Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09996.t1 | KEH43362.1 | 80.6 | 459 | 41 | 1 | 1 | 459 | 1 | 411 | 1.70E-205 | 725.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09996.t1 | Q9FFU7 | 30.0 | 447 | 274 | 13 | 7 | 429 | 7 | 438 | 1.1e-46 | 189.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09996.t1 | A0A072VNK9 | 80.6 | 459 | 41 | 1 | 1 | 459 | 1 | 411 | 1.3e-205 | 725.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09996.t1 | MTR_1g090903 | 80.174 | 459 | 43 | 1 | 1 | 459 | 1 | 411 | 0.0 | 699 |
| MS.gene09996.t1 | MTR_1g090907 | 68.831 | 462 | 134 | 6 | 1 | 459 | 1 | 455 | 0.0 | 618 |
| MS.gene09996.t1 | MTR_2g048140 | 67.749 | 462 | 140 | 6 | 1 | 459 | 1 | 456 | 0.0 | 613 |
| MS.gene09996.t1 | MTR_3g448340 | 35.637 | 463 | 274 | 12 | 4 | 453 | 3 | 454 | 1.01e-77 | 249 |
| MS.gene09996.t1 | MTR_5g080150 | 33.584 | 399 | 220 | 8 | 7 | 398 | 5 | 365 | 1.61e-61 | 205 |
| MS.gene09996.t1 | MTR_3g049530 | 29.752 | 484 | 241 | 14 | 4 | 458 | 3 | 416 | 3.36e-44 | 160 |
| MS.gene09996.t1 | MTR_1g071060 | 81.111 | 90 | 17 | 0 | 37 | 126 | 7 | 96 | 2.36e-43 | 148 |
| MS.gene09996.t1 | MTR_7g029260 | 38.739 | 111 | 67 | 1 | 322 | 431 | 49 | 159 | 1.03e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09996.t1 | AT5G54820 | 29.978 | 447 | 274 | 13 | 7 | 429 | 7 | 438 | 3.23e-53 | 186 |
| MS.gene09996.t1 | AT1G56400 | 30.189 | 424 | 272 | 11 | 7 | 417 | 13 | 425 | 6.82e-53 | 185 |
| MS.gene09996.t1 | AT3G62230 | 28.416 | 461 | 311 | 13 | 7 | 457 | 8 | 459 | 8.22e-51 | 179 |
| MS.gene09996.t1 | AT3G29830 | 31.435 | 439 | 268 | 17 | 7 | 427 | 8 | 431 | 5.72e-47 | 169 |
| MS.gene09996.t1 | AT3G29830 | 30.524 | 439 | 273 | 16 | 7 | 427 | 8 | 432 | 5.42e-45 | 163 |
| MS.gene09996.t1 | AT1G56400 | 30.508 | 354 | 223 | 10 | 75 | 417 | 43 | 384 | 2.29e-42 | 155 |
| MS.gene09996.t1 | AT2G17305 | 34.932 | 146 | 85 | 5 | 297 | 439 | 106 | 244 | 8.69e-17 | 80.9 |
| MS.gene09996.t1 | AT3G28410 | 24.054 | 370 | 233 | 14 | 4 | 360 | 25 | 359 | 4.18e-12 | 68.6 |
Find 65 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAAATACTTCAAGTATTC+TGG | 0.119443 | 1.4:-72333739 | MS.gene09996:CDS |
| TTACAGACCTTGAGAAATTT+TGG | 0.162868 | 1.4:-72333105 | MS.gene09996:CDS |
| AAGTCAACAAGTTATATTTA+AGG | 0.205513 | 1.4:-72333271 | MS.gene09996:intron |
| AAATCATTCTCATTCCATTT+AGG | 0.218782 | 1.4:+72334090 | None:intergenic |
| TTGATTTCTCTAATCCTAAA+TGG | 0.228700 | 1.4:-72334104 | MS.gene09996:CDS |
| TGCACTCAAAGACCTTTCTT+TGG | 0.273300 | 1.4:-72333950 | MS.gene09996:CDS |
| AGCAACAAGTCCTAAGTTCT+TGG | 0.287063 | 1.4:+72333005 | None:intergenic |
| TTTCTCAAGGTCTGTAAGAT+AGG | 0.287636 | 1.4:+72333111 | None:intergenic |
| CCGAAGTTGAATCGACAAAA+AGG | 0.297834 | 1.4:+72334307 | None:intergenic |
| TACTTGAAGTATTTAAGATT+TGG | 0.310198 | 1.4:+72333745 | None:intergenic |
| GCACTCAAAGACCTTTCTTT+GGG | 0.333998 | 1.4:-72333949 | MS.gene09996:CDS |
| TCTGAAGAGGTGTTGGGATT+TGG | 0.338041 | 1.4:-72333857 | MS.gene09996:CDS |
| TCTACCTCTTCTATAACATT+TGG | 0.363653 | 1.4:+72333685 | None:intergenic |
| CTCAAAGATATTGTACAACT+TGG | 0.380226 | 1.4:-72333823 | MS.gene09996:CDS |
| TTAAATACTTCAAGTATTCT+GGG | 0.388380 | 1.4:-72333738 | MS.gene09996:CDS |
| GATAAACATGTGTTGGCAAT+TGG | 0.395256 | 1.4:+72334046 | None:intergenic |
| TCTAATGAAAGGGAAAGCTT+TGG | 0.395771 | 1.4:-72332981 | MS.gene09996:CDS |
| GCACCAAAGTTAAGAAAATT+CGG | 0.399622 | 1.4:+72333970 | None:intergenic |
| ATGCATAAATATGAGCTTTG+TGG | 0.400472 | 1.4:-72333348 | MS.gene09996:CDS |
| AACAGATTAATATTAAGTTA+TGG | 0.414219 | 1.4:-72332958 | MS.gene09996:CDS |
| TGCAAATTCTCTGAACGCTC+TGG | 0.416716 | 1.4:+72332878 | None:intergenic |
| ATTTGAGTCTGAAGAGGTGT+TGG | 0.416726 | 1.4:-72333864 | MS.gene09996:CDS |
| ATTGCGGGAAGAAGTGATTC+TGG | 0.429320 | 1.4:+72334426 | None:intergenic |
| CTTGTTGCTTTCTAATGAAA+GGG | 0.435494 | 1.4:-72332991 | MS.gene09996:CDS |
| TTTGAGTCTGAAGAGGTGTT+GGG | 0.435529 | 1.4:-72333863 | MS.gene09996:CDS |
| TCAAAGACCTTTCTTTGGGT+TGG | 0.435585 | 1.4:-72333945 | MS.gene09996:CDS |
| ATTAAGTTATGGAATGAAGA+TGG | 0.439836 | 1.4:-72332947 | MS.gene09996:CDS |
| AATGCTTGCAAAATACTTTG+AGG | 0.447199 | 1.4:-72333060 | MS.gene09996:CDS |
| GAAGAGGTGTTGGGATTTGG+TGG | 0.462276 | 1.4:-72333854 | MS.gene09996:CDS |
| TTAAGTTATGGAATGAAGAT+GGG | 0.463289 | 1.4:-72332946 | MS.gene09996:CDS |
| TTGTTTCCCCACAAGTTTGA+GGG | 0.465128 | 1.4:+72334178 | None:intergenic |
| TAAATGGAATGAGAATGATT+TGG | 0.468215 | 1.4:-72334088 | MS.gene09996:CDS |
| ATGCTTGCAAAATACTTTGA+GGG | 0.470267 | 1.4:-72333059 | MS.gene09996:CDS |
| ACTTGTTGCTTTCTAATGAA+AGG | 0.474911 | 1.4:-72332992 | MS.gene09996:CDS |
| CCAACACATGTTTATCAACT+CGG | 0.480856 | 1.4:-72334039 | MS.gene09996:CDS |
| TTCAATAAACTTCATGCCAA+TGG | 0.482452 | 1.4:-72333637 | MS.gene09996:CDS |
| AGTATGATAGAAATGATTGC+GGG | 0.485402 | 1.4:+72334411 | None:intergenic |
| GAGCCACAAGCCAAGAACTT+AGG | 0.485470 | 1.4:-72333015 | MS.gene09996:CDS |
| TTTCGAACCCTCAAACTTGT+GGG | 0.496909 | 1.4:-72334185 | MS.gene09996:CDS |
| ATTGTTTCCCCACAAGTTTG+AGG | 0.516839 | 1.4:+72334177 | None:intergenic |
| TTCTCAAGGTCTGTAAGATA+GGG | 0.517184 | 1.4:+72333112 | None:intergenic |
| CTTCAATCCAACCCAAAGAA+AGG | 0.520129 | 1.4:+72333938 | None:intergenic |
| GTTTCGAACCCTCAAACTTG+TGG | 0.529919 | 1.4:-72334186 | MS.gene09996:CDS |
| CAAAGATGCTAAGATTCTAA+CGG | 0.537673 | 1.4:-72333590 | MS.gene09996:CDS |
| GTTTAAGTCAATGTTCTCAC+CGG | 0.538007 | 1.4:+72334335 | None:intergenic |
| ACATGTTTATCAACTCGGAT+TGG | 0.548056 | 1.4:-72334034 | MS.gene09996:CDS |
| AGTCCTAAGTTCTTGGCTTG+TGG | 0.551466 | 1.4:+72333012 | None:intergenic |
| TCACTAAAATTGTATTCATG+TGG | 0.554082 | 1.4:-72334003 | MS.gene09996:CDS |
| TCAAAGATATTGTACAACTT+GGG | 0.557071 | 1.4:-72333822 | MS.gene09996:CDS |
| GTCACTAGGTCACCTGCAGA+TGG | 0.558055 | 1.4:+72333423 | None:intergenic |
| CAGTATTTGACATAGTCCAT+TGG | 0.560520 | 1.4:+72333621 | None:intergenic |
| CCGAGTTGATAAACATGTGT+TGG | 0.566603 | 1.4:+72334039 | None:intergenic |
| TTGAGAATTTGAGTCTGAAG+AGG | 0.567770 | 1.4:-72333870 | MS.gene09996:CDS |
| GCGTTTGCCAAAATTTCTCA+AGG | 0.569849 | 1.4:+72333098 | None:intergenic |
| GTTAAGGATACATGTTGCAA+CGG | 0.571660 | 1.4:+72334383 | None:intergenic |
| GAGAAAACTTGTTAATTCGA+CGG | 0.572982 | 1.4:+72334214 | None:intergenic |
| TGGTTAAGGATACAACAATC+CGG | 0.589501 | 1.4:-72334354 | MS.gene09996:CDS |
| AAGTCCAAATGTTATAGAAG+AGG | 0.593335 | 1.4:-72333689 | MS.gene09996:CDS |
| TAAATACTTCAAGTATTCTG+GGG | 0.613240 | 1.4:-72333737 | MS.gene09996:CDS |
| GGTTTGCAGCTATCTACTCC+AGG | 0.619785 | 1.4:-72333569 | MS.gene09996:intron |
| GTAAACGTTGTGCACGTCGA+CGG | 0.623132 | 1.4:+72332909 | None:intergenic |
| TTCGAACCCTCAAACTTGTG+GGG | 0.625727 | 1.4:-72334184 | MS.gene09996:CDS |
| TAAGTTATGGAATGAAGATG+GGG | 0.628981 | 1.4:-72332945 | MS.gene09996:CDS |
| GAGTATGATAGAAATGATTG+CGG | 0.639552 | 1.4:+72334410 | None:intergenic |
| GTTGCTTTCGTGACACAACG+CGG | 0.780634 | 1.4:-72334144 | MS.gene09996:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAGATTAATATTAAGTTA+TGG | - | chr1.4:72334366-72334385 | MS.gene09996:CDS | 15.0% |
| !! | AAGTCAACAAGTTATATTTA+AGG | - | chr1.4:72334053-72334072 | MS.gene09996:CDS | 20.0% |
| !! | TTAAATACTTCAAGTATTCT+GGG | - | chr1.4:72333586-72333605 | MS.gene09996:CDS | 20.0% |
| !!! | TACAGTGATATTTGTTATTA+AGG | - | chr1.4:72333832-72333851 | MS.gene09996:CDS | 20.0% |
| !!! | TACTTGAAGTATTTAAGATT+TGG | + | chr1.4:72333582-72333601 | None:intergenic | 20.0% |
| !!! | TTTATTGAATTTTGTTTCTG+TGG | + | chr1.4:72333676-72333695 | None:intergenic | 20.0% |
| ! | AAATCATTCTCATTCCATTT+AGG | + | chr1.4:72333237-72333256 | None:intergenic | 25.0% |
| ! | ATCAATAAAATTAGTGTACC+TGG | + | chr1.4:72333776-72333795 | None:intergenic | 25.0% |
| ! | ATTAAGTTATGGAATGAAGA+TGG | - | chr1.4:72334377-72334396 | MS.gene09996:CDS | 25.0% |
| ! | CATGTATCCTTAACAAAAAA+TGG | - | chr1.4:72332950-72332969 | MS.gene09996:CDS | 25.0% |
| ! | CTTAAATACTTCAAGTATTC+TGG | - | chr1.4:72333585-72333604 | MS.gene09996:CDS | 25.0% |
| ! | TAAATACTTCAAGTATTCTG+GGG | - | chr1.4:72333587-72333606 | MS.gene09996:CDS | 25.0% |
| ! | TAAATGGAATGAGAATGATT+TGG | - | chr1.4:72333236-72333255 | MS.gene09996:intron | 25.0% |
| ! | TCAAAGATATTGTACAACTT+GGG | - | chr1.4:72333502-72333521 | MS.gene09996:intron | 25.0% |
| ! | TCACTAAAATTGTATTCATG+TGG | - | chr1.4:72333321-72333340 | MS.gene09996:CDS | 25.0% |
| ! | TCCTTAACAAAAAATGGTTA+AGG | - | chr1.4:72332956-72332975 | MS.gene09996:CDS | 25.0% |
| ! | TTAAGTTATGGAATGAAGAT+GGG | - | chr1.4:72334378-72334397 | MS.gene09996:CDS | 25.0% |
| ! | TTGATTTCTCTAATCCTAAA+TGG | - | chr1.4:72333220-72333239 | MS.gene09996:intron | 25.0% |
| !! | AATTAACAAGTTTTCTCTCA+TGG | - | chr1.4:72333116-72333135 | MS.gene09996:CDS | 25.0% |
| !! | TGTTTTCTCGTATATATTAC+AGG | - | chr1.4:72334178-72334197 | MS.gene09996:CDS | 25.0% |
| !!! | TCATCGACTTTATCAAAAAT+TGG | - | chr1.4:72333070-72333089 | MS.gene09996:CDS | 25.0% |
| !!! | TCCTTAACCATTTTTTGTTA+AGG | + | chr1.4:72332960-72332979 | None:intergenic | 25.0% |
| !!! | TCTTTTGTTATGCACAAAAA+AGG | - | chr1.4:72333873-72333892 | MS.gene09996:CDS | 25.0% |
| AAGTCCAAATGTTATAGAAG+AGG | - | chr1.4:72333635-72333654 | MS.gene09996:CDS | 30.0% | |
| AATGCTTGCAAAATACTTTG+AGG | - | chr1.4:72334264-72334283 | MS.gene09996:CDS | 30.0% | |
| ACAACTTGGGTTAAAAAGAT+TGG | - | chr1.4:72333515-72333534 | MS.gene09996:intron | 30.0% | |
| AGTATGATAGAAATGATTGC+GGG | + | chr1.4:72332916-72332935 | None:intergenic | 30.0% | |
| ATGCATAAATATGAGCTTTG+TGG | - | chr1.4:72333976-72333995 | MS.gene09996:CDS | 30.0% | |
| ATGCTTGCAAAATACTTTGA+GGG | - | chr1.4:72334265-72334284 | MS.gene09996:CDS | 30.0% | |
| CAAAGATGCTAAGATTCTAA+CGG | - | chr1.4:72333734-72333753 | MS.gene09996:CDS | 30.0% | |
| CTCAAAGATATTGTACAACT+TGG | - | chr1.4:72333501-72333520 | MS.gene09996:intron | 30.0% | |
| GAGTATGATAGAAATGATTG+CGG | + | chr1.4:72332917-72332936 | None:intergenic | 30.0% | |
| GCACCAAAGTTAAGAAAATT+CGG | + | chr1.4:72333357-72333376 | None:intergenic | 30.0% | |
| TAAGTTATGGAATGAAGATG+GGG | - | chr1.4:72334379-72334398 | MS.gene09996:CDS | 30.0% | |
| TCTACCTCTTCTATAACATT+TGG | + | chr1.4:72333642-72333661 | None:intergenic | 30.0% | |
| TTCAATAAACTTCATGCCAA+TGG | - | chr1.4:72333687-72333706 | MS.gene09996:CDS | 30.0% | |
| ! | ATGCCGAATTTTCTTAACTT+TGG | - | chr1.4:72333351-72333370 | MS.gene09996:CDS | 30.0% |
| ! | TTACAGACCTTGAGAAATTT+TGG | - | chr1.4:72334219-72334238 | MS.gene09996:CDS | 30.0% |
| !! | ACTTGTTGCTTTCTAATGAA+AGG | - | chr1.4:72334332-72334351 | MS.gene09996:CDS | 30.0% |
| !! | CTTGTTGCTTTCTAATGAAA+GGG | - | chr1.4:72334333-72334352 | MS.gene09996:CDS | 30.0% |
| !! | GAGAAAACTTGTTAATTCGA+CGG | + | chr1.4:72333113-72333132 | None:intergenic | 30.0% |
| !!! | AACGTTTTGAGAGTATTGAT+GGG | + | chr1.4:72333414-72333433 | None:intergenic | 30.0% |
| !!! | AATGTGAGTTTTTCAAGCAA+CGG | + | chr1.4:72334027-72334046 | None:intergenic | 30.0% |
| ACATGTTTATCAACTCGGAT+TGG | - | chr1.4:72333290-72333309 | MS.gene09996:CDS | 35.0% | |
| CAGTATTTGACATAGTCCAT+TGG | + | chr1.4:72333706-72333725 | None:intergenic | 35.0% | |
| CCAACACATGTTTATCAACT+CGG | - | chr1.4:72333285-72333304 | MS.gene09996:CDS | 35.0% | |
| GTTAAGGATACATGTTGCAA+CGG | + | chr1.4:72332944-72332963 | None:intergenic | 35.0% | |
| GTTGCTTGAAAAACTCACAT+TGG | - | chr1.4:72334026-72334045 | MS.gene09996:CDS | 35.0% | |
| GTTTAAGTCAATGTTCTCAC+CGG | + | chr1.4:72332992-72333011 | None:intergenic | 35.0% | |
| TCTAATGAAAGGGAAAGCTT+TGG | - | chr1.4:72334343-72334362 | MS.gene09996:CDS | 35.0% | |
| TGGTTAAGGATACAACAATC+CGG | - | chr1.4:72332970-72332989 | MS.gene09996:CDS | 35.0% | |
| TTCTCAAGGTCTGTAAGATA+GGG | + | chr1.4:72334215-72334234 | None:intergenic | 35.0% | |
| TTGAGAATTTGAGTCTGAAG+AGG | - | chr1.4:72333454-72333473 | MS.gene09996:intron | 35.0% | |
| TTTCTCAAGGTCTGTAAGAT+AGG | + | chr1.4:72334216-72334235 | None:intergenic | 35.0% | |
| ! | GATAAACATGTGTTGGCAAT+TGG | + | chr1.4:72333281-72333300 | None:intergenic | 35.0% |
| ! | TTTTTGTACTCACTGTCACT+AGG | + | chr1.4:72333918-72333937 | None:intergenic | 35.0% |
| !!! | ATGTGAGTTTTTCAAGCAAC+GGG | + | chr1.4:72334026-72334045 | None:intergenic | 35.0% |
| !!! | CAACGTTTTGAGAGTATTGA+TGG | + | chr1.4:72333415-72333434 | None:intergenic | 35.0% |
| !!! | CCTTTTTGTCGATTCAACTT+CGG | - | chr1.4:72333017-72333036 | MS.gene09996:CDS | 35.0% |
| AGCAACAAGTCCTAAGTTCT+TGG | + | chr1.4:72334322-72334341 | None:intergenic | 40.0% | |
| ATTGTTTCCCCACAAGTTTG+AGG | + | chr1.4:72333150-72333169 | None:intergenic | 40.0% | |
| CCGAAGTTGAATCGACAAAA+AGG | + | chr1.4:72333020-72333039 | None:intergenic | 40.0% | |
| CTTCAATCCAACCCAAAGAA+AGG | + | chr1.4:72333389-72333408 | None:intergenic | 40.0% | |
| GCACTCAAAGACCTTTCTTT+GGG | - | chr1.4:72333375-72333394 | MS.gene09996:CDS | 40.0% | |
| GCGTTTGCCAAAATTTCTCA+AGG | + | chr1.4:72334229-72334248 | None:intergenic | 40.0% | |
| TCAAAGACCTTTCTTTGGGT+TGG | - | chr1.4:72333379-72333398 | MS.gene09996:CDS | 40.0% | |
| TGCACTCAAAGACCTTTCTT+TGG | - | chr1.4:72333374-72333393 | MS.gene09996:CDS | 40.0% | |
| TTGTTTCCCCACAAGTTTGA+GGG | + | chr1.4:72333149-72333168 | None:intergenic | 40.0% | |
| TTTCGAACCCTCAAACTTGT+GGG | - | chr1.4:72333139-72333158 | MS.gene09996:intron | 40.0% | |
| ! | ATTTGAGTCTGAAGAGGTGT+TGG | - | chr1.4:72333460-72333479 | MS.gene09996:intron | 40.0% |
| !! | CCGAGTTGATAAACATGTGT+TGG | + | chr1.4:72333288-72333307 | None:intergenic | 40.0% |
| !! | TTTGAGTCTGAAGAGGTGTT+GGG | - | chr1.4:72333461-72333480 | MS.gene09996:intron | 40.0% |
| AAAAAGGTTGCTCCATCTGC+AGG | - | chr1.4:72333889-72333908 | MS.gene09996:CDS | 45.0% | |
| ATTGCGGGAAGAAGTGATTC+TGG | + | chr1.4:72332901-72332920 | None:intergenic | 45.0% | |
| GTTTCGAACCCTCAAACTTG+TGG | - | chr1.4:72333138-72333157 | MS.gene09996:intron | 45.0% | |
| TGCAAATTCTCTGAACGCTC+TGG | + | chr1.4:72334449-72334468 | None:intergenic | 45.0% | |
| TTCGAACCCTCAAACTTGTG+GGG | - | chr1.4:72333140-72333159 | MS.gene09996:intron | 45.0% | |
| ! | AGTCCTAAGTTCTTGGCTTG+TGG | + | chr1.4:72334315-72334334 | None:intergenic | 45.0% |
| !! | TCTGAAGAGGTGTTGGGATT+TGG | - | chr1.4:72333467-72333486 | MS.gene09996:intron | 45.0% |
| GAGCCACAAGCCAAGAACTT+AGG | - | chr1.4:72334309-72334328 | MS.gene09996:CDS | 50.0% | |
| GGTTTGCAGCTATCTACTCC+AGG | - | chr1.4:72333755-72333774 | MS.gene09996:CDS | 50.0% | |
| GTAAACGTTGTGCACGTCGA+CGG | + | chr1.4:72334418-72334437 | None:intergenic | 50.0% | |
| ! | GTTGCTTTCGTGACACAACG+CGG | - | chr1.4:72333180-72333199 | MS.gene09996:intron | 50.0% |
| !! | GAAGAGGTGTTGGGATTTGG+TGG | - | chr1.4:72333470-72333489 | MS.gene09996:intron | 50.0% |
| GTCACTAGGTCACCTGCAGA+TGG | + | chr1.4:72333904-72333923 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 72332862 | 72334484 | 72332862 | ID=MS.gene09996 |
| chr1.4 | mRNA | 72332862 | 72334484 | 72332862 | ID=MS.gene09996.t1;Parent=MS.gene09996 |
| chr1.4 | exon | 72333570 | 72334484 | 72333570 | ID=MS.gene09996.t1.exon1;Parent=MS.gene09996.t1 |
| chr1.4 | CDS | 72333570 | 72334484 | 72333570 | ID=cds.MS.gene09996.t1;Parent=MS.gene09996.t1 |
| chr1.4 | exon | 72333272 | 72333451 | 72333272 | ID=MS.gene09996.t1.exon2;Parent=MS.gene09996.t1 |
| chr1.4 | CDS | 72333272 | 72333451 | 72333272 | ID=cds.MS.gene09996.t1;Parent=MS.gene09996.t1 |
| chr1.4 | exon | 72332862 | 72333146 | 72332862 | ID=MS.gene09996.t1.exon3;Parent=MS.gene09996.t1 |
| chr1.4 | CDS | 72332862 | 72333146 | 72332862 | ID=cds.MS.gene09996.t1;Parent=MS.gene09996.t1 |
| Gene Sequence |
| Protein sequence |