32522926 ID=MS.gene068224.t1.exon1;Parent=MS.gene068224.t1
chr1.2 CDS 32522926 32523270 32522926 ID=cds.MS.gene068224.t1;Parent=MS.gene068224.t1
chr1.2 exon 32520388 32520580 32520388 ID=MS.gene068224.t1.exon2;Parent=MS.gene068224.t1
chr1.2 CDS 32520388 32520580 32520388 ID=cds.MS.gene068224.t1;Parent=MS.gene068224.t1
chr1.2 exon 32519454 32519545 32519454 ID=MS.gene068224.t1.exon3;Parent=MS.gene068224.t1
chr1.2 CDS 32519454 32519545 32519454 ID=cds.MS.gene068224.t1;Parent=MS.gene068224.t1
Gene Sequence

>MS.gene068224

ATGGCTACAACCAAGCTTGTATTATTATCCTTCCCCGTGTTACAGATAAATCCCAACACCACCAAACTCAACCCTTCATTCAATTTTCAGAACCGTACTCCAAACGGGTTCTCTCCACTTCGGTCTTTTAACAACGATTTCTTGGGGGATTTTGGAGCAAGAGACCCTTTCCCAGCTGAGTTGGAAAGTCAGTTTGGAGAGAAAGTTATAGGTAGTTATAACACTGAACACAAAATCCTTATCCCAAATATCTCTGCTCTTTCTCTTTCTCAACAGGAGTGTACCCCCATTTCACCTTTACAGTCCCCCCTTTCTCAAGATGATGCTAACCAGCTTATAAGAAAGGTAACATACTTTCTCTCTAAGCAACTATATACATGGACAAAGCACATGACACTGATACGTAGACACTTGTAATAATTTGAAAAATGGACGGTAATTGAATGTAACAACATGTGTCAGCGACACGAGCCATACACTAGATATATCTTTGATATGTCGATGCTACATAAGTTGCTAATATGTGACTAAGTTTTGATTAATTTATAGTTTGAGGATTTTCAACTGAAGTATAAAGCATATTCATAGGTTTACAAGTATTTATAAAAAAAAAAGAATGAGTGAACTTAGACGATGAAGACAATTATGATGGAGAAACTAATGTCAATTTATATCAGCAATAGTTGTGTAGTTTATATTGGAATTTTTTAGTTTTCATATAAAAAATAGCTTATAATTCTTCAAAGGTTTTCATAATTTTTTTAGTTTGTCACTAATATTTTGTGACAAAGTGGATCATTATATATTTTTTCTTGGAAACTTATGAAGTTATAACAACAGATTATCACTTTATTACTTATCGACACTATACCGGACAAAATATGTTTCAATCAGAAGGATTATTAGTAGTGTATAATCATCATAAATGAATTATTGATATTAGTTTTAAGTCTCTGCCCATGGTAATCAGTGATGCTCAACTGTTGAATTTACTTGTGGTTGTTCACATTTTAGCTTGTGAATATGTACATTGTTTACGGATCTTTCATATATGAAAGCCTTAATTTCAGCTTAATTTTTTCAGAAGAGAAATGATATTTGTACAACCACTTTGTAACAACTTTTAGACAACTTTCTCTTATACTCACATTATACTCTTACTCTCTCTCTTCCTTTTTCTCTCTCCATTGTTTTTGACCAATGAAAAGAGAGAAAAGGAAGGTTGTCAAATAGGTTGTACTAAATGGTTGTTCAAATATCATTGCTCTTTTCAGAAATACAGAAAATATTGAACTCAACAGATGCAGTACTTTACTCTGGTACTTGTCATATATATATTTTAGAATGTAGATGTGTGAATCAGGTTATGATTTACTCTGAGATTATGCTTCACATATATGATTAAATACTACTTGTTGGAAGACAATATATTAGGAGCTTAAAACCACCAAGGTTGATTGAGCTGGTAAGGATCGAAACAATTGGCATATAAGTTATAAGACTTAGGTCTCGGAAAGATTAGTAAGTGGTATAGTTTGAGATACCGGAGGAGGACTATGTAGGATATCTTGGGTTTGATATCTGTTACTAAAAATCCTCCCTCCCTGTTACAAATTAATCACTAACGGTTGTTTATAAAAAAAATGTCCCCTTTGTAAGTAATCTGTGACTACCCTTGTAAGCCCTTGCCAAATTAGTGCACTTGGAATGAAGTCACTTCCTTTCATCTTAAACTTTATTTCACCAAAGAGAAAATGGCAAATACCTCCTGAACATGACTTAATCCTTGTTCAAAATGTTACTAATTTGATTAAGAAAGTGCATGATGAGGATCAAACACTTGTCGCATGGTCAAAGAGATTTTAATGCCATGAAGATGTATATATCATGCTATAACATTCTTTAGAGTATATATACATCATACAGATTGCATGAGAAAAAGTGATTTGAAGTATGAATCAATAAGGGCTTCGAATTTATCTGCTGAACATAATATTTGAATGCTACTCAAAGTCTGGTGAATGTAATGTTTATGATCAAAGTGAATGAGCCAACCATTTTTATTATGCTCTACTCTTGAAAATTTTGTGCATATATTGAAGTTAAGGTGTGTGTTAATTTTCTGCCTCAGATGCACATTTGGTTATCAGTTTTTCGTTTTGTTTATTAACTCGAATAGATAGTGCTTTCGGGCTGTATACAGTAGTTGAACCTGTTTTTTTATTTGGAAAATAATGTGATACACTGAGTGTTTTGAAATATTTCTTTTTGTTACTATTAGCATTTTCGGATAAAGTCTGTGACTCTGTTTGATGAATGGGCACTTTATACGTTAACCCGTTTTGACATAAGATTTAGATTAGACACCTCAAGTTTTATGAATTTGGGTTTATTTAATTGTTTTATAATTAAGATTTGTCATATATGCTTGTAATAGTGTCTTTCCTATTATTTTTAATACCCCCCTCCTGGTTTTGCTGGAAAAGGCCCCAGTTGCTAATACTTAATGAGCATGTTTTTTTAACTAAATTTGTTGTTTGTAATTTGACTTGATAGTCAGATCTGATTCACATTTAAAACAAGCTACAACCATAAGAAGCTATTTATAACACATTTTTACCCTGCAAATTTCATAGAAGTCCATTTTACACTGTCTAGCTTCTTAAACTTTTTTCTTTTCATTTATGTAGGTTTTGGGTTGGAGACTTGTGAATGATGAAGGAGTACTTAAACTTCGATGCTTGTGGAAATTGAGAGATTTTAAACGCGGAGTTGAACTCATTAACAGAATCTCTACGGTTGTAGAGACTGCAGGACATTTCCCCAATATCCACATAGAACAACCAAATCAAGTCAGAGCAGAACTGTGGACAACATCCATTGGTAAGCCTTAAACCAGTACCCTTCTTATCTTCTCCCTCCTATCATTCTTAGTTATTAGTTTGTTTAGAGAAATTTTGTTTATTTATAATTTTAAAATTTCAATATTACATTAACCATGGTGAGATGGACATTGAAAAGGTAAAATTATATAATTGAAATTTTGTTGATTAAAAAAGCTTATTGATCATGTTTGCAAAACAACCTTAAAAGACACTTTTTTTATATGCAACCTTAAAAGACACTTGTATTACCAATTGTTGGTCCGAGTAGAACTACACTTAGATCCGTTGAGCAAAGTTTCAAGTTTTTGCCTTGTGGGTGGAAAAAACGTGGTTGAGACCACACTAAATGTGACCAGCTAAGTTTTTCGGCGGAGATTATAATTATTTGCAAGCCGGCATATAATTTGTACCAATAATATGTTTACAAAAAAAGAAAGAAGATATTTGTATAATCACAGACGGAGTACCTACTACATTTAATATCATCGAGTGATTTTAATTTTAGTTGCTATTGATTGCAAGTTCTCAGTATAGGGTTTAACACTATCATGGAACAACCCTTTATCATTCCTCTTTCCTCCTTCCCTAATGGAGATTATGTAGGCGCCAAACTCCGTGCAAACTCTGATTTCACTAAAAACGAGTTTACGAGTTGACACTATATTCTCACCCAAAAACTTAAACTCGACAGTTTATGAGTTAGCACTAGAGTTTGAGAACACTGGGCACCACTCTTGTGGCAGGGCCTCCTCATAGGCACGTCTAGGCTCCCGTTCCTAAAAACATGTTCTCATCTTGATTTTTAAAGCATGACATTTAAAAGGGTTCAATATTTTGCAGGTGGATTAAGTATGAATGATTTCATTGTAGCTGCAAAGATAGATGCAATACAGACATCAGATCTTGTCCCAAGGAAAAGAGCTTGGGCTTAA

Protein sequence

>MS.gene068224.t1

MATTKLVLLSFPVLQINPNTTKLNPSFNFQNRTPNGFSPLRSFNNDFLGDFGARDPFPAELESQFGEKVIGSYNTEHKILIPNISALSLSQQECTPISPLQSPLSQDDANQLIRKVLGWRLVNDEGVLKLRCLWKLRDFKRGVELINRISTVVETAGHFPNIHIEQPNQVRAELWTTSIGGLSMNDFIVAAKIDAIQTSDLVPRKRAWA