AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60525

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60525.t1 MTR_1g090907 90.570 456 42 1 1 456 1 455 0.0 848
MS.gene60525.t1 MTR_2g048140 82.057 457 80 2 1 456 1 456 0.0 760
MS.gene60525.t1 MTR_1g090903 61.269 457 130 4 1 456 1 411 0.0 531
MS.gene60525.t1 MTR_3g448340 37.740 469 258 13 5 453 4 458 7.24e-88 276
MS.gene60525.t1 MTR_5g080150 36.186 409 217 9 4 404 2 374 8.34e-70 227
MS.gene60525.t1 MTR_3g049530 30.913 482 233 17 4 454 3 415 2.00e-50 177
MS.gene60525.t1 MTR_1g071060 75.556 90 22 0 40 129 7 96 1.33e-40 140
MS.gene60525.t1 MTR_7g029260 35.714 126 80 1 304 428 34 159 1.83e-17 81.6
MS.gene60525.t1 MTR_8g468470 22.581 465 306 20 3 437 10 450 5.31e-13 71.2
MS.gene60525.t1 MTR_2g072720 26.096 456 274 21 7 434 39 459 4.58e-12 68.2
MS.gene60525.t1 MTR_8g468810 25.152 493 282 24 2 456 20 463 6.97e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60525.t1 AT5G54820 31.293 441 273 12 7 426 7 438 1.35e-60 205
MS.gene60525.t1 AT1G56400 29.832 476 288 13 7 445 13 479 1.06e-58 200
MS.gene60525.t1 AT3G29830 30.839 441 271 14 4 424 5 431 2.53e-52 183
MS.gene60525.t1 AT3G29830 30.365 438 278 13 4 424 5 432 1.15e-50 178
MS.gene60525.t1 AT3G62230 27.766 461 313 13 6 454 7 459 6.81e-50 176
MS.gene60525.t1 AT1G56400 30.123 405 237 12 78 445 43 438 3.75e-48 171
MS.gene60525.t1 AT2G17305 31.707 164 107 3 296 455 106 268 3.78e-19 87.4
MS.gene60525.t1 AT5G02920 27.155 232 139 7 1 231 22 224 3.50e-14 72.8
MS.gene60525.t1 AT3G58860 25.070 359 247 11 1 353 1 343 1.16e-13 73.2
MS.gene60525.t1 AT3G28410 21.750 400 263 13 4 392 25 385 3.76e-13 71.6
MS.gene60525.t1 AT5G02930 24.267 375 222 14 5 353 26 364 5.63e-13 71.2
MS.gene60525.t1 AT5G56410 30.159 252 146 12 14 248 10 248 5.54e-12 68.2
MS.gene60525.t1 AT5G56370 23.961 409 254 17 6 403 1 363 9.37e-12 67.0
MS.gene60525.t1 AT5G56370 23.961 409 254 17 6 403 1 363 9.37e-12 67.0
MS.gene60525.t1 AT3G58880 25.474 369 235 15 6 353 2 351 1.84e-11 66.2
MS.gene60525.t1 AT3G58930 23.629 474 295 21 6 438 1 448 2.35e-11 66.2
MS.gene60525.t1 AT3G58930 23.629 474 295 21 6 438 1 448 2.35e-11 66.2
MS.gene60525.t1 AT3G58930 23.629 474 295 21 6 438 1 448 2.35e-11 66.2
MS.gene60525.t1 AT1G61330 23.711 388 253 14 2 377 5 361 2.74e-11 65.9
MS.gene60525.t1 AT2G04230 25.472 424 255 19 5 407 11 394 2.77e-11 65.9

Find 78 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAATACTTCAAATATTC+TGG 0.116368 1.2:-68452901 MS.gene60525:CDS
TTGATTTCTCTGATCCTAAA+TGG 0.158820 1.2:-68453263 MS.gene60525:CDS
AAGTAGACCTTAAGAAATTT+TGG 0.209673 1.2:-68452190 MS.gene60525:CDS
AAATTGTTATCTTCCCATTT+AGG 0.210930 1.2:+68453249 None:intergenic
CGCAAATTCTTTGAACGCTT+TGG 0.247622 1.2:+68451963 None:intergenic
TCATCGACTTCATCAGAAAT+TGG 0.258502 1.2:-68453413 MS.gene60525:CDS
GAATTTGGCAAACTTTGATT+TGG 0.267542 1.2:-68453001 MS.gene60525:CDS
TCTTGAGAAATGTTGGAATT+TGG 0.269533 1.2:-68453016 MS.gene60525:CDS
AAAATTTGTTATCAACTTGT+AGG 0.276512 1.2:-68453056 MS.gene60525:CDS
TGCACTCAAAGATTTGTCTT+TGG 0.298466 1.2:-68453109 MS.gene60525:CDS
ATTGCAAGACGAAGTGATTC+TGG 0.309611 1.2:+68453594 None:intergenic
GCTCAAAAGCTGCCCATTGC+TGG 0.325341 1.2:-68452402 MS.gene60525:CDS
CGGAGAAATCATGAAGGATT+TGG 0.330294 1.2:+68452779 None:intergenic
TATTTGAAGTATTTAAGATT+TGG 0.333013 1.2:+68452907 None:intergenic
TAAATGGGAAGATAACAATT+TGG 0.344219 1.2:-68453247 MS.gene60525:CDS
ATTTCTTAAGGTCTACTTGA+TGG 0.344830 1.2:+68452195 None:intergenic
GCACTCAAAGATTTGTCTTT+GGG 0.346946 1.2:-68453108 MS.gene60525:CDS
TCTTATGCAAGGAAAAGTTT+TGG 0.354339 1.2:-68452066 MS.gene60525:CDS
GATAAGCCTGCGTTGGCAAT+TGG 0.370128 1.2:+68453205 None:intergenic
AGTCATAAGTTCTTCATTTG+TGG 0.376656 1.2:+68452097 None:intergenic
AATTTGGCAAACTTTGATTT+GGG 0.381661 1.2:-68453000 MS.gene60525:CDS
CTGTGCTTCTTTGATTTCAT+CGG 0.388843 1.2:+68453446 None:intergenic
TTAAATACTTCAAATATTCT+GGG 0.391463 1.2:-68452900 MS.gene60525:CDS
TGTTCTCCTTGCGGCTTCTT+CGG 0.394545 1.2:+68453554 None:intergenic
TTGAAGGTGGTAGAAGTAAT+CGG 0.408674 1.2:-68452128 MS.gene60525:CDS
GAGTTTGCCAAAATTTCTTA+AGG 0.408773 1.2:+68452183 None:intergenic
ATTGAAATTGATGTGGTCTT+CGG 0.409367 1.2:+68453494 None:intergenic
TTCAAATCCACAAAGCTCAT+AGG 0.414020 1.2:+68452430 None:intergenic
ATGCATCCCTATGAGCTTTG+TGG 0.415004 1.2:-68452437 MS.gene60525:CDS
ACTGCAAACTGTTAGAATCT+TGG 0.420814 1.2:+68452753 None:intergenic
TTTCTTAAGGTCTACTTGAT+GGG 0.428036 1.2:+68452196 None:intergenic
CTCCTTGCGGCTTCTTCGGA+AGG 0.435231 1.2:+68453558 None:intergenic
GTTTGAGTCTTGAGAAATGT+TGG 0.437980 1.2:-68453023 MS.gene60525:CDS
AGAGTTCATTGCCACGTTCA+TGG 0.438275 1.2:+68452803 None:intergenic
TTACTTCAGATGTAAATGTA+AGG 0.442543 1.2:-68452870 MS.gene60525:CDS
ATCCATGTTATTTCTTGCCA+TGG 0.446464 1.2:+68453632 None:intergenic
TGATTTCTCTGATCCTAAAT+GGG 0.458338 1.2:-68453262 MS.gene60525:CDS
TCAAAGATTTGTCTTTGGGT+TGG 0.475817 1.2:-68453104 MS.gene60525:CDS
TTGTTTCCCCACAAGTTTGA+GGG 0.476639 1.2:+68453337 None:intergenic
AGCACTTGGATTAACAAGAT+TGG 0.479484 1.2:-68452971 MS.gene60525:CDS
TTTCGAACCCTCAAACTTGT+GGG 0.484700 1.2:-68453344 MS.gene60525:CDS
TGTTCCATCCGGAGATGAAT+CGG 0.486372 1.2:-68452510 MS.gene60525:CDS
ATTAAGTTGTCGAATGAAGA+TGG 0.494144 1.2:-68452032 MS.gene60525:CDS
CATCCGCTCCGATTCATCTC+CGG 0.508668 1.2:+68452502 None:intergenic
AAGTCCACAAGTTATATTTG+AGG 0.508872 1.2:-68452360 MS.gene60525:intron
TCAAATCCACAAAGCTCATA+GGG 0.508994 1.2:+68452431 None:intergenic
GGATTGCGCACTTCACTAGC+CGG 0.514204 1.2:-68453392 MS.gene60525:CDS
ACTTGTTGCTTTCTTATGCA+AGG 0.514283 1.2:-68452077 MS.gene60525:CDS
TTCTTAAGGTCTACTTGATG+GGG 0.518779 1.2:+68452197 None:intergenic
GTTTCGAACCCTCAAACTTG+TGG 0.531195 1.2:-68453345 MS.gene60525:CDS
AGTTTGCAGTTATTTACTCC+AGG 0.537677 1.2:-68452740 MS.gene60525:intron
ATTGTTTCCCCACAAGTTTG+AGG 0.540471 1.2:+68453336 None:intergenic
ACTTGGATTAACAAGATTGG+TGG 0.553442 1.2:-68452968 MS.gene60525:CDS
GTTGTCGAATGAAGATGGTA+AGG 0.554984 1.2:-68452027 MS.gene60525:CDS
TACTTCAGATGTAAATGTAA+GGG 0.557142 1.2:-68452869 MS.gene60525:CDS
CCAACGCAGGCTTATCAACT+CGG 0.559262 1.2:-68453198 MS.gene60525:CDS
TTGCGGCTTCTTCGGAAGGT+AGG 0.559549 1.2:+68453562 None:intergenic
GCAAACTGTTAGAATCTTGG+CGG 0.561620 1.2:+68452756 None:intergenic
TCACTTAAATTGTATTCATG+TGG 0.563141 1.2:-68453162 MS.gene60525:CDS
AAGGATACTTGTTCTCCTTG+CGG 0.568084 1.2:+68453545 None:intergenic
AACTGTTAGAATCTTGGCGG+CGG 0.578443 1.2:+68452759 None:intergenic
GATTTGGGAGATGAAGCACT+TGG 0.579721 1.2:-68452985 MS.gene60525:CDS
GAGAAAACTTGTTAATGTCC+CGG 0.581682 1.2:+68453373 None:intergenic
CCGAGTTGATAAGCCTGCGT+TGG 0.581804 1.2:+68453198 None:intergenic
AAATGTAAGGGCTATAGAAG+AGG 0.584772 1.2:-68452857 MS.gene60525:CDS
AACCATGGCAAGAAATAACA+TGG 0.586413 1.2:-68453634 None:intergenic
CTGACCTCAAATATAACTTG+TGG 0.595453 1.2:+68452356 None:intergenic
TAAATACTTCAAATATTCTG+GGG 0.604843 1.2:-68452899 MS.gene60525:CDS
GATTGCGCACTTCACTAGCC+GGG 0.605774 1.2:-68453391 MS.gene60525:CDS
CGCTCCGATTCATCTCCGGA+TGG 0.616905 1.2:+68452506 None:intergenic
TACCTTCCGAAGAAGCCGCA+AGG 0.619142 1.2:-68453560 MS.gene60525:CDS
CTAACAGTTGTGCACATCCA+CGG 0.626912 1.2:+68451994 None:intergenic
TTCGAACCCTCAAACTTGTG+GGG 0.628166 1.2:-68453343 MS.gene60525:CDS
GTTGTTCCAATTGCCAACGC+AGG 0.635639 1.2:-68453211 MS.gene60525:CDS
GAATCGGAATTCCATGAACG+TGG 0.681476 1.2:-68452814 MS.gene60525:CDS
TGGCGGCGGAGAAATCATGA+AGG 0.685071 1.2:+68452773 None:intergenic
GGTAAGGTCGAATTTCGCCG+TGG 0.737861 1.2:-68452011 MS.gene60525:CDS
CATCCGGAGATGAATCGGAG+CGG 0.748262 1.2:-68452505 MS.gene60525:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTAAACATTGTTATAAAAA+AGG - chr1.2:68453043-68453062 MS.gene60525:CDS 15.0%
!! TTAAATACTTCAAATATTCT+GGG - chr1.2:68452677-68452696 MS.gene60525:intron 15.0%
!!! TAATTAATTTTACAATGTTG+TGG - chr1.2:68452903-68452922 MS.gene60525:CDS 15.0%
!!! TATTTGAAGTATTTAAGATT+TGG + chr1.2:68452673-68452692 None:intergenic 15.0%
!!! TTTTTTATAACAATGTTTAG+AGG + chr1.2:68453044-68453063 None:intergenic 15.0%
!! CTTAAATACTTCAAATATTC+TGG - chr1.2:68452676-68452695 MS.gene60525:intron 20.0%
!! GTCATTGATATATAGTTATA+TGG - chr1.2:68453298-68453317 MS.gene60525:CDS 20.0%
!! TAAATACTTCAAATATTCTG+GGG - chr1.2:68452678-68452697 MS.gene60525:intron 20.0%
!!! AAAATTTGTTATCAACTTGT+AGG - chr1.2:68452521-68452540 MS.gene60525:intron 20.0%
! AAATTGTTATCTTCCCATTT+AGG + chr1.2:68452331-68452350 None:intergenic 25.0%
! ACAAAAACTGGTTAAAGATA+TGG - chr1.2:68452056-68452075 MS.gene60525:CDS 25.0%
! ATGCTTGAAAAATACTTTGA+AGG - chr1.2:68453433-68453452 MS.gene60525:CDS 25.0%
! TAAATGGGAAGATAACAATT+TGG - chr1.2:68452330-68452349 MS.gene60525:intron 25.0%
! TACTTCAGATGTAAATGTAA+GGG - chr1.2:68452708-68452727 MS.gene60525:intron 25.0%
! TCACTTAAATTGTATTCATG+TGG - chr1.2:68452415-68452434 MS.gene60525:CDS 25.0%
! TTACTTCAGATGTAAATGTA+AGG - chr1.2:68452707-68452726 MS.gene60525:intron 25.0%
!! AAGTAGACCTTAAGAAATTT+TGG - chr1.2:68453387-68453406 MS.gene60525:CDS 25.0%
!! AATTTGGCAAACTTTGATTT+GGG - chr1.2:68452577-68452596 MS.gene60525:intron 25.0%
!! AGTTTTCATTGAAATTGATG+TGG + chr1.2:68452093-68452112 None:intergenic 25.0%
!! TCTTTAACCAGTTTTTGTTA+AGG + chr1.2:68452054-68452073 None:intergenic 25.0%
!!! AAAGTATTTTTCAAGCATTG+AGG + chr1.2:68453431-68453450 None:intergenic 25.0%
!!! AATTCAATTAAAAGAGTACC+TGG + chr1.2:68452858-68452877 None:intergenic 25.0%
!!! CATTGATTTTTCTCTAGAAT+CGG - chr1.2:68452747-68452766 MS.gene60525:CDS 25.0%
AAGTCCACAAGTTATATTTG+AGG - chr1.2:68453217-68453236 MS.gene60525:CDS 30.0%
ACAATTTCTAAACACAAGCA+AGG + chr1.2:68452935-68452954 None:intergenic 30.0%
AGTCATAAGTTCTTCATTTG+TGG + chr1.2:68453483-68453502 None:intergenic 30.0%
ATAAAAAAGGTTGTTCCATC+CGG - chr1.2:68453056-68453075 MS.gene60525:CDS 30.0%
ATTGAAATTGATGTGGTCTT+CGG + chr1.2:68452086-68452105 None:intergenic 30.0%
ATTTCTTAAGGTCTACTTGA+TGG + chr1.2:68453385-68453404 None:intergenic 30.0%
CAAGTATCCTTAACAAAAAC+TGG - chr1.2:68452044-68452063 MS.gene60525:CDS 30.0%
GAATTTGGCAAACTTTGATT+TGG - chr1.2:68452576-68452595 MS.gene60525:intron 30.0%
GAGTTTGCCAAAATTTCTTA+AGG + chr1.2:68453397-68453416 None:intergenic 30.0%
TCTTGAGAAATGTTGGAATT+TGG - chr1.2:68452561-68452580 MS.gene60525:intron 30.0%
TGATTTCTCTGATCCTAAAT+GGG - chr1.2:68452315-68452334 MS.gene60525:intron 30.0%
TGTTTGCTCGTTTATATTAC+AGG - chr1.2:68453346-68453365 MS.gene60525:CDS 30.0%
TTGATTTCTCTGATCCTAAA+TGG - chr1.2:68452314-68452333 MS.gene60525:intron 30.0%
TTTCTTAAGGTCTACTTGAT+GGG + chr1.2:68453384-68453403 None:intergenic 30.0%
! ATTAAGTTGTCGAATGAAGA+TGG - chr1.2:68453545-68453564 MS.gene60525:CDS 30.0%
! CATTAACAAGTTTTCTCTCA+CGG - chr1.2:68452210-68452229 MS.gene60525:CDS 30.0%
! CTTGAAAAATACTTTGAAGG+TGG - chr1.2:68453436-68453455 MS.gene60525:CDS 30.0%
! TCTTATGCAAGGAAAAGTTT+TGG - chr1.2:68453511-68453530 MS.gene60525:CDS 30.0%
AAATGTAAGGGCTATAGAAG+AGG - chr1.2:68452720-68452739 MS.gene60525:intron 35.0%
ACTGCAAACTGTTAGAATCT+TGG + chr1.2:68452827-68452846 None:intergenic 35.0%
ACTTGGATTAACAAGATTGG+TGG - chr1.2:68452609-68452628 MS.gene60525:intron 35.0%
AGCACTTGGATTAACAAGAT+TGG - chr1.2:68452606-68452625 MS.gene60525:intron 35.0%
AGTTTGCAGTTATTTACTCC+AGG - chr1.2:68452837-68452856 MS.gene60525:CDS 35.0%
ATTGCTGGAAAAACTCACAT+TGG - chr1.2:68453190-68453209 MS.gene60525:CDS 35.0%
CTGACCTCAAATATAACTTG+TGG + chr1.2:68453224-68453243 None:intergenic 35.0%
GCACTCAAAGATTTGTCTTT+GGG - chr1.2:68452469-68452488 MS.gene60525:CDS 35.0%
GTTTGAGTCTTGAGAAATGT+TGG - chr1.2:68452554-68452573 MS.gene60525:intron 35.0%
TCAAAGATTTGTCTTTGGGT+TGG - chr1.2:68452473-68452492 MS.gene60525:CDS 35.0%
TCAAATCCACAAAGCTCATA+GGG + chr1.2:68453149-68453168 None:intergenic 35.0%
TGCACTCAAAGATTTGTCTT+TGG - chr1.2:68452468-68452487 MS.gene60525:CDS 35.0%
TTCAAATCCACAAAGCTCAT+AGG + chr1.2:68453150-68453169 None:intergenic 35.0%
TTCTTAAGGTCTACTTGATG+GGG + chr1.2:68453383-68453402 None:intergenic 35.0%
TTGAAGGTGGTAGAAGTAAT+CGG - chr1.2:68453449-68453468 MS.gene60525:CDS 35.0%
! AATGTGAGTTTTTCCAGCAA+TGG + chr1.2:68453191-68453210 None:intergenic 35.0%
! ATGTGAGTTTTTCCAGCAAT+GGG + chr1.2:68453190-68453209 None:intergenic 35.0%
! CTGTGCTTCTTTGATTTCAT+CGG + chr1.2:68452134-68452153 None:intergenic 35.0%
!! ACTTGTTGCTTTCTTATGCA+AGG - chr1.2:68453500-68453519 MS.gene60525:CDS 35.0%
!! GAGAAAACTTGTTAATGTCC+CGG + chr1.2:68452207-68452226 None:intergenic 35.0%
!! TCATCGACTTCATCAGAAAT+TGG - chr1.2:68452164-68452183 MS.gene60525:CDS 35.0%
AAGGATACTTGTTCTCCTTG+CGG + chr1.2:68452035-68452054 None:intergenic 40.0%
ATTGCAAGACGAAGTGATTC+TGG + chr1.2:68451986-68452005 None:intergenic 40.0%
ATTGTTTCCCCACAAGTTTG+AGG + chr1.2:68452244-68452263 None:intergenic 40.0%
CGCAAATTCTTTGAACGCTT+TGG + chr1.2:68453617-68453636 None:intergenic 40.0%
CGGAGAAATCATGAAGGATT+TGG + chr1.2:68452801-68452820 None:intergenic 40.0%
GCAAACTGTTAGAATCTTGG+CGG + chr1.2:68452824-68452843 None:intergenic 40.0%
GTTGTCGAATGAAGATGGTA+AGG - chr1.2:68453550-68453569 MS.gene60525:CDS 40.0%
TTGTTTCCCCACAAGTTTGA+GGG + chr1.2:68452243-68452262 None:intergenic 40.0%
TTTCGAACCCTCAAACTTGT+GGG - chr1.2:68452233-68452252 MS.gene60525:intron 40.0%
AACTGTTAGAATCTTGGCGG+CGG + chr1.2:68452821-68452840 None:intergenic 45.0%
AGAGTTCATTGCCACGTTCA+TGG + chr1.2:68452777-68452796 None:intergenic 45.0%
ATGCATCCCTATGAGCTTTG+TGG - chr1.2:68453140-68453159 MS.gene60525:CDS 45.0%
CTAACAGTTGTGCACATCCA+CGG + chr1.2:68453586-68453605 None:intergenic 45.0%
GAATCGGAATTCCATGAACG+TGG - chr1.2:68452763-68452782 MS.gene60525:CDS 45.0%
GTTTCGAACCCTCAAACTTG+TGG - chr1.2:68452232-68452251 MS.gene60525:intron 45.0%
TGTTCCATCCGGAGATGAAT+CGG - chr1.2:68453067-68453086 MS.gene60525:CDS 45.0%
TTCGAACCCTCAAACTTGTG+GGG - chr1.2:68452234-68452253 MS.gene60525:intron 45.0%
! GATTTGGGAGATGAAGCACT+TGG - chr1.2:68452592-68452611 MS.gene60525:intron 45.0%
!!! GTTGCTTTTGCGACACAACA+AGG - chr1.2:68452274-68452293 MS.gene60525:intron 45.0%
CCAACGCAGGCTTATCAACT+CGG - chr1.2:68452379-68452398 MS.gene60525:CDS 50.0%
GTTGTTCCAATTGCCAACGC+AGG - chr1.2:68452366-68452385 MS.gene60525:CDS 50.0%
TGTTCTCCTTGCGGCTTCTT+CGG + chr1.2:68452026-68452045 None:intergenic 50.0%
! GATAAGCCTGCGTTGGCAAT+TGG + chr1.2:68452375-68452394 None:intergenic 50.0%
CATCCGCTCCGATTCATCTC+CGG + chr1.2:68453078-68453097 None:intergenic 55.0%
CATCCGGAGATGAATCGGAG+CGG - chr1.2:68453072-68453091 MS.gene60525:CDS 55.0%
GATTGCGCACTTCACTAGCC+GGG - chr1.2:68452186-68452205 MS.gene60525:CDS 55.0%
GCTCAAAAGCTGCCCATTGC+TGG - chr1.2:68453175-68453194 MS.gene60525:CDS 55.0%
GGATTGCGCACTTCACTAGC+CGG - chr1.2:68452185-68452204 MS.gene60525:CDS 55.0%
GGTAAGGTCGAATTTCGCCG+TGG - chr1.2:68453566-68453585 MS.gene60525:CDS 55.0%
TACCTTCCGAAGAAGCCGCA+AGG - chr1.2:68452017-68452036 MS.gene60525:CDS 55.0%
TGGCGGCGGAGAAATCATGA+AGG + chr1.2:68452807-68452826 None:intergenic 55.0%
TTGCGGCTTCTTCGGAAGGT+AGG + chr1.2:68452018-68452037 None:intergenic 55.0%
!! CCGAGTTGATAAGCCTGCGT+TGG + chr1.2:68452382-68452401 None:intergenic 55.0%
CGCTCCGATTCATCTCCGGA+TGG + chr1.2:68453074-68453093 None:intergenic 60.0%
CTCCTTGCGGCTTCTTCGGA+AGG + chr1.2:68452022-68452041 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 68451947 68453652 68451947 ID=MS.gene60525
chr1.2 mRNA 68451947 68453652 68451947 ID=MS.gene60525.t1;Parent=MS.gene60525
chr1.2 exon 68452741 68453652 68452741 ID=MS.gene60525.t1.exon1;Parent=MS.gene60525.t1
chr1.2 CDS 68452741 68453652 68452741 ID=cds.MS.gene60525.t1;Parent=MS.gene60525.t1
chr1.2 exon 68452361 68452534 68452361 ID=MS.gene60525.t1.exon2;Parent=MS.gene60525.t1
chr1.2 CDS 68452361 68452534 68452361 ID=cds.MS.gene60525.t1;Parent=MS.gene60525.t1
chr1.2 exon 68451947 68452231 68451947 ID=MS.gene60525.t1.exon3;Parent=MS.gene60525.t1
chr1.2 CDS 68451947 68452231 68451947 ID=cds.MS.gene60525.t1;Parent=MS.gene60525.t1
Gene Sequence

>MS.gene60525

ATGGCAAGAAATAACATGGATATGTTTTCTTTGATTCCAGAATCACTTCGTCTTGCAATCGTTTCTTTCCTACCTTCCGAAGAAGCCGCAAGGAGAACAAGTATCCTTAACAAAAACTGGTTAAAGATATGGCAGTCCGAAGACCACATCAATTTCAATGAAAACTTCTTTGTCAATTCAAGTTCCGATGAAATCAAAGAAGCACAGAGAAAATTTTTCATCGACTTCATCAGAAATTGGATTGCGCACTTCACTAGCCGGGACATTAACAAGTTTTCTCTCACGGTTTCGAACCCTCAAACTTGTGGGGAAACAATTGAACGTTGTGTTGCTTTTGCGACACAACAAGGCGTGAAAGATTTAACATTTGATTTCTCTGATCCTAAATGGGAAGATAACAATTTGGATGATAAACATGCGTTGTTCCAATTGCCAACGCAGGCTTATCAACTCGGATCATCACTTGAATCACTTAAATTGTATTCATGTGGTTTTGATATGCAAAATCTTCATAACTTTGTTGCACTCAAAGATTTGTCTTTGGGTTGGATTGAAGTTAAAATCAAAACTCTCAAAAATTTGTTATCAACTTGTAGGACGATTCAAAGTTTGAGTCTTGAGAAATGTTGGAATTTGGCAAACTTTGATTTGGGAGATGAAGCACTTGGATTAACAAGATTGGTGGTAAACAAGTGTGATTCTGAGTATTTCATATTTAATGCACCAAATCTTAAATACTTCAAATATTCTGGGGCTGTGTTTACTTCAGATGTAAATGTAAGGGCTATAGAAGAGGTAGACATTGATTTTTCTCTAGAATCGGAATTCCATGAACGTGGCAATGAACTCTGCCAAATCCTTCATGATTTCTCCGCCGCCAAGATTCTAACAGTTTGCAGTTATTTACTCCAGGTACTCTTTTAATTGAATTCTTGTTAATGATTATGCATGTAGTTTAATTAATTTTACAATGTTGTGGCTGAATCCTTGCTTGTGTTTAGAAATTGTTTGTTACATTGTGCATACATTTAAATATCTCATACGAATCAACTTTTTGAATTGATCTTTTTTTCTAATTGATGTTTTTATTGTTACCTCTAAACATTGTTATAAAAAAGGTTGTTCCATCCGGAGATGAATCGGAGCGGATGCAAAGTGCTTTGAATGTAAAACATTTGATTCTAAAGACTCAAATGCATCCCTATGAGCTTTGTGGATTTGAATTCATGCTCAAAAGCTGCCCATTGCTGGAAAAACTCACATTGGACATAAGTCCACAAGTTATATTTGAGGTCAGTCATAAAATACTTAACATTTCATGTCTCTCTTTTTCTAAATATTTAACATAGTAGTCATTGATATATAGTTATATGGTTTGATCATTTTTAACACTTTTGAATGTTTGCTCGTTTATATTACAGGACTATACATTTCCCCATCAAGTAGACCTTAAGAAATTTTGGCAAACTCGTCGAATGTTTCCTCAATGCTTGAAAAATACTTTGAAGGTGGTAGAAGTAATCGGATTGAGAGCCACAAATGAAGAACTTATGACTTGTTGCTTTCTTATGCAAGGAAAAGTTTTGGAACAGATTAATATTAAGTTGTCGAATGAAGATGGTAAGGTCGAATTTCGCCGTGGATGTGCACAACTGTTAGTCAATGCTCCAAAGCGTTCAAAGAATTTGCGAATATCAATTGATTGA
Protein sequence

>MS.gene60525.t1

MARNNMDMFSLIPESLRLAIVSFLPSEEAARRTSILNKNWLKIWQSEDHINFNENFFVNSSSDEIKEAQRKFFIDFIRNWIAHFTSRDINKFSLTVSNPQTCGETIERCVAFATQQGVKDLTFDFSDPKWEDNNLDDKHALFQLPTQAYQLGSSLESLKLYSCGFDMQNLHNFVALKDLSLGWIEVKIKTLKNLLSTCRTIQSLSLEKCWNLANFDLGDEALGLTRLVVNKCDSEYFIFNAPNLKYFKYSGAVFTSDVNVRAIEEVDIDFSLESEFHERGNELCQILHDFSAAKILTVCSYLLQVVPSGDESERMQSALNVKHLILKTQMHPYELCGFEFMLKSCPLLEKLTLDISPQVIFEDYTFPHQVDLKKFWQTRRMFPQCLKNTLKVVEVIGLRATNEELMTCCFLMQGKVLEQINIKLSNEDGKVEFRRGCAQLLVNAPKRSKNLRISID