Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0242280 | XP_003594743.2 | 93.333 | 105 | 7 | 0 | 3 | 107 | 84 | 188 | 4.81e-62 | 205 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0242280 | A2Q2W7 | 93.333 | 105 | 7 | 0 | 3 | 107 | 84 | 188 | 2.30e-62 | 205 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006700 | Msa0242280 | 0.819123 | 1.370311e-52 | -8.615850e-47 |
| Msa0017120 | Msa0242280 | 0.806299 | 8.799560e-50 | -8.615850e-47 |
| Msa0020630 | Msa0242280 | 0.822542 | 2.240272e-53 | -8.615850e-47 |
| Msa0024680 | Msa0242280 | 0.802684 | 4.992266e-49 | -8.615850e-47 |
| Msa0043940 | Msa0242280 | 0.822699 | 2.059878e-53 | -8.615850e-47 |
| Msa0044710 | Msa0242280 | 0.808427 | 3.113103e-50 | -8.615850e-47 |
| Msa0047470 | Msa0242280 | 0.801650 | 8.146521e-49 | -8.615850e-47 |
| Msa0050720 | Msa0242280 | 0.810825 | 9.506988e-51 | -8.615850e-47 |
| Msa0050770 | Msa0242280 | 0.800518 | 1.387861e-48 | -8.615850e-47 |
| Msa0055280 | Msa0242280 | 0.808174 | 3.526110e-50 | -8.615850e-47 |
| Msa0060350 | Msa0242280 | 0.808217 | 3.452674e-50 | -8.615850e-47 |
| Msa0060600 | Msa0242280 | 0.804900 | 1.730279e-49 | -8.615850e-47 |
| Msa0079250 | Msa0242280 | 0.806011 | 1.012066e-49 | -8.615850e-47 |
| Msa0079770 | Msa0242280 | 0.807954 | 3.926690e-50 | -8.615850e-47 |
| Msa0083160 | Msa0242280 | 0.801024 | 1.094405e-48 | -8.615850e-47 |
| Msa0092710 | Msa0242280 | 0.817453 | 3.271761e-52 | -8.615850e-47 |
| Msa0094100 | Msa0242280 | 0.815027 | 1.140823e-51 | -8.615850e-47 |
| Msa0105340 | Msa0242280 | 0.804405 | 2.195142e-49 | -8.615850e-47 |
| Msa0114250 | Msa0242280 | 0.825602 | 4.286422e-54 | -8.615850e-47 |
| Msa0127440 | Msa0242280 | 0.807905 | 4.022791e-50 | -8.615850e-47 |
| Msa0141550 | Msa0242280 | 0.813718 | 2.220717e-51 | -8.615850e-47 |
| Msa0143970 | Msa0242280 | 0.816651 | 4.954071e-52 | -8.615850e-47 |
| Msa0145950 | Msa0242280 | 0.804391 | 2.209477e-49 | -8.615850e-47 |
| Msa0153430 | Msa0242280 | 0.810020 | 1.418500e-50 | -8.615850e-47 |
| Msa0159750 | Msa0242280 | 0.825774 | 3.901561e-54 | -8.615850e-47 |
| Msa0168100 | Msa0242280 | 0.804400 | 2.199857e-49 | -8.615850e-47 |
| Msa0182640 | Msa0242280 | 0.835565 | 1.558330e-56 | -8.615850e-47 |
| Msa0193760 | Msa0242280 | 0.826689 | 2.363899e-54 | -8.615850e-47 |
| Msa0199730 | Msa0242280 | 0.845055 | 5.155938e-59 | -8.615850e-47 |
| Msa0207000 | Msa0242280 | 0.800320 | 1.523344e-48 | -8.615850e-47 |
| Msa0208630 | Msa0242280 | 0.851585 | 8.062383e-61 | -8.615850e-47 |
| Msa0213080 | Msa0242280 | 0.827462 | 1.543481e-54 | -8.615850e-47 |
| Msa0217470 | Msa0242280 | 0.813137 | 2.979911e-51 | -8.615850e-47 |
| Msa0223100 | Msa0242280 | 0.801722 | 7.875206e-49 | -8.615850e-47 |
| Msa0223290 | Msa0242280 | 0.818700 | 1.709667e-52 | -8.615850e-47 |
| Msa0223380 | Msa0242280 | 0.801968 | 7.008567e-49 | -8.615850e-47 |
| Msa0235550 | Msa0242280 | 0.833040 | 6.701146e-56 | -8.615850e-47 |
| Msa0242280 | Msa0242290 | 0.842297 | 2.818329e-58 | -8.615850e-47 |
| Msa0242280 | Msa0265820 | 0.814862 | 1.240925e-51 | -8.615850e-47 |
| Msa0242280 | Msa0274520 | 0.845456 | 4.015979e-59 | -8.615850e-47 |
| Msa0242280 | Msa0275030 | 0.813969 | 1.955748e-51 | -8.615850e-47 |
| Msa0242280 | Msa0280490 | 0.820902 | 5.364999e-53 | -8.615850e-47 |
| Msa0242280 | Msa0288330 | 0.801812 | 7.544819e-49 | -8.615850e-47 |
| Msa0242280 | Msa0296610 | 0.822158 | 2.750468e-53 | -8.615850e-47 |
| Msa0242280 | Msa0296760 | 0.807280 | 5.460954e-50 | -8.615850e-47 |
| Msa0242280 | Msa0318270 | 0.819166 | 1.339400e-52 | -8.615850e-47 |
| Msa0242280 | Msa0318310 | 0.820176 | 7.878370e-53 | -8.615850e-47 |
| Msa0242280 | Msa0323630 | 0.801098 | 1.056965e-48 | -8.615850e-47 |
| Msa0242280 | Msa0326670 | 0.807759 | 4.319758e-50 | -8.615850e-47 |
| Msa0242280 | Msa0334980 | 0.818344 | 2.058810e-52 | -8.615850e-47 |
| Msa0242280 | Msa0357380 | 0.836449 | 9.299957e-57 | -8.615850e-47 |
| Msa0242280 | Msa0357390 | 0.834884 | 2.315754e-56 | -8.615850e-47 |
| Msa0242280 | Msa0371570 | 0.803893 | 2.805405e-49 | -8.615850e-47 |
| Msa0242280 | Msa0380040 | 0.811245 | 7.711202e-51 | -8.615850e-47 |
| Msa0242280 | Msa0411280 | 0.800272 | 1.558179e-48 | -8.615850e-47 |
| Msa0242280 | Msa0411560 | 0.814255 | 1.690733e-51 | -8.615850e-47 |
| Msa0242280 | Msa0413740 | 0.813708 | 2.232145e-51 | -8.615850e-47 |
| Msa0242280 | Msa0419990 | 0.812036 | 5.189624e-51 | -8.615850e-47 |
| Msa0242280 | Msa0429290 | 0.804290 | 2.319517e-49 | -8.615850e-47 |
| Msa0242280 | Msa0431520 | 0.806859 | 6.704094e-50 | -8.615850e-47 |
| Msa0242280 | Msa0431830 | 0.814948 | 1.187952e-51 | -8.615850e-47 |
| Msa0242280 | Msa0462590 | 0.807023 | 6.189396e-50 | -8.615850e-47 |
| Msa0242280 | Msa0473530 | 0.813780 | 2.152273e-51 | -8.615850e-47 |
| Msa0242280 | Msa0475580 | 0.802307 | 5.968811e-49 | -8.615850e-47 |
| Msa0242280 | Msa0480320 | 0.824506 | 7.777525e-54 | -8.615850e-47 |
| Msa0242280 | Msa0486530 | 0.809362 | 1.964492e-50 | -8.615850e-47 |
| Msa0242280 | Msa0490300 | 0.804483 | 2.114352e-49 | -8.615850e-47 |
| Msa0242280 | Msa0490350 | 0.814807 | 1.276749e-51 | -8.615850e-47 |
| Msa0242280 | Msa0505390 | 0.814684 | 1.359456e-51 | -8.615850e-47 |
| Msa0242280 | Msa0508200 | 0.824547 | 7.609599e-54 | -8.615850e-47 |
| Msa0242280 | Msa0519220 | 0.800735 | 1.253354e-48 | -8.615850e-47 |
| Msa0242280 | Msa0524050 | 0.800359 | 1.495766e-48 | -8.615850e-47 |
| Msa0242280 | Msa0524890 | -0.804883 | 1.744012e-49 | -8.615850e-47 |
| Msa0242280 | Msa0530930 | 0.842605 | 2.335233e-58 | -8.615850e-47 |
| Msa0242280 | Msa0533010 | 0.801028 | 1.092330e-48 | -8.615850e-47 |
| Msa0242280 | Msa0535030 | 0.827604 | 1.427106e-54 | -8.615850e-47 |
| Msa0242280 | Msa0535060 | 0.832107 | 1.141789e-55 | -8.615850e-47 |
| Msa0242280 | Msa0546380 | 0.806324 | 8.695827e-50 | -8.615850e-47 |
| Msa0242280 | Msa0549740 | 0.805810 | 1.115504e-49 | -8.615850e-47 |
| Msa0242280 | Msa0564930 | 0.805379 | 1.373729e-49 | -8.615850e-47 |
| Msa0242280 | Msa0577230 | 0.809278 | 2.047854e-50 | -8.615850e-47 |
| Msa0242280 | Msa0583790 | 0.800579 | 1.349199e-48 | -8.615850e-47 |
| Msa0242280 | Msa0587900 | 0.813857 | 2.070396e-51 | -8.615850e-47 |
| Msa0242280 | Msa0591770 | 0.818557 | 1.841891e-52 | -8.615850e-47 |
| Msa0242280 | Msa0596100 | 0.800582 | 1.346912e-48 | -8.615850e-47 |
| Msa0242280 | Msa0605620 | 0.807302 | 5.400683e-50 | -8.615850e-47 |
| Msa0242280 | Msa0607200 | 0.807531 | 4.829443e-50 | -8.615850e-47 |
| Msa0242280 | Msa0620640 | 0.811943 | 5.437094e-51 | -8.615850e-47 |
| Msa0242280 | Msa0628060 | 0.810076 | 1.379578e-50 | -8.615850e-47 |
| Msa0242280 | Msa0647000 | 0.811169 | 8.009657e-51 | -8.615850e-47 |
| Msa0242280 | Msa0651400 | 0.830565 | 2.733439e-55 | -8.615850e-47 |
| Msa0242280 | Msa0657670 | 0.801762 | 7.727678e-49 | -8.615850e-47 |
| Msa0242280 | Msa0667970 | 0.801531 | 8.615642e-49 | -8.615850e-47 |
| Msa0242280 | Msa0669850 | 0.810293 | 1.238928e-50 | -8.615850e-47 |
| Msa0242280 | Msa0674220 | 0.803023 | 4.248249e-49 | -8.615850e-47 |
| Msa0242280 | Msa0690350 | 0.816330 | 5.846821e-52 | -8.615850e-47 |
| Msa0242280 | Msa0719340 | 0.813634 | 2.317596e-51 | -8.615850e-47 |
| Msa0242280 | Msa0720270 | 0.804106 | 2.532435e-49 | -8.615850e-47 |
| Msa0242280 | Msa0730180 | 0.812326 | 4.484659e-51 | -8.615850e-47 |
| Msa0242280 | Msa0733000 | 0.818162 | 2.263599e-52 | -8.615850e-47 |
| Msa0242280 | Msa0734660 | 0.801349 | 9.387737e-49 | -8.615850e-47 |
| Msa0242280 | Msa0743640 | 0.800942 | 1.137183e-48 | -8.615850e-47 |
| Msa0242280 | Msa0750380 | 0.813587 | 2.373787e-51 | -8.615850e-47 |
| Msa0242280 | Msa0756480 | 0.807141 | 5.842856e-50 | -8.615850e-47 |
| Msa0242280 | Msa0760890 | 0.845468 | 3.986236e-59 | -8.615850e-47 |
| Msa0242280 | Msa0761640 | 0.814782 | 1.293068e-51 | -8.615850e-47 |
| Msa0242280 | Msa0770430 | 0.820581 | 6.360438e-53 | -8.615850e-47 |
| Msa0242280 | Msa0772150 | 0.815732 | 7.952362e-52 | -8.615850e-47 |
| Msa0242280 | Msa0787720 | 0.805868 | 1.084486e-49 | -8.615850e-47 |
| Msa0242280 | Msa0789270 | 0.801245 | 9.863832e-49 | -8.615850e-47 |
| Msa0242280 | Msa0789280 | 0.804244 | 2.370760e-49 | -8.615850e-47 |
| Msa0242280 | Msa0789290 | 0.802590 | 5.218682e-49 | -8.615850e-47 |
| Msa0242280 | Msa0789300 | 0.800598 | 1.337199e-48 | -8.615850e-47 |
| Msa0242280 | Msa0811510 | 0.814259 | 1.687873e-51 | -8.615850e-47 |
| Msa0242280 | Msa0828570 | 0.815530 | 8.818078e-52 | -8.615850e-47 |
| Msa0242280 | Msa0830720 | 0.810266 | 1.255434e-50 | -8.615850e-47 |
| Msa0242280 | Msa0835510 | 0.802757 | 4.820818e-49 | -8.615850e-47 |
| Msa0242280 | Msa0847200 | 0.814285 | 1.665024e-51 | -8.615850e-47 |
| Msa0242280 | Msa0848380 | 0.813353 | 2.672397e-51 | -8.615850e-47 |
| Msa0242280 | Msa0851740 | 0.822742 | 2.012774e-53 | -8.615850e-47 |
| Msa0242280 | Msa0853170 | 0.800907 | 1.156289e-48 | -8.615850e-47 |
| Msa0242280 | Msa0863760 | 0.801181 | 1.016205e-48 | -8.615850e-47 |
| Msa0242280 | Msa0874760 | 0.802273 | 6.067986e-49 | -8.615850e-47 |
| Msa0242280 | Msa0890250 | 0.808586 | 2.879461e-50 | -8.615850e-47 |
| Msa0242280 | Msa0909710 | 0.814306 | 1.647382e-51 | -8.615850e-47 |
| Msa0242280 | Msa0934830 | 0.804342 | 2.262426e-49 | -8.615850e-47 |
| Msa0242280 | Msa0937940 | 0.814666 | 1.371778e-51 | -8.615850e-47 |
| Msa0242280 | Msa0946320 | 0.801432 | 9.028713e-49 | -8.615850e-47 |
| Msa0242280 | Msa0950620 | 0.840085 | 1.075441e-57 | -8.615850e-47 |
| Msa0242280 | Msa0955260 | 0.802801 | 4.722336e-49 | -8.615850e-47 |
| Msa0242280 | Msa0964680 | 0.813245 | 2.822453e-51 | -8.615850e-47 |
| Msa0242280 | Msa0971860 | 0.808879 | 2.492931e-50 | -8.615850e-47 |
| Msa0242280 | Msa1004210 | 0.821413 | 4.090943e-53 | -8.615850e-47 |
| Msa0242280 | Msa1014350 | 0.808422 | 3.121072e-50 | -8.615850e-47 |
| Msa0242280 | Msa1015060 | 0.812820 | 3.496808e-51 | -8.615850e-47 |
| Msa0242280 | Msa1026760 | 0.800011 | 1.760687e-48 | -8.615850e-47 |
| Msa0242280 | Msa1044040 | 0.819219 | 1.302902e-52 | -8.615850e-47 |
| Msa0242280 | Msa1044340 | 0.803989 | 2.679507e-49 | -8.615850e-47 |
| Msa0242280 | Msa1046610 | 0.833296 | 5.784452e-56 | -8.615850e-47 |
| Msa0242280 | Msa1058010 | 0.800414 | 1.457234e-48 | -8.615850e-47 |
| Msa0242280 | Msa1080460 | 0.806511 | 7.939763e-50 | -8.615850e-47 |
| Msa0242280 | Msa1093390 | 0.805986 | 1.024107e-49 | -8.615850e-47 |
| Msa0242280 | Msa1095480 | 0.802001 | 6.901035e-49 | -8.615850e-47 |
| Msa0242280 | Msa1097380 | 0.809471 | 1.861855e-50 | -8.615850e-47 |
| Msa0242280 | Msa1100260 | 0.802451 | 5.576638e-49 | -8.615850e-47 |
| Msa0242280 | Msa1102540 | 0.802728 | 4.888011e-49 | -8.615850e-47 |
| Msa0242280 | Msa1113200 | 0.803754 | 2.997632e-49 | -8.615850e-47 |
| Msa0242280 | Msa1122510 | 0.805113 | 1.561203e-49 | -8.615850e-47 |
| Msa0242280 | Msa1150230 | 0.816181 | 6.312847e-52 | -8.615850e-47 |
| Msa0242280 | Msa1182830 | 0.822797 | 1.954205e-53 | -8.615850e-47 |
| Msa0242280 | Msa1184580 | 0.825648 | 4.179256e-54 | -8.615850e-47 |
| Msa0242280 | Msa1184730 | 0.805861 | 1.087919e-49 | -8.615850e-47 |
| Msa0242280 | Msa1238700 | 0.807312 | 5.374028e-50 | -8.615850e-47 |
| Msa0242280 | Msa1262310 | 0.804523 | 2.073327e-49 | -8.615850e-47 |
| Msa0242280 | Msa1280130 | 0.828822 | 7.259797e-55 | -8.615850e-47 |
| Msa0242280 | Msa1326000 | 0.813735 | 2.201578e-51 | -8.615850e-47 |
| Msa0242280 | Msa1337090 | 0.807252 | 5.535474e-50 | -8.615850e-47 |
| Msa0242280 | Msa1343340 | 0.800463 | 1.424520e-48 | -8.615850e-47 |
| Msa0242280 | Msa1373950 | 0.801815 | 7.536825e-49 | -8.615850e-47 |
| Msa0242280 | Msa1374440 | 0.800260 | 1.566851e-48 | -8.615850e-47 |
| Msa0242280 | Msa1385620 | 0.827433 | 1.569114e-54 | -8.615850e-47 |
| Msa0242280 | Msa1412080 | 0.802997 | 4.301511e-49 | -8.615850e-47 |
| Msa0242280 | Msa1412520 | 0.806551 | 7.787790e-50 | -8.615850e-47 |
| Msa0242280 | Msa1418200 | 0.816789 | 4.614095e-52 | -8.615850e-47 |
| Msa0242280 | Msa1427830 | 0.803637 | 3.170258e-49 | -8.615850e-47 |
| Msa0242280 | Msa1432640 | 0.815560 | 8.684338e-52 | -8.615850e-47 |
| Msa0242280 | Msa1439120 | 0.819692 | 1.016099e-52 | -8.615850e-47 |
| Msa0242280 | Msa1440180 | 0.802353 | 5.841511e-49 | -8.615850e-47 |
| Msa0242280 | Msa1440220 | 0.835242 | 1.880617e-56 | -8.615850e-47 |
| Msa0242280 | Msa1440610 | 0.816258 | 6.068614e-52 | -8.615850e-47 |
| Msa0242280 | Msa1442290 | 0.800403 | 1.465107e-48 | -8.615850e-47 |
| Msa0242280 | Msa1449740 | 0.807892 | 4.048464e-50 | -8.615850e-47 |
| Msa0242280 | Msa1454110 | 0.806315 | 8.730361e-50 | -8.615850e-47 |
| Msa0242280 | Msa1455660 | 0.822886 | 1.863751e-53 | -8.615850e-47 |
| Msa0242280 | Msa1456810 | 0.803357 | 3.623442e-49 | -8.615850e-47 |
| Msa0242280 | Msa1461250 | -0.803030 | 4.235133e-49 | -8.615850e-47 |
| Msa0242280 | Msa1464560 | 0.811142 | 8.118062e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0242280 | MtrunA17_Chr2g0294391 | 93.333 | 105 | 7 | 0 | 3 | 107 | 84 | 188 | 4.42e-66 | 205 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 22 sgRNAs with CRISPR-Local
Find 32 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAGTACTCTTGGTGTTT+CGG | 0.308560 | 2_2:+18373081 | None:intergenic |
| ACATCTTATGCTGCCTTAGA+AGG | 0.333220 | 2_2:-18373476 | Msa0242280:CDS |
| GTGAAGATCTTTATCATCAT+TGG | 0.352123 | 2_2:+18373434 | None:intergenic |
| TATGCTGCCTTAGAAGGCCT+TGG | 0.364084 | 2_2:-18373470 | Msa0242280:CDS |
| TCATCACCCAAGGCCTTCTA+AGG | 0.373122 | 2_2:+18373463 | None:intergenic |
| GTTAAAACCTTTAGTACTCT+TGG | 0.395381 | 2_2:+18373073 | None:intergenic |
| TTTGTGAAGTAGATTTCTCT+TGG | 0.408141 | 2_2:+18373116 | None:intergenic |
| ATGCTGCCTTAGAAGGCCTT+GGG | 0.429919 | 2_2:-18373469 | Msa0242280:CDS |
| TGGACTGAGATTGCATTAGC+AGG | 0.444573 | 2_2:+18373136 | None:intergenic |
| AACGGTACGGAGCGCTGCTA+TGG | 0.484247 | 2_2:-18372941 | Msa0242280:CDS |
| CGAAACACCAAGAGTACTAA+AGG | 0.504880 | 2_2:-18373080 | Msa0242280:intron |
| CAGTCCGATGGACAGTCCTC+GGG | 0.520332 | 2_2:+18373184 | None:intergenic |
| ACAGTCCGATGGACAGTCCT+CGG | 0.535368 | 2_2:+18373183 | None:intergenic |
| CATGCAGGACGGAGTTATAA+CGG | 0.542641 | 2_2:-18372959 | Msa0242280:intron |
| ACGGAGCGCTGCTATGGCTG+TGG | 0.552365 | 2_2:-18372935 | Msa0242280:CDS |
| GTTGTGAGTGCTGTGAATGA+AGG | 0.582088 | 2_2:-18373516 | Msa0242280:CDS |
| GGACTGAGATTGCATTAGCA+GGG | 0.593113 | 2_2:+18373137 | None:intergenic |
| TGATCCCGAGGACTGTCCAT+CGG | 0.604988 | 2_2:-18373188 | Msa0242280:CDS |
| CTTAACAGAATTTGATCCCG+AGG | 0.610386 | 2_2:-18373200 | Msa0242280:intron |
| CAAGGGCGTGAACAGTCCGA+TGG | 0.641778 | 2_2:+18373172 | None:intergenic |
| TTGGCACTGATCATCACCCA+AGG | 0.656005 | 2_2:+18373453 | None:intergenic |
| AGGACGGAGTTATAACGGTA+CGG | 0.662658 | 2_2:-18372954 | Msa0242280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAACTTGTGATGTTTAAT+TGG | - | chr2_2:18373476-18373495 | Msa0242280:CDS | 20.0% |
| ! | AAAAAAAAGAACTGTCTTAC+TGG | + | chr2_2:18373066-18373085 | None:intergenic | 25.0% |
| ! | AAAGTTTAATCTATGCTTAC+CGG | - | chr2_2:18373212-18373231 | Msa0242280:intron | 25.0% |
| GTGAAGATCTTTATCATCAT+TGG | + | chr2_2:18373033-18373052 | None:intergenic | 30.0% | |
| TAACAACATTGAGTGATTAC+CGG | + | chr2_2:18373234-18373253 | None:intergenic | 30.0% | |
| TTTGTGAAGTAGATTTCTCT+TGG | + | chr2_2:18373351-18373370 | None:intergenic | 30.0% | |
| GTTAAAACCTTTAGTACTCT+TGG | + | chr2_2:18373394-18373413 | None:intergenic | 30.0% | |
| TTTAATTGGATTGAACATGC+AGG | - | chr2_2:18373490-18373509 | Msa0242280:CDS | 30.0% | |
| !! | CTTTAGTACTCTTGGTGTTT+CGG | + | chr2_2:18373386-18373405 | None:intergenic | 35.0% |
| ! | ATTTTATCATAGGGGCAAAC+TGG | + | chr2_2:18373565-18373584 | None:intergenic | 35.0% |
| ACATCTTATGCTGCCTTAGA+AGG | - | chr2_2:18372988-18373007 | Msa0242280:intron | 40.0% | |
| CTTAACAGAATTTGATCCCG+AGG | - | chr2_2:18373264-18373283 | Msa0242280:intron | 40.0% | |
| ! | CAGGGCAAACATTTTCACAA+GGG | + | chr2_2:18373312-18373331 | None:intergenic | 40.0% |
| !! | CGAAACACCAAGAGTACTAA+AGG | - | chr2_2:18373384-18373403 | Msa0242280:intron | 40.0% |
| ATTGGATTGAACATGCAGGA+CGG | - | chr2_2:18373494-18373513 | Msa0242280:CDS | 40.0% | |
| ! | GTTGTGAGTGCTGTGAATGA+AGG | - | chr2_2:18372948-18372967 | Msa0242280:CDS | 45.0% |
| GTATGCTGACGTGTGATGTA+TGG | + | chr2_2:18373157-18373176 | None:intergenic | 45.0% | |
| ! | GCAGGGCAAACATTTTCACA+AGG | + | chr2_2:18373313-18373332 | None:intergenic | 45.0% |
| GGACTGAGATTGCATTAGCA+GGG | + | chr2_2:18373330-18373349 | None:intergenic | 45.0% | |
| TGGACTGAGATTGCATTAGC+AGG | + | chr2_2:18373331-18373350 | None:intergenic | 45.0% | |
| CATGCAGGACGGAGTTATAA+CGG | - | chr2_2:18373505-18373524 | Msa0242280:CDS | 45.0% | |
| AGGACGGAGTTATAACGGTA+CGG | - | chr2_2:18373510-18373529 | Msa0242280:CDS | 45.0% | |
| TATGCTGCCTTAGAAGGCCT+TGG | - | chr2_2:18372994-18373013 | Msa0242280:intron | 50.0% | |
| ATGCTGCCTTAGAAGGCCTT+GGG | - | chr2_2:18372995-18373014 | Msa0242280:intron | 50.0% | |
| TCATCACCCAAGGCCTTCTA+AGG | + | chr2_2:18373004-18373023 | None:intergenic | 50.0% | |
| !! | TTGGCACTGATCATCACCCA+AGG | + | chr2_2:18373014-18373033 | None:intergenic | 50.0% |
| TGATCCCGAGGACTGTCCAT+CGG | - | chr2_2:18373276-18373295 | Msa0242280:intron | 55.0% | |
| ACAGTCCGATGGACAGTCCT+CGG | + | chr2_2:18373284-18373303 | None:intergenic | 55.0% | |
| CAGTCCGATGGACAGTCCTC+GGG | + | chr2_2:18373283-18373302 | None:intergenic | 60.0% | |
| ! | CAAGGGCGTGAACAGTCCGA+TGG | + | chr2_2:18373295-18373314 | None:intergenic | 60.0% |
| !! | AACGGTACGGAGCGCTGCTA+TGG | - | chr2_2:18373523-18373542 | Msa0242280:CDS | 60.0% |
| !! | ACGGAGCGCTGCTATGGCTG+TGG | - | chr2_2:18373529-18373548 | Msa0242280:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 18372900 | 18373586 | 18372900 | ID=Msa0242280;Name=Msa0242280 |
| chr2_2 | mRNA | 18372900 | 18373586 | 18372900 | ID=Msa0242280-mRNA-1;Parent=Msa0242280;Name=Msa0242280-mRNA-1;_AED=0.44;_eAED=0.56;_QI=0|0|0|1|1|1|3|0|124 |
| chr2_2 | exon | 18373421 | 18373586 | 18373421 | ID=Msa0242280-mRNA-1:exon:7537;Parent=Msa0242280-mRNA-1 |
| chr2_2 | exon | 18373081 | 18373214 | 18373081 | ID=Msa0242280-mRNA-1:exon:7536;Parent=Msa0242280-mRNA-1 |
| chr2_2 | exon | 18372900 | 18372974 | 18372900 | ID=Msa0242280-mRNA-1:exon:7535;Parent=Msa0242280-mRNA-1 |
| chr2_2 | CDS | 18373421 | 18373586 | 18373421 | ID=Msa0242280-mRNA-1:cds;Parent=Msa0242280-mRNA-1 |
| chr2_2 | CDS | 18373081 | 18373214 | 18373081 | ID=Msa0242280-mRNA-1:cds;Parent=Msa0242280-mRNA-1 |
| chr2_2 | CDS | 18372900 | 18372974 | 18372900 | ID=Msa0242280-mRNA-1:cds;Parent=Msa0242280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
