Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75904.t1 | XP_003595473.1 | 82.2 | 394 | 27 | 2 | 1 | 352 | 1 | 393 | 1.40E-178 | 635.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75904.t1 | Q9LJ48 | 34.3 | 321 | 187 | 12 | 10 | 315 | 11 | 322 | 5.4e-38 | 159.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75904.t1 | G7ISV8 | 82.2 | 394 | 27 | 2 | 1 | 352 | 1 | 393 | 1.0e-178 | 635.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75904.t1 | MTR_2g048140 | 82.234 | 394 | 27 | 2 | 1 | 352 | 1 | 393 | 0.0 | 642 |
MS.gene75904.t1 | MTR_1g090907 | 72.335 | 394 | 66 | 2 | 1 | 352 | 1 | 393 | 0.0 | 553 |
MS.gene75904.t1 | MTR_1g090903 | 56.111 | 360 | 139 | 5 | 1 | 352 | 1 | 349 | 2.58e-122 | 358 |
MS.gene75904.t1 | MTR_5g080150 | 35.989 | 364 | 215 | 8 | 5 | 352 | 3 | 364 | 3.23e-60 | 198 |
MS.gene75904.t1 | MTR_3g448340 | 39.088 | 307 | 172 | 8 | 5 | 304 | 4 | 302 | 4.66e-59 | 197 |
MS.gene75904.t1 | MTR_1g071060 | 74.444 | 90 | 23 | 0 | 40 | 129 | 7 | 96 | 6.29e-40 | 136 |
MS.gene75904.t1 | MTR_3g049530 | 33.117 | 308 | 135 | 10 | 5 | 309 | 4 | 243 | 9.31e-32 | 124 |
MS.gene75904.t1 | MTR_1g021825 | 26.006 | 323 | 189 | 13 | 10 | 323 | 91 | 372 | 3.62e-13 | 70.9 |
MS.gene75904.t1 | MTR_1g021825 | 25.926 | 324 | 190 | 13 | 9 | 323 | 19 | 301 | 4.26e-13 | 70.5 |
MS.gene75904.t1 | MTR_8g468810 | 26.316 | 323 | 203 | 12 | 5 | 313 | 23 | 324 | 1.04e-11 | 65.9 |
MS.gene75904.t1 | MTR_8g468810 | 26.316 | 323 | 203 | 12 | 5 | 313 | 23 | 324 | 1.05e-11 | 66.2 |
MS.gene75904.t1 | MTR_2g072530 | 26.446 | 121 | 84 | 2 | 7 | 127 | 13 | 128 | 1.05e-11 | 66.2 |
MS.gene75904.t1 | MTR_5g040850 | 24.920 | 313 | 186 | 12 | 20 | 323 | 20 | 292 | 1.72e-11 | 65.5 |
MS.gene75904.t1 | MTR_2g047858 | 23.028 | 317 | 193 | 13 | 20 | 323 | 128 | 406 | 1.90e-11 | 65.5 |
MS.gene75904.t1 | MTR_8g015770 | 24.011 | 354 | 213 | 14 | 9 | 330 | 8 | 337 | 2.24e-11 | 65.5 |
MS.gene75904.t1 | MTR_8g468810 | 26.415 | 318 | 195 | 12 | 5 | 301 | 23 | 322 | 5.35e-11 | 63.5 |
MS.gene75904.t1 | MTR_8g468810 | 26.349 | 315 | 197 | 12 | 5 | 305 | 23 | 316 | 7.53e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75904.t1 | AT3G29830 | 34.268 | 321 | 187 | 12 | 10 | 315 | 11 | 322 | 4.43e-44 | 158 |
MS.gene75904.t1 | AT3G29830 | 34.268 | 321 | 187 | 12 | 10 | 315 | 11 | 322 | 4.54e-44 | 158 |
MS.gene75904.t1 | AT1G56400 | 32.154 | 311 | 189 | 9 | 16 | 312 | 22 | 324 | 1.66e-42 | 154 |
MS.gene75904.t1 | AT5G54820 | 31.034 | 319 | 198 | 9 | 9 | 312 | 9 | 320 | 3.04e-40 | 148 |
MS.gene75904.t1 | AT3G62230 | 26.398 | 322 | 225 | 8 | 6 | 319 | 7 | 324 | 1.55e-31 | 124 |
MS.gene75904.t1 | AT1G56400 | 32.661 | 248 | 145 | 8 | 79 | 312 | 44 | 283 | 8.37e-30 | 119 |
MS.gene75904.t1 | AT5G56410 | 31.855 | 248 | 143 | 10 | 16 | 248 | 12 | 248 | 1.82e-14 | 74.7 |
MS.gene75904.t1 | AT3G58860 | 24.650 | 357 | 235 | 13 | 1 | 346 | 1 | 334 | 2.66e-13 | 71.2 |
MS.gene75904.t1 | AT3G59200 | 25.410 | 366 | 223 | 15 | 10 | 346 | 10 | 354 | 1.17e-12 | 68.6 |
MS.gene75904.t1 | AT3G59200 | 25.676 | 370 | 219 | 16 | 9 | 346 | 9 | 354 | 2.57e-12 | 68.2 |
MS.gene75904.t1 | AT5G02920 | 26.250 | 240 | 140 | 7 | 16 | 248 | 37 | 246 | 3.80e-12 | 66.2 |
MS.gene75904.t1 | AT1G61330 | 26.282 | 312 | 201 | 10 | 2 | 306 | 5 | 294 | 1.06e-11 | 66.2 |
Find 61 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAATCGTTATCTTCCCATTT+TGG | 0.155222 | 2.1:+43442388 | None:intergenic |
CTTAAATACTTCAAATATTC+TGG | 0.168651 | 2.1:-43442040 | MS.gene75904:CDS |
TTGATTTCTTTGATCCAAAA+TGG | 0.176385 | 2.1:-43442402 | MS.gene75904:CDS |
ATGTAGACCTTAAGAAATTT+TGG | 0.214054 | 2.1:-43441334 | MS.gene75904:CDS |
TTTCTTAAGGTCTACATCAT+AGG | 0.260201 | 2.1:+43441340 | None:intergenic |
TCATCAACTTTATCACAAAT+TGG | 0.280792 | 2.1:-43442552 | MS.gene75904:CDS |
TGCACTTAAAGACTTATCTT+TGG | 0.283963 | 2.1:-43442248 | MS.gene75904:CDS |
TCTTGAGAAGTGTTGGAATT+TGG | 0.285867 | 2.1:-43442155 | MS.gene75904:CDS |
GAATTTGGCGAACTTTGATT+TGG | 0.291195 | 2.1:-43442140 | MS.gene75904:CDS |
TTACTTCAGATATAAATGTT+AGG | 0.319721 | 2.1:-43442009 | MS.gene75904:CDS |
TCCCTAGCCGCGGCATTAAC+AGG | 0.323207 | 2.1:-43442519 | MS.gene75904:CDS |
CGGAGAAATCATGAAGGATT+TGG | 0.330294 | 2.1:+43441918 | None:intergenic |
TATTTGAAGTATTTAAGATT+TGG | 0.333013 | 2.1:+43442046 | None:intergenic |
TGTTGCTTTCGCAACACAAC+GGG | 0.334493 | 2.1:-43442443 | MS.gene75904:CDS |
CGTTTGCAGTTATCTACTTC+AGG | 0.345166 | 2.1:-43441879 | MS.gene75904:intron |
GCACTTAAAGACTTATCTTT+GGG | 0.370481 | 2.1:-43442247 | MS.gene75904:CDS |
CTTCAATGAAAACAACTTTG+TGG | 0.387816 | 2.1:-43442617 | MS.gene75904:CDS |
GAGTTTGCCAAAATTTCTTA+AGG | 0.400757 | 2.1:+43441327 | None:intergenic |
ATATATTAGGTCGTTCCATC+TGG | 0.419959 | 2.1:-43441650 | MS.gene75904:intron |
ACTGCAAACGGTTAGAATCT+TGG | 0.425579 | 2.1:+43441892 | None:intergenic |
AATTTGGCGAACTTTGATTT+GGG | 0.426916 | 2.1:-43442139 | MS.gene75904:CDS |
TACTTCAGATATAAATGTTA+GGG | 0.428980 | 2.1:-43442008 | MS.gene75904:CDS |
TGTTCTTGTTGTGGCTTCTT+CGG | 0.433584 | 2.1:+43442693 | None:intergenic |
GTTTGAGTCTTGAGAAGTGT+TGG | 0.441647 | 2.1:-43442162 | MS.gene75904:CDS |
CGTTCCATCTGGAGATGAAC+CGG | 0.463128 | 2.1:-43441639 | MS.gene75904:CDS |
TTCTTAAGGTCTACATCATA+GGG | 0.468849 | 2.1:+43441341 | None:intergenic |
ACCACTTGGATTAACAAGAT+TGG | 0.469749 | 2.1:-43442110 | MS.gene75904:CDS |
ACCTGTTAATGCCGCGGCTA+GGG | 0.471379 | 2.1:+43442518 | None:intergenic |
TGATTTCTTTGATCCAAAAT+GGG | 0.472630 | 2.1:-43442401 | MS.gene75904:CDS |
TTGTTTCCCCACAAGTTTGA+GGG | 0.476639 | 2.1:+43442476 | None:intergenic |
GAAACAATTGCAAGAAGAAG+TGG | 0.491313 | 2.1:+43442727 | None:intergenic |
TATCGAACCCTCAAACTTGT+GGG | 0.494549 | 2.1:-43442483 | MS.gene75904:CDS |
CTTGTTGTGGCTTCTTCGGT+GGG | 0.501917 | 2.1:+43442697 | None:intergenic |
TTGTGGCTTCTTCGGTGGGT+AGG | 0.514264 | 2.1:+43442701 | None:intergenic |
TCTTGTTGTGGCTTCTTCGG+TGG | 0.517399 | 2.1:+43442696 | None:intergenic |
AAGGATAGATGTTCTTGTTG+TGG | 0.519897 | 2.1:+43442684 | None:intergenic |
CCAACACATGTTTATCAACT+CGG | 0.525652 | 2.1:-43442337 | MS.gene75904:CDS |
AAAGCACTTTGCATCTTCAC+CGG | 0.532263 | 2.1:+43441620 | None:intergenic |
CTGAAGTAGATAACTGCAAA+CGG | 0.540402 | 2.1:+43441880 | None:intergenic |
ATTGTTTCCCCACAAGTTTG+AGG | 0.540471 | 2.1:+43442475 | None:intergenic |
TCGCTAAAACTGTATTCTTG+TGG | 0.545270 | 2.1:-43442301 | MS.gene75904:CDS |
AACCTGTTAATGCCGCGGCT+AGG | 0.547285 | 2.1:+43442517 | None:intergenic |
TTAAAGACTTATCTTTGGGT+CGG | 0.547624 | 2.1:-43442243 | MS.gene75904:CDS |
GTGTTGCTTTCGCAACACAA+CGG | 0.559307 | 2.1:-43442444 | MS.gene75904:CDS |
ACTTGGATTAACAAGATTGG+TGG | 0.562210 | 2.1:-43442107 | MS.gene75904:CDS |
ACCAATCTTGTTAATCCAAG+TGG | 0.566249 | 2.1:+43442109 | None:intergenic |
CCGAGTTGATAAACATGTGT+TGG | 0.566603 | 2.1:+43442337 | None:intergenic |
AACCATGGCAAAAGATAACA+TGG | 0.570974 | 2.1:-43442773 | None:intergenic |
AAATGTTAGGGCTATAGAAG+AGG | 0.577818 | 2.1:-43441996 | MS.gene75904:CDS |
ATATCGAACCCTCAAACTTG+TGG | 0.582748 | 2.1:-43442484 | MS.gene75904:CDS |
AACGGTTAGAATCTTGGCGG+CGG | 0.607837 | 2.1:+43441898 | None:intergenic |
GATTTGGGAGATGAACCACT+TGG | 0.617804 | 2.1:-43442124 | MS.gene75904:CDS |
GCAAACGGTTAGAATCTTGG+CGG | 0.622750 | 2.1:+43441895 | None:intergenic |
ATCGCACACTTCCCTAGCCG+CGG | 0.632187 | 2.1:-43442529 | MS.gene75904:CDS |
AAGCATTGAGGAAACACTCG+AGG | 0.661638 | 2.1:+43441305 | None:intergenic |
TTCACCGGTTCATCTCCAGA+TGG | 0.661858 | 2.1:+43441635 | None:intergenic |
ATCGAACCCTCAAACTTGTG+GGG | 0.663466 | 2.1:-43442482 | MS.gene75904:CDS |
GAGAAAACCTGTTAATGCCG+CGG | 0.665328 | 2.1:+43442512 | None:intergenic |
TGGCGGCGGAGAAATCATGA+AGG | 0.685071 | 2.1:+43441912 | None:intergenic |
GAATCAGAATTCGATGAACG+TGG | 0.701292 | 2.1:-43441953 | MS.gene75904:CDS |
GTTGCTTTCGCAACACAACG+GGG | 0.731720 | 2.1:-43442442 | MS.gene75904:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATCGTTAATATATAGTTATA+TGG | - | chr2.1:43442629-43442648 | MS.gene75904:CDS | 15.0% |
!!! | TATTTGAAGTATTTAAGATT+TGG | + | chr2.1:43442006-43442025 | None:intergenic | 15.0% |
!! | ATTTGCATTGTACATATATT+AGG | - | chr2.1:43442386-43442405 | MS.gene75904:CDS | 20.0% |
!! | CTTAAATACTTCAAATATTC+TGG | - | chr2.1:43442009-43442028 | MS.gene75904:CDS | 20.0% |
!! | TACTTCAGATATAAATGTTA+GGG | - | chr2.1:43442041-43442060 | MS.gene75904:CDS | 20.0% |
!! | TTACTTCAGATATAAATGTT+AGG | - | chr2.1:43442040-43442059 | MS.gene75904:CDS | 20.0% |
! | AATGTCGGAAGTAAATTAAT+AGG | + | chr2.1:43442227-43442246 | None:intergenic | 25.0% |
! | ATGCATTAATATGAACTTTG+TGG | - | chr2.1:43442483-43442502 | MS.gene75904:CDS | 25.0% |
! | ATGCTTGAAAAATACTTTGA+AGG | - | chr2.1:43442761-43442780 | MS.gene75904:CDS | 25.0% |
! | TCATCAACTTTATCACAAAT+TGG | - | chr2.1:43441497-43441516 | MS.gene75904:intron | 25.0% |
! | TGATTTCTTTGATCCAAAAT+GGG | - | chr2.1:43441648-43441667 | MS.gene75904:intron | 25.0% |
! | TGTTTGCTTGTATATATTAC+AGG | - | chr2.1:43442674-43442693 | MS.gene75904:CDS | 25.0% |
! | TTGATTTCTTTGATCCAAAA+TGG | - | chr2.1:43441647-43441666 | MS.gene75904:intron | 25.0% |
!! | ATGTAGACCTTAAGAAATTT+TGG | - | chr2.1:43442715-43442734 | MS.gene75904:CDS | 25.0% |
!! | TTCCGACATTGATTAAATAT+GGG | - | chr2.1:43442237-43442256 | MS.gene75904:CDS | 25.0% |
!!! | AAAGTATTTTTCAAGCATTG+AGG | + | chr2.1:43442759-43442778 | None:intergenic | 25.0% |
AAGTCCACAAGTTATATTTG+AGG | - | chr2.1:43442560-43442579 | MS.gene75904:CDS | 30.0% | |
ATTGCTTGAAAAACTCACAT+TGG | - | chr2.1:43442533-43442552 | MS.gene75904:CDS | 30.0% | |
CTTCAATGAAAACAACTTTG+TGG | - | chr2.1:43441432-43441451 | MS.gene75904:intron | 30.0% | |
GAGTTTGCCAAAATTTCTTA+AGG | + | chr2.1:43442725-43442744 | None:intergenic | 30.0% | |
GCACTTAAAGACTTATCTTT+GGG | - | chr2.1:43441802-43441821 | MS.gene75904:intron | 30.0% | |
TGCACTTAAAGACTTATCTT+TGG | - | chr2.1:43441801-43441820 | MS.gene75904:intron | 30.0% | |
TTAAAGACTTATCTTTGGGT+CGG | - | chr2.1:43441806-43441825 | MS.gene75904:intron | 30.0% | |
TTCAAGATGTGATTATTTGC+TGG | - | chr2.1:43442354-43442373 | MS.gene75904:CDS | 30.0% | |
TTCTTAAGGTCTACATCATA+GGG | + | chr2.1:43442711-43442730 | None:intergenic | 30.0% | |
TTTCTTAAGGTCTACATCAT+AGG | + | chr2.1:43442712-43442731 | None:intergenic | 30.0% | |
! | AAATCGTTATCTTCCCATTT+TGG | + | chr2.1:43441664-43441683 | None:intergenic | 30.0% |
! | AATTTGGCGAACTTTGATTT+GGG | - | chr2.1:43441910-43441929 | MS.gene75904:CDS | 30.0% |
! | ATTGAAGTCGATGTTTTCTT+CGG | + | chr2.1:43441419-43441438 | None:intergenic | 30.0% |
! | CTTCCGACATTGATTAAATA+TGG | - | chr2.1:43442236-43442255 | MS.gene75904:CDS | 30.0% |
! | CTTGAAAAATACTTTGAAGG+TGG | - | chr2.1:43442764-43442783 | MS.gene75904:CDS | 30.0% |
! | TCCGACATTGATTAAATATG+GGG | - | chr2.1:43442238-43442257 | MS.gene75904:CDS | 30.0% |
!!! | AATGTGAGTTTTTCAAGCAA+TGG | + | chr2.1:43442534-43442553 | None:intergenic | 30.0% |
!!! | ATGTGAGTTTTTCAAGCAAT+GGG | + | chr2.1:43442533-43442552 | None:intergenic | 30.0% |
!!! | CCATATCTTTAGCCATTTTT+CGG | + | chr2.1:43441392-43441411 | None:intergenic | 30.0% |
AAATGTTAGGGCTATAGAAG+AGG | - | chr2.1:43442053-43442072 | MS.gene75904:CDS | 35.0% | |
AAGGATAGATGTTCTTGTTG+TGG | + | chr2.1:43441368-43441387 | None:intergenic | 35.0% | |
ACCAATCTTGTTAATCCAAG+TGG | + | chr2.1:43441943-43441962 | None:intergenic | 35.0% | |
ACCACTTGGATTAACAAGAT+TGG | - | chr2.1:43441939-43441958 | MS.gene75904:CDS | 35.0% | |
ACTTGGATTAACAAGATTGG+TGG | - | chr2.1:43441942-43441961 | MS.gene75904:CDS | 35.0% | |
ATATATTAGGTCGTTCCATC+TGG | - | chr2.1:43442399-43442418 | MS.gene75904:CDS | 35.0% | |
CATCTATCCTTACCGAAAAA+TGG | - | chr2.1:43441377-43441396 | MS.gene75904:intron | 35.0% | |
CCAACACATGTTTATCAACT+CGG | - | chr2.1:43441712-43441731 | MS.gene75904:intron | 35.0% | |
CCGAAAAATGGCTAAAGATA+TGG | - | chr2.1:43441389-43441408 | MS.gene75904:intron | 35.0% | |
CTGAAGTAGATAACTGCAAA+CGG | + | chr2.1:43442172-43442191 | None:intergenic | 35.0% | |
CTGACCTCAAATATAACTTG+TGG | + | chr2.1:43442567-43442586 | None:intergenic | 35.0% | |
GAAACAATTGCAAGAAGAAG+TGG | + | chr2.1:43441325-43441344 | None:intergenic | 35.0% | |
GAATTTGGCGAACTTTGATT+TGG | - | chr2.1:43441909-43441928 | MS.gene75904:CDS | 35.0% | |
GCCCCATATTTAATCAATGT+CGG | + | chr2.1:43442242-43442261 | None:intergenic | 35.0% | |
TCGCTAAAACTGTATTCTTG+TGG | - | chr2.1:43441748-43441767 | MS.gene75904:intron | 35.0% | |
! | ATGGGGCTAGTATATTTAGT+TGG | - | chr2.1:43442255-43442274 | MS.gene75904:CDS | 35.0% |
! | GCGCAAGATTTTCTTAACTT+TGG | - | chr2.1:43441778-43441797 | MS.gene75904:intron | 35.0% |
! | TGGGAAGATAACGATTTTGA+TGG | - | chr2.1:43441667-43441686 | MS.gene75904:intron | 35.0% |
!! | TCTTGAGAAGTGTTGGAATT+TGG | - | chr2.1:43441894-43441913 | MS.gene75904:CDS | 35.0% |
!!! | TCTTTAGCCATTTTTCGGTA+AGG | + | chr2.1:43441387-43441406 | None:intergenic | 35.0% |
ACTGCAAACGGTTAGAATCT+TGG | + | chr2.1:43442160-43442179 | None:intergenic | 40.0% | |
ATATCGAACCCTCAAACTTG+TGG | - | chr2.1:43441565-43441584 | MS.gene75904:intron | 40.0% | |
ATTGTTTCCCCACAAGTTTG+AGG | + | chr2.1:43441577-43441596 | None:intergenic | 40.0% | |
CGGAGAAATCATGAAGGATT+TGG | + | chr2.1:43442134-43442153 | None:intergenic | 40.0% | |
CGTTTGCAGTTATCTACTTC+AGG | - | chr2.1:43442170-43442189 | MS.gene75904:CDS | 40.0% | |
GAATCAGAATTCGATGAACG+TGG | - | chr2.1:43442096-43442115 | MS.gene75904:CDS | 40.0% | |
TATCGAACCCTCAAACTTGT+GGG | - | chr2.1:43441566-43441585 | MS.gene75904:intron | 40.0% | |
TTGTTTCCCCACAAGTTTGA+GGG | + | chr2.1:43441576-43441595 | None:intergenic | 40.0% | |
! | AAAGCACTTTGCATCTTCAC+CGG | + | chr2.1:43442432-43442451 | None:intergenic | 40.0% |
! | GTTTGAGTCTTGAGAAGTGT+TGG | - | chr2.1:43441887-43441906 | MS.gene75904:CDS | 40.0% |
! | TGTTCTTGTTGTGGCTTCTT+CGG | + | chr2.1:43441359-43441378 | None:intergenic | 40.0% |
!! | CCGAGTTGATAAACATGTGT+TGG | + | chr2.1:43441715-43441734 | None:intergenic | 40.0% |
ATCGAACCCTCAAACTTGTG+GGG | - | chr2.1:43441567-43441586 | MS.gene75904:intron | 45.0% | |
GAGAAAACCTGTTAATGCCG+CGG | + | chr2.1:43441540-43441559 | None:intergenic | 45.0% | |
GATTTGGGAGATGAACCACT+TGG | - | chr2.1:43441925-43441944 | MS.gene75904:CDS | 45.0% | |
GCAAACGGTTAGAATCTTGG+CGG | + | chr2.1:43442157-43442176 | None:intergenic | 45.0% | |
!! | AAGCATTGAGGAAACACTCG+AGG | + | chr2.1:43442747-43442766 | None:intergenic | 45.0% |
!! | GTGTTGCTTTCGCAACACAA+CGG | - | chr2.1:43441605-43441624 | MS.gene75904:intron | 45.0% |
!! | TGTTGCTTTCGCAACACAAC+GGG | - | chr2.1:43441606-43441625 | MS.gene75904:intron | 45.0% |
AACGGTTAGAATCTTGGCGG+CGG | + | chr2.1:43442154-43442173 | None:intergenic | 50.0% | |
CGTTCCATCTGGAGATGAAC+CGG | - | chr2.1:43442410-43442429 | MS.gene75904:CDS | 50.0% | |
! | CTTGTTGTGGCTTCTTCGGT+GGG | + | chr2.1:43441355-43441374 | None:intergenic | 50.0% |
! | GTTGCTTTCGCAACACAACG+GGG | - | chr2.1:43441607-43441626 | MS.gene75904:intron | 50.0% |
! | TCTTGTTGTGGCTTCTTCGG+TGG | + | chr2.1:43441356-43441375 | None:intergenic | 50.0% |
!! | TTCACCGGTTCATCTCCAGA+TGG | + | chr2.1:43442417-43442436 | None:intergenic | 50.0% |
AACCTGTTAATGCCGCGGCT+AGG | + | chr2.1:43441535-43441554 | None:intergenic | 55.0% | |
ACCTGTTAATGCCGCGGCTA+GGG | + | chr2.1:43441534-43441553 | None:intergenic | 55.0% | |
TGGCGGCGGAGAAATCATGA+AGG | + | chr2.1:43442140-43442159 | None:intergenic | 55.0% | |
TTGTGGCTTCTTCGGTGGGT+AGG | + | chr2.1:43441351-43441370 | None:intergenic | 55.0% | |
ATCGCACACTTCCCTAGCCG+CGG | - | chr2.1:43441520-43441539 | MS.gene75904:intron | 60.0% | |
TCCCTAGCCGCGGCATTAAC+AGG | - | chr2.1:43441530-43441549 | MS.gene75904:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 43441280 | 43442791 | 43441280 | ID=MS.gene75904 |
chr2.1 | mRNA | 43441280 | 43442791 | 43441280 | ID=MS.gene75904.t1;Parent=MS.gene75904 |
chr2.1 | exon | 43441880 | 43442791 | 43441880 | ID=MS.gene75904.t1.exon1;Parent=MS.gene75904.t1 |
chr2.1 | CDS | 43441880 | 43442791 | 43441880 | ID=cds.MS.gene75904.t1;Parent=MS.gene75904.t1 |
chr2.1 | exon | 43441616 | 43441663 | 43441616 | ID=MS.gene75904.t1.exon2;Parent=MS.gene75904.t1 |
chr2.1 | CDS | 43441616 | 43441663 | 43441616 | ID=cds.MS.gene75904.t1;Parent=MS.gene75904.t1 |
chr2.1 | exon | 43441280 | 43441375 | 43441280 | ID=MS.gene75904.t1.exon3;Parent=MS.gene75904.t1 |
chr2.1 | CDS | 43441280 | 43441375 | 43441280 | ID=cds.MS.gene75904.t1;Parent=MS.gene75904.t1 |
Gene Sequence |
Protein sequence |