Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09997.t1 | XP_013469325.1 | 91 | 455 | 41 | 0 | 1 | 455 | 1 | 455 | 1.60E-238 | 835.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09997.t1 | Q9FFU7 | 30.0 | 436 | 278 | 10 | 10 | 425 | 10 | 438 | 2.9e-52 | 207.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09997.t1 | A0A072VPR4 | 91.0 | 455 | 41 | 0 | 1 | 455 | 1 | 455 | 1.1e-238 | 835.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09997.t1 | MTR_1g090907 | 90.989 | 455 | 41 | 0 | 1 | 455 | 1 | 455 | 0.0 | 848 |
| MS.gene09997.t1 | MTR_2g048140 | 81.798 | 456 | 82 | 1 | 1 | 455 | 1 | 456 | 0.0 | 759 |
| MS.gene09997.t1 | MTR_1g090903 | 61.050 | 457 | 130 | 5 | 1 | 455 | 1 | 411 | 0.0 | 520 |
| MS.gene09997.t1 | MTR_3g448340 | 35.470 | 468 | 269 | 12 | 5 | 452 | 4 | 458 | 2.73e-81 | 259 |
| MS.gene09997.t1 | MTR_5g080150 | 34.988 | 403 | 219 | 8 | 9 | 403 | 7 | 374 | 2.16e-65 | 215 |
| MS.gene09997.t1 | MTR_3g049530 | 30.353 | 481 | 236 | 16 | 4 | 453 | 3 | 415 | 9.42e-51 | 177 |
| MS.gene09997.t1 | MTR_1g071060 | 72.222 | 90 | 25 | 0 | 39 | 128 | 7 | 96 | 3.51e-38 | 134 |
| MS.gene09997.t1 | MTR_7g029260 | 35.714 | 126 | 80 | 1 | 303 | 427 | 34 | 159 | 2.07e-17 | 81.6 |
| MS.gene09997.t1 | MTR_2g072720 | 25.641 | 468 | 279 | 21 | 2 | 433 | 25 | 459 | 2.14e-12 | 69.3 |
| MS.gene09997.t1 | MTR_8g468470 | 21.983 | 464 | 309 | 19 | 3 | 436 | 10 | 450 | 2.68e-12 | 68.9 |
| MS.gene09997.t1 | MTR_5g066890 | 35.955 | 89 | 51 | 3 | 318 | 404 | 1 | 85 | 8.47e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09997.t1 | AT5G54820 | 29.977 | 437 | 279 | 10 | 9 | 425 | 9 | 438 | 4.19e-59 | 201 |
| MS.gene09997.t1 | AT1G56400 | 29.362 | 470 | 287 | 12 | 12 | 444 | 18 | 479 | 9.47e-59 | 200 |
| MS.gene09997.t1 | AT3G62230 | 27.293 | 458 | 314 | 12 | 8 | 453 | 9 | 459 | 7.05e-52 | 182 |
| MS.gene09997.t1 | AT3G29830 | 29.954 | 434 | 271 | 13 | 10 | 423 | 11 | 431 | 6.41e-51 | 179 |
| MS.gene09997.t1 | AT3G29830 | 29.466 | 431 | 278 | 12 | 10 | 423 | 11 | 432 | 1.99e-49 | 175 |
| MS.gene09997.t1 | AT1G56400 | 30.250 | 400 | 235 | 11 | 82 | 444 | 46 | 438 | 1.34e-48 | 172 |
| MS.gene09997.t1 | AT2G17305 | 31.707 | 164 | 107 | 3 | 295 | 454 | 106 | 268 | 3.69e-19 | 87.4 |
| MS.gene09997.t1 | AT3G58940 | 26.277 | 274 | 152 | 12 | 6 | 252 | 1 | 251 | 8.96e-12 | 67.8 |
| MS.gene09997.t1 | AT3G58940 | 26.277 | 274 | 152 | 12 | 6 | 252 | 1 | 251 | 8.96e-12 | 67.8 |
| MS.gene09997.t1 | AT3G28410 | 20.972 | 391 | 260 | 12 | 12 | 391 | 33 | 385 | 5.65e-11 | 64.7 |
| MS.gene09997.t1 | AT5G56370 | 23.210 | 405 | 255 | 16 | 9 | 402 | 4 | 363 | 8.64e-11 | 63.9 |
| MS.gene09997.t1 | AT5G56370 | 23.210 | 405 | 255 | 16 | 9 | 402 | 4 | 363 | 8.64e-11 | 63.9 |
Find 78 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAAATACTTCAAATATTC+TGG | 0.116368 | 1.4:-72344265 | MS.gene09997:CDS |
| TTGATTTCTCTGATCCTAAA+TGG | 0.158820 | 1.4:-72344627 | MS.gene09997:CDS |
| AAGTAGACCTTAAGAAATTT+TGG | 0.209673 | 1.4:-72343575 | MS.gene09997:CDS |
| AAATTGTTATCTTCCCATTT+AGG | 0.210930 | 1.4:+72344613 | None:intergenic |
| CGCAAATTCTTTGAACGCTT+TGG | 0.247622 | 1.4:+72343348 | None:intergenic |
| TCTTGAGAATTGTTGGAATT+TGG | 0.254022 | 1.4:-72344380 | MS.gene09997:CDS |
| GAATTTGGCAAACTTTGATT+TGG | 0.267542 | 1.4:-72344365 | MS.gene09997:CDS |
| AAAATTTGTTATCAACTTGT+AGG | 0.276512 | 1.4:-72344420 | MS.gene09997:CDS |
| TGCACTCAAAGATTTGTCTT+TGG | 0.298466 | 1.4:-72344473 | MS.gene09997:CDS |
| GCTCAAAAGCTGCCCATTGC+TGG | 0.325341 | 1.4:-72343787 | MS.gene09997:CDS |
| TATTTGAAGTATTTAAGATT+TGG | 0.333013 | 1.4:+72344271 | None:intergenic |
| ATCAATGTCTACCTCTTCTA+TGG | 0.339261 | 1.4:+72344210 | None:intergenic |
| TAAATGGGAAGATAACAATT+TGG | 0.344219 | 1.4:-72344611 | MS.gene09997:CDS |
| ATATCTTTAACCAGTTGTTT+AGG | 0.344304 | 1.4:+72344887 | None:intergenic |
| ATTTCTTAAGGTCTACTTGA+TGG | 0.344830 | 1.4:+72343580 | None:intergenic |
| GCACTCAAAGATTTGTCTTT+GGG | 0.346946 | 1.4:-72344472 | MS.gene09997:CDS |
| TCTTATGCAAGGAAAAGTTT+TGG | 0.354339 | 1.4:-72343451 | MS.gene09997:CDS |
| GTTTGAGTCTTGAGAATTGT+TGG | 0.356911 | 1.4:-72344387 | MS.gene09997:CDS |
| ATTGCAAGACGAAGTGATTC+TGG | 0.358588 | 1.4:+72344955 | None:intergenic |
| GATAAACCTGCGTTGGCAAT+TGG | 0.365643 | 1.4:+72344569 | None:intergenic |
| AGAGTTCATTGCCACGTTCA+TGG | 0.376627 | 1.4:+72344167 | None:intergenic |
| AGTCATAAGTTCTTCATTTG+TGG | 0.376656 | 1.4:+72343482 | None:intergenic |
| AATTTGGCAAACTTTGATTT+GGG | 0.381661 | 1.4:-72344364 | MS.gene09997:CDS |
| TAAACAACTGGTTAAAGATA+TGG | 0.390128 | 1.4:-72344885 | MS.gene09997:CDS |
| TTAAATACTTCAAATATTCT+GGG | 0.391463 | 1.4:-72344264 | MS.gene09997:CDS |
| TGTTCTCCTTGCGGCTTCTT+CGG | 0.394545 | 1.4:+72344915 | None:intergenic |
| ATCGAAATTGATGTGGTCTT+CGG | 0.395752 | 1.4:+72344858 | None:intergenic |
| TTGAAGGTGGTAGAAGTAAT+CGG | 0.408674 | 1.4:-72343513 | MS.gene09997:CDS |
| GAGTTTGCCAAAATTTCTTA+AGG | 0.408773 | 1.4:+72343568 | None:intergenic |
| TTCAAATCCACAAAGCTCAT+AGG | 0.414020 | 1.4:+72343815 | None:intergenic |
| ATGCATCCCTATGAGCTTTG+TGG | 0.415004 | 1.4:-72343822 | MS.gene09997:CDS |
| ACTGCAAACTGTTAGAATCT+TGG | 0.420814 | 1.4:+72344117 | None:intergenic |
| TTTCTTAAGGTCTACTTGAT+GGG | 0.428036 | 1.4:+72343581 | None:intergenic |
| CTCCTTGCGGCTTCTTCGGA+AGG | 0.435231 | 1.4:+72344919 | None:intergenic |
| TCATCGACTTCATCACAAAC+TGG | 0.438278 | 1.4:-72344777 | MS.gene09997:CDS |
| TTACTTCAGATGTAAATGTA+AGG | 0.455810 | 1.4:-72344234 | MS.gene09997:CDS |
| GAACAAGTATCCTAAACAAC+TGG | 0.457299 | 1.4:-72344897 | MS.gene09997:CDS |
| TGATTTCTCTGATCCTAAAT+GGG | 0.458338 | 1.4:-72344626 | MS.gene09997:CDS |
| TTTCAAACCCTCAAACTTGT+GGG | 0.475584 | 1.4:-72344708 | MS.gene09997:CDS |
| TCAAAGATTTGTCTTTGGGT+TGG | 0.475817 | 1.4:-72344468 | MS.gene09997:CDS |
| TTGTTTCCCCACAAGTTTGA+GGG | 0.476639 | 1.4:+72344701 | None:intergenic |
| AGCACTTGGATTAACAAGAT+TGG | 0.479484 | 1.4:-72344335 | MS.gene09997:CDS |
| TGTTCCATCCGGAGATGAAT+CGG | 0.486372 | 1.4:-72343895 | MS.gene09997:CDS |
| TGGCATGTTATTTCTTGCCA+TGG | 0.492796 | 1.4:+72344993 | None:intergenic |
| ATTAAGTTGTCGAATGAAGA+TGG | 0.494144 | 1.4:-72343417 | MS.gene09997:CDS |
| CATCCGCTCCGATTCATCTC+CGG | 0.508668 | 1.4:+72343887 | None:intergenic |
| AAGTCCACAAGTTATATTTG+AGG | 0.508872 | 1.4:-72343745 | MS.gene09997:intron |
| TCAAATCCACAAAGCTCATA+GGG | 0.508994 | 1.4:+72343816 | None:intergenic |
| ACTTGTTGCTTTCTTATGCA+AGG | 0.514283 | 1.4:-72343462 | MS.gene09997:CDS |
| TTCTTAAGGTCTACTTGATG+GGG | 0.518779 | 1.4:+72343582 | None:intergenic |
| CCAACGCAGGTTTATCAACT+CGG | 0.534120 | 1.4:-72344562 | MS.gene09997:CDS |
| AGTTTGCAGTTATTTACTCC+AGG | 0.537677 | 1.4:-72344104 | MS.gene09997:intron |
| ATTGTTTCCCCACAAGTTTG+AGG | 0.540471 | 1.4:+72344700 | None:intergenic |
| ATTTCAAACCCTCAAACTTG+TGG | 0.540788 | 1.4:-72344709 | MS.gene09997:CDS |
| ACTTGGATTAACAAGATTGG+TGG | 0.553442 | 1.4:-72344332 | MS.gene09997:CDS |
| GTTGTCGAATGAAGATGGTA+AGG | 0.554984 | 1.4:-72343412 | MS.gene09997:CDS |
| TACTTCAGATGTAAATGTAA+GGG | 0.555889 | 1.4:-72344233 | MS.gene09997:CDS |
| TTGCGGCTTCTTCGGAAGGT+AGG | 0.559549 | 1.4:+72344923 | None:intergenic |
| GCAAACTGTTAGAATCTTGG+CGG | 0.561620 | 1.4:+72344120 | None:intergenic |
| TCACTTAAATTGTATTCATG+TGG | 0.563141 | 1.4:-72344526 | MS.gene09997:CDS |
| TAGGATACTTGTTCTCCTTG+CGG | 0.568084 | 1.4:+72344906 | None:intergenic |
| AACTGTTAGAATCTTGGCGG+CGG | 0.578443 | 1.4:+72344123 | None:intergenic |
| GATTTGGGAGATGAAGCACT+TGG | 0.579721 | 1.4:-72344349 | MS.gene09997:CDS |
| CCGAGTTGATAAACCTGCGT+TGG | 0.582629 | 1.4:+72344562 | None:intergenic |
| CTGACCTCAAATATAACTTG+TGG | 0.595453 | 1.4:+72343741 | None:intergenic |
| CTAAAAGTTGTGCACATCCA+CGG | 0.603973 | 1.4:+72343379 | None:intergenic |
| TAAATACTTCAAATATTCTG+GGG | 0.604843 | 1.4:-72344263 | MS.gene09997:CDS |
| CGCTCCGATTCATCTCCGGA+TGG | 0.616905 | 1.4:+72343891 | None:intergenic |
| TACCTTCCGAAGAAGCCGCA+AGG | 0.619142 | 1.4:-72344921 | MS.gene09997:CDS |
| GAGAAAACTTGTCGATGTCA+CGG | 0.625302 | 1.4:+72344737 | None:intergenic |
| TTCAAACCCTCAAACTTGTG+GGG | 0.628166 | 1.4:-72344707 | MS.gene09997:CDS |
| AAATGTAAGGGCCATAGAAG+AGG | 0.630077 | 1.4:-72344221 | MS.gene09997:CDS |
| TCTGGTATCAAAGAAAACAA+TGG | 0.640546 | 1.4:+72344973 | None:intergenic |
| GTTGTTCCAATTGCCAACGC+AGG | 0.640937 | 1.4:-72344575 | MS.gene09997:CDS |
| TGGCGGCGGAGAAATCATGA+AGG | 0.685071 | 1.4:+72344137 | None:intergenic |
| GAATCAGATTTCCATGAACG+TGG | 0.696307 | 1.4:-72344178 | MS.gene09997:CDS |
| GGTAAGGTCGAATTTCGCCG+TGG | 0.737861 | 1.4:-72343396 | MS.gene09997:CDS |
| CATCCGGAGATGAATCGGAG+CGG | 0.748262 | 1.4:-72343890 | MS.gene09997:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATACTTCAAATATTCT+GGG | - | chr1.4:72344059-72344078 | MS.gene09997:intron | 15.0% |
| !!! | TATTTGAAGTATTTAAGATT+TGG | + | chr1.4:72344055-72344074 | None:intergenic | 15.0% |
| !! | CTCTAAACATTGTTATAAAA+AGG | - | chr1.4:72344404-72344423 | MS.gene09997:CDS | 20.0% |
| !! | CTTAAATACTTCAAATATTC+TGG | - | chr1.4:72344058-72344077 | MS.gene09997:intron | 20.0% |
| !! | GTCATTGATATATAGTTATA+TGG | - | chr1.4:72344659-72344678 | MS.gene09997:CDS | 20.0% |
| !! | TAAATACTTCAAATATTCTG+GGG | - | chr1.4:72344060-72344079 | MS.gene09997:intron | 20.0% |
| !!! | AAAATTTGTTATCAACTTGT+AGG | - | chr1.4:72343903-72343922 | MS.gene09997:intron | 20.0% |
| !!! | CTTTTTATAACAATGTTTAG+AGG | + | chr1.4:72344406-72344425 | None:intergenic | 20.0% |
| ! | AAATTGTTATCTTCCCATTT+AGG | + | chr1.4:72343713-72343732 | None:intergenic | 25.0% |
| ! | ATATCTTTAACCAGTTGTTT+AGG | + | chr1.4:72343439-72343458 | None:intergenic | 25.0% |
| ! | ATGCTTGAAAAATACTTTGA+AGG | - | chr1.4:72344794-72344813 | MS.gene09997:CDS | 25.0% |
| ! | TAAACAACTGGTTAAAGATA+TGG | - | chr1.4:72343438-72343457 | MS.gene09997:CDS | 25.0% |
| ! | TAAATGGGAAGATAACAATT+TGG | - | chr1.4:72343712-72343731 | MS.gene09997:intron | 25.0% |
| ! | TACTTCAGATGTAAATGTAA+GGG | - | chr1.4:72344090-72344109 | MS.gene09997:intron | 25.0% |
| ! | TCACTTAAATTGTATTCATG+TGG | - | chr1.4:72343797-72343816 | MS.gene09997:CDS | 25.0% |
| ! | TTACTTCAGATGTAAATGTA+AGG | - | chr1.4:72344089-72344108 | MS.gene09997:intron | 25.0% |
| !! | AAGTAGACCTTAAGAAATTT+TGG | - | chr1.4:72344748-72344767 | MS.gene09997:CDS | 25.0% |
| !! | AATTTGGCAAACTTTGATTT+GGG | - | chr1.4:72343959-72343978 | MS.gene09997:intron | 25.0% |
| !!! | AAAGTATTTTTCAAGCATTG+AGG | + | chr1.4:72344792-72344811 | None:intergenic | 25.0% |
| !!! | AATTCAATTAAAAGAGTACC+TGG | + | chr1.4:72344240-72344259 | None:intergenic | 25.0% |
| AAGTCCACAAGTTATATTTG+AGG | - | chr1.4:72344578-72344597 | MS.gene09997:CDS | 30.0% | |
| AGTCATAAGTTCTTCATTTG+TGG | + | chr1.4:72344844-72344863 | None:intergenic | 30.0% | |
| ATTTCTTAAGGTCTACTTGA+TGG | + | chr1.4:72344746-72344765 | None:intergenic | 30.0% | |
| GAATTTGGCAAACTTTGATT+TGG | - | chr1.4:72343958-72343977 | MS.gene09997:intron | 30.0% | |
| GAGTTTGCCAAAATTTCTTA+AGG | + | chr1.4:72344758-72344777 | None:intergenic | 30.0% | |
| TATAAAAAGGTTGTTCCATC+CGG | - | chr1.4:72344417-72344436 | MS.gene09997:CDS | 30.0% | |
| TCTGGTATCAAAGAAAACAA+TGG | + | chr1.4:72343353-72343372 | None:intergenic | 30.0% | |
| TCTTGAGAATTGTTGGAATT+TGG | - | chr1.4:72343943-72343962 | MS.gene09997:intron | 30.0% | |
| TGATTTCTCTGATCCTAAAT+GGG | - | chr1.4:72343697-72343716 | MS.gene09997:intron | 30.0% | |
| TGCTTGTGTTTAGAAATTGT+AGG | - | chr1.4:72344297-72344316 | MS.gene09997:CDS | 30.0% | |
| TGTTTGCTCGTTTATATTAC+AGG | - | chr1.4:72344707-72344726 | MS.gene09997:CDS | 30.0% | |
| TTGATTTCTCTGATCCTAAA+TGG | - | chr1.4:72343696-72343715 | MS.gene09997:intron | 30.0% | |
| TTTCTTAAGGTCTACTTGAT+GGG | + | chr1.4:72344745-72344764 | None:intergenic | 30.0% | |
| ! | AGTTTTCATCGAAATTGATG+TGG | + | chr1.4:72343475-72343494 | None:intergenic | 30.0% |
| ! | ATTAAGTTGTCGAATGAAGA+TGG | - | chr1.4:72344906-72344925 | MS.gene09997:CDS | 30.0% |
| ! | CTTGAAAAATACTTTGAAGG+TGG | - | chr1.4:72344797-72344816 | MS.gene09997:CDS | 30.0% |
| ! | TCTTATGCAAGGAAAAGTTT+TGG | - | chr1.4:72344872-72344891 | MS.gene09997:CDS | 30.0% |
| ACTGCAAACTGTTAGAATCT+TGG | + | chr1.4:72344209-72344228 | None:intergenic | 35.0% | |
| ACTTGGATTAACAAGATTGG+TGG | - | chr1.4:72343991-72344010 | MS.gene09997:intron | 35.0% | |
| AGCACTTGGATTAACAAGAT+TGG | - | chr1.4:72343988-72344007 | MS.gene09997:intron | 35.0% | |
| AGTTTGCAGTTATTTACTCC+AGG | - | chr1.4:72344219-72344238 | MS.gene09997:CDS | 35.0% | |
| ATCAATGTCTACCTCTTCTA+TGG | + | chr1.4:72344116-72344135 | None:intergenic | 35.0% | |
| ATCGAAATTGATGTGGTCTT+CGG | + | chr1.4:72343468-72343487 | None:intergenic | 35.0% | |
| ATTGCTGGAAAAACTCACAT+TGG | - | chr1.4:72344551-72344570 | MS.gene09997:CDS | 35.0% | |
| ATTTCAAACCCTCAAACTTG+TGG | - | chr1.4:72343614-72343633 | MS.gene09997:intron | 35.0% | |
| CTGACCTCAAATATAACTTG+TGG | + | chr1.4:72344585-72344604 | None:intergenic | 35.0% | |
| GAACAAGTATCCTAAACAAC+TGG | - | chr1.4:72343426-72343445 | MS.gene09997:CDS | 35.0% | |
| GCACTCAAAGATTTGTCTTT+GGG | - | chr1.4:72343851-72343870 | MS.gene09997:CDS | 35.0% | |
| GTTTGAGTCTTGAGAATTGT+TGG | - | chr1.4:72343936-72343955 | MS.gene09997:intron | 35.0% | |
| TCAAAGATTTGTCTTTGGGT+TGG | - | chr1.4:72343855-72343874 | MS.gene09997:CDS | 35.0% | |
| TCAAATCCACAAAGCTCATA+GGG | + | chr1.4:72344510-72344529 | None:intergenic | 35.0% | |
| TGCACTCAAAGATTTGTCTT+TGG | - | chr1.4:72343850-72343869 | MS.gene09997:CDS | 35.0% | |
| TTCAAATCCACAAAGCTCAT+AGG | + | chr1.4:72344511-72344530 | None:intergenic | 35.0% | |
| TTCTTAAGGTCTACTTGATG+GGG | + | chr1.4:72344744-72344763 | None:intergenic | 35.0% | |
| TTGAAGGTGGTAGAAGTAAT+CGG | - | chr1.4:72344810-72344829 | MS.gene09997:CDS | 35.0% | |
| TTTCAAACCCTCAAACTTGT+GGG | - | chr1.4:72343615-72343634 | MS.gene09997:intron | 35.0% | |
| ! | AATGTGAGTTTTTCCAGCAA+TGG | + | chr1.4:72344552-72344571 | None:intergenic | 35.0% |
| ! | ATGTGAGTTTTTCCAGCAAT+GGG | + | chr1.4:72344551-72344570 | None:intergenic | 35.0% |
| !! | ACTTGTTGCTTTCTTATGCA+AGG | - | chr1.4:72344861-72344880 | MS.gene09997:CDS | 35.0% |
| AAATGTAAGGGCCATAGAAG+AGG | - | chr1.4:72344102-72344121 | MS.gene09997:intron | 40.0% | |
| ATTGCAAGACGAAGTGATTC+TGG | + | chr1.4:72343371-72343390 | None:intergenic | 40.0% | |
| ATTGTTTCCCCACAAGTTTG+AGG | + | chr1.4:72343626-72343645 | None:intergenic | 40.0% | |
| CGCAAATTCTTTGAACGCTT+TGG | + | chr1.4:72344978-72344997 | None:intergenic | 40.0% | |
| CTAAAAGTTGTGCACATCCA+CGG | + | chr1.4:72344947-72344966 | None:intergenic | 40.0% | |
| GAATCAGATTTCCATGAACG+TGG | - | chr1.4:72344145-72344164 | MS.gene09997:CDS | 40.0% | |
| GAGAAAACTTGTCGATGTCA+CGG | + | chr1.4:72343589-72343608 | None:intergenic | 40.0% | |
| GCAAACTGTTAGAATCTTGG+CGG | + | chr1.4:72344206-72344225 | None:intergenic | 40.0% | |
| GTTGTCGAATGAAGATGGTA+AGG | - | chr1.4:72344911-72344930 | MS.gene09997:CDS | 40.0% | |
| TAGGATACTTGTTCTCCTTG+CGG | + | chr1.4:72343420-72343439 | None:intergenic | 40.0% | |
| TTCAAACCCTCAAACTTGTG+GGG | - | chr1.4:72343616-72343635 | MS.gene09997:intron | 40.0% | |
| TTGTTTCCCCACAAGTTTGA+GGG | + | chr1.4:72343625-72343644 | None:intergenic | 40.0% | |
| !! | TCATCGACTTCATCACAAAC+TGG | - | chr1.4:72343546-72343565 | MS.gene09997:CDS | 40.0% |
| AACTGTTAGAATCTTGGCGG+CGG | + | chr1.4:72344203-72344222 | None:intergenic | 45.0% | |
| AGAGTTCATTGCCACGTTCA+TGG | + | chr1.4:72344159-72344178 | None:intergenic | 45.0% | |
| ATGCATCCCTATGAGCTTTG+TGG | - | chr1.4:72344501-72344520 | MS.gene09997:CDS | 45.0% | |
| CCAACGCAGGTTTATCAACT+CGG | - | chr1.4:72343761-72343780 | MS.gene09997:CDS | 45.0% | |
| TGTTCCATCCGGAGATGAAT+CGG | - | chr1.4:72344428-72344447 | MS.gene09997:CDS | 45.0% | |
| ! | GATAAACCTGCGTTGGCAAT+TGG | + | chr1.4:72343757-72343776 | None:intergenic | 45.0% |
| ! | GATTTGGGAGATGAAGCACT+TGG | - | chr1.4:72343974-72343993 | MS.gene09997:intron | 45.0% |
| !!! | GTTGCTTTTGCGACACAACA+GGG | - | chr1.4:72343656-72343675 | MS.gene09997:intron | 45.0% |
| !!! | TGTTGCTTTTGCGACACAAC+AGG | - | chr1.4:72343655-72343674 | MS.gene09997:intron | 45.0% |
| GTTGTTCCAATTGCCAACGC+AGG | - | chr1.4:72343748-72343767 | MS.gene09997:CDS | 50.0% | |
| TGTTCTCCTTGCGGCTTCTT+CGG | + | chr1.4:72343411-72343430 | None:intergenic | 50.0% | |
| !! | CCGAGTTGATAAACCTGCGT+TGG | + | chr1.4:72343764-72343783 | None:intergenic | 50.0% |
| CATCCGCTCCGATTCATCTC+CGG | + | chr1.4:72344439-72344458 | None:intergenic | 55.0% | |
| CATCCGGAGATGAATCGGAG+CGG | - | chr1.4:72344433-72344452 | MS.gene09997:CDS | 55.0% | |
| GCTCAAAAGCTGCCCATTGC+TGG | - | chr1.4:72344536-72344555 | MS.gene09997:CDS | 55.0% | |
| GGTAAGGTCGAATTTCGCCG+TGG | - | chr1.4:72344927-72344946 | MS.gene09997:CDS | 55.0% | |
| TACCTTCCGAAGAAGCCGCA+AGG | - | chr1.4:72343402-72343421 | MS.gene09997:CDS | 55.0% | |
| TGGCGGCGGAGAAATCATGA+AGG | + | chr1.4:72344189-72344208 | None:intergenic | 55.0% | |
| TTGCGGCTTCTTCGGAAGGT+AGG | + | chr1.4:72343403-72343422 | None:intergenic | 55.0% | |
| CGCTCCGATTCATCTCCGGA+TGG | + | chr1.4:72344435-72344454 | None:intergenic | 60.0% | |
| CTCCTTGCGGCTTCTTCGGA+AGG | + | chr1.4:72343407-72343426 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 72343332 | 72345013 | 72343332 | ID=MS.gene09997 |
| chr1.4 | mRNA | 72343332 | 72345013 | 72343332 | ID=MS.gene09997.t1;Parent=MS.gene09997 |
| chr1.4 | exon | 72344105 | 72345013 | 72344105 | ID=MS.gene09997.t1.exon1;Parent=MS.gene09997.t1 |
| chr1.4 | CDS | 72344105 | 72345013 | 72344105 | ID=cds.MS.gene09997.t1;Parent=MS.gene09997.t1 |
| chr1.4 | exon | 72343746 | 72343919 | 72343746 | ID=MS.gene09997.t1.exon2;Parent=MS.gene09997.t1 |
| chr1.4 | CDS | 72343746 | 72343919 | 72343746 | ID=cds.MS.gene09997.t1;Parent=MS.gene09997.t1 |
| chr1.4 | exon | 72343332 | 72343616 | 72343332 | ID=MS.gene09997.t1.exon3;Parent=MS.gene09997.t1 |
| chr1.4 | CDS | 72343332 | 72343616 | 72343332 | ID=cds.MS.gene09997.t1;Parent=MS.gene09997.t1 |
| Gene Sequence |
| Protein sequence |