AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0871790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0871790 MtrunA17_Chr6g0453121 91.522 460 29 3 1 452 1 458 0.0 829
Msa0871790 MtrunA17_Chr6g0450671 47.112 329 151 7 132 451 115 429 2.33e-80 255
Msa0871790 MtrunA17_Chr2g0285791 44.206 233 110 5 130 344 88 318 1.71e-44 158
Msa0871790 MtrunA17_Chr7g0272621 27.213 305 182 11 167 452 147 430 2.24e-22 99.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0871790 AT5G39830.1 71.707 410 106 4 52 452 40 448 0.0 568
Msa0871790 AT5G39830.2 70.647 402 110 3 52 452 40 434 0.0 551
Msa0871790 AT3G27925.1 45.652 368 175 9 93 450 83 435 2.80e-80 255
Msa0871790 AT3G27925.2 45.652 368 175 9 93 450 83 435 2.80e-80 255
Msa0871790 AT4G18370.1 40.598 234 121 4 130 348 90 320 2.69e-41 150
Msa0871790 AT4G18370.2 42.697 178 94 3 130 302 90 264 1.57e-34 130
Msa0871790 AT5G27660.2 30.263 304 169 13 167 449 149 430 5.75e-27 112
Msa0871790 AT4G18370.3 40.268 149 81 3 130 273 90 235 2.88e-25 103
Msa0871790 AT5G27660.1 29.934 304 164 14 167 449 144 419 2.65e-24 105

Find 118 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGGAGCTGATCGTTTAA+AGG 0.210417 6_1:+6946137 Msa0871790:CDS
ATAGGCTTTAAAATTTCTTT+AGG 0.215386 6_1:-6946603 None:intergenic
TAACCTGTTTCCGGGATTTA+TGG 0.234561 6_1:-6946793 None:intergenic
CCCAACAAGACGCGTGTTAA+TGG 0.257254 6_1:+6944254 Msa0871790:CDS
AGCCTAGTGTAACCTGTTTC+CGG 0.267455 6_1:-6946802 None:intergenic
TATCTAGGAACATGTGATTA+AGG 0.274138 6_1:+6948890 Msa0871790:three_prime_UTR
CCATTAACACGCGTCTTGTT+GGG 0.282657 6_1:-6944254 None:intergenic
ACTCCAGAGCCATTTCCTTC+AGG 0.305935 6_1:-6945714 None:intergenic
AATCAACTTAACGTTCAAAA+TGG 0.316638 6_1:+6947807 Msa0871790:CDS
CGAGATATCTTTAGTAAAAC+TGG 0.325407 6_1:+6946735 Msa0871790:CDS
ATTCCTCTTTCTGTTCTTCA+AGG 0.325870 6_1:+6944292 Msa0871790:CDS
TAGGCTTTAAAATTTCTTTA+GGG 0.330169 6_1:-6946602 None:intergenic
CCCACTGCAAGAGGCTTTGC+TGG 0.333571 6_1:+6947983 Msa0871790:CDS
AGGAGAGTTGTTGAAGGTAT+TGG 0.338372 6_1:+6948540 Msa0871790:CDS
GTTCCTCAGTTGATTCAGTT+TGG 0.355755 6_1:+6947581 Msa0871790:CDS
TACCTTGTTGAAATGGAAAT+AGG 0.366837 6_1:-6943242 None:intergenic
GCCTAGTGTAACCTGTTTCC+GGG 0.375349 6_1:-6946801 None:intergenic
GCCATTAACACGCGTCTTGT+TGG 0.377181 6_1:-6944255 None:intergenic
AGTTGATTTGCAATCAAGTC+TGG 0.378170 6_1:-6947792 None:intergenic
AAAAGAGTACCTTGTTGAAA+TGG 0.385436 6_1:-6943249 None:intergenic
GAAAGTCGGGCAGCAATGTT+TGG 0.395952 6_1:+6946650 Msa0871790:CDS
CTCCAGAGCCATTTCCTTCA+GGG 0.397796 6_1:-6945713 None:intergenic
AAATGGCTCTGGAGTAGTTT+GGG 0.399205 6_1:+6945722 Msa0871790:CDS
AGTAAAACTGGTGTAACAAT+TGG 0.401310 6_1:+6946747 Msa0871790:CDS
GAAATGGCTCTGGAGTAGTT+TGG 0.404625 6_1:+6945721 Msa0871790:CDS
AGTAACATTGTTGATTCAAA+GGG 0.406116 6_1:+6948585 Msa0871790:CDS
TTTCAAACAGTTGGACAATT+CGG 0.406451 6_1:-6945476 None:intergenic
AAATGGAGCTCTTATTCTTA+CGG 0.410676 6_1:+6947824 Msa0871790:CDS
TGTTCTTCAAGGTACTTGTC+AGG 0.419796 6_1:+6944303 Msa0871790:CDS
CAATTTAAGGTTGTTAGAGC+TGG 0.421502 6_1:+6947750 Msa0871790:intron
CAAGATGAAAGTCAGGATTC+TGG 0.427221 6_1:+6944204 Msa0871790:CDS
TCTCAAGAAAAGAGAGATAA+GGG 0.428677 6_1:-6943035 None:intergenic
TGGCAGATCCCTGAAGGAAA+TGG 0.429755 6_1:+6945705 Msa0871790:intron
TTGGCGATTGGAAATCCATT+TGG 0.433672 6_1:+6946669 Msa0871790:CDS
AGCTGAAAGCTTACCTCTGC+AGG 0.441404 6_1:-6945067 None:intergenic
CTCTCAAGAAAAGAGAGATA+AGG 0.445562 6_1:-6943036 None:intergenic
TTGATCATACACTCACAGTT+GGG 0.447284 6_1:+6946694 Msa0871790:CDS
ATCCCTGAAGGAAATGGCTC+TGG 0.447939 6_1:+6945711 Msa0871790:CDS
CAGCCATAAATCCCGGAAAC+AGG 0.448059 6_1:+6946790 Msa0871790:CDS
CACAATAACCTTCCTTATCA+TGG 0.452909 6_1:-6944229 None:intergenic
GACGACTCTCCCACATTGAT+AGG 0.453856 6_1:-6946621 None:intergenic
GAGAAATCCAAGCTCCGGTC+AGG 0.454296 6_1:+6945979 Msa0871790:CDS
AATAGTCTTGCTGCCAAAGT+AGG 0.466843 6_1:+6947953 Msa0871790:CDS
GGCTGTTCAAGATGAAAGTC+AGG 0.470757 6_1:+6944197 Msa0871790:CDS
AAAGGATCTAGCTGTCTTGA+AGG 0.481432 6_1:+6946155 Msa0871790:CDS
GGTATTGCAGGAACTTCAGC+TGG 0.482116 6_1:+6947518 Msa0871790:CDS
AAGTAACATTGTTGATTCAA+AGG 0.487113 6_1:+6948584 Msa0871790:CDS
AGTCGTCGTCTCTGAAAGTC+GGG 0.494192 6_1:+6946637 Msa0871790:CDS
AGTGGGATTTAGTCCTACTT+TGG 0.499080 6_1:-6947966 None:intergenic
GGGCAGCAATGTTTGGCGAT+TGG 0.500043 6_1:+6946657 Msa0871790:CDS
ATGTGTTACTTTCAAACAGT+TGG 0.501790 6_1:-6945485 None:intergenic
AAATAGGTAGTTGAGGAGGA+AGG 0.502176 6_1:-6943226 None:intergenic
CTGAGGAACGATTCGACGTA+CGG 0.506262 6_1:-6947567 None:intergenic
AGGATTCTGGTACCATGATA+AGG 0.508233 6_1:+6944217 Msa0871790:CDS
AAAAGAGAGATAAGGGTAAG+TGG 0.511500 6_1:-6943028 None:intergenic
TCAAAGGGGTGATGAAAAGT+TGG 0.511629 6_1:+6948600 Msa0871790:CDS
TAAATGTACAGCACTAGCAT+TGG 0.516141 6_1:+6944982 Msa0871790:intron
AAATGTACAGCACTAGCATT+GGG 0.518650 6_1:+6944983 Msa0871790:intron
GCGAATTAATATTCTAGCCT+CGG 0.523452 6_1:+6946009 Msa0871790:CDS
TTTGATCATACACTCACAGT+TGG 0.526277 6_1:+6946693 Msa0871790:CDS
GCAACGACCTGACCGGAGCT+TGG 0.527858 6_1:-6945986 None:intergenic
AATAGGTAGTTGAGGAGGAA+GGG 0.530190 6_1:-6943225 None:intergenic
CGTCCTCAACTTAATGTGAC+TGG 0.532888 6_1:+6945540 Msa0871790:CDS
CTCTGTTCCTCAAGTACCAC+AGG 0.533162 6_1:-6948628 None:intergenic
ATTCGACGTACGGTTGAAGA+TGG 0.535780 6_1:-6947557 None:intergenic
GCTCAGAAGAAAACACAGTA+GGG 0.535815 6_1:-6945036 None:intergenic
TTTGCTGGTAATATAGTCCT+TGG 0.536354 6_1:+6947998 Msa0871790:CDS
GCAGGAACTTCAGCTGGTGT+AGG 0.547550 6_1:+6947524 Msa0871790:CDS
AGTGTATGATCAAAGCCAAA+TGG 0.547827 6_1:-6946684 None:intergenic
GTACCTTGAAGAACAGAAAG+AGG 0.548487 6_1:-6944295 None:intergenic
TAATGTGACTGGTGTGGTTG+AGG 0.550492 6_1:+6945551 Msa0871790:CDS
CTTTCGAGAAATCCAAGCTC+CGG 0.550992 6_1:+6945974 Msa0871790:CDS
CTTACCTCTGCAGGAAAGAG+TGG 0.551630 6_1:-6945058 None:intergenic
CATTAACACGCGTCTTGTTG+GGG 0.561982 6_1:-6944253 None:intergenic
ATTAATATTCTAGCCTCGGA+AGG 0.566662 6_1:+6946013 Msa0871790:CDS
GAGTCGTCGTCTCTGAAAGT+CGG 0.567859 6_1:+6946636 Msa0871790:CDS
GGCATCATGGTTACAAAGAG+AGG 0.568733 6_1:-6943204 None:intergenic
GTATTGGATGAGTATAATGT+AGG 0.571729 6_1:+6948556 Msa0871790:CDS
TGGAGTAGTTTGGGATGAAG+AGG 0.573454 6_1:+6945731 Msa0871790:CDS
GAGCAGAGGAGAGTTGTTGA+AGG 0.574556 6_1:+6948534 Msa0871790:CDS
ACCAGCAAAGCCTCTTGCAG+TGG 0.576026 6_1:-6947984 None:intergenic
ACTGATGCAGCCATAAATCC+CGG 0.576480 6_1:+6946783 Msa0871790:CDS
CCAGCAAAGCCTCTTGCAGT+GGG 0.577651 6_1:-6947983 None:intergenic
AGGCTTTAAAATTTCTTTAG+GGG 0.580892 6_1:-6946601 None:intergenic
TGAGCCACTCTTTCCTGCAG+AGG 0.581614 6_1:+6945054 Msa0871790:CDS
GAAATGGAAATAGGTAGTTG+AGG 0.583336 6_1:-6943233 None:intergenic
TGTTAGAGCTGGATTGAATG+TGG 0.584555 6_1:+6947761 Msa0871790:CDS
ATGGGAACTAAGAGTTAATG+TGG 0.586078 6_1:+6948740 Msa0871790:intron
AATTCGCGCAACGACCTGAC+CGG 0.589155 6_1:-6945993 None:intergenic
GTTGAGGAGGAAGGGCATCA+TGG 0.590987 6_1:-6943217 None:intergenic
AAAACTGGTGTAACAATTGG+TGG 0.591377 6_1:+6946750 Msa0871790:CDS
CATGCAACAATATCAATATG+TGG 0.593304 6_1:+6943105 Msa0871790:CDS
TCCTGGTAGGTCAAGAGCAG+AGG 0.593596 6_1:+6948520 Msa0871790:intron
GGACTAAATCCCACTGCAAG+AGG 0.594251 6_1:+6947974 Msa0871790:CDS
TGATCATACACTCACAGTTG+GGG 0.596415 6_1:+6946695 Msa0871790:CDS
GGAGCTGCCTGTGGTACTTG+AGG 0.608485 6_1:+6948621 Msa0871790:CDS
TCATACTGGCAGATCCCTGA+AGG 0.612123 6_1:+6945699 Msa0871790:intron
ACGTACGGTTGAAGATGGAA+TGG 0.614509 6_1:-6947552 None:intergenic
GGCTCAGAAGAAAACACAGT+AGG 0.617387 6_1:-6945037 None:intergenic
GGAGTAGTTTGGGATGAAGA+GGG 0.618790 6_1:+6945732 Msa0871790:CDS
CTGCAATGATGATATCTCCA+AGG 0.619534 6_1:-6948015 None:intergenic
ATGGAAATAGGTAGTTGAGG+AGG 0.619687 6_1:-6943230 None:intergenic
CACATTGTGACAAATTATCA+CGG 0.622758 6_1:+6945756 Msa0871790:CDS
CTCACAGTTGGGGTTATCAG+TGG 0.626344 6_1:+6946705 Msa0871790:CDS
TTCTGGTACCATGATAAGGA+AGG 0.626816 6_1:+6944221 Msa0871790:CDS
CCTTGAGCCTCACCCTTCCG+AGG 0.630076 6_1:-6946026 None:intergenic
TTAATATTCTAGCCTCGGAA+GGG 0.634185 6_1:+6946014 Msa0871790:CDS
AGGAAGATATGCAAATCTCA+CGG 0.655143 6_1:-6943184 None:intergenic
CGTGATAATTTGTCACAATG+TGG 0.656043 6_1:-6945755 None:intergenic
TTTCCAAACTGAATCAACTG+AGG 0.656560 6_1:-6947584 None:intergenic
ACACCAGTCACATTAAGTTG+AGG 0.658272 6_1:-6945543 None:intergenic
TCAACTTAATGTGACTGGTG+TGG 0.665408 6_1:+6945545 Msa0871790:CDS
TACCTATTTCCATTTCAACA+AGG 0.669296 6_1:+6943240 Msa0871790:CDS
GTAACATTGTTGATTCAAAG+GGG 0.673201 6_1:+6948586 Msa0871790:CDS
CTCAGAAGAAAACACAGTAG+GGG 0.683316 6_1:-6945035 None:intergenic
ACTGGTGTAACAATTGGTGG+TGG 0.687681 6_1:+6946753 Msa0871790:CDS
TGAAAAGTTGGAGCTGCCTG+TGG 0.711734 6_1:+6948612 Msa0871790:CDS
AAGATATGCAAATCTCACGG+CGG 0.795918 6_1:-6943181 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTAATTTTTTTTTATA+TGG + chr6_1:6948721-6948740 Msa0871790:intron 0.0%
!!! TTATTAATTTTTTTTTATAT+GGG + chr6_1:6948722-6948741 Msa0871790:intron 0.0%
!!! TTATTTTATTTTGTAACAAA+CGG + chr6_1:6948352-6948371 Msa0871790:intron 10.0%
!!! TTTTCATGTTAAATTTGAAT+TGG - chr6_1:6943602-6943621 None:intergenic 15.0%
!! AAAGATAGAATTAATTCTAA+AGG - chr6_1:6943650-6943669 None:intergenic 15.0%
!! TGATTATGTAAAATTGATTA+TGG - chr6_1:6943793-6943812 None:intergenic 15.0%
!!! AAAAGTATATTTAACTCTTA+AGG + chr6_1:6944062-6944081 Msa0871790:intron 15.0%
!!! GTATTTTGTTGTTTTTATAA+TGG + chr6_1:6944108-6944127 Msa0871790:intron 15.0%
!!! ATTGACATTTTTTATACTTA+AGG + chr6_1:6944627-6944646 Msa0871790:intron 15.0%
!!! TTGACATTTTTTATACTTAA+GGG + chr6_1:6944628-6944647 Msa0871790:intron 15.0%
!!! TTTTTATGAAATAAACCTAA+AGG - chr6_1:6944832-6944851 None:intergenic 15.0%
!!! AAAGAAAAAACTATAACTTT+TGG - chr6_1:6947458-6947477 None:intergenic 15.0%
!!! TATTTTATTTTGTAACAAAC+GGG + chr6_1:6948353-6948372 Msa0871790:intron 15.0%
!!! GTAATATGAAATGAATATTT+TGG - chr6_1:6948396-6948415 None:intergenic 15.0%
!! TTTAATTAATCTGAAAACTT+TGG + chr6_1:6948492-6948511 Msa0871790:intron 15.0%
!! TATACATAGGTTAAATCTAT+AGG + chr6_1:6943465-6943484 Msa0871790:intron 20.0%
!! ACATGAAAATAAAAAAAGAG+TGG + chr6_1:6943613-6943632 Msa0871790:intron 20.0%
!! ATATGTCCAATAAACTTTAT+AGG - chr6_1:6943905-6943924 None:intergenic 20.0%
!! AAAATAGAAAAGTTAACAGA+GGG - chr6_1:6944513-6944532 None:intergenic 20.0%
!! ATGGACATATCATAAATTAT+AGG - chr6_1:6944739-6944758 None:intergenic 20.0%
!! AAGCAAATTAATGAAAATGA+AGG - chr6_1:6944799-6944818 None:intergenic 20.0%
!! GGTTTATTTCATAAAAAAAC+TGG + chr6_1:6944835-6944854 Msa0871790:intron 20.0%
!!! AAGATATTGATAATCATGAT+AGG - chr6_1:6945167-6945186 None:intergenic 20.0%
!!! TTTTTACTTACAAATAGCTT+TGG + chr6_1:6945347-6945366 Msa0871790:intron 20.0%
!! AGTTAAAATAATAGAAACCA+TGG - chr6_1:6945449-6945468 None:intergenic 20.0%
!!! TTTCTATTATTTTAACTTGC+AGG + chr6_1:6945452-6945471 Msa0871790:intron 20.0%
!!! TTTTTGTATTACTCAGTAAT+TGG + chr6_1:6945944-6945963 Msa0871790:intron 20.0%
!!! TTTTGTATTACTCAGTAATT+GGG + chr6_1:6945945-6945964 Msa0871790:intron 20.0%
!!! ATGTTTTCTTTTCTACTTTT+TGG + chr6_1:6946179-6946198 Msa0871790:intron 20.0%
!!! TAGGCTTTAAAATTTCTTTA+GGG - chr6_1:6946605-6946624 None:intergenic 20.0%
!!! ATAGGCTTTAAAATTTCTTT+AGG - chr6_1:6946606-6946625 None:intergenic 20.0%
!! AATAAGATGAAAACAACTTA+TGG + chr6_1:6947036-6947055 Msa0871790:intron 20.0%
!! GAAAAACAACAATAAAAGTA+AGG - chr6_1:6947496-6947515 None:intergenic 20.0%
!!! ACTTTTATTGTTGTTTTTCT+TGG + chr6_1:6947497-6947516 Msa0871790:CDS 20.0%
!! ATATACAAACAATTTAGTGT+CGG + chr6_1:6947631-6947650 Msa0871790:intron 20.0%
!!! TAAGTATAAGGGTATATATA+CGG - chr6_1:6947716-6947735 None:intergenic 20.0%
!!! AATCATTGACTTAAGTATAA+GGG - chr6_1:6947727-6947746 None:intergenic 20.0%
!! ATAAATACAAAGTTTGATTG+TGG - chr6_1:6947876-6947895 None:intergenic 20.0%
!!! TGTTTCAAAAAATCACTTTT+AGG + chr6_1:6948085-6948104 Msa0871790:intron 20.0%
!! TCTTTACAAAAATTGAGAAT+CGG + chr6_1:6948132-6948151 Msa0871790:intron 20.0%
!! AAAAAATGTGATTCTCATTA+GGG + chr6_1:6948238-6948257 Msa0871790:intron 20.0%
!!! TAGAGTTTTACATAAAACAA+TGG - chr6_1:6948450-6948469 None:intergenic 20.0%
!!! AATCATGTATTTTTGTATCT+AGG + chr6_1:6948875-6948894 Msa0871790:three_prime_UTR 20.0%
! TTATGTAAGTGCTTATACAT+AGG + chr6_1:6943452-6943471 Msa0871790:intron 25.0%
!! TGTACATTTAGTTTCATTGT+TGG + chr6_1:6943498-6943517 Msa0871790:intron 25.0%
! ATGTTAAATTTGAATTGGAG+TGG - chr6_1:6943597-6943616 None:intergenic 25.0%
!! AAGCTAGAATTTGTAGTTTT+TGG + chr6_1:6943670-6943689 Msa0871790:intron 25.0%
! ATGCTTCCTATAAAGTTTAT+TGG + chr6_1:6943896-6943915 Msa0871790:intron 25.0%
! TTTGAATAACAAAACACAAG+TGG + chr6_1:6944085-6944104 Msa0871790:intron 25.0%
! TTGAATAACAAAACACAAGT+GGG + chr6_1:6944086-6944105 Msa0871790:intron 25.0%
! AACAGTAAAGATTCAAACTT+TGG - chr6_1:6944134-6944153 None:intergenic 25.0%
! AAGTTTGAATCTTTACTGTT+TGG + chr6_1:6944134-6944153 Msa0871790:intron 25.0%
! AGTTTGAATCTTTACTGTTT+GGG + chr6_1:6944135-6944154 Msa0871790:intron 25.0%
! CTATAAGCACACATAAAAAA+CGG - chr6_1:6944177-6944196 None:intergenic 25.0%
!!! GTTTTTTATGTGTGCTTATA+GGG + chr6_1:6944176-6944195 Msa0871790:intron 25.0%
!!! TGGAATAGTTTTAGTATAAG+AGG + chr6_1:6944446-6944465 Msa0871790:intron 25.0%
!!! GAATCTGAAGCTTTAAATTA+AGG - chr6_1:6944473-6944492 None:intergenic 25.0%
! GAAAATAGAAAAGTTAACAG+AGG - chr6_1:6944514-6944533 None:intergenic 25.0%
! TATTGAAACTTTAACCTTGT+TGG - chr6_1:6944674-6944693 None:intergenic 25.0%
! GTTAAAGTTTCAATACTTAG+AGG + chr6_1:6944679-6944698 Msa0871790:intron 25.0%
! ATAAAAAAACTGGACTTTGA+AGG + chr6_1:6944845-6944864 Msa0871790:intron 25.0%
! TAAAAAAACTGGACTTTGAA+GGG + chr6_1:6944846-6944865 Msa0871790:intron 25.0%
! TTTACAGAAAGATATGACAT+TGG - chr6_1:6944872-6944891 None:intergenic 25.0%
! GTCATATCTTTCTGTAAATA+CGG + chr6_1:6944874-6944893 Msa0871790:intron 25.0%
! ATTCAAAATCAATACACACT+AGG - chr6_1:6945256-6945275 None:intergenic 25.0%
!!! ACAAGTGACATTTTAAAATC+AGG - chr6_1:6945328-6945347 None:intergenic 25.0%
!! TCTATTTTCTGAATCTAATC+AGG - chr6_1:6945391-6945410 None:intergenic 25.0%
!!! CATTTTTTTCTTCTTCATAC+TGG + chr6_1:6945685-6945704 Msa0871790:intron 25.0%
!!! GAATATTTTAAGATCATGTG+AGG + chr6_1:6945905-6945924 Msa0871790:intron 25.0%
!!! AATTTTGAAGGTATACTCAT+TGG + chr6_1:6946120-6946139 Msa0871790:CDS 25.0%
!! TAAGGTTGCTATTGAAATTA+CGG + chr6_1:6946219-6946238 Msa0871790:intron 25.0%
! CAAGAATATAAACATGCATA+AGG - chr6_1:6946326-6946345 None:intergenic 25.0%
!!! AGGCTTTAAAATTTCTTTAG+GGG - chr6_1:6946604-6946623 None:intergenic 25.0%
!!! AATTTTAAAGCCTATCAATG+TGG + chr6_1:6946611-6946630 Msa0871790:CDS 25.0%
!!! ATTTTAAAGCCTATCAATGT+GGG + chr6_1:6946612-6946631 Msa0871790:CDS 25.0%
!! CAGTTTTACTAAAGATATCT+CGG - chr6_1:6946737-6946756 None:intergenic 25.0%
! AATAAAGTTCAGATATCGAA+GGG - chr6_1:6946828-6946847 None:intergenic 25.0%
! AATTCAAAAGGAAGCTTAAT+TGG + chr6_1:6947260-6947279 Msa0871790:intron 25.0%
! ATTCAAAAGGAAGCTTAATT+GGG + chr6_1:6947261-6947280 Msa0871790:intron 25.0%
! TCTGTATCATCTTATTATGA+TGG - chr6_1:6947337-6947356 None:intergenic 25.0%
!!! GAATCATTGACTTAAGTATA+AGG - chr6_1:6947728-6947747 None:intergenic 25.0%
! AATCAACTTAACGTTCAAAA+TGG + chr6_1:6947807-6947826 Msa0871790:CDS 25.0%
!!! TCATTTTTGATAGATGCTTT+TGG + chr6_1:6948215-6948234 Msa0871790:intron 25.0%
! GAAAAAATGTGATTCTCATT+AGG + chr6_1:6948237-6948256 Msa0871790:intron 25.0%
!!! AAGTAACATTGTTGATTCAA+AGG + chr6_1:6948584-6948603 Msa0871790:CDS 25.0%
!!! AGTAACATTGTTGATTCAAA+GGG + chr6_1:6948585-6948604 Msa0871790:CDS 25.0%
TCTCAAGAAAAGAGAGATAA+GGG - chr6_1:6943038-6943057 None:intergenic 30.0%
CATGCAACAATATCAATATG+TGG + chr6_1:6943105-6943124 Msa0871790:CDS 30.0%
TACCTATTTCCATTTCAACA+AGG + chr6_1:6943240-6943259 Msa0871790:CDS 30.0%
TACCTTGTTGAAATGGAAAT+AGG - chr6_1:6943245-6943264 None:intergenic 30.0%
!! AAAAGAGTACCTTGTTGAAA+TGG - chr6_1:6943252-6943271 None:intergenic 30.0%
! ACATTTAGTTTCATTGTTGG+AGG + chr6_1:6943501-6943520 Msa0871790:intron 30.0%
ATTCACTTACAATTTCTACG+CGG - chr6_1:6943574-6943593 None:intergenic 30.0%
TCAGTTGAACGATAAATTGA+AGG - chr6_1:6943716-6943735 None:intergenic 30.0%
AACTTGACTTTGTGTTTGTT+TGG - chr6_1:6943849-6943868 None:intergenic 30.0%
TTTGGAAGAGTTTATGGAAA+TGG - chr6_1:6943934-6943953 None:intergenic 30.0%
TCAATCCAAACAGTACTTAA+AGG + chr6_1:6943996-6944015 Msa0871790:intron 30.0%
CAATCCAAACAGTACTTAAA+GGG + chr6_1:6943997-6944016 Msa0871790:intron 30.0%
AATCCAAACAGTACTTAAAG+GGG + chr6_1:6943998-6944017 Msa0871790:intron 30.0%
!!! CGTTTTTTATGTGTGCTTAT+AGG + chr6_1:6944175-6944194 Msa0871790:intron 30.0%
ACTATTCCAATGAATTACAC+AGG - chr6_1:6944435-6944454 None:intergenic 30.0%
AAAGTTAACAGAGGGAAAAA+AGG - chr6_1:6944505-6944524 None:intergenic 30.0%
! AACTTTTCTATTTTCGCTTC+CGG + chr6_1:6944519-6944538 Msa0871790:intron 30.0%
AGGGACTAACTTGATATAAA+AGG + chr6_1:6944647-6944666 Msa0871790:intron 30.0%
TTGATATAAAAGGTCCAACA+AGG + chr6_1:6944657-6944676 Msa0871790:intron 30.0%
!! TTCTATGTAAGGCGTTTTTA+TGG - chr6_1:6944758-6944777 None:intergenic 30.0%
AACTCTGTAAGTTCTATGTA+AGG - chr6_1:6944769-6944788 None:intergenic 30.0%
AAGTGTTATACAAACCACAA+TGG - chr6_1:6945110-6945129 None:intergenic 30.0%
!! TTGAATCCTGCTTTTGAATA+TGG + chr6_1:6945288-6945307 Msa0871790:intron 30.0%
TCGACATTCAAATCATGAAT+CGG - chr6_1:6945418-6945437 None:intergenic 30.0%
TTTCAAACAGTTGGACAATT+CGG - chr6_1:6945479-6945498 None:intergenic 30.0%
!! ATGTGTTACTTTCAAACAGT+TGG - chr6_1:6945488-6945507 None:intergenic 30.0%
TTGTCTCTAGTGTAAAACAA+CGG + chr6_1:6945633-6945652 Msa0871790:intron 30.0%
TAGTGTAAAACAACGGTATA+TGG + chr6_1:6945640-6945659 Msa0871790:intron 30.0%
CACATTGTGACAAATTATCA+CGG + chr6_1:6945756-6945775 Msa0871790:CDS 30.0%
CACATAGTTCACTAAAATCT+TGG - chr6_1:6945886-6945905 None:intergenic 30.0%
! AGGGTAATCAAGAATTTTGA+AGG + chr6_1:6946108-6946127 Msa0871790:intron 30.0%
ATTTCAATAGCAACCTTACT+TGG - chr6_1:6946217-6946236 None:intergenic 30.0%
! AAGGTTGCTATTGAAATTAC+GGG + chr6_1:6946220-6946239 Msa0871790:intron 30.0%
CAGCAACAAGAAATCAAATT+TGG - chr6_1:6946565-6946584 None:intergenic 30.0%
CGAGATATCTTTAGTAAAAC+TGG + chr6_1:6946735-6946754 Msa0871790:CDS 30.0%
AGTAAAACTGGTGTAACAAT+TGG + chr6_1:6946747-6946766 Msa0871790:CDS 30.0%
CAATAAAGTTCAGATATCGA+AGG - chr6_1:6946829-6946848 None:intergenic 30.0%
!! CTACTTATTTGAGTCTTGTT+TGG + chr6_1:6946862-6946881 Msa0871790:intron 30.0%
TCCAAGATAGTTCATGAAAA+CGG - chr6_1:6947005-6947024 None:intergenic 30.0%
!!! AACTAGTGCTTTTTCATGAT+TGG + chr6_1:6947161-6947180 Msa0871790:intron 30.0%
! TTTTAGTGTGACTCTAATAG+CGG + chr6_1:6947224-6947243 Msa0871790:intron 30.0%
! TATAGCCGAGGAAATATTTT+TGG + chr6_1:6947381-6947400 Msa0871790:intron 30.0%
TGGAAAAGTAAGTAGTTAAC+TGG + chr6_1:6947601-6947620 Msa0871790:intron 30.0%
GGAAAAGTAAGTAGTTAACT+GGG + chr6_1:6947602-6947621 Msa0871790:intron 30.0%
GTCAATGATTCGTCAATTTA+AGG + chr6_1:6947737-6947756 Msa0871790:intron 30.0%
AAATGGAGCTCTTATTCTTA+CGG + chr6_1:6947824-6947843 Msa0871790:CDS 30.0%
!!! AGACTATTTTTTGGAACCTA+GGG - chr6_1:6947941-6947960 None:intergenic 30.0%
!!! AAGACTATTTTTTGGAACCT+AGG - chr6_1:6947942-6947961 None:intergenic 30.0%
AATCACTTGTCTACTTACAA+AGG - chr6_1:6948473-6948492 None:intergenic 30.0%
GTATTGGATGAGTATAATGT+AGG + chr6_1:6948556-6948575 Msa0871790:CDS 30.0%
!! GTAACATTGTTGATTCAAAG+GGG + chr6_1:6948586-6948605 Msa0871790:CDS 30.0%
TATCTAGGAACATGTGATTA+AGG + chr6_1:6948890-6948909 Msa0871790:three_prime_UTR 30.0%
AAAAGAGAGATAAGGGTAAG+TGG - chr6_1:6943031-6943050 None:intergenic 35.0%
CTCTCAAGAAAAGAGAGATA+AGG - chr6_1:6943039-6943058 None:intergenic 35.0%
!!! ATGCTTTTTTGAGGAGTTGT+TGG - chr6_1:6943146-6943165 None:intergenic 35.0%
AGGAAGATATGCAAATCTCA+CGG - chr6_1:6943187-6943206 None:intergenic 35.0%
GAAATGGAAATAGGTAGTTG+AGG - chr6_1:6943236-6943255 None:intergenic 35.0%
! AGCAGTTTCTAGAGAGATTA+AGG + chr6_1:6943395-6943414 Msa0871790:intron 35.0%
AGAGAGATTAAGGTGATGTT+TGG + chr6_1:6943405-6943424 Msa0871790:intron 35.0%
ATTGTTGGAGGAAGCAAAAT+TGG + chr6_1:6943513-6943532 Msa0871790:intron 35.0%
AGGTGTAATTTCGACATGTT+TGG + chr6_1:6943542-6943561 Msa0871790:intron 35.0%
! AAAGTGAGTTGAATGCAAAC+TGG - chr6_1:6943767-6943786 None:intergenic 35.0%
TGACTGTTTGGAAGAGTTTA+TGG - chr6_1:6943940-6943959 None:intergenic 35.0%
TAAGTACTCTTGTGACTGTT+TGG - chr6_1:6943952-6943971 None:intergenic 35.0%
!! GTTTTTCAGTCCTACTCTTT+AGG - chr6_1:6944029-6944048 None:intergenic 35.0%
AAAGAGTAGGACTGAAAAAC+AGG + chr6_1:6944029-6944048 Msa0871790:intron 35.0%
TTGAATCTTTACTGTTTGGG+AGG + chr6_1:6944138-6944157 Msa0871790:intron 35.0%
TGAATCTTTACTGTTTGGGA+GGG + chr6_1:6944139-6944158 Msa0871790:intron 35.0%
CACAATAACCTTCCTTATCA+TGG - chr6_1:6944232-6944251 None:intergenic 35.0%
ATTCCTCTTTCTGTTCTTCA+AGG + chr6_1:6944292-6944311 Msa0871790:CDS 35.0%
ACAGAGGGAAAAAAGGATAA+AGG - chr6_1:6944498-6944517 None:intergenic 35.0%
!!! TTAAGCCTGTGTTTTTTGTG+CGG - chr6_1:6944599-6944618 None:intergenic 35.0%
ACAAAAAACACAGGCTTAAG+AGG + chr6_1:6944600-6944619 Msa0871790:intron 35.0%
ACCAATACAGAAAAAGAACG+TGG + chr6_1:6944702-6944721 Msa0871790:intron 35.0%
CCAATACAGAAAAAGAACGT+GGG + chr6_1:6944703-6944722 Msa0871790:intron 35.0%
TGCTTATCTAAACGACCTTT+AGG + chr6_1:6944814-6944833 Msa0871790:intron 35.0%
TTCTGTAAATACGGTTGACA+TGG + chr6_1:6944883-6944902 Msa0871790:intron 35.0%
TAAATGTACAGCACTAGCAT+TGG + chr6_1:6944982-6945001 Msa0871790:intron 35.0%
AAATGTACAGCACTAGCATT+GGG + chr6_1:6944983-6945002 Msa0871790:intron 35.0%
CCTAGAAATATTGCTACAGA+AGG - chr6_1:6945139-6945158 None:intergenic 35.0%
CCTTCTGTAGCAATATTTCT+AGG + chr6_1:6945136-6945155 Msa0871790:intron 35.0%
TGATAGCCATATTCAAAAGC+AGG - chr6_1:6945297-6945316 None:intergenic 35.0%
!! GAATGTCGATTTGATAACCA+TGG + chr6_1:6945429-6945448 Msa0871790:intron 35.0%
GTAAAACAACGGTATATGGT+AGG + chr6_1:6945644-6945663 Msa0871790:intron 35.0%
! CGTGATAATTTGTCACAATG+TGG - chr6_1:6945758-6945777 None:intergenic 35.0%
GCGAATTAATATTCTAGCCT+CGG + chr6_1:6946009-6946028 Msa0871790:CDS 35.0%
ATTAATATTCTAGCCTCGGA+AGG + chr6_1:6946013-6946032 Msa0871790:CDS 35.0%
TTAATATTCTAGCCTCGGAA+GGG + chr6_1:6946014-6946033 Msa0871790:CDS 35.0%
TGTGATATGTTTCTCTGACA+CGG + chr6_1:6946075-6946094 Msa0871790:intron 35.0%
TCTGACACGGTACTTTATAA+AGG + chr6_1:6946088-6946107 Msa0871790:intron 35.0%
CTGACACGGTACTTTATAAA+GGG + chr6_1:6946089-6946108 Msa0871790:intron 35.0%
ATCTTGCGCAAAATTCTGAA+TGG + chr6_1:6946258-6946277 Msa0871790:intron 35.0%
TCTTGCGCAAAATTCTGAAT+GGG + chr6_1:6946259-6946278 Msa0871790:intron 35.0%
CATTTCGTAGATATGCCTAT+GGG - chr6_1:6946397-6946416 None:intergenic 35.0%
AGTGTATGATCAAAGCCAAA+TGG - chr6_1:6946687-6946706 None:intergenic 35.0%
TTTGATCATACACTCACAGT+TGG + chr6_1:6946693-6946712 Msa0871790:CDS 35.0%
TTGATCATACACTCACAGTT+GGG + chr6_1:6946694-6946713 Msa0871790:CDS 35.0%
AAAACTGGTGTAACAATTGG+TGG + chr6_1:6946750-6946769 Msa0871790:CDS 35.0%
! ACCGTTTTCATGAACTATCT+TGG + chr6_1:6947001-6947020 Msa0871790:intron 35.0%
GCACTAGTTCAAATCTTGTT+TGG - chr6_1:6947150-6947169 None:intergenic 35.0%
! CTTCCTTTTGAATTCAGAAG+TGG - chr6_1:6947254-6947273 None:intergenic 35.0%
AAAGCAATTAGAGCAACAGT+GGG - chr6_1:6947407-6947426 None:intergenic 35.0%
AAAAGCAATTAGAGCAACAG+TGG - chr6_1:6947408-6947427 None:intergenic 35.0%
!! TAATTGCTTTTCTTTGCACG+TGG + chr6_1:6947417-6947436 Msa0871790:intron 35.0%
!!! GTTGTTTTTCTTGGTATTGC+AGG + chr6_1:6947506-6947525 Msa0871790:CDS 35.0%
TTTCCAAACTGAATCAACTG+AGG - chr6_1:6947587-6947606 None:intergenic 35.0%
! CAATTTAAGGTTGTTAGAGC+TGG + chr6_1:6947750-6947769 Msa0871790:intron 35.0%
!! AGTTGATTTGCAATCAAGTC+TGG - chr6_1:6947795-6947814 None:intergenic 35.0%
GGTACAAGAAACAAATGTCA+TGG - chr6_1:6947855-6947874 None:intergenic 35.0%
!!! TTGGCAGCAAGACTATTTTT+TGG - chr6_1:6947950-6947969 None:intergenic 35.0%
TTTGCTGGTAATATAGTCCT+TGG + chr6_1:6947998-6948017 Msa0871790:CDS 35.0%
TTCTGTAAAAGAAGACTCAC+AGG - chr6_1:6948052-6948071 None:intergenic 35.0%
CAATGGCATTAGACTATGAA+AGG - chr6_1:6948433-6948452 None:intergenic 35.0%
TGAAAACTTTGGTACATTCC+TGG + chr6_1:6948503-6948522 Msa0871790:intron 35.0%
ATGGGAACTAAGAGTTAATG+TGG + chr6_1:6948740-6948759 Msa0871790:intron 35.0%
!!! ACACTGCTGATGCTTTTTTG+AGG - chr6_1:6943155-6943174 None:intergenic 40.0%
AAGATATGCAAATCTCACGG+CGG - chr6_1:6943184-6943203 None:intergenic 40.0%
AATAGGTAGTTGAGGAGGAA+GGG - chr6_1:6943228-6943247 None:intergenic 40.0%
AAATAGGTAGTTGAGGAGGA+AGG - chr6_1:6943229-6943248 None:intergenic 40.0%
ATGGAAATAGGTAGTTGAGG+AGG - chr6_1:6943233-6943252 None:intergenic 40.0%
! GGAAGCAAAATTGGTTTCAG+AGG + chr6_1:6943522-6943541 Msa0871790:intron 40.0%
! CTACCCCTTTAAGTACTGTT+TGG - chr6_1:6944004-6944023 None:intergenic 40.0%
CAAGATGAAAGTCAGGATTC+TGG + chr6_1:6944204-6944223 Msa0871790:CDS 40.0%
AGGATTCTGGTACCATGATA+AGG + chr6_1:6944217-6944236 Msa0871790:CDS 40.0%
TTCTGGTACCATGATAAGGA+AGG + chr6_1:6944221-6944240 Msa0871790:CDS 40.0%
GTACCTTGAAGAACAGAAAG+AGG - chr6_1:6944298-6944317 None:intergenic 40.0%
! TGTTCTTCAAGGTACTTGTC+AGG + chr6_1:6944303-6944322 Msa0871790:CDS 40.0%
AACATGAAAACAGAACCGTG+CGG - chr6_1:6944330-6944349 None:intergenic 40.0%
TAAGCGCCTGTGTAATTCAT+TGG + chr6_1:6944426-6944445 Msa0871790:intron 40.0%
! TTTTCTATTTTCGCTTCCGG+AGG + chr6_1:6944522-6944541 Msa0871790:intron 40.0%
ATTGACCGCACAAAAAACAC+AGG + chr6_1:6944591-6944610 Msa0871790:intron 40.0%
! CCCACGTTCTTTTTCTGTAT+TGG - chr6_1:6944706-6944725 None:intergenic 40.0%
CTCAGAAGAAAACACAGTAG+GGG - chr6_1:6945038-6945057 None:intergenic 40.0%
GCTCAGAAGAAAACACAGTA+GGG - chr6_1:6945039-6945058 None:intergenic 40.0%
CAAACCACAATGGACAAAAG+AGG - chr6_1:6945100-6945119 None:intergenic 40.0%
! ACACCAGTCACATTAAGTTG+AGG - chr6_1:6945546-6945565 None:intergenic 40.0%
TCAACTTAATGTGACTGGTG+TGG + chr6_1:6945545-6945564 Msa0871790:CDS 40.0%
!! AAATGGCTCTGGAGTAGTTT+GGG + chr6_1:6945722-6945741 Msa0871790:CDS 40.0%
CATTGGAGCTGATCGTTTAA+AGG + chr6_1:6946137-6946156 Msa0871790:CDS 40.0%
AAAGGATCTAGCTGTCTTGA+AGG + chr6_1:6946155-6946174 Msa0871790:CDS 40.0%
! GATTTGTTTGCCACCAAGTA+AGG + chr6_1:6946201-6946220 Msa0871790:intron 40.0%
TCAATAGCAACCTTACTTGG+TGG - chr6_1:6946214-6946233 None:intergenic 40.0%
CTTGCGCAAAATTCTGAATG+GGG + chr6_1:6946260-6946279 Msa0871790:intron 40.0%
GCATTTCGTAGATATGCCTA+TGG - chr6_1:6946398-6946417 None:intergenic 40.0%
TAAACCGACGAATAACATCC+AGG + chr6_1:6946524-6946543 Msa0871790:intron 40.0%
AAACCGACGAATAACATCCA+GGG + chr6_1:6946525-6946544 Msa0871790:intron 40.0%
TGGAAGTAAAATATCCTCCC+TGG - chr6_1:6946545-6946564 None:intergenic 40.0%
TTTCTTGTTGCTGCTGTTAC+AGG + chr6_1:6946572-6946591 Msa0871790:intron 40.0%
TTGGCGATTGGAAATCCATT+TGG + chr6_1:6946669-6946688 Msa0871790:CDS 40.0%
TGATCATACACTCACAGTTG+GGG + chr6_1:6946695-6946714 Msa0871790:CDS 40.0%
TAACCTGTTTCCGGGATTTA+TGG - chr6_1:6946796-6946815 None:intergenic 40.0%
GGTCCACTTCTGAATTCAAA+AGG + chr6_1:6947248-6947267 Msa0871790:intron 40.0%
GCCTGTCTGAGTAAATATTG+CGG - chr6_1:6947294-6947313 None:intergenic 40.0%
GTGTGATTATGATATAGCCG+AGG + chr6_1:6947369-6947388 Msa0871790:intron 40.0%
GTGGGCCAAAAATATTTCCT+CGG - chr6_1:6947389-6947408 None:intergenic 40.0%
! GTTCCTCAGTTGATTCAGTT+TGG + chr6_1:6947581-6947600 Msa0871790:CDS 40.0%
! AGCACCATTAAAAGTGTGTC+CGG - chr6_1:6947660-6947679 None:intergenic 40.0%
TGTTAGAGCTGGATTGAATG+TGG + chr6_1:6947761-6947780 Msa0871790:CDS 40.0%
CTCTAAACCTTATGTTCCCT+AGG + chr6_1:6947922-6947941 Msa0871790:intron 40.0%
! TTTGGAACCTAGGGAACATA+AGG - chr6_1:6947932-6947951 None:intergenic 40.0%
! AATAGTCTTGCTGCCAAAGT+AGG + chr6_1:6947953-6947972 Msa0871790:CDS 40.0%
AGTGGGATTTAGTCCTACTT+TGG - chr6_1:6947969-6947988 None:intergenic 40.0%
CTGCAATGATGATATCTCCA+AGG - chr6_1:6948018-6948037 None:intergenic 40.0%
AACTTTGGTACATTCCTGGT+AGG + chr6_1:6948507-6948526 Msa0871790:intron 40.0%
! AGGAGAGTTGTTGAAGGTAT+TGG + chr6_1:6948540-6948559 Msa0871790:CDS 40.0%
TCAAAGGGGTGATGAAAAGT+TGG + chr6_1:6948600-6948619 Msa0871790:CDS 40.0%
GGCATCATGGTTACAAAGAG+AGG - chr6_1:6943207-6943226 None:intergenic 45.0%
AGGGGTAGTTCCTAAAGAGT+AGG + chr6_1:6944016-6944035 Msa0871790:intron 45.0%
GGCTGTTCAAGATGAAAGTC+AGG + chr6_1:6944197-6944216 Msa0871790:CDS 45.0%
! CATTAACACGCGTCTTGTTG+GGG - chr6_1:6944256-6944275 None:intergenic 45.0%
! CCATTAACACGCGTCTTGTT+GGG - chr6_1:6944257-6944276 None:intergenic 45.0%
GGCTCAGAAGAAAACACAGT+AGG - chr6_1:6945040-6945059 None:intergenic 45.0%
ACCACAATGGACAAAAGAGG+AGG - chr6_1:6945097-6945116 None:intergenic 45.0%
CGTCCTCAACTTAATGTGAC+TGG + chr6_1:6945540-6945559 Msa0871790:CDS 45.0%
TAATGTGACTGGTGTGGTTG+AGG + chr6_1:6945551-6945570 Msa0871790:CDS 45.0%
!! GAAATGGCTCTGGAGTAGTT+TGG + chr6_1:6945721-6945740 Msa0871790:CDS 45.0%
! TGGAGTAGTTTGGGATGAAG+AGG + chr6_1:6945731-6945750 Msa0871790:CDS 45.0%
! GGAGTAGTTTGGGATGAAGA+GGG + chr6_1:6945732-6945751 Msa0871790:CDS 45.0%
CTTTCGAGAAATCCAAGCTC+CGG + chr6_1:6945974-6945993 Msa0871790:CDS 45.0%
TTCTTGCGTTGAGACTCGTA+CGG + chr6_1:6946340-6946359 Msa0871790:intron 45.0%
GTTGAGACTCGTACGGATAA+TGG + chr6_1:6946347-6946366 Msa0871790:intron 45.0%
CCTATGGGAATGTGTACGAA+AGG - chr6_1:6946382-6946401 None:intergenic 45.0%
CCTTTCGTACACATTCCCAT+AGG + chr6_1:6946379-6946398 Msa0871790:intron 45.0%
ACTGGTGTAACAATTGGTGG+TGG + chr6_1:6946753-6946772 Msa0871790:CDS 45.0%
ACTGATGCAGCCATAAATCC+CGG + chr6_1:6946783-6946802 Msa0871790:CDS 45.0%
AGCCTAGTGTAACCTGTTTC+CGG - chr6_1:6946805-6946824 None:intergenic 45.0%
TAGTGTGACTCTAATAGCGG+AGG + chr6_1:6947227-6947246 Msa0871790:intron 45.0%
GCCGCAATATTTACTCAGAC+AGG + chr6_1:6947290-6947309 Msa0871790:intron 45.0%
ACGTACGGTTGAAGATGGAA+TGG - chr6_1:6947555-6947574 None:intergenic 45.0%
ATTCGACGTACGGTTGAAGA+TGG - chr6_1:6947560-6947579 None:intergenic 45.0%
! AACAATTTAGTGTCGGACGC+CGG + chr6_1:6947638-6947657 Msa0871790:intron 45.0%
!! AAATTATTCAATATTAAAAT+CGG + chr6_1:6948325-6948344 Msa0871790:intron 5.0%
CCCAACAAGACGCGTGTTAA+TGG + chr6_1:6944254-6944273 Msa0871790:CDS 50.0%
GCCATTAACACGCGTCTTGT+TGG - chr6_1:6944258-6944277 None:intergenic 50.0%
CTTCTCACTTGATGCACCTC+CGG - chr6_1:6944541-6944560 None:intergenic 50.0%
CTTACCTCTGCAGGAAAGAG+TGG - chr6_1:6945061-6945080 None:intergenic 50.0%
AGCTGAAAGCTTACCTCTGC+AGG - chr6_1:6945070-6945089 None:intergenic 50.0%
! GCCTCCTCTTTTGTCCATTG+TGG + chr6_1:6945093-6945112 Msa0871790:intron 50.0%
CTGGTGTGGTTGAGGTAACA+TGG + chr6_1:6945559-6945578 Msa0871790:intron 50.0%
TCATACTGGCAGATCCCTGA+AGG + chr6_1:6945699-6945718 Msa0871790:intron 50.0%
TGGCAGATCCCTGAAGGAAA+TGG + chr6_1:6945705-6945724 Msa0871790:intron 50.0%
ATCCCTGAAGGAAATGGCTC+TGG + chr6_1:6945711-6945730 Msa0871790:CDS 50.0%
CTCCAGAGCCATTTCCTTCA+GGG - chr6_1:6945716-6945735 None:intergenic 50.0%
ACTCCAGAGCCATTTCCTTC+AGG - chr6_1:6945717-6945736 None:intergenic 50.0%
CCTCCCTGGATGTTATTCGT+CGG - chr6_1:6946531-6946550 None:intergenic 50.0%
GACGACTCTCCCACATTGAT+AGG - chr6_1:6946624-6946643 None:intergenic 50.0%
! GAGTCGTCGTCTCTGAAAGT+CGG + chr6_1:6946636-6946655 Msa0871790:CDS 50.0%
! AGTCGTCGTCTCTGAAAGTC+GGG + chr6_1:6946637-6946656 Msa0871790:CDS 50.0%
GAAAGTCGGGCAGCAATGTT+TGG + chr6_1:6946650-6946669 Msa0871790:CDS 50.0%
CTCACAGTTGGGGTTATCAG+TGG + chr6_1:6946705-6946724 Msa0871790:CDS 50.0%
CAGCCATAAATCCCGGAAAC+AGG + chr6_1:6946790-6946809 Msa0871790:CDS 50.0%
TCCCGGAAACAGGTTACACT+AGG + chr6_1:6946800-6946819 Msa0871790:intron 50.0%
GCCTAGTGTAACCTGTTTCC+GGG - chr6_1:6946804-6946823 None:intergenic 50.0%
GGTATTGCAGGAACTTCAGC+TGG + chr6_1:6947518-6947537 Msa0871790:CDS 50.0%
CTGAGGAACGATTCGACGTA+CGG - chr6_1:6947570-6947589 None:intergenic 50.0%
! GACGCCGGACACACTTTTAA+TGG + chr6_1:6947653-6947672 Msa0871790:intron 50.0%
GAGCAGAGGAGAGTTGTTGA+AGG + chr6_1:6948534-6948553 Msa0871790:CDS 50.0%
TGAAAAGTTGGAGCTGCCTG+TGG + chr6_1:6948612-6948631 Msa0871790:CDS 50.0%
CTCTGTTCCTCAAGTACCAC+AGG - chr6_1:6948631-6948650 None:intergenic 50.0%
!! GTTGAGGAGGAAGGGCATCA+TGG - chr6_1:6943220-6943239 None:intergenic 55.0%
AGGTACTTGTCAGGTCCGCA+CGG + chr6_1:6944312-6944331 Msa0871790:intron 55.0%
TGAGCCACTCTTTCCTGCAG+AGG + chr6_1:6945054-6945073 Msa0871790:CDS 55.0%
GAGAAATCCAAGCTCCGGTC+AGG + chr6_1:6945979-6945998 Msa0871790:CDS 55.0%
AATTCGCGCAACGACCTGAC+CGG - chr6_1:6945996-6946015 None:intergenic 55.0%
ATTCTAGCCTCGGAAGGGTG+AGG + chr6_1:6946019-6946038 Msa0871790:intron 55.0%
CCGACGAATAACATCCAGGG+AGG + chr6_1:6946528-6946547 Msa0871790:intron 55.0%
GGGCAGCAATGTTTGGCGAT+TGG + chr6_1:6946657-6946676 Msa0871790:CDS 55.0%
GCAGGAACTTCAGCTGGTGT+AGG + chr6_1:6947524-6947543 Msa0871790:CDS 55.0%
TCCTGGTAGGTCAAGAGCAG+AGG + chr6_1:6948520-6948539 Msa0871790:intron 55.0%
TCCTCTGCTCTTGACCTACC+AGG - chr6_1:6948524-6948543 None:intergenic 55.0%
GGAGCTGCCTGTGGTACTTG+AGG + chr6_1:6948621-6948640 Msa0871790:CDS 60.0%
GCAACGACCTGACCGGAGCT+TGG - chr6_1:6945989-6946008 None:intergenic 65.0%
CCTTGAGCCTCACCCTTCCG+AGG - chr6_1:6946029-6946048 None:intergenic 65.0%
CCTCGGAAGGGTGAGGCTCA+AGG + chr6_1:6946026-6946045 Msa0871790:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 6942989 6948925 6942989 ID=Msa0871790;Name=Msa0871790
chr6_1 mRNA 6942989 6948925 6942989 ID=Msa0871790-mRNA-1;Parent=Msa0871790;Name=Msa0871790-mRNA-1;_AED=0.20;_eAED=0.20;_QI=100|0.91|0.92|1|0.91|0.84|13|248|452
chr6_1 exon 6942989 6943261 6942989 ID=Msa0871790-mRNA-1:exon:2119;Parent=Msa0871790-mRNA-1
chr6_1 exon 6944197 6944324 6944197 ID=Msa0871790-mRNA-1:exon:2120;Parent=Msa0871790-mRNA-1
chr6_1 exon 6944993 6945075 6944993 ID=Msa0871790-mRNA-1:exon:2121;Parent=Msa0871790-mRNA-1
chr6_1 exon 6945474 6945572 6945474 ID=Msa0871790-mRNA-1:exon:2122;Parent=Msa0871790-mRNA-1
chr6_1 exon 6945711 6945777 6945711 ID=Msa0871790-mRNA-1:exon:2123;Parent=Msa0871790-mRNA-1
chr6_1 exon 6945960 6946035 6945960 ID=Msa0871790-mRNA-1:exon:2124;Parent=Msa0871790-mRNA-1
chr6_1 exon 6946110 6946176 6946110 ID=Msa0871790-mRNA-1:exon:2125;Parent=Msa0871790-mRNA-1
chr6_1 exon 6946594 6946811 6946594 ID=Msa0871790-mRNA-1:exon:2126;Parent=Msa0871790-mRNA-1
chr6_1 exon 6947484 6947607 6947484 ID=Msa0871790-mRNA-1:exon:2127;Parent=Msa0871790-mRNA-1
chr6_1 exon 6947759 6947845 6947759 ID=Msa0871790-mRNA-1:exon:2128;Parent=Msa0871790-mRNA-1
chr6_1 exon 6947944 6948051 6947944 ID=Msa0871790-mRNA-1:exon:2129;Parent=Msa0871790-mRNA-1
chr6_1 exon 6948529 6948723 6948529 ID=Msa0871790-mRNA-1:exon:2130;Parent=Msa0871790-mRNA-1
chr6_1 exon 6948744 6948925 6948744 ID=Msa0871790-mRNA-1:exon:2131;Parent=Msa0871790-mRNA-1
chr6_1 five_prime_UTR 6942989 6943088 6942989 ID=Msa0871790-mRNA-1:five_prime_utr;Parent=Msa0871790-mRNA-1
chr6_1 CDS 6943089 6943261 6943089 ID=Msa0871790-mRNA-1:cds;Parent=Msa0871790-mRNA-1
chr6_1 CDS 6944197 6944324 6944197 ID=Msa0871790-mRNA-1:cds;Parent=Msa0871790-mRNA-1
chr6_1 CDS 6944993 6945075 6944993 ID=Msa0871790-mRNA-1:cds;Parent=Msa0871790-mRNA-1
chr6_1 CDS 6945474 6945572 6945474 ID=Msa0871790-mRNA-1:cds;Parent=Msa0871790-mRNA-1
chr6_1 CDS 6945711 6945777 6945711 ID=Msa0871790-mRNA-1:cds;Parent=Msa0871790-mRNA-1
chr6_1 CDS 6945960 6946035 6945960 ID=Msa0871790-mRNA-1:cds;Parent=Msa0871790-mRNA-1
chr6_1 CDS 6946110 6946176 6946110 ID=Msa0871790-mRNA-1:cds;Parent=Msa0871790-mRNA-1
chr6_1 CDS 6946594 6946811 6946594 ID=Msa0871790-mRNA-1:cds;Parent=Msa0871790-mRNA-1
chr6_1 CDS 6947484 6947607 6947484 ID=Msa0871790-mRNA-1:cds;Parent=Msa0871790-mRNA-1
chr6_1 CDS 6947759 6947845 6947759 ID=Msa0871790-mRNA-1:cds;Parent=Msa0871790-mRNA-1
chr6_1 CDS 6947944 6948051 6947944 ID=Msa0871790-mRNA-1:cds;Parent=Msa0871790-mRNA-1
chr6_1 CDS 6948529 6948657 6948529 ID=Msa0871790-mRNA-1:cds;Parent=Msa0871790-mRNA-1
chr6_1 three_prime_UTR 6948658 6948723 6948658 ID=Msa0871790-mRNA-1:three_prime_utr;Parent=Msa0871790-mRNA-1
chr6_1 three_prime_UTR 6948744 6948925 6948744 ID=Msa0871790-mRNA-1:three_prime_utr;Parent=Msa0871790-mRNA-1
Gene Sequence

>Msa0871790

ATGCAAGTAGTATCAGCATGCAACAATATCAATATGTGGTGTATGTCAATGCTGCCAACAACTCCTCAAAAAAGCATCAGCAGTGTTCTAAGCCGCCGTGAGATTTGCATATCTTCCTCTCTTTGTAACCATGATGCCCTTCCTCCTCAACTACCTATTTCCATTTCAACAAGGGCTGTTCAAGATGAAAGTCAGGATTCTGGTACCATGATAAGGAAGGTTATTGTGTCCCCAACAAGACGCGTGTTAATGGCGAGTTTGACTTTGTATTCCTCTTTCTGTTCTTCAAGGTACTTGTCAGCACTAGCATTGGGAGATACATCAGTGACACTTGAAGAAGTGACCCCTACTGTGTTTTCTTCTGAGCCACTCTTTCCTGCAGAGGACCGAATTGTCCAACTGTTTGAAAGTAACACATACTCTGTTGTTAACATCTTTGATGTGACGTTGCGTCCTCAACTTAATGTGACTGGTGTGGTTGAGATCCCTGAAGGAAATGGCTCTGGAGTAGTTTGGGATGAAGAGGGCCACATTGTGACAAATTATCACGTAATTGGGAATGCACTTTCGAGAAATCCAAGCTCCGGTCAGGTCGTTGCGCGAATTAATATTCTAGCCTCGGAAGGGGTAATCAAGAATTTTGAAGGTATACTCATTGGAGCTGATCGTTTAAAGGATCTAGCTGTCTTGAAGGTAGACGCCCCTAAAGAAATTTTAAAGCCTATCAATGTGGGAGAGTCGTCGTCTCTGAAAGTCGGGCAGCAATGTTTGGCGATTGGAAATCCATTTGGCTTTGATCATACACTCACAGTTGGGGTTATCAGTGGACTTAACCGAGATATCTTTAGTAAAACTGGTGTAACAATTGGTGGTGGTATTCAAACTGATGCAGCCATAAATCCCGGAAACAGTTTTGTATGCCTTACTTTTATTGTTGTTTTTCTTGGTATTGCAGGAACTTCAGCTGGTGTAGGATTTGCCATTCCATCTTCAACCGTACGTCGAATCGTTCCTCAGTTGATTCAGTTTGGAAAAGTTGTTAGAGCTGGATTGAATGTGGATATTGCTCCAGACTTGATTGCAAATCAACTTAACGTTCAAAATGGAGCTCTTATTCTTACGGTTCCAAAAAATAGTCTTGCTGCCAAAGTAGGACTAAATCCCACTGCAAGAGGCTTTGCTGGTAATATAGTCCTTGGAGATATCATCATTGCAGTTGACAATAAACCTGTCAAGAGCAGAGGAGAGTTGTTGAAGGTATTGGATGAGTATAATGTAGGAGATAAAGTAACATTGTTGATTCAAAGGGGTGATGAAAAGTTGGAGCTGCCTGTGGTACTTGAGGAACAGAGTTCTTGA

Protein sequence

>Msa0871790

MQVVSACNNINMWCMSMLPTTPQKSISSVLSRREICISSSLCNHDALPPQLPISISTRAVQDESQDSGTMIRKVIVSPTRRVLMASLTLYSSFCSSRYLSALALGDTSVTLEEVTPTVFSSEPLFPAEDRIVQLFESNTYSVVNIFDVTLRPQLNVTGVVEIPEGNGSGVVWDEEGHIVTNYHVIGNALSRNPSSGQVVARINILASEGVIKNFEGILIGADRLKDLAVLKVDAPKEILKPINVGESSSLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSKTGVTIGGGIQTDAAINPGNSFVCLTFIVVFLGIAGTSAGVGFAIPSSTVRRIVPQLIQFGKVVRAGLNVDIAPDLIANQLNVQNGALILTVPKNSLAAKVGLNPTARGFAGNIVLGDIIIAVDNKPVKSRGELLKVLDEYNVGDKVTLLIQRGDEKLELPVVLEEQSS*