AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene033897

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033897.t1 MTR_2g048140 91.028 457 40 1 1 457 1 456 0.0 853
MS.gene033897.t1 MTR_1g090907 80.525 457 87 2 1 457 1 455 0.0 739
MS.gene033897.t1 MTR_1g090903 59.091 462 133 6 1 457 1 411 6.78e-175 496
MS.gene033897.t1 MTR_3g448340 37.149 463 270 11 5 454 4 458 1.10e-83 265
MS.gene033897.t1 MTR_5g080150 35.468 406 222 7 5 404 3 374 2.51e-68 223
MS.gene033897.t1 MTR_3g049530 30.353 481 236 14 5 455 4 415 1.11e-47 169
MS.gene033897.t1 MTR_1g071060 72.222 90 25 0 40 129 7 96 9.25e-38 133
MS.gene033897.t1 MTR_7g029260 37.931 116 71 1 314 428 44 159 7.67e-18 82.8
MS.gene033897.t1 MTR_2g047858 24.355 349 211 15 20 353 128 438 5.34e-15 77.4
MS.gene033897.t1 MTR_8g468810 24.160 476 303 18 5 457 23 463 4.74e-14 74.3
MS.gene033897.t1 MTR_1g016310 25.316 316 178 14 20 318 33 307 1.23e-12 69.3
MS.gene033897.t1 MTR_1g021825 25.346 434 248 21 10 423 20 397 1.70e-12 69.3
MS.gene033897.t1 MTR_1g021825 25.346 434 248 21 10 423 91 468 1.81e-12 69.7
MS.gene033897.t1 MTR_2g072530 26.446 121 84 2 7 127 13 128 2.76e-12 68.9
MS.gene033897.t1 MTR_1g016310 25.397 315 177 14 20 317 33 306 2.85e-12 68.9
MS.gene033897.t1 MTR_8g058970 23.108 489 314 20 4 457 16 477 3.26e-12 68.6
MS.gene033897.t1 MTR_8g468810 26.625 323 202 12 5 313 23 324 4.24e-12 67.8
MS.gene033897.t1 MTR_6g018660 24.444 360 216 14 16 346 29 361 2.05e-11 65.9
MS.gene033897.t1 MTR_8g468810 26.730 318 194 12 5 301 23 322 2.21e-11 65.5
MS.gene033897.t1 MTR_2g072720 25.282 443 269 20 20 435 52 459 2.21e-11 66.2
MS.gene033897.t1 MTR_8g062270 23.769 467 303 18 4 444 13 452 2.28e-11 65.9
MS.gene033897.t1 MTR_8g468810 26.667 315 196 12 5 305 23 316 4.14e-11 64.7
MS.gene033897.t1 MTR_8g468810 27.018 285 176 11 5 275 23 289 5.52e-11 63.9
MS.gene033897.t1 MTR_0049s0110 28.745 247 132 11 7 251 8 212 6.17e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033897.t1 AT1G56400 32.203 413 257 10 16 414 22 425 2.35e-59 202
MS.gene033897.t1 AT5G54820 30.193 467 294 13 9 454 9 464 1.87e-57 197
MS.gene033897.t1 AT3G29830 32.196 469 273 18 10 454 11 458 9.39e-56 192
MS.gene033897.t1 AT3G29830 31.557 469 277 17 10 454 11 459 4.68e-54 187
MS.gene033897.t1 AT3G62230 28.806 427 286 13 6 422 7 425 1.12e-48 173
MS.gene033897.t1 AT1G56400 32.378 349 213 9 80 414 45 384 3.35e-47 169
MS.gene033897.t1 AT2G17305 30.723 166 107 4 296 456 106 268 5.78e-20 90.1
MS.gene033897.t1 AT1G61330 27.078 373 233 13 6 361 9 359 7.76e-19 89.0
MS.gene033897.t1 AT3G28410 24.444 405 246 18 4 392 25 385 7.46e-14 73.9
MS.gene033897.t1 AT3G59200 24.566 403 215 18 1 355 4 365 1.68e-11 65.9
MS.gene033897.t1 AT3G50710 23.667 469 299 18 6 457 1 427 1.77e-11 66.2
MS.gene033897.t1 AT3G59200 25.000 404 208 19 1 353 4 363 4.53e-11 65.5
MS.gene033897.t1 AT5G02930 23.901 364 215 12 16 353 37 364 5.80e-11 64.7

Find 75 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAATACTTCAAATATTC+TGG 0.116778 2.2:-38968323 MS.gene033897:CDS
AAATCGTTATCTTCCCATTT+TGG 0.155222 2.2:+38968671 None:intergenic
TTGATTTCTCTGATCCAAAA+TGG 0.187141 2.2:-38968685 MS.gene033897:CDS
TTGAAGGTGGTAGAAGTAAT+TGG 0.250226 2.2:-38967551 MS.gene033897:CDS
TTTCTTAAGGTCTACATCAT+AGG 0.276079 2.2:+38967619 None:intergenic
TGCACTCAAAGACTTATCTT+TGG 0.307976 2.2:-38968531 MS.gene033897:CDS
TTACTTCAGATATAAATGTT+AGG 0.319721 2.2:-38968292 MS.gene033897:CDS
TCCCTAGCCGCGGCATTAAC+AGG 0.323207 2.2:-38968802 MS.gene033897:CDS
CGGAGAAATCATGAAGGATT+TGG 0.330294 2.2:+38968201 None:intergenic
TATTTGAAGTATTTAAGATT+TGG 0.333013 2.2:+38968329 None:intergenic
GAGTTTGGCGAACTTTGATT+TGG 0.334865 2.2:-38968423 MS.gene033897:CDS
CTTCAATGAAAACTTCTTTG+TGG 0.359992 2.2:-38968900 MS.gene033897:CDS
GAGTTTGCCAATATTTCTTA+AGG 0.366672 2.2:+38967606 None:intergenic
TTAAATACTTCAAATATTCT+GGG 0.378687 2.2:-38968322 MS.gene033897:CDS
TGTTGCTTTCGCGATACAAC+GGG 0.386792 2.2:-38968726 MS.gene033897:CDS
TGTTCTTGTTGTGGCTTCTT+CGG 0.387969 2.2:+38968976 None:intergenic
ATGCATCAATATGAACTTTG+TGG 0.395344 2.2:-38967839 MS.gene033897:CDS
AGTCATAAGTTCTTCGTTTG+TGG 0.396856 2.2:+38967520 None:intergenic
ATGTAGACCTTAAGAAATAT+TGG 0.398156 2.2:-38967613 MS.gene033897:CDS
GCACCAAAGTTCAGAAAATC+TGG 0.415045 2.2:+38968551 None:intergenic
ATATATTAGGTCGTTCCATC+TGG 0.419959 2.2:-38967923 MS.gene033897:intron
GCACTCAAAGACTTATCTTT+GGG 0.421361 2.2:-38968530 MS.gene033897:CDS
ATGCTTGAAAAGTACTTTGA+AGG 0.422530 2.2:-38967567 MS.gene033897:CDS
AGTTTGGCGAACTTTGATTT+GGG 0.426475 2.2:-38968422 MS.gene033897:CDS
TACTTCAGATATAAATGTTA+GGG 0.428980 2.2:-38968291 MS.gene033897:CDS
TCTTGAGAAGTGCTGGAGTT+TGG 0.442130 2.2:-38968438 MS.gene033897:CDS
AGTTTGCAGTTATCTACTTC+AGG 0.450619 2.2:-38968162 MS.gene033897:intron
TTCTTAAGGTCTACATCATA+GGG 0.458742 2.2:+38967620 None:intergenic
GTTTGAGTCTTGAGAAGTGC+TGG 0.462541 2.2:-38968445 MS.gene033897:CDS
ACTGCAAACTGTTAGAATCT+TGG 0.462543 2.2:+38968175 None:intergenic
CGTTCCATCTGGAGATGAAC+CGG 0.463128 2.2:-38967912 MS.gene033897:CDS
TTGAATCGCTAAAACTGTAT+TGG 0.463419 2.2:-38968589 MS.gene033897:CDS
TGATTTCTCTGATCCAAAAT+GGG 0.463607 2.2:-38968684 MS.gene033897:CDS
ACCACTTGGATTAACAAGAT+TGG 0.469749 2.2:-38968393 MS.gene033897:CDS
ACCTGTTAATGCCGCGGCTA+GGG 0.471379 2.2:+38968801 None:intergenic
TTGTTTCCCCACAAGTTTGA+GGG 0.476639 2.2:+38968759 None:intergenic
TAGTCCACAAGTTATATTTG+AGG 0.479854 2.2:-38967762 MS.gene033897:intron
CCAACGCATGTTTATCAACT+CGG 0.480761 2.2:-38968620 MS.gene033897:CDS
CTTTGTGGATTCAACTTCTG+AGG 0.481713 2.2:-38968885 MS.gene033897:CDS
CTTGTTGTGGCTTCTTCGGA+GGG 0.484040 2.2:+38968980 None:intergenic
TCATCAACTTTATTACAACT+TGG 0.486279 2.2:-38968835 MS.gene033897:CDS
GAAATGATTGCAAGAAGAAG+TGG 0.494008 2.2:+38969010 None:intergenic
TTCCATGTTATCTCTTGCCA+TGG 0.494876 2.2:+38969054 None:intergenic
ACTTGTTGCTTTCTTATGCA+AGG 0.514283 2.2:-38967500 MS.gene033897:CDS
AAGGATAGATGTTCTTGTTG+TGG 0.519897 2.2:+38968967 None:intergenic
TCTTGTTGTGGCTTCTTCGG+AGG 0.529075 2.2:+38968979 None:intergenic
TTGTGGCTTCTTCGGAGGGT+AGG 0.530760 2.2:+38968984 None:intergenic
AAAGCACTTTGCATCTTCAC+CGG 0.532263 2.2:+38967893 None:intergenic
CAAACTTTCAATCGTCCGAC+AGG 0.533228 2.2:+38968463 None:intergenic
ATTGTTTCCCCACAAGTTTG+AGG 0.540471 2.2:+38968758 None:intergenic
AACAGATTAATATTAAGTTG+TGG 0.543730 2.2:-38967466 MS.gene033897:CDS
AACCTGTTAATGCCGCGGCT+AGG 0.547285 2.2:+38968800 None:intergenic
GTGTTGCTTTCGCGATACAA+CGG 0.552369 2.2:-38968727 MS.gene033897:CDS
TCAAAGACTTATCTTTGGGT+CGG 0.555960 2.2:-38968526 MS.gene033897:CDS
GCAAACTGTTAGAATCTTGG+CGG 0.561620 2.2:+38968178 None:intergenic
ACTTGGATTAACAAGATTGG+TGG 0.562210 2.2:-38968390 MS.gene033897:CDS
AACCATGGCAAGAGATAACA+TGG 0.562222 2.2:-38969056 None:intergenic
ACCAATCTTGTTAATCCAAG+TGG 0.566249 2.2:+38968392 None:intergenic
CTTGAAAAGTACTTTGAAGG+TGG 0.570692 2.2:-38967564 MS.gene033897:CDS
TAAATACTTCAAATATTCTG+GGG 0.577798 2.2:-38968321 MS.gene033897:CDS
AAATGTTAGGGCTATAGAAG+AGG 0.577818 2.2:-38968279 MS.gene033897:CDS
AACTGTTAGAATCTTGGCGG+CGG 0.578443 2.2:+38968181 None:intergenic
CCGAGTTGATAAACATGCGT+TGG 0.591872 2.2:+38968620 None:intergenic
CTGACCTCAAATATAACTTG+TGG 0.595453 2.2:+38967758 None:intergenic
TTTGAACCCTCAAACTTGTG+GGG 0.613300 2.2:-38968765 MS.gene033897:CDS
AAAGATTGTTATCAACCTGT+CGG 0.616508 2.2:-38968478 MS.gene033897:CDS
GATTTGGGAGATGAACCACT+TGG 0.617804 2.2:-38968407 MS.gene033897:CDS
ATCACACACTTCCCTAGCCG+CGG 0.654787 2.2:-38968812 MS.gene033897:CDS
TTCACCGGTTCATCTCCAGA+TGG 0.661858 2.2:+38967908 None:intergenic
GAGAAAACCTGTTAATGCCG+CGG 0.665328 2.2:+38968795 None:intergenic
TCGCTAAAACTGTATTGGTG+TGG 0.670269 2.2:-38968584 MS.gene033897:CDS
TGGCGGCGGAGAAATCATGA+AGG 0.685071 2.2:+38968195 None:intergenic
GAATCAGAATTCAATGAACG+TGG 0.690987 2.2:-38968236 MS.gene033897:CDS
GTTGCTTTCGCGATACAACG+GGG 0.735844 2.2:-38968725 MS.gene033897:CDS
GATAAAGAAGAATTTCGACG+TGG 0.771620 2.2:-38967431 MS.gene033897:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATACATATATAATATATT+AGG - chr2.2:38968483-38968502 MS.gene033897:CDS 10.0%
!! TTAAATACTTCAAATATTCT+GGG - chr2.2:38968097-38968116 MS.gene033897:intron 15.0%
!!! TATTTGAAGTATTTAAGATT+TGG + chr2.2:38968093-38968112 None:intergenic 15.0%
!! CTTAAATACTTCAAATATTC+TGG - chr2.2:38968096-38968115 MS.gene033897:intron 20.0%
!! TAAATACTTCAAATATTCTG+GGG - chr2.2:38968098-38968117 MS.gene033897:intron 20.0%
!! TACTTCAGATATAAATGTTA+GGG - chr2.2:38968128-38968147 MS.gene033897:intron 20.0%
!! TAGTCATTGATATAGTTATA+TGG - chr2.2:38968736-38968755 MS.gene033897:CDS 20.0%
!! TTACTTCAGATATAAATGTT+AGG - chr2.2:38968127-38968146 MS.gene033897:intron 20.0%
!!! AACAGATTAATATTAAGTTG+TGG - chr2.2:38968953-38968972 MS.gene033897:CDS 20.0%
! AATGTCGGAAGTAAATTAAT+AGG + chr2.2:38968314-38968333 None:intergenic 25.0%
! ATGTAGACCTTAAGAAATAT+TGG - chr2.2:38968806-38968825 MS.gene033897:CDS 25.0%
! TCATCAACTTTATTACAACT+TGG - chr2.2:38967584-38967603 MS.gene033897:CDS 25.0%
! TGTTTGCTTGTATATATTAC+AGG - chr2.2:38968765-38968784 MS.gene033897:CDS 25.0%
!! TTCCGACATTGATTAAATAT+GGG - chr2.2:38968324-38968343 MS.gene033897:CDS 25.0%
!!! CCATATCTTTAACCATTTTT+CGG + chr2.2:38967479-38967498 None:intergenic 25.0%
AAAGATTGTTATCAACCTGT+CGG - chr2.2:38967941-38967960 MS.gene033897:intron 30.0%
ATGCATCAATATGAACTTTG+TGG - chr2.2:38968580-38968599 MS.gene033897:CDS 30.0%
ATTGCTTGAAAAACTCACAT+TGG - chr2.2:38968630-38968649 MS.gene033897:CDS 30.0%
CCGAAAAATGGTTAAAGATA+TGG - chr2.2:38967476-38967495 MS.gene033897:CDS 30.0%
CTTCAATGAAAACTTCTTTG+TGG - chr2.2:38967519-38967538 MS.gene033897:CDS 30.0%
GAGTTTGCCAATATTTCTTA+AGG + chr2.2:38968816-38968835 None:intergenic 30.0%
TAGTCCACAAGTTATATTTG+AGG - chr2.2:38968657-38968676 MS.gene033897:CDS 30.0%
TGATTTCTCTGATCCAAAAT+GGG - chr2.2:38967735-38967754 MS.gene033897:intron 30.0%
TTCTTAAGGTCTACATCATA+GGG + chr2.2:38968802-38968821 None:intergenic 30.0%
TTGAATCGCTAAAACTGTAT+TGG - chr2.2:38967830-38967849 MS.gene033897:CDS 30.0%
TTGATTTCTCTGATCCAAAA+TGG - chr2.2:38967734-38967753 MS.gene033897:intron 30.0%
TTTCTTAAGGTCTACATCAT+AGG + chr2.2:38968803-38968822 None:intergenic 30.0%
! AAATCGTTATCTTCCCATTT+TGG + chr2.2:38967751-38967770 None:intergenic 30.0%
! ACTTTTAGTCAAAGCTCAAA+AGG - chr2.2:38969020-38969039 MS.gene033897:CDS 30.0%
! ATTGAAGTCGATGTTTTCTT+CGG + chr2.2:38967506-38967525 None:intergenic 30.0%
! CTTCCGACATTGATTAAATA+TGG - chr2.2:38968323-38968342 MS.gene033897:CDS 30.0%
! CTTTTAGTCAAAGCTCAAAA+GGG - chr2.2:38969021-38969040 MS.gene033897:CDS 30.0%
! TCCGACATTGATTAAATATG+GGG - chr2.2:38968325-38968344 MS.gene033897:CDS 30.0%
! TTAGTTGGCATGAATTTTGT+GGG - chr2.2:38968357-38968376 MS.gene033897:CDS 30.0%
! TTTAGTTGGCATGAATTTTG+TGG - chr2.2:38968356-38968375 MS.gene033897:CDS 30.0%
!! AAAGTACTTTTCAAGCATTG+AGG + chr2.2:38968850-38968869 None:intergenic 30.0%
!! ATGCTTGAAAAGTACTTTGA+AGG - chr2.2:38968852-38968871 MS.gene033897:CDS 30.0%
!! TCTTTAACCATTTTTCGGTA+AGG + chr2.2:38967474-38967493 None:intergenic 30.0%
!!! AATGTGAGTTTTTCAAGCAA+TGG + chr2.2:38968631-38968650 None:intergenic 30.0%
!!! ATGTGAGTTTTTCAAGCAAT+GGG + chr2.2:38968630-38968649 None:intergenic 30.0%
AAATGTTAGGGCTATAGAAG+AGG - chr2.2:38968140-38968159 MS.gene033897:intron 35.0%
AAGGATAGATGTTCTTGTTG+TGG + chr2.2:38967455-38967474 None:intergenic 35.0%
ACCAATCTTGTTAATCCAAG+TGG + chr2.2:38968030-38968049 None:intergenic 35.0%
ACCACTTGGATTAACAAGAT+TGG - chr2.2:38968026-38968045 MS.gene033897:intron 35.0%
ACTGCAAACTGTTAGAATCT+TGG + chr2.2:38968247-38968266 None:intergenic 35.0%
ACTTGGATTAACAAGATTGG+TGG - chr2.2:38968029-38968048 MS.gene033897:intron 35.0%
AGTCATAAGTTCTTCGTTTG+TGG + chr2.2:38968902-38968921 None:intergenic 35.0%
AGTTTGCAGTTATCTACTTC+AGG - chr2.2:38968257-38968276 MS.gene033897:CDS 35.0%
ATATATTAGGTCGTTCCATC+TGG - chr2.2:38968496-38968515 MS.gene033897:CDS 35.0%
CATCTATCCTTACCGAAAAA+TGG - chr2.2:38967464-38967483 MS.gene033897:CDS 35.0%
CTGACCTCAAATATAACTTG+TGG + chr2.2:38968664-38968683 None:intergenic 35.0%
GAAATGATTGCAAGAAGAAG+TGG + chr2.2:38967412-38967431 None:intergenic 35.0%
GAATCAGAATTCAATGAACG+TGG - chr2.2:38968183-38968202 MS.gene033897:CDS 35.0%
GATAAAGAAGAATTTCGACG+TGG - chr2.2:38968988-38969007 MS.gene033897:CDS 35.0%
GCACTCAAAGACTTATCTTT+GGG - chr2.2:38967889-38967908 MS.gene033897:CDS 35.0%
GCCCCATATTTAATCAATGT+CGG + chr2.2:38968329-38968348 None:intergenic 35.0%
TCAAAGACTTATCTTTGGGT+CGG - chr2.2:38967893-38967912 MS.gene033897:CDS 35.0%
TGCACTCAAAGACTTATCTT+TGG - chr2.2:38967888-38967907 MS.gene033897:CDS 35.0%
TGTGACTGTAGCAAAATTGT+TGG - chr2.2:38968428-38968447 MS.gene033897:CDS 35.0%
TTGAAGGTGGTAGAAGTAAT+TGG - chr2.2:38968868-38968887 MS.gene033897:CDS 35.0%
! AGTTTGGCGAACTTTGATTT+GGG - chr2.2:38967997-38968016 MS.gene033897:intron 35.0%
! ATGGGGCTAGTATATTTAGT+TGG - chr2.2:38968342-38968361 MS.gene033897:CDS 35.0%
! CATTAACAGGTTTTCTCTCA+CGG - chr2.2:38967630-38967649 MS.gene033897:CDS 35.0%
! TGGGAAGATAACGATTTTGA+TGG - chr2.2:38967754-38967773 MS.gene033897:intron 35.0%
! TTTTGAACCCTCAAACTTGT+GGG - chr2.2:38967653-38967672 MS.gene033897:intron 35.0%
!! ACTTGTTGCTTTCTTATGCA+AGG - chr2.2:38968919-38968938 MS.gene033897:CDS 35.0%
!! CTTGAAAAGTACTTTGAAGG+TGG - chr2.2:38968855-38968874 MS.gene033897:CDS 35.0%
ATTGTTTCCCCACAAGTTTG+AGG + chr2.2:38967664-38967683 None:intergenic 40.0%
CCAACGCATGTTTATCAACT+CGG - chr2.2:38967799-38967818 MS.gene033897:CDS 40.0%
CGGAGAAATCATGAAGGATT+TGG + chr2.2:38968221-38968240 None:intergenic 40.0%
CTTTGTGGATTCAACTTCTG+AGG - chr2.2:38967534-38967553 MS.gene033897:CDS 40.0%
GAGTTTGGCGAACTTTGATT+TGG - chr2.2:38967996-38968015 MS.gene033897:intron 40.0%
GCAAACTGTTAGAATCTTGG+CGG + chr2.2:38968244-38968263 None:intergenic 40.0%
GCACCAAAGTTCAGAAAATC+TGG + chr2.2:38967871-38967890 None:intergenic 40.0%
TTGTTTCCCCACAAGTTTGA+GGG + chr2.2:38967663-38967682 None:intergenic 40.0%
TTTGAACCCTCAAACTTGTG+GGG - chr2.2:38967654-38967673 MS.gene033897:intron 40.0%
! AAAGCACTTTGCATCTTCAC+CGG + chr2.2:38968529-38968548 None:intergenic 40.0%
! ACGCCAGATTTTCTGAACTT+TGG - chr2.2:38967865-38967884 MS.gene033897:CDS 40.0%
! TCGCTAAAACTGTATTGGTG+TGG - chr2.2:38967835-38967854 MS.gene033897:CDS 40.0%
! TGTTCTTGTTGTGGCTTCTT+CGG + chr2.2:38967446-38967465 None:intergenic 40.0%
!! GTTTTGAACCCTCAAACTTG+TGG - chr2.2:38967652-38967671 MS.gene033897:intron 40.0%
AACTGTTAGAATCTTGGCGG+CGG + chr2.2:38968241-38968260 None:intergenic 45.0%
CAAACTTTCAATCGTCCGAC+AGG + chr2.2:38967959-38967978 None:intergenic 45.0%
GAGAAAACCTGTTAATGCCG+CGG + chr2.2:38967627-38967646 None:intergenic 45.0%
GATTTGGGAGATGAACCACT+TGG - chr2.2:38968012-38968031 MS.gene033897:intron 45.0%
! GTTTGAGTCTTGAGAAGTGC+TGG - chr2.2:38967974-38967993 MS.gene033897:intron 45.0%
!! CCGAGTTGATAAACATGCGT+TGG + chr2.2:38967802-38967821 None:intergenic 45.0%
!! GTGTTGCTTTCGCGATACAA+CGG - chr2.2:38967692-38967711 MS.gene033897:intron 45.0%
!! TCTTGAGAAGTGCTGGAGTT+TGG - chr2.2:38967981-38968000 MS.gene033897:intron 45.0%
!! TGTTGCTTTCGCGATACAAC+GGG - chr2.2:38967693-38967712 MS.gene033897:intron 45.0%
CGTTCCATCTGGAGATGAAC+CGG - chr2.2:38968507-38968526 MS.gene033897:CDS 50.0%
! CTTGTTGTGGCTTCTTCGGA+GGG + chr2.2:38967442-38967461 None:intergenic 50.0%
! GTTGCTTTCGCGATACAACG+GGG - chr2.2:38967694-38967713 MS.gene033897:intron 50.0%
! TCTTGTTGTGGCTTCTTCGG+AGG + chr2.2:38967443-38967462 None:intergenic 50.0%
!! TTCACCGGTTCATCTCCAGA+TGG + chr2.2:38968514-38968533 None:intergenic 50.0%
AACCTGTTAATGCCGCGGCT+AGG + chr2.2:38967622-38967641 None:intergenic 55.0%
ACCTGTTAATGCCGCGGCTA+GGG + chr2.2:38967621-38967640 None:intergenic 55.0%
ATCACACACTTCCCTAGCCG+CGG - chr2.2:38967607-38967626 MS.gene033897:CDS 55.0%
TGGCGGCGGAGAAATCATGA+AGG + chr2.2:38968227-38968246 None:intergenic 55.0%
TTGTGGCTTCTTCGGAGGGT+AGG + chr2.2:38967438-38967457 None:intergenic 55.0%
TCCCTAGCCGCGGCATTAAC+AGG - chr2.2:38967617-38967636 MS.gene033897:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 38967367 38969074 38967367 ID=MS.gene033897
chr2.2 mRNA 38967367 38969074 38967367 ID=MS.gene033897.t1;Parent=MS.gene033897
chr2.2 exon 38968163 38969074 38968163 ID=MS.gene033897.t1.exon1;Parent=MS.gene033897.t1
chr2.2 CDS 38968163 38969074 38968163 ID=cds.MS.gene033897.t1;Parent=MS.gene033897.t1
chr2.2 exon 38967763 38967936 38967763 ID=MS.gene033897.t1.exon2;Parent=MS.gene033897.t1
chr2.2 CDS 38967763 38967936 38967763 ID=cds.MS.gene033897.t1;Parent=MS.gene033897.t1
chr2.2 exon 38967367 38967654 38967367 ID=MS.gene033897.t1.exon3;Parent=MS.gene033897.t1
chr2.2 CDS 38967367 38967654 38967367 ID=cds.MS.gene033897.t1;Parent=MS.gene033897.t1
Gene Sequence

>MS.gene033897

ATGGCAAGAGATAACATGGAATTGTTTTCTTCGATACTAAAACCACTTCTTCTTGCAATCATTTCTTTCCTACCCTCCGAAGAAGCCACAACAAGAACATCTATCCTTACCGAAAAATGGTTAAAGATATGGCAGTCCGAAGAAAACATCGACTTCAATGAAAACTTCTTTGTGGATTCAACTTCTGAGGAAAACAAACAAGAACAAAGAAAAGTTTTCATCAACTTTATTACAACTTGGATCACACACTTCCCTAGCCGCGGCATTAACAGGTTTTCTCTCACGGTTTTGAACCCTCAAACTTGTGGGGAAACAATTGAGCAGTGTGTTGCTTTCGCGATACAACGGGGCGTGAAAGAGTTAATTCTTGATTTCTCTGATCCAAAATGGGAAGATAACGATTTTGATGGTAAACATGCGTTGTTTCAATTGCCAACGCATGTTTATCAACTCGGATTGTCGCTTGAATCGCTAAAACTGTATTGGTGTGGTTTCAATACGCCAGATTTTCTGAACTTTGGTGCACTCAAAGACTTATCTTTGGGTCGGATTGAAGTTAAAATCGAAACTCTAAAAAGATTGTTATCAACCTGTCGGACGATTGAAAGTTTGAGTCTTGAGAAGTGCTGGAGTTTGGCGAACTTTGATTTGGGAGATGAACCACTTGGATTAACAAGATTGGTGGTAAACAAGTGTGATTCTGAGTATTTCATATTTAATGCACCAAATCTTAAATACTTCAAATATTCTGGGGTTGTGTTTACTTCAGATATAAATGTTAGGGCTATAGAAGAGGTAGACATTGATTTTTCTCTAGAATCAGAATTCAATGAACGTGGTAATGAACTCTGCCAAATCCTTCATGATTTCTCCGCCGCCAAGATTCTAACAGTTTGCAGTTATCTACTTCAGGTACTCTTTTAATTAATTTCTCGTTATTTGCACCTATTAATTTACTTCCGACATTGATTAAATATGGGGCTAGTATATTTAGTTGGCATGAATTTTGTGGGAGTATATATAAATTGATTTTACACTAAAATTCAATTTGAAGTTGTGATTGTGACTGTAGCAAAATTGTTGGTTTAATTTAATTTGCATTGATATCTTATATCGACATACATATATAATATATTAGGTCGTTCCATCTGGAGATGAACCGGTGAAGATGCAAAGTGCTTTGAATGTAAAACATTTGACTTTAAAGACTCAAATGCATCAATATGAACTTTGTGGATTTGAATTCATGCTCAACAGTTGCCCATTGCTTGAAAAACTCACATTGGACATTAGTCCACAAGTTATATTTGAGGTCAGTCAAATACTTTACATTTCATGTCTCTCAATTTTCTCTCAATTTTTAACATAGTAGTCATTGATATAGTTATATGGTTTGAATGTTTGCTTGTATATATTACAGGACTATACACTTCCCTATGATGTAGACCTTAAGAAATATTGGCAAACTCATCGAGTGTTTCCTCAATGCTTGAAAAGTACTTTGAAGGTGGTAGAAGTAATTGGATTGAGAGCCACAAACGAAGAACTTATGACTTGTTGCTTTCTTATGCAAGGAAAAGTTTTGAAACAGATTAATATTAAGTTGTGGAATGAAGATGATGATAAAGAAGAATTTCGACGTGGATGTGCACAACTTTTAGTCAAAGCTCAAAAGGGTTCAAAGAATTTGCAAATATCAATTGATTGA
Protein sequence

>MS.gene033897.t1

MARDNMELFSSILKPLLLAIISFLPSEEATTRTSILTEKWLKIWQSEENIDFNENFFVDSTSEENKQEQRKVFINFITTWITHFPSRGINRFSLTVLNPQTCGETIEQCVAFAIQRGVKELILDFSDPKWEDNDFDGKHALFQLPTHVYQLGLSLESLKLYWCGFNTPDFLNFGALKDLSLGRIEVKIETLKRLLSTCRTIESLSLEKCWSLANFDLGDEPLGLTRLVVNKCDSEYFIFNAPNLKYFKYSGVVFTSDINVRAIEEVDIDFSLESEFNERGNELCQILHDFSAAKILTVCSYLLQVVPSGDEPVKMQSALNVKHLTLKTQMHQYELCGFEFMLNSCPLLEKLTLDISPQVIFEDYTLPYDVDLKKYWQTHRVFPQCLKSTLKVVEVIGLRATNEELMTCCFLMQGKVLKQINIKLWNEDDDKEEFRRGCAQLLVKAQKGSKNLQISID