AlfalfaGEDB | Msa0140960

M. sativa cultivar zhongmu-4 / Msa0140960

KEGG: K13196
GO: -
PFAM: PF00628.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0140960	XP_024635041.2	87.219	845	48	8	1	810	1	820	0.0	1415

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0140960	sp\|Q6ZJM9\|EHD3_ORYSJ	32.984	382	195	16	431	760	167	539	5.36e-52	194

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0140960	A0A396IYH0	87.101	845	48	9	1	810	1	819	0.0	1408

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TFs/TRs:

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Gene ID	Type	Classification
Msa0140960	TR	PHD

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003700	Msa0140960	0.844273	8.371766e-59	-8.615850e-47
Msa0008410	Msa0140960	0.810864	9.326120e-51	-8.615850e-47
Msa0016670	Msa0140960	0.804926	1.708388e-49	-8.615850e-47
Msa0018620	Msa0140960	0.802556	5.303804e-49	-8.615850e-47
Msa0031340	Msa0140960	0.807327	5.336054e-50	-8.615850e-47
Msa0044020	Msa0140960	0.820959	5.206340e-53	-8.615850e-47
Msa0047280	Msa0140960	0.810139	1.336890e-50	-8.615850e-47
Msa0064290	Msa0140960	0.801608	8.310431e-49	-8.615850e-47
Msa0068680	Msa0140960	0.806461	8.136405e-50	-8.615850e-47
Msa0073670	Msa0140960	0.812032	5.197843e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0140960	MtrunA17_Chr3g0125331	87.101	845	48	9	1	810	1	819	0.0	1408
Msa0140960	MtrunA17_Chr6g0451001	38.158	76	46	1	695	769	1247	1322	1.36e-12	72.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0140960	AT1G77250.1	41.099	382	210	8	431	805	144	517	5.58e-91	296
Msa0140960	AT3G01460.1	41.176	68	40	0	695	762	1289	1356	2.68e-13	74.7

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Find 190 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAGTTTGAGTAGAAG+AGG	0.579344	1_3:+75645798	Msa0140960:exon
AAAAGTGAAGCTTTGAATGA+TGG	0.470293	1_3:+75641567	Msa0140960:CDS
AAAAGTGAAGGCGTTAGCAA+TGG	0.553778	1_3:+75641702	Msa0140960:intron
AAAATGTGATGCTGGAATCA+AGG	0.493152	1_3:+75645595	Msa0140960:CDS
AAAATTGTGTAGTATGTGCG+AGG	0.724793	1_3:+75645147	Msa0140960:CDS
AAACAGTTATACCAGTCATT+AGG	0.449339	1_3:+75643091	Msa0140960:CDS
AAACGGAAAGCCATTGATGA+TGG	0.439899	1_3:+75640949	Msa0140960:CDS
AAACTTGGCATATACAAGAA+GGG	0.621755	1_3:-75645454	None:intergenic
AAAGCCAGTTGCAAAGTGTG+TGG	0.629925	1_3:+75645305	Msa0140960:CDS
AAAGCTTCAAGATACATTTA+AGG	0.218299	1_3:+75644006	Msa0140960:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTTTGAAAAATGGGGT+GGG	+	chr1_3:75641093-75641112	Msa0140960:CDS	30.0%
TGAAGCTGTGAATGATAAAA+CGG	+	chr1_3:75641155-75641174	Msa0140960:CDS	30.0%
ATAAGCAAAGCTGTAAATGA+TGG	+	chr1_3:75641222-75641241	Msa0140960:CDS	30.0%
TAAGCAAAGCTGTAAATGAT+GGG	+	chr1_3:75641223-75641242	Msa0140960:CDS	30.0%
TATGATATGTCGAGTTCAAA+AGG	+	chr1_3:75641807-75641826	Msa0140960:CDS	30.0%
TGTACCTATGATTCCAAAAT+GGG	+	chr1_3:75641931-75641950	Msa0140960:intron	30.0%
CATGTTAACTAGAATTGCAT+AGG	-	chr1_3:75642321-75642340	None:intergenic	30.0%
CATCAAAACAGAATAGATAC+CGG	-	chr1_3:75642505-75642524	None:intergenic	30.0%
ATTCTAAATATGCAGGACAT+AGG	-	chr1_3:75642572-75642591	None:intergenic	30.0%
TATGTCCTGCATATTTAGAA+TGG	+	chr1_3:75642571-75642590	Msa0140960:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	75640883	75646168	75640883	ID=Msa0140960;Name=Msa0140960
chr1_3	mRNA	75640883	75646168	75640883	ID=Msa0140960-mRNA-1;Parent=Msa0140960;Name=Msa0140960-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0.5\|0.36\|1\|0.4\|0.18\|11\|354\|810
chr1_3	exon	75640883	75640994	75640883	ID=Msa0140960-mRNA-1:exon:26358;Parent=Msa0140960-mRNA-1
chr1_3	exon	75641010	75641250	75641010	ID=Msa0140960-mRNA-1:exon:26359;Parent=Msa0140960-mRNA-1
chr1_3	exon	75641269	75641465	75641269	ID=Msa0140960-mRNA-1:exon:26360;Parent=Msa0140960-mRNA-1
chr1_3	exon	75641481	75641705	75641481	ID=Msa0140960-mRNA-1:exon:26361;Parent=Msa0140960-mRNA-1
chr1_3	exon	75641712	75641887	75641712	ID=Msa0140960-mRNA-1:exon:26362;Parent=Msa0140960-mRNA-1
chr1_3	exon	75643010	75643189	75643010	ID=Msa0140960-mRNA-1:exon:26363;Parent=Msa0140960-mRNA-1
chr1_3	exon	75643283	75643444	75643283	ID=Msa0140960-mRNA-1:exon:26364;Parent=Msa0140960-mRNA-1
chr1_3	exon	75643493	75643618	75643493	ID=Msa0140960-mRNA-1:exon:26365;Parent=Msa0140960-mRNA-1
chr1_3	exon	75643998	75644087	75643998	ID=Msa0140960-mRNA-1:exon:26366;Parent=Msa0140960-mRNA-1
chr1_3	exon	75644185	75644229	75644185	ID=Msa0140960-mRNA-1:exon:26367;Parent=Msa0140960-mRNA-1
chr1_3	exon	75644936	75646168	75644936	ID=Msa0140960-mRNA-1:exon:26368;Parent=Msa0140960-mRNA-1
chr1_3	CDS	75640883	75640994	75640883	ID=Msa0140960-mRNA-1:cds;Parent=Msa0140960-mRNA-1
chr1_3	CDS	75641010	75641250	75641010	ID=Msa0140960-mRNA-1:cds;Parent=Msa0140960-mRNA-1
chr1_3	CDS	75641269	75641465	75641269	ID=Msa0140960-mRNA-1:cds;Parent=Msa0140960-mRNA-1
chr1_3	CDS	75641481	75641705	75641481	ID=Msa0140960-mRNA-1:cds;Parent=Msa0140960-mRNA-1
chr1_3	CDS	75641712	75641887	75641712	ID=Msa0140960-mRNA-1:cds;Parent=Msa0140960-mRNA-1
chr1_3	CDS	75643010	75643189	75643010	ID=Msa0140960-mRNA-1:cds;Parent=Msa0140960-mRNA-1
chr1_3	CDS	75643283	75643444	75643283	ID=Msa0140960-mRNA-1:cds;Parent=Msa0140960-mRNA-1
chr1_3	CDS	75643493	75643618	75643493	ID=Msa0140960-mRNA-1:cds;Parent=Msa0140960-mRNA-1
chr1_3	CDS	75643998	75644087	75643998	ID=Msa0140960-mRNA-1:cds;Parent=Msa0140960-mRNA-1
chr1_3	CDS	75644185	75644229	75644185	ID=Msa0140960-mRNA-1:cds;Parent=Msa0140960-mRNA-1
chr1_3	CDS	75644936	75645814	75644936	ID=Msa0140960-mRNA-1:cds;Parent=Msa0140960-mRNA-1
chr1_3	three_prime_UTR	75645815	75646168	75645815	ID=Msa0140960-mRNA-1:three_prime_utr;Parent=Msa0140960-mRNA-1

Gene Sequence

>Msa0140960

ATGGAAACTGATGAAGGAATGGAAAATTCTGGTAACACTGAATGTGTTGAAGGAGTACGGTGTTTGAAACGGAAAGCCATTGATGATGGGCTGCCAATTTCCAGTGGAAATGGTAGGCATTCAGAAAGTGAAGCTTTGAATGATGTGGCAGTGTTCGCGGATGGAAGTAGTGTTGCTGACGTGGCCGAGGTTTTGAAAAGTTTGAAAAATGGGGTGGGTGGAAATTGTGTTGCTGAAGAGGCTCGAGAATGGATAAGTGAAGCTGTGAATGATAAAACGGTGGTTGCAAATGGAAAATGTGTTGCCGAAGAAGCTCGAGAATTGATAAGCAAAGCTGTAAATGATGGGGCAGTTGTTGCTGATGTAGCTGAGGTTTTGAAAAGTTTGAGTAATGGGGTGAATGGAAATTGTGTTGCTGAAGAGGCTCGAGAATCGATAAGCGAAGCTGTGAATGATAGAACAGTGGTTGCAAATGGAAATTGTGTTACTGAAGAGGCTCGAGAATCGACAAGTGAAGCTGTGAATGATGGGGCGGTGACTGTGAATGGAAAGGCTCGAGAATTGATAAGTGAAGCTGTGAATGATGGGGCGATATTTTCGAATGGAAATGGTGTTAATGAAGAGGTTGGAGTCTTGAAAAGTGAAGCTTTGAATGATGGGGTGGTGTTTTCAAATGGAAATGGGGTTGCTGAAGTGCCTGTAGTTTTAAAAAGTGATGTTTTGAATAATGGGGTGAATGGAAATGGTGTTACTGAAGAGGCTGGAGTCTTGAAAAGCGTTAGCAATGGGGTGGCAAGTTCAGGCGGGTTTGATTCTGGTGATGGGGGCTCTGGTGGAGTGACGTGTCTTCGAACTTATAAAAGGCGAAAGTATGATATGTCGAGTTCAAAAGGCAAAGCGCAGGAGGATTGTGGAAAACGCGTGGAAACTGCGAGTCATATAGCAGACCAGGTTGTGAAGGAACCCTTAGATGCAACTTTAGGCAATACTGCAGATGCTTGCGCCCATAGACATTGGGGAAACGTGGTACTAAAACAGTTATACCAGTCATTAGGCAATAGCAACGGTGGCATAAAGGGGTGCATAGGGGAAGCACTAATTCGACATCAAAGTTGTGCCACTACAGTTATGCAGGGAACTTCTAAAATTGGCAAAGATGGACAAGAATTCTCTTCACAATTTGATCGTTTATCTCATAGAACACGAACTGAAGCTAATGGGCATGCAGATGTCATGCAAAATGGATCTTCTAGTGAACCACATGGCCATGGTGTGACTGAGATGTGTCAGCGTGTTTTATTTGATAATTTCCAATCAACGAAGCCGGAAAGAATATTTGATTTTAGTGTCATAACCTTAAGGATGAAGCAGAAAGTCTATGAACAATCACCTGCACTTTTCTTGTCAGATATTCAACAGGTCTTTGGAAAGCTTCAAGATACATTTAAGGAAATTGTTGCTCTTTCTAATAGCCTTTCCAATTTATCAACAGATTCCTACTCTAAGCTGGTTGGAATTTCAGTGCAGAGCACATTTGAAGATGAAAAACAAGTGGAATTGGACTCTCACATGAAACCGGAGCAAACGGAAGAATGTGCTGGTTGCAGTAGTTGTGGAGAAAGGGCAGATGGCACAGATTGTTTGGTCTGTGATTCATGTGAGAAGGTGTACCATTTGTCCTGTATTGAGCTTGCAGTTAATGAAATACCTCACAAAAGCTGGTATTGTGCTAATTGCACCAAAAGTGGCTTTGGTTCTCCGCATGAAAATTGTGTAGTATGTGCGAGGTTGAACGACACAAAGACGCCCAAGAAAATAATTGGTGATGAAAGCCTCCCTACAAATGAGGAAACACTTGATGAATTTGATGATAATTCAAATGACAGCTATGATGGGATTCAAATATCTACAGGTGGAAGAGAAAAAGCCAGTTGCAAAGTGTGTGGAAATGAAGTCGAAATCAAAGGTGAAAAAATAAGAATATGTGGTCACCCTTTTTGTCCAAGTAAATACTACCATGCAAGGTGTTTGACAAGCAAGCAATTAAATTCATATGGCTATTGGTGGTACTGCCCTTCTTGTATATGCCAAGTTTGTTTCACCGATCAAGATGATTCACAGATTGTCCTCTGTGATGGCTGCGATCATGCATATCACATCTATTGCATGAAGCCTCCACTGGATTCTATTCCACAAGGGAAATGGTTCTGCAGAAAATGTGATGCTGGAATCAAGGCAATATCCCAGGCAAAAAAAGCGTACGAGAGTAACAAGCTGAGAACCGGTGAATATGTTTCAAAGCCAAATGCTAATAACAACTGCAACAGTAAATTTGTAGAAGAATTGGAAAGTTGTGGTGGAATGGACATGCTTTTAACTGCGGCCAATTCTCTGAATTTTGAAGAGAATTTGGCCGAAAACCAGTTTGAGTAG

Protein sequence

>Msa0140960

METDEGMENSGNTECVEGVRCLKRKAIDDGLPISSGNGRHSESEALNDVAVFADGSSVADVAEVLKSLKNGVGGNCVAEEAREWISEAVNDKTVVANGKCVAEEARELISKAVNDGAVVADVAEVLKSLSNGVNGNCVAEEARESISEAVNDRTVVANGNCVTEEARESTSEAVNDGAVTVNGKARELISEAVNDGAIFSNGNGVNEEVGVLKSEALNDGVVFSNGNGVAEVPVVLKSDVLNNGVNGNGVTEEAGVLKSVSNGVASSGGFDSGDGGSGGVTCLRTYKRRKYDMSSSKGKAQEDCGKRVETASHIADQVVKEPLDATLGNTADACAHRHWGNVVLKQLYQSLGNSNGGIKGCIGEALIRHQSCATTVMQGTSKIGKDGQEFSSQFDRLSHRTRTEANGHADVMQNGSSSEPHGHGVTEMCQRVLFDNFQSTKPERIFDFSVITLRMKQKVYEQSPALFLSDIQQVFGKLQDTFKEIVALSNSLSNLSTDSYSKLVGISVQSTFEDEKQVELDSHMKPEQTEECAGCSSCGERADGTDCLVCDSCEKVYHLSCIELAVNEIPHKSWYCANCTKSGFGSPHENCVVCARLNDTKTPKKIIGDESLPTNEETLDEFDDNSNDSYDGIQISTGGREKASCKVCGNEVEIKGEKIRICGHPFCPSKYYHARCLTSKQLNSYGYWWYCPSCICQVCFTDQDDSQIVLCDGCDHAYHIYCMKPPLDSIPQGKWFCRKCDAGIKAISQAKKAYESNKLRTGEYVSKPNANNNCNSKFVEELESCGGMDMLLTAANSLNFEENLAENQFE*