AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0551520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0551520 MtrunA17_Chr4g0037681 97.309 223 6 0 9 231 1 223 8.38e-167 459
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0551520 AT3G19900.1 58.590 227 84 4 9 231 2 222 6.58e-80 239
Msa0551520 AT3G19900.2 45.342 161 78 4 9 165 2 156 2.53e-31 113

Find 99 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAAACTTCTCTTCAAATT+AGG 0.085912 4_1:-47512936 Msa0551520:three_prime_UTR
TCAAGGAAGTATTAAATATT+TGG 0.129023 4_1:+47515781 None:intergenic
TTACAGTAGTGGTGTAAATT+TGG 0.222566 4_1:-47512993 Msa0551520:three_prime_UTR
ATAAACTTCTCTTCAAATTA+GGG 0.228810 4_1:-47512935 Msa0551520:three_prime_UTR
ACTCTTATCAGGAACAAATA+TGG 0.244535 4_1:-47514110 Msa0551520:CDS
TCGACCTTGCTACTCTTATC+AGG 0.299634 4_1:-47514121 Msa0551520:CDS
ATTTATGATGAGCAACATTA+AGG 0.300170 4_1:+47515281 None:intergenic
GATTTATTATACGTTTATAC+TGG 0.325770 4_1:-47513114 Msa0551520:three_prime_UTR
GTCATTATCATCTGAATCAT+AGG 0.330530 4_1:+47515195 None:intergenic
TTGACCATCGGATTTCATTC+AGG 0.333736 4_1:-47515904 Msa0551520:five_prime_UTR
CAGTACAGTGAGTGACAATA+TGG 0.345555 4_1:-47515221 Msa0551520:CDS
TGCAAACTCGTTAAAATGTT+GGG 0.348396 4_1:-47513536 Msa0551520:CDS
TGACAAAGGAAGTATTAATA+AGG 0.350939 4_1:-47515347 Msa0551520:CDS
TTATTAATACTTCCTTTGTC+AGG 0.354603 4_1:+47515349 None:intergenic
ACTAGGCACGTATGATTATA+AGG 0.356021 4_1:+47512759 None:intergenic
TGTAAACAAACAGAAGAAAT+AGG 0.375195 4_1:+47513011 None:intergenic
AACTAACCTTCTTAATCAAC+TGG 0.375297 4_1:+47514072 None:intergenic
ATTAAGGAAGTCTAATCCTT+TGG 0.378502 4_1:+47515297 None:intergenic
TGGTTGGATGGAAAACTATA+TGG 0.379664 4_1:-47512799 Msa0551520:three_prime_UTR
TGATTTATGCTAGGAATTCA+TGG 0.380626 4_1:-47513882 Msa0551520:intron
TGGTTGGCCTCTAAGAATTC+AGG 0.385634 4_1:-47515377 Msa0551520:CDS
ATTTCAATAGAAATGTTAGA+AGG 0.387794 4_1:+47513069 None:intergenic
AATGGTCTGTTTGGCCTATC+CGG 0.399297 4_1:-47516038 Msa0551520:five_prime_UTR
TTGACAGCTGACTGTGTAAC+TGG 0.406487 4_1:-47512819 Msa0551520:three_prime_UTR
AGCCGATGAGTCAGAACTAA+TGG 0.414176 4_1:+47515838 None:intergenic
TTGCAAACTCGTTAAAATGT+TGG 0.414396 4_1:-47513537 Msa0551520:CDS
TTTCTATTGAAATCACTTCA+AGG 0.415900 4_1:-47513059 Msa0551520:three_prime_UTR
GGGGAGCTGTGTCACATATT+CGG 0.416518 4_1:-47513516 Msa0551520:CDS
CTTCTGTTTGTTTACAGTAG+TGG 0.417837 4_1:-47513004 Msa0551520:three_prime_UTR
CTCTTATCAGGAACAAATAT+GGG 0.420619 4_1:-47514109 Msa0551520:CDS
TATTTGGATTCCATGCAGTT+AGG 0.429981 4_1:+47515797 None:intergenic
TTTATAGATATGGACGAGTC+TGG 0.430032 4_1:-47513249 Msa0551520:CDS
CATTGTGTTACCCTATTACT+CGG 0.430473 4_1:-47512899 Msa0551520:three_prime_UTR
GGTCAAATATTGATCGAAAT+CGG 0.440833 4_1:+47515921 None:intergenic
CATGCAGTCAAGTGTATTAG+AGG 0.442818 4_1:+47515878 None:intergenic
CATATTGTCACTCACTGTAC+TGG 0.450902 4_1:+47515222 None:intergenic
TGATGTCCAGTTGATTAAGA+AGG 0.453415 4_1:-47514078 Msa0551520:intron
ACAGATGATTCAAGGTTTAG+TGG 0.456616 4_1:-47514146 Msa0551520:CDS
CGAAAGAACGACCTCGGATA+GGG 0.464263 4_1:-47513477 Msa0551520:CDS
GTCGTTCTTTCGACTTTGCT+AGG 0.484164 4_1:+47513488 None:intergenic
GGGTGATCCTGAATTCTTAG+AGG 0.485445 4_1:+47515370 None:intergenic
TCGAAAGAACGACCTCGGAT+AGG 0.487536 4_1:-47513478 Msa0551520:CDS
AATATATTCTTCTTCAGTCA+AGG 0.492732 4_1:+47513576 None:intergenic
TTCGATCAATATTTGACCAT+CGG 0.495569 4_1:-47515916 Msa0551520:five_prime_UTR
TTCTTGCAGTCGAGGTCAGT+TGG 0.497157 4_1:-47516013 Msa0551520:five_prime_UTR
AAGGAAGTCTAATCCTTTGG+AGG 0.499539 4_1:+47515300 None:intergenic
TAGTCGGTACAGATGATTCA+AGG 0.503976 4_1:-47514154 Msa0551520:CDS
TGAGTCAGAACTAATGGACT+TGG 0.506248 4_1:+47515844 None:intergenic
AATTGGGGATTTGAAAAGTA+GGG 0.508123 4_1:+47515750 None:intergenic
AAATTGGGGATTTGAAAAGT+AGG 0.511386 4_1:+47515749 None:intergenic
GACCTCGACTGCAAGAAATC+CGG 0.511691 4_1:+47516019 None:intergenic
ATATATTCTTCTTCAGTCAA+GGG 0.512865 4_1:+47513577 None:intergenic
TCATTATCATCTGAATCATA+GGG 0.525942 4_1:+47515196 None:intergenic
TATTAATACTTCCTTTGTCA+GGG 0.527073 4_1:+47515350 None:intergenic
ATTGATCGAAATCGGATGGA+TGG 0.529820 4_1:+47515929 None:intergenic
GTCCATTAGTTCTGACTCAT+CGG 0.531271 4_1:-47515840 Msa0551520:five_prime_UTR
ATGATCAGGTGAATAGTGAC+AGG 0.536819 4_1:-47514199 Msa0551520:CDS
GTTCATGTTTATACTTGCAA+AGG 0.541555 4_1:+47512843 None:intergenic
ATCCGGATTTCTTGCAGTCG+AGG 0.544427 4_1:-47516021 Msa0551520:five_prime_UTR
TGTCCACCCACCAGTGTGGT+TGG 0.544450 4_1:-47515393 Msa0551520:CDS
GATTTATGCTAGGAATTCAT+GGG 0.546117 4_1:-47513881 Msa0551520:intron
ACAAACAGAAGAAATAGGTC+AGG 0.549016 4_1:+47513016 None:intergenic
CAGAATAATGATGAAATCAA+AGG 0.553196 4_1:-47515160 Msa0551520:CDS
TGAACTGAAATTCATCTCAA+AGG 0.554787 4_1:-47513185 Msa0551520:three_prime_UTR
ATTGTGTTACCCTATTACTC+GGG 0.556319 4_1:-47512898 Msa0551520:three_prime_UTR
AAATATTGATCGAAATCGGA+TGG 0.558606 4_1:+47515925 None:intergenic
AAAATTCAGTTACAAAAGTG+AGG 0.560338 4_1:-47515575 Msa0551520:five_prime_UTR
GAATGTCATGTGGAAGTACA+TGG 0.561058 4_1:-47513840 Msa0551520:CDS
GGATATCATTCTCCCTCCAA+AGG 0.564889 4_1:-47515313 Msa0551520:CDS
AAAGTAGGGAATGAATATCA+AGG 0.565040 4_1:+47515764 None:intergenic
CAGCTGACTGTGTAACTGGT+TGG 0.565799 4_1:-47512815 Msa0551520:three_prime_UTR
AGTTTATTAGAAATTTAATG+TGG 0.571613 4_1:+47512951 None:intergenic
GGCATAGTCAGTGGGCAACT+AGG 0.573789 4_1:+47512742 None:intergenic
TAAACTTCTCTTCAAATTAG+GGG 0.579908 4_1:-47512934 Msa0551520:three_prime_UTR
GAAATACAATCTTGTGCGTG+TGG 0.580288 4_1:+47515717 None:intergenic
GCAAACTCGTTAAAATGTTG+GGG 0.580293 4_1:-47513535 Msa0551520:CDS
CATGTGGAAGTACATGGAGC+AGG 0.580471 4_1:-47513834 Msa0551520:intron
TTCTTAGAGGCCAACCACAC+TGG 0.581947 4_1:+47515383 None:intergenic
TATATTCTTCTTCAGTCAAG+GGG 0.582965 4_1:+47513578 None:intergenic
AGGAAGTCTAATCCTTTGGA+GGG 0.584257 4_1:+47515301 None:intergenic
TTAAAAGTAGTTGTATGACA+TGG 0.590810 4_1:+47515596 None:intergenic
TGACTGTGTAACTGGTTGGA+TGG 0.609585 4_1:-47512811 Msa0551520:three_prime_UTR
AGTTGTATGACATGGTAACA+AGG 0.612239 4_1:+47515604 None:intergenic
TCCACATGACATTCATAGCA+AGG 0.612755 4_1:+47513849 None:intergenic
GAAAGTCTCGAGAAAATAGT+CGG 0.613761 4_1:-47514170 Msa0551520:CDS
CTGGTGCACGTGCAAACGAG+TGG 0.616172 4_1:-47513230 Msa0551520:CDS
TTAGAGGCCAACCACACTGG+TGG 0.619099 4_1:+47515386 None:intergenic
ATTCAGGATCACCCTGACAA+AGG 0.623380 4_1:-47515361 Msa0551520:CDS
GTCGCCTGAATGAAATCCGA+TGG 0.627759 4_1:+47515900 None:intergenic
TGTTCCTGATAAGAGTAGCA+AGG 0.634017 4_1:+47514117 None:intergenic
CGACTGCAAGAAATCCGGAT+AGG 0.634813 4_1:+47516024 None:intergenic
AGGCCAACCACACTGGTGGG+TGG 0.635187 4_1:+47515390 None:intergenic
ACTGAAATTCATCTCAAAGG+TGG 0.636102 4_1:-47513182 Msa0551520:three_prime_UTR
TAGAGGCCAACCACACTGGT+GGG 0.636716 4_1:+47515387 None:intergenic
AGAACGACCTCGGATAGGGA+AGG 0.655521 4_1:-47513473 Msa0551520:intron
CAAAGTCGAAAGAACGACCT+CGG 0.659433 4_1:-47513483 Msa0551520:CDS
TCCTTGCTATGAATGTCATG+TGG 0.672616 4_1:-47513850 Msa0551520:CDS
AAGGTGGTGTCTATAGTCAG+CGG 0.691680 4_1:-47513166 Msa0551520:three_prime_UTR
ATTATGTCCACCCACCAGTG+TGG 0.725293 4_1:-47515397 Msa0551520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAAGAGAAATATGTAA+AGG + chr4_1:47514262-47514281 None:intergenic 15.0%
!! ATATCATATGTAAATAGATT+AGG - chr4_1:47515370-47515389 Msa0551520:CDS 15.0%
!! AGTTTATTAGAAATTTAATG+TGG + chr4_1:47515849-47515868 None:intergenic 15.0%
!!! TCAAGGAAGTATTAAATATT+TGG + chr4_1:47513019-47513038 None:intergenic 20.0%
!!! ATTCTTGATTTTTGTTACAA+AGG - chr4_1:47513748-47513767 Msa0551520:intron 20.0%
!! TAGAAATTCTTTGTAAGAAA+TGG - chr4_1:47513852-47513871 Msa0551520:CDS 20.0%
!!! TTCTACTTTTAATTGTTCAT+AGG - chr4_1:47513880-47513899 Msa0551520:intron 20.0%
!!! TCTAAGATACAACATAAAAA+AGG - chr4_1:47514074-47514093 Msa0551520:intron 20.0%
!!! AATACATATTATTTCTTCAC+TGG - chr4_1:47514142-47514161 Msa0551520:CDS 20.0%
!! TTTACCAAAACATATGATTA+AGG + chr4_1:47514443-47514462 None:intergenic 20.0%
!!! TCTTTTTTAGAAAAATGATC+AGG - chr4_1:47514584-47514603 Msa0551520:intron 20.0%
!!! CTTACAACTTTTATTTTCTA+TGG - chr4_1:47515002-47515021 Msa0551520:intron 20.0%
!! ACATAATCATTAAATGCTTA+TGG - chr4_1:47515128-47515147 Msa0551520:intron 20.0%
!! GATTTATTATACGTTTATAC+TGG - chr4_1:47515683-47515702 Msa0551520:five_prime_UTR 20.0%
!! ATTTCAATAGAAATGTTAGA+AGG + chr4_1:47515731-47515750 None:intergenic 20.0%
!! AATAAACTTCTCTTCAAATT+AGG - chr4_1:47515861-47515880 Msa0551520:five_prime_UTR 20.0%
!! ATAAACTTCTCTTCAAATTA+GGG - chr4_1:47515862-47515881 Msa0551520:five_prime_UTR 20.0%
! TGTGGATAAAAAACAAATTG+GGG + chr4_1:47513065-47513084 None:intergenic 25.0%
! GTGTGGATAAAAAACAAATT+GGG + chr4_1:47513066-47513085 None:intergenic 25.0%
! TTAAAAGTAGTTGTATGACA+TGG + chr4_1:47513204-47513223 None:intergenic 25.0%
! AAAATTCAGTTACAAAAGTG+AGG - chr4_1:47513222-47513241 Msa0551520:CDS 25.0%
! AAAAACCAGATAGAGAAAAT+CGG + chr4_1:47513310-47513329 None:intergenic 25.0%
! TATTAATACTTCCTTTGTCA+GGG + chr4_1:47513450-47513469 None:intergenic 25.0%
! TTATTAATACTTCCTTTGTC+AGG + chr4_1:47513451-47513470 None:intergenic 25.0%
!!! TGACAAAGGAAGTATTAATA+AGG - chr4_1:47513450-47513469 Msa0551520:intron 25.0%
!! ATTAATAAGGCTCAATTTTC+AGG - chr4_1:47513463-47513482 Msa0551520:intron 25.0%
! ATTTATGATGAGCAACATTA+AGG + chr4_1:47513519-47513538 None:intergenic 25.0%
!! AAAAATAGGTCTACATTTTC+TGG + chr4_1:47513554-47513573 None:intergenic 25.0%
! TCATTATCATCTGAATCATA+GGG + chr4_1:47513604-47513623 None:intergenic 25.0%
! CAGAATAATGATGAAATCAA+AGG - chr4_1:47513637-47513656 Msa0551520:intron 25.0%
! AGAAATGCTAGAATAATATG+CGG - chr4_1:47513780-47513799 Msa0551520:intron 25.0%
! CCAAAATTACATCTAATGTA+GGG + chr4_1:47513990-47514009 None:intergenic 25.0%
! GTTGGATGATAAAATATGTT+TGG + chr4_1:47514112-47514131 None:intergenic 25.0%
!! TATGTATTGACATTTGTAGT+TGG + chr4_1:47514130-47514149 None:intergenic 25.0%
! AATGTTAACAGATCTTTAGA+TGG - chr4_1:47514166-47514185 Msa0551520:CDS 25.0%
! TGTTTCAATCTATCAAAACT+AGG + chr4_1:47514325-47514344 None:intergenic 25.0%
! AACTAAAAACAAGAAGATAG+AGG + chr4_1:47514373-47514392 None:intergenic 25.0%
! ATATTTGAGCAAAATCTATC+TGG - chr4_1:47514414-47514433 Msa0551520:intron 25.0%
! AAAGAAAAAAGAAGAAAAGC+CGG + chr4_1:47514564-47514583 None:intergenic 25.0%
! AAGGTAAATATAAGAAATGC+AGG + chr4_1:47514796-47514815 None:intergenic 25.0%
! AATCATGTAACAGCAAAATA+AGG + chr4_1:47514900-47514919 None:intergenic 25.0%
! AGACATCAAGATAAAAACAA+AGG - chr4_1:47515073-47515092 Msa0551520:intron 25.0%
! GACATCAAGATAAAAACAAA+GGG - chr4_1:47515074-47515093 Msa0551520:intron 25.0%
! TTATACAAGTATTTCCATAG+TGG + chr4_1:47515156-47515175 None:intergenic 25.0%
! ATATATTCTTCTTCAGTCAA+GGG + chr4_1:47515223-47515242 None:intergenic 25.0%
! AATATATTCTTCTTCAGTCA+AGG + chr4_1:47515224-47515243 None:intergenic 25.0%
!! CTGAAGAAGAATATATTTTG+AGG - chr4_1:47515227-47515246 Msa0551520:CDS 25.0%
! CAAATAACAAGAAGTTTGAA+GGG + chr4_1:47515510-47515529 None:intergenic 25.0%
! CATATCTATAAAAATGCTCA+CGG + chr4_1:47515540-47515559 None:intergenic 25.0%
! TTTCTATTGAAATCACTTCA+AGG - chr4_1:47515738-47515757 Msa0551520:five_prime_UTR 25.0%
! TGTAAACAAACAGAAGAAAT+AGG + chr4_1:47515789-47515808 None:intergenic 25.0%
! TAAACTTCTCTTCAAATTAG+GGG - chr4_1:47515863-47515882 Msa0551520:five_prime_UTR 25.0%
CGTTGAATGAAAAACAGAAA+TGG - chr4_1:47512810-47512829 Msa0551520:three_prime_UTR 30.0%
AAATATTGATCGAAATCGGA+TGG + chr4_1:47512875-47512894 None:intergenic 30.0%
GGTCAAATATTGATCGAAAT+CGG + chr4_1:47512879-47512898 None:intergenic 30.0%
TTCGATCAATATTTGACCAT+CGG - chr4_1:47512881-47512900 Msa0551520:three_prime_UTR 30.0%
AAAGTAGGGAATGAATATCA+AGG + chr4_1:47513036-47513055 None:intergenic 30.0%
AATTGGGGATTTGAAAAGTA+GGG + chr4_1:47513050-47513069 None:intergenic 30.0%
AAATTGGGGATTTGAAAAGT+AGG + chr4_1:47513051-47513070 None:intergenic 30.0%
CGTGTGGATAAAAAACAAAT+TGG + chr4_1:47513067-47513086 None:intergenic 30.0%
!!! TTTTTTATGAAACTGAGTGC+AGG - chr4_1:47513364-47513383 Msa0551520:intron 30.0%
ATTAAGGAAGTCTAATCCTT+TGG + chr4_1:47513503-47513522 None:intergenic 30.0%
GTCATTATCATCTGAATCAT+AGG + chr4_1:47513605-47513624 None:intergenic 30.0%
! CCCTACATTAGATGTAATTT+TGG - chr4_1:47513987-47514006 Msa0551520:intron 30.0%
GCCAAAATTACATCTAATGT+AGG + chr4_1:47513991-47514010 None:intergenic 30.0%
CACCACTTATAATTGTCTTT+CGG + chr4_1:47514013-47514032 None:intergenic 30.0%
! GCTTCCTTAATCATATGTTT+TGG - chr4_1:47514436-47514455 Msa0551520:intron 30.0%
! ATGTTGAAGCTCTTTTCAAA+TGG - chr4_1:47514472-47514491 Msa0551520:intron 30.0%
! CTCTTTTCAAATGGAAATAC+AGG - chr4_1:47514481-47514500 Msa0551520:intron 30.0%
ACTCTTATCAGGAACAAATA+TGG - chr4_1:47514687-47514706 Msa0551520:intron 30.0%
CTCTTATCAGGAACAAATAT+GGG - chr4_1:47514688-47514707 Msa0551520:intron 30.0%
AACTAACCTTCTTAATCAAC+TGG + chr4_1:47514728-47514747 None:intergenic 30.0%
AGAGAGAGATATTGAAAAGA+AGG + chr4_1:47514815-47514834 None:intergenic 30.0%
TGATTTATGCTAGGAATTCA+TGG - chr4_1:47514915-47514934 Msa0551520:intron 30.0%
GATTTATGCTAGGAATTCAT+GGG - chr4_1:47514916-47514935 Msa0551520:intron 30.0%
TATATTCTTCTTCAGTCAAG+GGG + chr4_1:47515222-47515241 None:intergenic 30.0%
TTGCAAACTCGTTAAAATGT+TGG - chr4_1:47515260-47515279 Msa0551520:CDS 30.0%
TGCAAACTCGTTAAAATGTT+GGG - chr4_1:47515261-47515280 Msa0551520:CDS 30.0%
! TTGTAAACTTTTGCTGATGT+TGG + chr4_1:47515424-47515443 None:intergenic 30.0%
CCAAATAACAAGAAGTTTGA+AGG + chr4_1:47515511-47515530 None:intergenic 30.0%
!! CCTTCAAACTTCTTGTTATT+TGG - chr4_1:47515508-47515527 Msa0551520:five_prime_UTR 30.0%
! CGTGAGCATTTTTATAGATA+TGG - chr4_1:47515538-47515557 Msa0551520:five_prime_UTR 30.0%
TGAACTGAAATTCATCTCAA+AGG - chr4_1:47515612-47515631 Msa0551520:five_prime_UTR 30.0%
TTACAGTAGTGGTGTAAATT+TGG - chr4_1:47515804-47515823 Msa0551520:five_prime_UTR 30.0%
GTTCATGTTTATACTTGCAA+AGG + chr4_1:47515957-47515976 None:intergenic 30.0%
TATTTGGATTCCATGCAGTT+AGG + chr4_1:47513003-47513022 None:intergenic 35.0%
AGTTGTATGACATGGTAACA+AGG + chr4_1:47513196-47513215 None:intergenic 35.0%
CTCACTGTACTGGAAAAAAT+AGG + chr4_1:47513568-47513587 None:intergenic 35.0%
TACATGCAGTCATGCAAAAA+GGG + chr4_1:47513684-47513703 None:intergenic 35.0%
TTACATGCAGTCATGCAAAA+AGG + chr4_1:47513685-47513704 None:intergenic 35.0%
ATGCTAGAATAATATGCGGT+AGG - chr4_1:47513784-47513803 Msa0551520:intron 35.0%
! AATTGTTCATAGGAGTGTGT+CGG - chr4_1:47513890-47513909 Msa0551520:intron 35.0%
CGAAAGACAATTATAAGTGG+TGG - chr4_1:47514011-47514030 Msa0551520:intron 35.0%
AACTTCCTACAAATCTGACT+TGG + chr4_1:47514055-47514074 None:intergenic 35.0%
AGATCTTTAGATGGTGAACT+AGG - chr4_1:47514175-47514194 Msa0551520:CDS 35.0%
GAAAGTCTCGAGAAAATAGT+CGG - chr4_1:47514627-47514646 Msa0551520:intron 35.0%
ACAGATGATTCAAGGTTTAG+TGG - chr4_1:47514651-47514670 Msa0551520:intron 35.0%
TGATGTCCAGTTGATTAAGA+AGG - chr4_1:47514719-47514738 Msa0551520:intron 35.0%
!! GAAGGTTAGTTTCTTACAAG+TGG - chr4_1:47514737-47514756 Msa0551520:intron 35.0%
GCTGTTACATGATTTATGCT+AGG - chr4_1:47514906-47514925 Msa0551520:intron 35.0%
AAATGCTTATGGTACCACTA+TGG - chr4_1:47515139-47515158 Msa0551520:intron 35.0%
GCAAACTCGTTAAAATGTTG+GGG - chr4_1:47515262-47515281 Msa0551520:CDS 35.0%
AGGACACCTTCATACAATAT+TGG - chr4_1:47515390-47515409 Msa0551520:CDS 35.0%
ACACCTTCATACAATATTGG+CGG - chr4_1:47515393-47515412 Msa0551520:CDS 35.0%
ATTCCGCCAATATTGTATGA+AGG + chr4_1:47515399-47515418 None:intergenic 35.0%
!! AACTTCTTGTTATTTGGTGC+AGG - chr4_1:47515514-47515533 Msa0551520:five_prime_UTR 35.0%
TTTATAGATATGGACGAGTC+TGG - chr4_1:47515548-47515567 Msa0551520:five_prime_UTR 35.0%
ACTGAAATTCATCTCAAAGG+TGG - chr4_1:47515615-47515634 Msa0551520:five_prime_UTR 35.0%
CCAAGAAGTTCCCAAAAAAA+GGG + chr4_1:47515662-47515681 None:intergenic 35.0%
!!! CCTTTTTTTGGGAACTTCTT+GGG - chr4_1:47515660-47515679 Msa0551520:five_prime_UTR 35.0%
!!! CTTTTTTTGGGAACTTCTTG+GGG - chr4_1:47515661-47515680 Msa0551520:five_prime_UTR 35.0%
ACAAACAGAAGAAATAGGTC+AGG + chr4_1:47515784-47515803 None:intergenic 35.0%
CTTCTGTTTGTTTACAGTAG+TGG - chr4_1:47515793-47515812 Msa0551520:five_prime_UTR 35.0%
CATTGTGTTACCCTATTACT+CGG - chr4_1:47515898-47515917 Msa0551520:five_prime_UTR 35.0%
ATTGTGTTACCCTATTACTC+GGG - chr4_1:47515899-47515918 Msa0551520:five_prime_UTR 35.0%
! AGTGATTTTCCCGAGTAATA+GGG + chr4_1:47515911-47515930 None:intergenic 35.0%
! AAGTGATTTTCCCGAGTAAT+AGG + chr4_1:47515912-47515931 None:intergenic 35.0%
TGGTTGGATGGAAAACTATA+TGG - chr4_1:47515998-47516017 Msa0551520:five_prime_UTR 35.0%
ACTAGGCACGTATGATTATA+AGG + chr4_1:47516041-47516060 None:intergenic 35.0%
ATTGATCGAAATCGGATGGA+TGG + chr4_1:47512871-47512890 None:intergenic 40.0%
TTGACCATCGGATTTCATTC+AGG - chr4_1:47512893-47512912 Msa0551520:three_prime_UTR 40.0%
CATGCAGTCAAGTGTATTAG+AGG + chr4_1:47512922-47512941 None:intergenic 40.0%
!! TGAGTCAGAACTAATGGACT+TGG + chr4_1:47512956-47512975 None:intergenic 40.0%
!! GTCCATTAGTTCTGACTCAT+CGG - chr4_1:47512957-47512976 Msa0551520:three_prime_UTR 40.0%
GAAATACAATCTTGTGCGTG+TGG + chr4_1:47513083-47513102 None:intergenic 40.0%
! CATGTCCGATTTTCTCTATC+TGG - chr4_1:47513302-47513321 Msa0551520:intron 40.0%
AGGAAGTCTAATCCTTTGGA+GGG + chr4_1:47513499-47513518 None:intergenic 40.0%
AAGGAAGTCTAATCCTTTGG+AGG + chr4_1:47513500-47513519 None:intergenic 40.0%
!! GTCTACATTTTCTGGCAGTA+TGG + chr4_1:47513546-47513565 None:intergenic 40.0%
CATATTGTCACTCACTGTAC+TGG + chr4_1:47513578-47513597 None:intergenic 40.0%
CAGTACAGTGAGTGACAATA+TGG - chr4_1:47513576-47513595 Msa0551520:CDS 40.0%
GGCCGAAAGACAATTATAAG+TGG - chr4_1:47514008-47514027 Msa0551520:intron 40.0%
ACGTTCCAAGTCAGATTTGT+AGG - chr4_1:47514047-47514066 Msa0551520:intron 40.0%
TTCTTCCTCCTATGATGAAC+CGG - chr4_1:47514286-47514305 Msa0551520:intron 40.0%
ACTAGGATTTCACATCCAAC+CGG + chr4_1:47514308-47514327 None:intergenic 40.0%
ATGATCAGGTGAATAGTGAC+AGG - chr4_1:47514598-47514617 Msa0551520:intron 40.0%
TAGTCGGTACAGATGATTCA+AGG - chr4_1:47514643-47514662 Msa0551520:intron 40.0%
TGTTCCTGATAAGAGTAGCA+AGG + chr4_1:47514683-47514702 None:intergenic 40.0%
GCAGAACTTAACACATCGTT+TGG + chr4_1:47514872-47514891 None:intergenic 40.0%
! TCCTTGCTATGAATGTCATG+TGG - chr4_1:47514947-47514966 Msa0551520:intron 40.0%
TCCACATGACATTCATAGCA+AGG + chr4_1:47514951-47514970 None:intergenic 40.0%
! GAATGTCATGTGGAAGTACA+TGG - chr4_1:47514957-47514976 Msa0551520:intron 40.0%
! AATTTTACCTTCCCTATCCG+AGG + chr4_1:47515334-47515353 None:intergenic 40.0%
AGAAGTTCCCAAAAAAAGGG+TGG + chr4_1:47515659-47515678 None:intergenic 40.0%
!!! CCCTTTTTTTGGGAACTTCT+TGG - chr4_1:47515659-47515678 Msa0551520:five_prime_UTR 40.0%
CCCAAGAAGTTCCCAAAAAA+AGG + chr4_1:47515663-47515682 None:intergenic 40.0%
AATGGTCTGTTTGGCCTATC+CGG - chr4_1:47512759-47512778 Msa0551520:three_prime_UTR 45.0%
AGCCGATGAGTCAGAACTAA+TGG + chr4_1:47512962-47512981 None:intergenic 45.0%
! GCGTGATTTTCCTAACTGCA+TGG - chr4_1:47512990-47513009 Msa0551520:three_prime_UTR 45.0%
!! TGGTTGGCCTCTAAGAATTC+AGG - chr4_1:47513420-47513439 Msa0551520:intron 45.0%
GGGTGATCCTGAATTCTTAG+AGG + chr4_1:47513430-47513449 None:intergenic 45.0%
ATTCAGGATCACCCTGACAA+AGG - chr4_1:47513436-47513455 Msa0551520:intron 45.0%
GGATATCATTCTCCCTCCAA+AGG - chr4_1:47513484-47513503 Msa0551520:CDS 45.0%
! GTGTCGGCAGGTTTATATCT+AGG - chr4_1:47513906-47513925 Msa0551520:intron 45.0%
!! CTGACTTGGAACGTAAGATG+AGG + chr4_1:47514041-47514060 None:intergenic 45.0%
! ACATCCAACCGGTTCATCAT+AGG + chr4_1:47514297-47514316 None:intergenic 45.0%
! CGGATTGAGAGCACATCAAT+GGG + chr4_1:47514544-47514563 None:intergenic 45.0%
CCATTGATGTGCTCTCAATC+CGG - chr4_1:47514542-47514561 Msa0551520:intron 45.0%
TCGACCTTGCTACTCTTATC+AGG - chr4_1:47514676-47514695 Msa0551520:intron 45.0%
GTCGTTCTTTCGACTTTGCT+AGG + chr4_1:47515312-47515331 None:intergenic 45.0%
CAAAGTCGAAAGAACGACCT+CGG - chr4_1:47515314-47515333 Msa0551520:CDS 45.0%
AAGGTGGTGTCTATAGTCAG+CGG - chr4_1:47515631-47515650 Msa0551520:five_prime_UTR 45.0%
TTGACAGCTGACTGTGTAAC+TGG - chr4_1:47515978-47515997 Msa0551520:five_prime_UTR 45.0%
TGACTGTGTAACTGGTTGGA+TGG - chr4_1:47515986-47516005 Msa0551520:five_prime_UTR 45.0%
CGACTGCAAGAAATCCGGAT+AGG + chr4_1:47512776-47512795 None:intergenic 50.0%
ATCCGGATTTCTTGCAGTCG+AGG - chr4_1:47512776-47512795 Msa0551520:three_prime_UTR 50.0%
GACCTCGACTGCAAGAAATC+CGG + chr4_1:47512781-47512800 None:intergenic 50.0%
TTCTTGCAGTCGAGGTCAGT+TGG - chr4_1:47512784-47512803 Msa0551520:three_prime_UTR 50.0%
GTCGCCTGAATGAAATCCGA+TGG + chr4_1:47512900-47512919 None:intergenic 50.0%
ATTATGTCCACCCACCAGTG+TGG - chr4_1:47513400-47513419 Msa0551520:intron 50.0%
TTCTTAGAGGCCAACCACAC+TGG + chr4_1:47513417-47513436 None:intergenic 50.0%
TCCTCCTATGATGAACCGGT+TGG - chr4_1:47514290-47514309 Msa0551520:intron 50.0%
! TCCAACCGGTTCATCATAGG+AGG + chr4_1:47514294-47514313 None:intergenic 50.0%
! CCGGATTGAGAGCACATCAA+TGG + chr4_1:47514545-47514564 None:intergenic 50.0%
! CATGTGGAAGTACATGGAGC+AGG - chr4_1:47514963-47514982 Msa0551520:intron 50.0%
GGGGAGCTGTGTCACATATT+CGG - chr4_1:47515281-47515300 Msa0551520:CDS 50.0%
TCGAAAGAACGACCTCGGAT+AGG - chr4_1:47515319-47515338 Msa0551520:CDS 50.0%
CGAAAGAACGACCTCGGATA+GGG - chr4_1:47515320-47515339 Msa0551520:CDS 50.0%
CAGCTGACTGTGTAACTGGT+TGG - chr4_1:47515982-47516001 Msa0551520:five_prime_UTR 50.0%
TAGAGGCCAACCACACTGGT+GGG + chr4_1:47513413-47513432 None:intergenic 55.0%
TTAGAGGCCAACCACACTGG+TGG + chr4_1:47513414-47513433 None:intergenic 55.0%
! GTTCATAGGAGTGTGTCGGC+AGG - chr4_1:47513894-47513913 Msa0551520:intron 55.0%
AGAACGACCTCGGATAGGGA+AGG - chr4_1:47515324-47515343 Msa0551520:CDS 55.0%
!!! AGCGGCGCCACCCTTTTTTT+GGG - chr4_1:47515649-47515668 Msa0551520:five_prime_UTR 55.0%
TGTCCACCCACCAGTGTGGT+TGG - chr4_1:47513404-47513423 Msa0551520:intron 60.0%
CTGGTGCACGTGCAAACGAG+TGG - chr4_1:47515567-47515586 Msa0551520:five_prime_UTR 60.0%
!!! CAGCGGCGCCACCCTTTTTT+TGG - chr4_1:47515648-47515667 Msa0551520:five_prime_UTR 60.0%
AGGCCAACCACACTGGTGGG+TGG + chr4_1:47513410-47513429 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 47512754 47516065 47512754 ID=Msa0551520;Name=Msa0551520
chr4_1 mRNA 47512754 47516065 47512754 ID=Msa0551520-mRNA-1;Parent=Msa0551520;Name=Msa0551520-mRNA-1;_AED=0.13;_eAED=0.13;_QI=616|1|1|1|1|1|5|464|231
chr4_1 exon 47512754 47513283 47512754 ID=Msa0551520-mRNA-1:exon:12954;Parent=Msa0551520-mRNA-1
chr4_1 exon 47513474 47513608 47513474 ID=Msa0551520-mRNA-1:exon:12953;Parent=Msa0551520-mRNA-1
chr4_1 exon 47513835 47513891 47513835 ID=Msa0551520-mRNA-1:exon:12952;Parent=Msa0551520-mRNA-1
chr4_1 exon 47514079 47514225 47514079 ID=Msa0551520-mRNA-1:exon:12951;Parent=Msa0551520-mRNA-1
chr4_1 exon 47515159 47516065 47515159 ID=Msa0551520-mRNA-1:exon:12950;Parent=Msa0551520-mRNA-1
chr4_1 five_prime_UTR 47515450 47516065 47515450 ID=Msa0551520-mRNA-1:five_prime_utr;Parent=Msa0551520-mRNA-1
chr4_1 CDS 47515159 47515449 47515159 ID=Msa0551520-mRNA-1:cds;Parent=Msa0551520-mRNA-1
chr4_1 CDS 47514079 47514225 47514079 ID=Msa0551520-mRNA-1:cds;Parent=Msa0551520-mRNA-1
chr4_1 CDS 47513835 47513891 47513835 ID=Msa0551520-mRNA-1:cds;Parent=Msa0551520-mRNA-1
chr4_1 CDS 47513474 47513608 47513474 ID=Msa0551520-mRNA-1:cds;Parent=Msa0551520-mRNA-1
chr4_1 CDS 47513218 47513283 47513218 ID=Msa0551520-mRNA-1:cds;Parent=Msa0551520-mRNA-1
chr4_1 three_prime_UTR 47512754 47513217 47512754 ID=Msa0551520-mRNA-1:three_prime_utr;Parent=Msa0551520-mRNA-1
Gene Sequence

>Msa0551520

ATGAAACTGAGTGCAGGACACACAATGAACATTATGTCCACCCACCAGTGTGGTTGGCCTCTAAGAATTCAGGATCACCCTGACAAAGGAAGTATTAATAAGGCTCAATTTTCAGGATATCATTCTCCCTCCAAAGGATTAGACTTCCTTAATGTTGCTCATCATAAATGTTGCCATACTGCCAGAAAATGTAGACCTATTTTTTCCAGTACAGTGAGTGACAATATGGATCCCTATGATTCAGATGATAATGACAAGAACAAATCTCAGAATAATGATGAAATCAAAGGAAAAAATGATCAGGTGAATAGTGACAGGCTCAGAGAAAGTCTCGAGAAAATAGTCGGTACAGATGATTCAAGGTTTAGTGGATTCGACCTTGCTACTCTTATCAGGAACAAATATGGGAAATCTTATGATGTCCAGTTGATTAAGAAGGAATTCATGGGAAGAAATTTCCTTGCTATGAATGTCATGTGGAAGTACATGGAGCAGAGATCATTCCCCTTGACTGAAGAAGAATATATTTTGAGGCTCGACAATGTTGCAAACTCGTTAAAATGTTGGGGAGCTGTGTCACATATTCGGAACAGCCTAGCAAAGTCGAAAGAACGACCTCGGATAGGGAAGGCCGTGAGCATTTTTATAGATATGGACGAGTCTGGTGCACGTGCAAACGAGTGGATCTACAAGTAG

Protein sequence

>Msa0551520

MKLSAGHTMNIMSTHQCGWPLRIQDHPDKGSINKAQFSGYHSPSKGLDFLNVAHHKCCHTARKCRPIFSSTVSDNMDPYDSDDNDKNKSQNNDEIKGKNDQVNSDRLRESLEKIVGTDDSRFSGFDLATLIRNKYGKSYDVQLIKKEFMGRNFLAMNVMWKYMEQRSFPLTEEEYILRLDNVANSLKCWGAVSHIRNSLAKSKERPRIGKAVSIFIDMDESGARANEWIYK*