Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029290 | sp|Q8RYE9|GPPL3_ARATH | 67.857 | 224 | 69 | 2 | 19 | 240 | 23 | 245 | 9.86e-113 | 326 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008850 | Msa0029290 | 0.804565 | 2.032544e-49 | -8.615850e-47 |
| Msa0018870 | Msa0029290 | 0.806672 | 7.342292e-50 | -8.615850e-47 |
| Msa0029290 | Msa0030000 | 0.812149 | 4.903343e-51 | -8.615850e-47 |
| Msa0029290 | Msa0032040 | 0.804565 | 2.032593e-49 | -8.615850e-47 |
| Msa0029290 | Msa0040410 | 0.818894 | 1.544393e-52 | -8.615850e-47 |
| Msa0029290 | Msa0043240 | -0.804317 | 2.289643e-49 | -8.615850e-47 |
| Msa0029290 | Msa0051600 | 0.800220 | 1.596538e-48 | -8.615850e-47 |
| Msa0029290 | Msa0054760 | 0.806038 | 9.985238e-50 | -8.615850e-47 |
| Msa0029290 | Msa0055530 | 0.809661 | 1.694560e-50 | -8.615850e-47 |
| Msa0029290 | Msa0072710 | 0.809643 | 1.709611e-50 | -8.615850e-47 |
| Msa0029290 | Msa0092660 | 0.804080 | 2.564799e-49 | -8.615850e-47 |
| Msa0029290 | Msa0092730 | 0.800072 | 1.710597e-48 | -8.615850e-47 |
| Msa0029290 | Msa0114240 | 0.804148 | 2.482724e-49 | -8.615850e-47 |
| Msa0029290 | Msa0116950 | 0.833938 | 4.000227e-56 | -8.615850e-47 |
| Msa0029290 | Msa0121080 | 0.800660 | 1.298467e-48 | -8.615850e-47 |
| Msa0029290 | Msa0125230 | 0.801834 | 7.467590e-49 | -8.615850e-47 |
| Msa0029290 | Msa0126760 | 0.801532 | 8.613277e-49 | -8.615850e-47 |
| Msa0029290 | Msa0130800 | 0.802835 | 4.645288e-49 | -8.615850e-47 |
| Msa0029290 | Msa0132920 | 0.800828 | 1.200043e-48 | -8.615850e-47 |
| Msa0029290 | Msa0155540 | 0.809574 | 1.769433e-50 | -8.615850e-47 |
| Msa0029290 | Msa0160470 | 0.822811 | 1.940333e-53 | -8.615850e-47 |
| Msa0029290 | Msa0164630 | 0.819188 | 1.324167e-52 | -8.615850e-47 |
| Msa0029290 | Msa0175530 | 0.818246 | 2.166236e-52 | -8.615850e-47 |
| Msa0029290 | Msa0181410 | 0.818251 | 2.160556e-52 | -8.615850e-47 |
| Msa0029290 | Msa0218860 | 0.806440 | 8.216837e-50 | -8.615850e-47 |
| Msa0029290 | Msa0267120 | 0.813937 | 1.987491e-51 | -8.615850e-47 |
| Msa0029290 | Msa0280140 | 0.802488 | 5.478723e-49 | -8.615850e-47 |
| Msa0029290 | Msa0282860 | 0.823527 | 1.320465e-53 | -8.615850e-47 |
| Msa0029290 | Msa0285740 | 0.803464 | 3.443233e-49 | -8.615850e-47 |
| Msa0029290 | Msa0292150 | 0.814327 | 1.630301e-51 | -8.615850e-47 |
| Msa0029290 | Msa0314980 | 0.800944 | 1.136129e-48 | -8.615850e-47 |
| Msa0029290 | Msa0333900 | 0.812645 | 3.820581e-51 | -8.615850e-47 |
| Msa0029290 | Msa0334020 | 0.806205 | 9.210797e-50 | -8.615850e-47 |
| Msa0029290 | Msa0336270 | 0.822274 | 2.585844e-53 | -8.615850e-47 |
| Msa0029290 | Msa0376900 | 0.825394 | 4.802036e-54 | -8.615850e-47 |
| Msa0029290 | Msa0380310 | 0.814030 | 1.896243e-51 | -8.615850e-47 |
| Msa0029290 | Msa0380360 | 0.812378 | 4.368396e-51 | -8.615850e-47 |
| Msa0029290 | Msa0383570 | 0.808589 | 2.875889e-50 | -8.615850e-47 |
| Msa0029290 | Msa0386390 | 0.821700 | 3.511302e-53 | -8.615850e-47 |
| Msa0029290 | Msa0387790 | 0.813149 | 2.961852e-51 | -8.615850e-47 |
| Msa0029290 | Msa0396970 | 0.834666 | 2.627518e-56 | -8.615850e-47 |
| Msa0029290 | Msa0397000 | 0.831995 | 1.216968e-55 | -8.615850e-47 |
| Msa0029290 | Msa0413740 | 0.810791 | 9.670676e-51 | -8.615850e-47 |
| Msa0029290 | Msa0423600 | 0.814587 | 1.427883e-51 | -8.615850e-47 |
| Msa0029290 | Msa0458790 | 0.820887 | 5.408908e-53 | -8.615850e-47 |
| Msa0029290 | Msa0463540 | 0.822065 | 2.891284e-53 | -8.615850e-47 |
| Msa0029290 | Msa0471890 | 0.821269 | 4.416898e-53 | -8.615850e-47 |
| Msa0029290 | Msa0475740 | 0.813972 | 1.952599e-51 | -8.615850e-47 |
| Msa0029290 | Msa0479790 | 0.821285 | 4.379939e-53 | -8.615850e-47 |
| Msa0029290 | Msa0482020 | 0.804792 | 1.821992e-49 | -8.615850e-47 |
| Msa0029290 | Msa0492000 | 0.813617 | 2.338244e-51 | -8.615850e-47 |
| Msa0029290 | Msa0500490 | 0.801990 | 6.935386e-49 | -8.615850e-47 |
| Msa0029290 | Msa0505390 | 0.814269 | 1.678822e-51 | -8.615850e-47 |
| Msa0029290 | Msa0512310 | 0.805467 | 1.316593e-49 | -8.615850e-47 |
| Msa0029290 | Msa0514260 | 0.807179 | 5.734479e-50 | -8.615850e-47 |
| Msa0029290 | Msa0524050 | 0.801652 | 8.140175e-49 | -8.615850e-47 |
| Msa0029290 | Msa0524120 | 0.800017 | 1.755543e-48 | -8.615850e-47 |
| Msa0029290 | Msa0528170 | 0.800080 | 1.704348e-48 | -8.615850e-47 |
| Msa0029290 | Msa0534380 | 0.812724 | 3.671661e-51 | -8.615850e-47 |
| Msa0029290 | Msa0540520 | 0.812146 | 4.908895e-51 | -8.615850e-47 |
| Msa0029290 | Msa0576420 | 0.811430 | 7.028412e-51 | -8.615850e-47 |
| Msa0029290 | Msa0581190 | 0.807701 | 4.445226e-50 | -8.615850e-47 |
| Msa0029290 | Msa0589600 | 0.807047 | 6.117550e-50 | -8.615850e-47 |
| Msa0029290 | Msa0604700 | 0.807736 | 4.369296e-50 | -8.615850e-47 |
| Msa0029290 | Msa0606140 | 0.811916 | 5.510306e-51 | -8.615850e-47 |
| Msa0029290 | Msa0607300 | 0.819454 | 1.151471e-52 | -8.615850e-47 |
| Msa0029290 | Msa0618260 | 0.820968 | 5.182710e-53 | -8.615850e-47 |
| Msa0029290 | Msa0619330 | 0.815743 | 7.907259e-52 | -8.615850e-47 |
| Msa0029290 | Msa0633720 | 0.817551 | 3.109655e-52 | -8.615850e-47 |
| Msa0029290 | Msa0657820 | 0.808509 | 2.991268e-50 | -8.615850e-47 |
| Msa0029290 | Msa0685540 | 0.800367 | 1.489995e-48 | -8.615850e-47 |
| Msa0029290 | Msa0688760 | 0.802268 | 6.081126e-49 | -8.615850e-47 |
| Msa0029290 | Msa0690350 | 0.808942 | 2.416624e-50 | -8.615850e-47 |
| Msa0029290 | Msa0704990 | 0.810782 | 9.713581e-51 | -8.615850e-47 |
| Msa0029290 | Msa0730180 | 0.805453 | 1.325338e-49 | -8.615850e-47 |
| Msa0029290 | Msa0750940 | 0.809124 | 2.209450e-50 | -8.615850e-47 |
| Msa0029290 | Msa0804340 | 0.802709 | 4.932714e-49 | -8.615850e-47 |
| Msa0029290 | Msa0829430 | 0.811866 | 5.650790e-51 | -8.615850e-47 |
| Msa0029290 | Msa0830120 | 0.808768 | 2.633661e-50 | -8.615850e-47 |
| Msa0029290 | Msa0830450 | 0.807781 | 4.273326e-50 | -8.615850e-47 |
| Msa0029290 | Msa0842270 | 0.812644 | 3.821672e-51 | -8.615850e-47 |
| Msa0029290 | Msa0906720 | 0.812583 | 3.941622e-51 | -8.615850e-47 |
| Msa0029290 | Msa0925160 | 0.803377 | 3.588493e-49 | -8.615850e-47 |
| Msa0029290 | Msa0955260 | 0.821184 | 4.621839e-53 | -8.615850e-47 |
| Msa0029290 | Msa0975180 | 0.807361 | 5.247365e-50 | -8.615850e-47 |
| Msa0029290 | Msa0975910 | 0.812860 | 3.427220e-51 | -8.615850e-47 |
| Msa0029290 | Msa1028460 | 0.811930 | 5.471674e-51 | -8.615850e-47 |
| Msa0029290 | Msa1029320 | 0.820202 | 7.770828e-53 | -8.615850e-47 |
| Msa0029290 | Msa1029430 | 0.817447 | 3.282524e-52 | -8.615850e-47 |
| Msa0029290 | Msa1037060 | -0.813387 | 2.626107e-51 | -8.615850e-47 |
| Msa0029290 | Msa1038320 | 0.811657 | 6.274753e-51 | -8.615850e-47 |
| Msa0029290 | Msa1055360 | 0.804438 | 2.160027e-49 | -8.615850e-47 |
| Msa0029290 | Msa1064210 | 0.805757 | 1.143928e-49 | -8.615850e-47 |
| Msa0029290 | Msa1067710 | 0.811676 | 6.215784e-51 | -8.615850e-47 |
| Msa0029290 | Msa1073140 | 0.807527 | 4.839474e-50 | -8.615850e-47 |
| Msa0029290 | Msa1080690 | 0.800767 | 1.234850e-48 | -8.615850e-47 |
| Msa0029290 | Msa1081850 | 0.824560 | 7.554302e-54 | -8.615850e-47 |
| Msa0029290 | Msa1093390 | 0.802745 | 4.848665e-49 | -8.615850e-47 |
| Msa0029290 | Msa1126910 | 0.841637 | 4.211925e-58 | -8.615850e-47 |
| Msa0029290 | Msa1130070 | 0.802370 | 5.793965e-49 | -8.615850e-47 |
| Msa0029290 | Msa1137800 | 0.813531 | 2.441610e-51 | -8.615850e-47 |
| Msa0029290 | Msa1140010 | 0.823786 | 1.148204e-53 | -8.615850e-47 |
| Msa0029290 | Msa1151120 | 0.811945 | 5.431594e-51 | -8.615850e-47 |
| Msa0029290 | Msa1164800 | -0.808420 | 3.124603e-50 | -8.615850e-47 |
| Msa0029290 | Msa1166280 | 0.802770 | 4.791643e-49 | -8.615850e-47 |
| Msa0029290 | Msa1178970 | 0.836686 | 8.091771e-57 | -8.615850e-47 |
| Msa0029290 | Msa1183730 | 0.800793 | 1.220102e-48 | -8.615850e-47 |
| Msa0029290 | Msa1192150 | 0.814764 | 1.304573e-51 | -8.615850e-47 |
| Msa0029290 | Msa1214900 | 0.812824 | 3.490670e-51 | -8.615850e-47 |
| Msa0029290 | Msa1222030 | -0.806931 | 6.471487e-50 | -8.615850e-47 |
| Msa0029290 | Msa1226600 | 0.803747 | 3.007186e-49 | -8.615850e-47 |
| Msa0029290 | Msa1233770 | 0.819740 | 9.909074e-53 | -8.615850e-47 |
| Msa0029290 | Msa1262310 | 0.815819 | 7.602454e-52 | -8.615850e-47 |
| Msa0029290 | Msa1276080 | 0.830387 | 3.022802e-55 | -8.615850e-47 |
| Msa0029290 | Msa1280020 | 0.800761 | 1.238252e-48 | -8.615850e-47 |
| Msa0029290 | Msa1291140 | 0.820579 | 6.367616e-53 | -8.615850e-47 |
| Msa0029290 | Msa1298740 | 0.815144 | 1.074653e-51 | -8.615850e-47 |
| Msa0029290 | Msa1326400 | 0.802507 | 5.429366e-49 | -8.615850e-47 |
| Msa0029290 | Msa1336080 | 0.830282 | 3.206802e-55 | -8.615850e-47 |
| Msa0029290 | Msa1341790 | 0.827958 | 1.173416e-54 | -8.615850e-47 |
| Msa0029290 | Msa1344940 | 0.804584 | 2.014204e-49 | -8.615850e-47 |
| Msa0029290 | Msa1349360 | 0.800801 | 1.215248e-48 | -8.615850e-47 |
| Msa0029290 | Msa1356200 | 0.810007 | 1.427754e-50 | -8.615850e-47 |
| Msa0029290 | Msa1359620 | 0.817039 | 4.055191e-52 | -8.615850e-47 |
| Msa0029290 | Msa1361090 | 0.819635 | 1.047212e-52 | -8.615850e-47 |
| Msa0029290 | Msa1369900 | 0.805896 | 1.069579e-49 | -8.615850e-47 |
| Msa0029290 | Msa1395640 | 0.811686 | 6.184497e-51 | -8.615850e-47 |
| Msa0029290 | Msa1397110 | 0.822299 | 2.551268e-53 | -8.615850e-47 |
| Msa0029290 | Msa1400700 | -0.808614 | 2.840486e-50 | -8.615850e-47 |
| Msa0029290 | Msa1403700 | 0.813845 | 2.082838e-51 | -8.615850e-47 |
| Msa0029290 | Msa1403900 | 0.818439 | 1.959139e-52 | -8.615850e-47 |
| Msa0029290 | Msa1408190 | 0.815261 | 1.011935e-51 | -8.615850e-47 |
| Msa0029290 | Msa1410170 | 0.806837 | 6.776028e-50 | -8.615850e-47 |
| Msa0029290 | Msa1426870 | 0.816223 | 6.177591e-52 | -8.615850e-47 |
| Msa0029290 | Msa1428420 | 0.815932 | 7.176449e-52 | -8.615850e-47 |
| Msa0029290 | Msa1428990 | 0.826188 | 3.110766e-54 | -8.615850e-47 |
| Msa0029290 | Msa1432350 | 0.800607 | 1.331562e-48 | -8.615850e-47 |
| Msa0029290 | Msa1435470 | 0.800847 | 1.189432e-48 | -8.615850e-47 |
| Msa0029290 | Msa1448990 | 0.814181 | 1.756021e-51 | -8.615850e-47 |
| Msa0029290 | Msa1450420 | 0.805565 | 1.255296e-49 | -8.615850e-47 |
| Msa0029290 | Msa1451780 | 0.821068 | 4.913723e-53 | -8.615850e-47 |
| Msa0029290 | Msa1458920 | 0.814810 | 1.274188e-51 | -8.615850e-47 |
| Msa0029290 | Msa1464560 | 0.821254 | 4.452174e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029290 | MtrunA17_Chr1g0186031 | 95.000 | 240 | 11 | 1 | 1 | 240 | 1 | 239 | 2.08e-172 | 474 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029290 | AT2G33255.1 | 67.857 | 224 | 69 | 2 | 19 | 240 | 23 | 245 | 1.00e-113 | 326 |
Find 83 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAGCTTTATTGACTTCTT+AGG | 0.133455 | 1_1:+54586316 | Msa0029290:three_prime_UTR |
| AACCACTTACATCATCTTTA+AGG | 0.144402 | 1_1:-54585411 | None:intergenic |
| AAATGCTGATGTCAGATTTC+TGG | 0.175133 | 1_1:-54583646 | None:intergenic |
| TTACCTATTACTAGTTTCTT+TGG | 0.219683 | 1_1:+54586401 | Msa0029290:three_prime_UTR |
| ATTTATTCCACCAACGCTTT+GGG | 0.274021 | 1_1:+54584171 | Msa0029290:CDS |
| GAAATCGACATTAGCATATT+CGG | 0.286039 | 1_1:-54586023 | None:intergenic |
| TTCTTGATTCAAAGAAAATT+AGG | 0.286367 | 1_1:+54584111 | Msa0029290:CDS |
| TACTGCATATCTGTTCTCTT+TGG | 0.304882 | 1_1:+54585350 | Msa0029290:CDS |
| ATTTACTACCAGGCATGATT+TGG | 0.318202 | 1_1:-54583999 | None:intergenic |
| GATTTATTCCACCAACGCTT+TGG | 0.319915 | 1_1:+54584170 | Msa0029290:CDS |
| ATCATAAACCACAAAATAAA+TGG | 0.325555 | 1_1:-54586143 | None:intergenic |
| TGATGTCAGATTTCTGGTTT+TGG | 0.332123 | 1_1:-54583640 | None:intergenic |
| GACGCCACGGAGGCGCGTTT+TGG | 0.336627 | 1_1:-54583764 | None:intergenic |
| AATCCAAAGAAACTAGTAAT+AGG | 0.348757 | 1_1:-54586404 | None:intergenic |
| ACTGCATATCTGTTCTCTTT+GGG | 0.358743 | 1_1:+54585351 | Msa0029290:CDS |
| AATAATGTTGTATCATATCT+TGG | 0.360992 | 1_1:+54586284 | Msa0029290:three_prime_UTR |
| AAAATGAGCAATGGTATCAT+AGG | 0.361847 | 1_1:-54583953 | None:intergenic |
| CCGACCATTACTACTTCATT+TGG | 0.368014 | 1_1:-54585382 | None:intergenic |
| AGGGAAGTTACCTTGAAATC+TGG | 0.368119 | 1_1:-54586049 | None:intergenic |
| AAATCGACATTAGCATATTC+GGG | 0.370379 | 1_1:-54586022 | None:intergenic |
| TAAGCTTTATTGACTTCTTA+GGG | 0.375413 | 1_1:+54586317 | Msa0029290:three_prime_UTR |
| TTAGCATCATCGTATGTGTT+TGG | 0.378782 | 1_1:+54586519 | Msa0029290:three_prime_UTR |
| GGAGCTGGATCAGGTTTATA+AGG | 0.385703 | 1_1:-54585325 | None:intergenic |
| TGGTTTATGATATAAGAATC+TGG | 0.392922 | 1_1:+54586155 | Msa0029290:three_prime_UTR |
| CGATTTCAAACCAGATTTCA+AGG | 0.418712 | 1_1:+54586039 | Msa0029290:CDS |
| ACTTGTCTGCTTGATCAAAC+TGG | 0.423784 | 1_1:+54585986 | Msa0029290:CDS |
| TTTATTCCTCACCTCATGTA+AGG | 0.429471 | 1_1:+54586207 | Msa0029290:three_prime_UTR |
| TACTAGTTTCTTTGGATTCG+CGG | 0.435189 | 1_1:+54586409 | Msa0029290:three_prime_UTR |
| ATTGCTTGTGGAGGGCGAGC+AGG | 0.444789 | 1_1:+54585956 | Msa0029290:CDS |
| CAAATGAAGTAGTAATGGTC+GGG | 0.454036 | 1_1:+54585383 | Msa0029290:CDS |
| TGCAGTAGTGGAGCTGGATC+AGG | 0.459438 | 1_1:-54585334 | None:intergenic |
| TGCTAATAACTGATCAGCCT+TGG | 0.470390 | 1_1:-54586502 | None:intergenic |
| GAGGAGGTGACATCTACATT+TGG | 0.473312 | 1_1:+54586177 | Msa0029290:three_prime_UTR |
| ATCAATTCCAGCAGGGTTTG+AGG | 0.476612 | 1_1:-54583884 | None:intergenic |
| TTCAAGATATCAATTCCAGC+AGG | 0.481890 | 1_1:-54583892 | None:intergenic |
| TTAGGAGGGGTTTAATTACA+AGG | 0.482591 | 1_1:+54584129 | Msa0029290:CDS |
| AACTGACCCCAAAGCGTTGG+TGG | 0.483746 | 1_1:-54584178 | None:intergenic |
| CGCGCAATATCGTGTCAAAC+GGG | 0.489752 | 1_1:-54586468 | None:intergenic |
| CAGATATGCAGTAGTGGAGC+TGG | 0.491301 | 1_1:-54585340 | None:intergenic |
| CGAAATTCCCTGCTTAATGC+TGG | 0.499413 | 1_1:-54585301 | None:intergenic |
| TACTACCAGGCATGATTTGG+AGG | 0.499592 | 1_1:-54583996 | None:intergenic |
| ACGCGCAATATCGTGTCAAA+CGG | 0.505203 | 1_1:-54586469 | None:intergenic |
| ACTAGTTTCTTTGGATTCGC+GGG | 0.509737 | 1_1:+54586410 | Msa0029290:three_prime_UTR |
| GCGAACAAAACTTGAGATCA+TGG | 0.518487 | 1_1:-54586115 | None:intergenic |
| GTCAAAGCCTCAAACCCTGC+TGG | 0.521374 | 1_1:+54583877 | Msa0029290:CDS |
| GCCGAGTACTGCTTTGTGCA+TGG | 0.526834 | 1_1:-54583836 | None:intergenic |
| AGTACTGCTTTGTGCATGGA+AGG | 0.533567 | 1_1:-54583832 | None:intergenic |
| ACATGGTGCGTGGGAAGAGA+AGG | 0.533604 | 1_1:-54583726 | None:intergenic |
| GAGCAATGGTATCATAGGCT+TGG | 0.543525 | 1_1:-54583948 | None:intergenic |
| TTGATTCAAAGAAAATTAGG+AGG | 0.544314 | 1_1:+54584114 | Msa0029290:CDS |
| TCTTGAAACTCATTGATCAC+TGG | 0.545427 | 1_1:+54583908 | Msa0029290:CDS |
| GAATGAATGTCACAAAATAG+TGG | 0.551438 | 1_1:+54586339 | Msa0029290:three_prime_UTR |
| TCAACCAAATGAAGTAGTAA+TGG | 0.553506 | 1_1:+54585378 | Msa0029290:CDS |
| ATGGAAGGGAAATCAATGAC+GGG | 0.555721 | 1_1:-54583817 | None:intergenic |
| GATCACCTCCAAATCATGCC+TGG | 0.556305 | 1_1:+54583991 | Msa0029290:CDS |
| AGGGAAATCAATGACGGGGA+CGG | 0.561282 | 1_1:-54583812 | None:intergenic |
| TCCATGCACAAAGCAGTACT+CGG | 0.569767 | 1_1:+54583835 | Msa0029290:CDS |
| CCAAATGAAGTAGTAATGGT+CGG | 0.579295 | 1_1:+54585382 | Msa0029290:CDS |
| TAGGCTTGGCGTTGTTGATG+TGG | 0.585097 | 1_1:-54583934 | None:intergenic |
| AGAGAACAGATATGCAGTAG+TGG | 0.586307 | 1_1:-54585346 | None:intergenic |
| GGTGGTTAAGTGTGATGACA+TGG | 0.587907 | 1_1:-54583743 | None:intergenic |
| TGATTCAAAGAAAATTAGGA+GGG | 0.590623 | 1_1:+54584115 | Msa0029290:CDS |
| ATGATATAAGAATCTGGAGG+AGG | 0.593886 | 1_1:+54586161 | Msa0029290:three_prime_UTR |
| TCATGACCTTACATGAGGTG+AGG | 0.596319 | 1_1:-54586213 | None:intergenic |
| CATGGAAGGGAAATCAATGA+CGG | 0.604416 | 1_1:-54583818 | None:intergenic |
| AAATGAAGTAGTAATGGTCG+GGG | 0.605638 | 1_1:+54585384 | Msa0029290:CDS |
| AATTGAGTAAACTTCAGAGA+GGG | 0.606847 | 1_1:-54586068 | None:intergenic |
| TGCGCGTGTTAAGATTTCCA+AGG | 0.606876 | 1_1:+54586485 | Msa0029290:three_prime_UTR |
| TCAAGATATCAATTCCAGCA+GGG | 0.613019 | 1_1:-54583891 | None:intergenic |
| GATTCAAAGAAAATTAGGAG+GGG | 0.613293 | 1_1:+54584116 | Msa0029290:CDS |
| TTTATTCCACCAACGCTTTG+GGG | 0.616024 | 1_1:+54584172 | Msa0029290:CDS |
| TAAAACTGACCCCAAAGCGT+TGG | 0.618013 | 1_1:-54584181 | None:intergenic |
| GAGGTGACATCTACATTTGG+AGG | 0.622873 | 1_1:+54586180 | Msa0029290:three_prime_UTR |
| GTCTGCTTGATCAAACTGGA+AGG | 0.626822 | 1_1:+54585990 | Msa0029290:CDS |
| GTACTGCTTTGTGCATGGAA+GGG | 0.627516 | 1_1:-54583831 | None:intergenic |
| AAGTGTGATGACATGGTGCG+TGG | 0.628658 | 1_1:-54583736 | None:intergenic |
| ACCACCAAAACGCGCCTCCG+TGG | 0.633706 | 1_1:+54583760 | Msa0029290:CDS |
| CCATGTCGAAAACGACGCCA+CGG | 0.669079 | 1_1:-54583777 | None:intergenic |
| AGTGTGATGACATGGTGCGT+GGG | 0.699733 | 1_1:-54583735 | None:intergenic |
| TGGAAGGGAAATCAATGACG+GGG | 0.710060 | 1_1:-54583816 | None:intergenic |
| TGTCGAAAACGACGCCACGG+AGG | 0.727352 | 1_1:-54583774 | None:intergenic |
| GAATTGAGTAAACTTCAGAG+AGG | 0.733429 | 1_1:-54586069 | None:intergenic |
| TTTATGATATAAGAATCTGG+AGG | 0.768254 | 1_1:+54586158 | Msa0029290:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTACTTTTTTATTATATT+AGG | + | chr1_1:54584041-54584060 | Msa0029290:intron | 10.0% |
| !!! | TGATTTTTTCAAATTATTAG+CGG | + | chr1_1:54584364-54584383 | Msa0029290:intron | 15.0% |
| !! | ATTGAATATGAACAAATAAA+AGG | - | chr1_1:54585168-54585187 | None:intergenic | 15.0% |
| !!! | TTTTATTTGTTCATATTCAA+TGG | + | chr1_1:54585167-54585186 | Msa0029290:intron | 15.0% |
| !!! | TAGTAAAGTAGATTTTGAAT+GGG | - | chr1_1:54583676-54583695 | None:intergenic | 20.0% |
| !! | TTCTTGATTCAAAGAAAATT+AGG | + | chr1_1:54584111-54584130 | Msa0029290:CDS | 20.0% |
| !! | TCAATTTACATTACACAATT+GGG | + | chr1_1:54584256-54584275 | Msa0029290:intron | 20.0% |
| !!! | AGGGAGTTTTTTTTTTTTTT+TGG | - | chr1_1:54584607-54584626 | None:intergenic | 20.0% |
| !! | GAGCATGTTTATAAAAAAAA+GGG | - | chr1_1:54584626-54584645 | None:intergenic | 20.0% |
| !! | AGAGCATGTTTATAAAAAAA+AGG | - | chr1_1:54584627-54584646 | None:intergenic | 20.0% |
| !! | TTTCTCAAAGATTAACAAAA+TGG | - | chr1_1:54584737-54584756 | None:intergenic | 20.0% |
| !!! | GATTTTATTCTATCTTGTTA+TGG | - | chr1_1:54584888-54584907 | None:intergenic | 20.0% |
| !!! | TTGTTTGAATTGACTTATTT+AGG | - | chr1_1:54585059-54585078 | None:intergenic | 20.0% |
| !! | AATATGAACAAATAAAAGGA+GGG | - | chr1_1:54585164-54585183 | None:intergenic | 20.0% |
| !! | GAACATTCAATCAAATTAAT+GGG | - | chr1_1:54585442-54585461 | None:intergenic | 20.0% |
| !! | TGAACATTCAATCAAATTAA+TGG | - | chr1_1:54585443-54585462 | None:intergenic | 20.0% |
| !! | TTGAATGTTCATGATTTATA+TGG | + | chr1_1:54585452-54585471 | Msa0029290:intron | 20.0% |
| !! | ATCATAAACCACAAAATAAA+TGG | - | chr1_1:54586146-54586165 | None:intergenic | 20.0% |
| !! | AATAATGTTGTATCATATCT+TGG | + | chr1_1:54586284-54586303 | Msa0029290:three_prime_UTR | 20.0% |
| !!! | TTTTGTAACTTCAATTTATC+AGG | + | chr1_1:54586445-54586464 | Msa0029290:three_prime_UTR | 20.0% |
| !! | CTAGTAAAGTAGATTTTGAA+TGG | - | chr1_1:54583677-54583696 | None:intergenic | 25.0% |
| ! | TACAAAAGAAGAAGAAAAGT+AGG | - | chr1_1:54584026-54584045 | None:intergenic | 25.0% |
| ! | TGATTAATTAATTATGCTGC+AGG | + | chr1_1:54584068-54584087 | Msa0029290:intron | 25.0% |
| ! | TTGATTCAAAGAAAATTAGG+AGG | + | chr1_1:54584114-54584133 | Msa0029290:CDS | 25.0% |
| ! | TGATTCAAAGAAAATTAGGA+GGG | + | chr1_1:54584115-54584134 | Msa0029290:CDS | 25.0% |
| ! | CTCAATTTACATTACACAAT+TGG | + | chr1_1:54584255-54584274 | Msa0029290:intron | 25.0% |
| ! | TTCATTGTAATTATGTGTGT+CGG | - | chr1_1:54584339-54584358 | None:intergenic | 25.0% |
| ! | TGTTATCAAGTTACTACTAT+TGG | + | chr1_1:54584659-54584678 | Msa0029290:intron | 25.0% |
| ! | GGAGTTAAATCTATAAAGTT+TGG | + | chr1_1:54584699-54584718 | Msa0029290:intron | 25.0% |
| ! | GAGAAAACAAAATCAGTAAA+AGG | + | chr1_1:54584751-54584770 | Msa0029290:intron | 25.0% |
| !! | GACAACTGAGTAATTTTATA+TGG | + | chr1_1:54584795-54584814 | Msa0029290:intron | 25.0% |
| !!! | AGATGTTCATAAGTTGTTTT+CGG | - | chr1_1:54584976-54584995 | None:intergenic | 25.0% |
| ! | AATTCAAACAAACCCTTAAA+AGG | + | chr1_1:54585068-54585087 | Msa0029290:intron | 25.0% |
| ! | GCATAATAAATTGAACTAAC+AGG | + | chr1_1:54585123-54585142 | Msa0029290:intron | 25.0% |
| ! | ATATGAACAAATAAAAGGAG+GGG | - | chr1_1:54585163-54585182 | None:intergenic | 25.0% |
| ! | GAATATGAACAAATAAAAGG+AGG | - | chr1_1:54585165-54585184 | None:intergenic | 25.0% |
| ! | AGAAACAATTGTAAAATCGA+AGG | + | chr1_1:54585517-54585536 | Msa0029290:intron | 25.0% |
| ! | ATTGAAACGGTTAAAGTTAT+GGG | - | chr1_1:54585720-54585739 | None:intergenic | 25.0% |
| ! | AATTGAAACGGTTAAAGTTA+TGG | - | chr1_1:54585721-54585740 | None:intergenic | 25.0% |
| ! | TAAGTGGCATAAAATTGAAA+CGG | - | chr1_1:54585733-54585752 | None:intergenic | 25.0% |
| !!! | TTTTATGCCACTTATAATAC+CGG | + | chr1_1:54585739-54585758 | Msa0029290:intron | 25.0% |
| ! | TCTTCACAATCATAAATAAG+TGG | + | chr1_1:54585789-54585808 | Msa0029290:intron | 25.0% |
| ! | TGAATCAACAAATATTTCGT+TGG | - | chr1_1:54585877-54585896 | None:intergenic | 25.0% |
| !!! | TTTGTTGATTCAGATGTATT+TGG | + | chr1_1:54585885-54585904 | Msa0029290:intron | 25.0% |
| !! | TCTTGAGACAAATTTTGAAT+TGG | + | chr1_1:54586090-54586109 | Msa0029290:CDS | 25.0% |
| ! | TGGTTTATGATATAAGAATC+TGG | + | chr1_1:54586155-54586174 | Msa0029290:three_prime_UTR | 25.0% |
| ! | TTTATGATATAAGAATCTGG+AGG | + | chr1_1:54586158-54586177 | Msa0029290:three_prime_UTR | 25.0% |
| !!! | AAAAAGTCCTTGACATTTTT+TGG | + | chr1_1:54586240-54586259 | Msa0029290:three_prime_UTR | 25.0% |
| !!! | TAAGCTTTATTGACTTCTTA+GGG | + | chr1_1:54586317-54586336 | Msa0029290:three_prime_UTR | 25.0% |
| !! | TTACCTATTACTAGTTTCTT+TGG | + | chr1_1:54586401-54586420 | Msa0029290:three_prime_UTR | 25.0% |
| ! | AATCCAAAGAAACTAGTAAT+AGG | - | chr1_1:54586407-54586426 | None:intergenic | 25.0% |
| ! | CGTATATGTAGTTTTTGTGT+GGG | - | chr1_1:54583590-54583609 | None:intergenic | 30.0% |
| CCACACAAAAACTACATATA+CGG | + | chr1_1:54583588-54583607 | Msa0029290:five_prime_UTR | 30.0% | |
| AAAATGAGCAATGGTATCAT+AGG | - | chr1_1:54583956-54583975 | None:intergenic | 30.0% | |
| !! | CTGTTTTTCAAAATGAGCAA+TGG | - | chr1_1:54583965-54583984 | None:intergenic | 30.0% |
| !! | CATTGCTCATTTTGAAAAAC+AGG | + | chr1_1:54583963-54583982 | Msa0029290:CDS | 30.0% |
| AAAAGTAGGTATTTACTACC+AGG | - | chr1_1:54584012-54584031 | None:intergenic | 30.0% | |
| GATTCAAAGAAAATTAGGAG+GGG | + | chr1_1:54584116-54584135 | Msa0029290:CDS | 30.0% | |
| TTTACATTACACAATTGGGT+TGG | + | chr1_1:54584260-54584279 | Msa0029290:intron | 30.0% | |
| TTTCAAATTATTAGCGGTGT+CGG | + | chr1_1:54584370-54584389 | Msa0029290:intron | 30.0% | |
| AAGCCAATGTTGTTAAATAG+CGG | - | chr1_1:54584513-54584532 | None:intergenic | 30.0% | |
| CATTATTGTCATGTCAACAA+AGG | + | chr1_1:54584565-54584584 | Msa0029290:intron | 30.0% | |
| ATTGGCTGTAGTTTCAATAT+TGG | + | chr1_1:54584677-54584696 | Msa0029290:intron | 30.0% | |
| TTGGCTGTAGTTTCAATATT+GGG | + | chr1_1:54584678-54584697 | Msa0029290:intron | 30.0% | |
| ATACTGTTTGAGAAAGCTTA+TGG | - | chr1_1:54585011-54585030 | None:intergenic | 30.0% | |
| ! | AAAGCAGATGAACCTTTTAA+GGG | - | chr1_1:54585083-54585102 | None:intergenic | 30.0% |
| ! | AAAAGCAGATGAACCTTTTA+AGG | - | chr1_1:54585084-54585103 | None:intergenic | 30.0% |
| !!! | GCTTTTTTACCCAATTCTAT+TGG | + | chr1_1:54585098-54585117 | Msa0029290:intron | 30.0% |
| ! | TTTTTACCCAATTCTATTGG+AGG | + | chr1_1:54585101-54585120 | Msa0029290:intron | 30.0% |
| ATTATGCCTCCAATAGAATT+GGG | - | chr1_1:54585110-54585129 | None:intergenic | 30.0% | |
| TATTATGCCTCCAATAGAAT+TGG | - | chr1_1:54585111-54585130 | None:intergenic | 30.0% | |
| ! | ATTGAACTAACAGGTTTTTC+TGG | + | chr1_1:54585132-54585151 | Msa0029290:intron | 30.0% |
| TCAACCAAATGAAGTAGTAA+TGG | + | chr1_1:54585378-54585397 | Msa0029290:CDS | 30.0% | |
| AACCACTTACATCATCTTTA+AGG | - | chr1_1:54585414-54585433 | None:intergenic | 30.0% | |
| TTTCACAACAAAATCCAGAA+AGG | + | chr1_1:54585563-54585582 | Msa0029290:intron | 30.0% | |
| ! | GTCTACTAGTTAGAACTTTT+AGG | - | chr1_1:54585590-54585609 | None:intergenic | 30.0% |
| TTTACAAGCAATCACACTAT+GGG | - | chr1_1:54585653-54585672 | None:intergenic | 30.0% | |
| ! | TTTTACAAGCAATCACACTA+TGG | - | chr1_1:54585654-54585673 | None:intergenic | 30.0% |
| ATACCAAAATGCATAGTGAA+AGG | - | chr1_1:54585694-54585713 | None:intergenic | 30.0% | |
| !! | TTTGATTTGCAATAAGGATG+AGG | + | chr1_1:54585764-54585783 | Msa0029290:intron | 30.0% |
| !! | TTGATTTGCAATAAGGATGA+GGG | + | chr1_1:54585765-54585784 | Msa0029290:intron | 30.0% |
| TGGAAAATATGTGCATAGAA+TGG | - | chr1_1:54585857-54585876 | None:intergenic | 30.0% | |
| ! | GATTCAGATGTATTTGGAAT+TGG | + | chr1_1:54585891-54585910 | Msa0029290:intron | 30.0% |
| AAATCGACATTAGCATATTC+GGG | - | chr1_1:54586025-54586044 | None:intergenic | 30.0% | |
| GAAATCGACATTAGCATATT+CGG | - | chr1_1:54586026-54586045 | None:intergenic | 30.0% | |
| AATTGAGTAAACTTCAGAGA+GGG | - | chr1_1:54586071-54586090 | None:intergenic | 30.0% | |
| !!! | TTTTTTCATGACCTTACATG+AGG | - | chr1_1:54586221-54586240 | None:intergenic | 30.0% |
| CTATGAACCAAAAAATGTCA+AGG | - | chr1_1:54586250-54586269 | None:intergenic | 30.0% | |
| !!! | CTTGACATTTTTTGGTTCAT+AGG | + | chr1_1:54586248-54586267 | Msa0029290:three_prime_UTR | 30.0% |
| !!! | ACATTTTTTGGTTCATAGGT+GGG | + | chr1_1:54586252-54586271 | Msa0029290:three_prime_UTR | 30.0% |
| !! | GTAAGCTTTATTGACTTCTT+AGG | + | chr1_1:54586316-54586335 | Msa0029290:three_prime_UTR | 30.0% |
| GAATGAATGTCACAAAATAG+TGG | + | chr1_1:54586339-54586358 | Msa0029290:three_prime_UTR | 30.0% | |
| ! | CCGTATATGTAGTTTTTGTG+TGG | - | chr1_1:54583591-54583610 | None:intergenic | 35.0% |
| !!! | TTTTGGTACTTTTCTGAGGT+TGG | - | chr1_1:54583626-54583645 | None:intergenic | 35.0% |
| !!! | TGATGTCAGATTTCTGGTTT+TGG | - | chr1_1:54583643-54583662 | None:intergenic | 35.0% |
| AAATGCTGATGTCAGATTTC+TGG | - | chr1_1:54583649-54583668 | None:intergenic | 35.0% | |
| TCAAGATATCAATTCCAGCA+GGG | - | chr1_1:54583894-54583913 | None:intergenic | 35.0% | |
| TTCAAGATATCAATTCCAGC+AGG | - | chr1_1:54583895-54583914 | None:intergenic | 35.0% | |
| TCTTGAAACTCATTGATCAC+TGG | + | chr1_1:54583908-54583927 | Msa0029290:CDS | 35.0% | |
| ATTTACTACCAGGCATGATT+TGG | - | chr1_1:54584002-54584021 | None:intergenic | 35.0% | |
| TTAGGAGGGGTTTAATTACA+AGG | + | chr1_1:54584129-54584148 | Msa0029290:CDS | 35.0% | |
| ATTTATTCCACCAACGCTTT+GGG | + | chr1_1:54584171-54584190 | Msa0029290:CDS | 35.0% | |
| AACTTGCAACTATTCAGAGT+TGG | + | chr1_1:54584231-54584250 | Msa0029290:intron | 35.0% | |
| ACAACACTGAATATGAAGCA+CGG | - | chr1_1:54584419-54584438 | None:intergenic | 35.0% | |
| GCACAGATTGCAAAAAATAG+TGG | + | chr1_1:54584442-54584461 | Msa0029290:intron | 35.0% | |
| TAGCCGCTATTTAACAACAT+TGG | + | chr1_1:54584507-54584526 | Msa0029290:intron | 35.0% | |
| ! | GCTATTTAACAACATTGGCT+TGG | + | chr1_1:54584512-54584531 | Msa0029290:intron | 35.0% |
| CATGTCAACAAAGGTTTGTA+TGG | + | chr1_1:54584574-54584593 | Msa0029290:intron | 35.0% | |
| ! | GTAAAAGGAATTTGAGACTG+TGG | + | chr1_1:54584766-54584785 | Msa0029290:intron | 35.0% |
| ! | AAGCTATCTTAGAGAGCTTT+TGG | + | chr1_1:54584943-54584962 | Msa0029290:intron | 35.0% |
| ATATTCAATGGCTCATCGTA+TGG | + | chr1_1:54585179-54585198 | Msa0029290:intron | 35.0% | |
| ! | ATTTTCTCCAGCATTAAGCA+GGG | + | chr1_1:54585294-54585313 | Msa0029290:CDS | 35.0% |
| TACTGCATATCTGTTCTCTT+TGG | + | chr1_1:54585350-54585369 | Msa0029290:CDS | 35.0% | |
| ACTGCATATCTGTTCTCTTT+GGG | + | chr1_1:54585351-54585370 | Msa0029290:CDS | 35.0% | |
| CCAAATGAAGTAGTAATGGT+CGG | + | chr1_1:54585382-54585401 | Msa0029290:CDS | 35.0% | |
| CAAATGAAGTAGTAATGGTC+GGG | + | chr1_1:54585383-54585402 | Msa0029290:CDS | 35.0% | |
| AAATGAAGTAGTAATGGTCG+GGG | + | chr1_1:54585384-54585403 | Msa0029290:CDS | 35.0% | |
| AGCCTTAAAGATGATGTAAG+TGG | + | chr1_1:54585409-54585428 | Msa0029290:intron | 35.0% | |
| GATTGTTCATTTGTACCCAA+AGG | - | chr1_1:54585494-54585513 | None:intergenic | 35.0% | |
| !! | TAGAACTTTTAGGTCCTTTC+TGG | - | chr1_1:54585580-54585599 | None:intergenic | 35.0% |
| TGTAAAAGAACCCTATGACT+CGG | + | chr1_1:54585667-54585686 | Msa0029290:intron | 35.0% | |
| TCAAATGCCGGTATTATAAG+TGG | - | chr1_1:54585749-54585768 | None:intergenic | 35.0% | |
| CCTTATTGCAAATCAAATGC+CGG | - | chr1_1:54585761-54585780 | None:intergenic | 35.0% | |
| GAAAGATATTGCTTCAAGCT+GGG | - | chr1_1:54585835-54585854 | None:intergenic | 35.0% | |
| ! | CAGATGTATTTGGAATTGGA+TGG | + | chr1_1:54585895-54585914 | Msa0029290:intron | 35.0% |
| CGATTTCAAACCAGATTTCA+AGG | + | chr1_1:54586039-54586058 | Msa0029290:CDS | 35.0% | |
| GAATTGAGTAAACTTCAGAG+AGG | - | chr1_1:54586072-54586091 | None:intergenic | 35.0% | |
| ATGATATAAGAATCTGGAGG+AGG | + | chr1_1:54586161-54586180 | Msa0029290:three_prime_UTR | 35.0% | |
| TTTATTCCTCACCTCATGTA+AGG | + | chr1_1:54586207-54586226 | Msa0029290:three_prime_UTR | 35.0% | |
| !!! | GACATTTTTTGGTTCATAGG+TGG | + | chr1_1:54586251-54586270 | Msa0029290:three_prime_UTR | 35.0% |
| ! | TACTAGTTTCTTTGGATTCG+CGG | + | chr1_1:54586409-54586428 | Msa0029290:three_prime_UTR | 35.0% |
| ! | TAGTTTTTGTGTGGGACGAA+CGG | - | chr1_1:54583582-54583601 | None:intergenic | 40.0% |
| !!! | CTGGTTTTGGTACTTTTCTG+AGG | - | chr1_1:54583630-54583649 | None:intergenic | 40.0% |
| ! | GAAGAGAAGGAAAGCTTTTG+CGG | - | chr1_1:54583716-54583735 | None:intergenic | 40.0% |
| ATGGAAGGGAAATCAATGAC+GGG | - | chr1_1:54583820-54583839 | None:intergenic | 40.0% | |
| CATGGAAGGGAAATCAATGA+CGG | - | chr1_1:54583821-54583840 | None:intergenic | 40.0% | |
| GATTTATTCCACCAACGCTT+TGG | + | chr1_1:54584170-54584189 | Msa0029290:CDS | 40.0% | |
| TTTATTCCACCAACGCTTTG+GGG | + | chr1_1:54584172-54584191 | Msa0029290:CDS | 40.0% | |
| ! | GTAATTATGTGTGTCGGTGT+CGG | - | chr1_1:54584333-54584352 | None:intergenic | 40.0% |
| CTGAATATGAAGCACGGATA+CGG | - | chr1_1:54584413-54584432 | None:intergenic | 40.0% | |
| ! | GAATTTGAGACTGTGGCATT+TGG | + | chr1_1:54584773-54584792 | Msa0029290:intron | 40.0% |
| AAATGTAATCTGCAGCAACG+AGG | - | chr1_1:54585278-54585297 | None:intergenic | 40.0% | |
| ! | CATTTTCTCCAGCATTAAGC+AGG | + | chr1_1:54585293-54585312 | Msa0029290:CDS | 40.0% |
| AGAGAACAGATATGCAGTAG+TGG | - | chr1_1:54585349-54585368 | None:intergenic | 40.0% | |
| CCGACCATTACTACTTCATT+TGG | - | chr1_1:54585385-54585404 | None:intergenic | 40.0% | |
| AAGCCATAATTGTCCACCTT+TGG | + | chr1_1:54585475-54585494 | Msa0029290:intron | 40.0% | |
| AGCCATAATTGTCCACCTTT+GGG | + | chr1_1:54585476-54585495 | Msa0029290:intron | 40.0% | |
| TACCCAAAGGTGGACAATTA+TGG | - | chr1_1:54585481-54585500 | None:intergenic | 40.0% | |
| TGTTCATTTGTACCCAAAGG+TGG | - | chr1_1:54585491-54585510 | None:intergenic | 40.0% | |
| ! | GGTCCTTTCACTATGCATTT+TGG | + | chr1_1:54585688-54585707 | Msa0029290:intron | 40.0% |
| !! | CCGGCATTTGATTTGCAATA+AGG | + | chr1_1:54585758-54585777 | Msa0029290:intron | 40.0% |
| ATAAATAAGTGGCCTGCACA+GGG | + | chr1_1:54585800-54585819 | Msa0029290:intron | 40.0% | |
| GGAAAGATATTGCTTCAAGC+TGG | - | chr1_1:54585836-54585855 | None:intergenic | 40.0% | |
| ! | ACCATTTTGCAGATTGCTTG+TGG | + | chr1_1:54585944-54585963 | Msa0029290:intron | 40.0% |
| TCCACAAGCAATCTGCAAAA+TGG | - | chr1_1:54585948-54585967 | None:intergenic | 40.0% | |
| ! | ATTTTGCAGATTGCTTGTGG+AGG | + | chr1_1:54585947-54585966 | Msa0029290:intron | 40.0% |
| ! | TTTTGCAGATTGCTTGTGGA+GGG | + | chr1_1:54585948-54585967 | Msa0029290:intron | 40.0% |
| ACTTGTCTGCTTGATCAAAC+TGG | + | chr1_1:54585986-54586005 | Msa0029290:CDS | 40.0% | |
| AGGGAAGTTACCTTGAAATC+TGG | - | chr1_1:54586052-54586071 | None:intergenic | 40.0% | |
| GCGAACAAAACTTGAGATCA+TGG | - | chr1_1:54586118-54586137 | None:intergenic | 40.0% | |
| ! | ACTAGTTTCTTTGGATTCGC+GGG | + | chr1_1:54586410-54586429 | Msa0029290:three_prime_UTR | 40.0% |
| TGCTAATAACTGATCAGCCT+TGG | - | chr1_1:54586505-54586524 | None:intergenic | 40.0% | |
| GGTGGTTAAGTGTGATGACA+TGG | - | chr1_1:54583746-54583765 | None:intergenic | 45.0% | |
| TGGAAGGGAAATCAATGACG+GGG | - | chr1_1:54583819-54583838 | None:intergenic | 45.0% | |
| GTACTGCTTTGTGCATGGAA+GGG | - | chr1_1:54583834-54583853 | None:intergenic | 45.0% | |
| AGTACTGCTTTGTGCATGGA+AGG | - | chr1_1:54583835-54583854 | None:intergenic | 45.0% | |
| TCCATGCACAAAGCAGTACT+CGG | + | chr1_1:54583835-54583854 | Msa0029290:CDS | 45.0% | |
| ATCAATTCCAGCAGGGTTTG+AGG | - | chr1_1:54583887-54583906 | None:intergenic | 45.0% | |
| GAGCAATGGTATCATAGGCT+TGG | - | chr1_1:54583951-54583970 | None:intergenic | 45.0% | |
| ! | TACTACCAGGCATGATTTGG+AGG | - | chr1_1:54583999-54584018 | None:intergenic | 45.0% |
| TAAAACTGACCCCAAAGCGT+TGG | - | chr1_1:54584184-54584203 | None:intergenic | 45.0% | |
| GGACACGGACAACTAATTTG+AGG | - | chr1_1:54584312-54584331 | None:intergenic | 45.0% | |
| ATGAAGCACGGATACGGATA+CGG | - | chr1_1:54584407-54584426 | None:intergenic | 45.0% | |
| AATGGCTCATCGTATGGTGA+AGG | + | chr1_1:54585185-54585204 | Msa0029290:intron | 45.0% | |
| CGAAATTCCCTGCTTAATGC+TGG | - | chr1_1:54585304-54585323 | None:intergenic | 45.0% | |
| GGAGCTGGATCAGGTTTATA+AGG | - | chr1_1:54585328-54585347 | None:intergenic | 45.0% | |
| AGTGAAAGGACCGAGTCATA+GGG | - | chr1_1:54585680-54585699 | None:intergenic | 45.0% | |
| TAGTGAAAGGACCGAGTCAT+AGG | - | chr1_1:54585681-54585700 | None:intergenic | 45.0% | |
| CATAAATAAGTGGCCTGCAC+AGG | + | chr1_1:54585799-54585818 | Msa0029290:intron | 45.0% | |
| GTCTGCTTGATCAAACTGGA+AGG | + | chr1_1:54585990-54586009 | Msa0029290:CDS | 45.0% | |
| !!! | GATCTCAAGTTTTGTTCGCG+TGG | + | chr1_1:54586119-54586138 | Msa0029290:exon | 45.0% |
| !!! | CGCGTGGACCATTTATTTTG+TGG | + | chr1_1:54586135-54586154 | Msa0029290:three_prime_UTR | 45.0% |
| GAGGAGGTGACATCTACATT+TGG | + | chr1_1:54586177-54586196 | Msa0029290:three_prime_UTR | 45.0% | |
| GAGGTGACATCTACATTTGG+AGG | + | chr1_1:54586180-54586199 | Msa0029290:three_prime_UTR | 45.0% | |
| TCATGACCTTACATGAGGTG+AGG | - | chr1_1:54586216-54586235 | None:intergenic | 45.0% | |
| ACGCGCAATATCGTGTCAAA+CGG | - | chr1_1:54586472-54586491 | None:intergenic | 45.0% | |
| TGCGCGTGTTAAGATTTCCA+AGG | + | chr1_1:54586485-54586504 | Msa0029290:three_prime_UTR | 45.0% | |
| ! | GCTTTTGCGGAAGAGAGCAA+TGG | - | chr1_1:54583703-54583722 | None:intergenic | 50.0% |
| AGTGTGATGACATGGTGCGT+GGG | - | chr1_1:54583738-54583757 | None:intergenic | 50.0% | |
| AAGTGTGATGACATGGTGCG+TGG | - | chr1_1:54583739-54583758 | None:intergenic | 50.0% | |
| ! | AGGGAAATCAATGACGGGGA+CGG | - | chr1_1:54583815-54583834 | None:intergenic | 50.0% |
| TAGGCTTGGCGTTGTTGATG+TGG | - | chr1_1:54583937-54583956 | None:intergenic | 50.0% | |
| GATCACCTCCAAATCATGCC+TGG | + | chr1_1:54583991-54584010 | Msa0029290:CDS | 50.0% | |
| ! | CAGATATGCAGTAGTGGAGC+TGG | - | chr1_1:54585343-54585362 | None:intergenic | 50.0% |
| CGCGCAATATCGTGTCAAAC+GGG | - | chr1_1:54586471-54586490 | None:intergenic | 50.0% | |
| ACATGGTGCGTGGGAAGAGA+AGG | - | chr1_1:54583729-54583748 | None:intergenic | 55.0% | |
| CCATGTCGAAAACGACGCCA+CGG | - | chr1_1:54583780-54583799 | None:intergenic | 55.0% | |
| !! | GGCGTCGTTTTCGACATGGA+CGG | + | chr1_1:54583781-54583800 | Msa0029290:CDS | 55.0% |
| ! | GCCGAGTACTGCTTTGTGCA+TGG | - | chr1_1:54583839-54583858 | None:intergenic | 55.0% |
| GTCAAAGCCTCAAACCCTGC+TGG | + | chr1_1:54583877-54583896 | Msa0029290:CDS | 55.0% | |
| !! | AACTGACCCCAAAGCGTTGG+TGG | - | chr1_1:54584181-54584200 | None:intergenic | 55.0% |
| !! | ATGTGTGTCGGTGTCGGACA+CGG | - | chr1_1:54584327-54584346 | None:intergenic | 55.0% |
| ! | TGCAGTAGTGGAGCTGGATC+AGG | - | chr1_1:54585337-54585356 | None:intergenic | 55.0% |
| GGGTTGAAGTTACCCTGTGC+AGG | - | chr1_1:54585815-54585834 | None:intergenic | 55.0% | |
| TGTCGAAAACGACGCCACGG+AGG | - | chr1_1:54583777-54583796 | None:intergenic | 60.0% | |
| !! | CCGTGGCGTCGTTTTCGACA+TGG | + | chr1_1:54583777-54583796 | Msa0029290:CDS | 60.0% |
| ATTGCTTGTGGAGGGCGAGC+AGG | + | chr1_1:54585956-54585975 | Msa0029290:CDS | 60.0% | |
| ACCACCAAAACGCGCCTCCG+TGG | + | chr1_1:54583760-54583779 | Msa0029290:CDS | 65.0% | |
| !! | GCCACGGAGGCGCGTTTTGG+TGG | - | chr1_1:54583764-54583783 | None:intergenic | 70.0% |
| !! | GACGCCACGGAGGCGCGTTT+TGG | - | chr1_1:54583767-54583786 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 54583561 | 54586538 | 54583561 | ID=Msa0029290;Name=Msa0029290 |
| chr1_1 | mRNA | 54583561 | 54586538 | 54583561 | ID=Msa0029290-mRNA-1;Parent=Msa0029290;Name=Msa0029290-mRNA-1;_AED=0.05;_eAED=0.05;_QI=136|0.66|0.75|1|1|1|4|418|240 |
| chr1_1 | exon | 54583561 | 54584015 | 54583561 | ID=Msa0029290-mRNA-1:exon:16275;Parent=Msa0029290-mRNA-1 |
| chr1_1 | exon | 54584090 | 54584193 | 54584090 | ID=Msa0029290-mRNA-1:exon:16276;Parent=Msa0029290-mRNA-1 |
| chr1_1 | exon | 54585289 | 54585423 | 54585289 | ID=Msa0029290-mRNA-1:exon:16277;Parent=Msa0029290-mRNA-1 |
| chr1_1 | exon | 54585956 | 54586538 | 54585956 | ID=Msa0029290-mRNA-1:exon:16278;Parent=Msa0029290-mRNA-1 |
| chr1_1 | five_prime_UTR | 54583561 | 54583696 | 54583561 | ID=Msa0029290-mRNA-1:five_prime_utr;Parent=Msa0029290-mRNA-1 |
| chr1_1 | CDS | 54583697 | 54584015 | 54583697 | ID=Msa0029290-mRNA-1:cds;Parent=Msa0029290-mRNA-1 |
| chr1_1 | CDS | 54584090 | 54584193 | 54584090 | ID=Msa0029290-mRNA-1:cds;Parent=Msa0029290-mRNA-1 |
| chr1_1 | CDS | 54585289 | 54585423 | 54585289 | ID=Msa0029290-mRNA-1:cds;Parent=Msa0029290-mRNA-1 |
| chr1_1 | CDS | 54585956 | 54586120 | 54585956 | ID=Msa0029290-mRNA-1:cds;Parent=Msa0029290-mRNA-1 |
| chr1_1 | three_prime_UTR | 54586121 | 54586538 | 54586121 | ID=Msa0029290-mRNA-1:three_prime_utr;Parent=Msa0029290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
