Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97999.t1 | XP_003595473.1 | 91.9 | 457 | 36 | 1 | 1 | 457 | 1 | 456 | 5.50E-244 | 853.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97999.t1 | Q9C7X8 | 32.1 | 418 | 261 | 10 | 10 | 413 | 16 | 424 | 3.8e-52 | 207.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97999.t1 | G7ISV8 | 91.9 | 457 | 36 | 1 | 1 | 457 | 1 | 456 | 4.0e-244 | 853.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97999.t1 | MTR_2g048140 | 91.904 | 457 | 36 | 1 | 1 | 457 | 1 | 456 | 0.0 | 859 |
MS.gene97999.t1 | MTR_1g090907 | 81.182 | 457 | 84 | 2 | 1 | 457 | 1 | 455 | 0.0 | 744 |
MS.gene97999.t1 | MTR_1g090903 | 59.524 | 462 | 131 | 6 | 1 | 457 | 1 | 411 | 5.32e-176 | 499 |
MS.gene97999.t1 | MTR_3g448340 | 37.149 | 463 | 270 | 11 | 5 | 454 | 4 | 458 | 2.92e-83 | 264 |
MS.gene97999.t1 | MTR_5g080150 | 34.975 | 406 | 224 | 7 | 5 | 404 | 3 | 374 | 3.62e-67 | 220 |
MS.gene97999.t1 | MTR_3g049530 | 30.146 | 481 | 237 | 14 | 5 | 455 | 4 | 415 | 9.95e-47 | 167 |
MS.gene97999.t1 | MTR_1g071060 | 73.333 | 90 | 24 | 0 | 40 | 129 | 7 | 96 | 2.31e-38 | 135 |
MS.gene97999.t1 | MTR_7g029260 | 37.931 | 116 | 71 | 1 | 314 | 428 | 44 | 159 | 2.03e-17 | 81.6 |
MS.gene97999.t1 | MTR_2g047858 | 24.069 | 349 | 212 | 15 | 20 | 353 | 128 | 438 | 1.46e-14 | 76.3 |
MS.gene97999.t1 | MTR_8g468810 | 23.950 | 476 | 304 | 18 | 5 | 457 | 23 | 463 | 1.70e-13 | 72.8 |
MS.gene97999.t1 | MTR_1g016310 | 25.316 | 316 | 178 | 14 | 20 | 318 | 33 | 307 | 1.76e-12 | 68.6 |
MS.gene97999.t1 | MTR_8g468470 | 21.569 | 408 | 276 | 16 | 30 | 414 | 36 | 422 | 2.29e-12 | 69.3 |
MS.gene97999.t1 | MTR_2g072530 | 26.446 | 121 | 84 | 2 | 7 | 127 | 13 | 128 | 2.74e-12 | 68.9 |
MS.gene97999.t1 | MTR_1g016310 | 25.397 | 315 | 177 | 14 | 20 | 317 | 33 | 306 | 3.23e-12 | 68.6 |
MS.gene97999.t1 | MTR_8g468810 | 25.341 | 367 | 234 | 14 | 5 | 353 | 23 | 367 | 8.48e-12 | 67.0 |
MS.gene97999.t1 | MTR_6g018660 | 24.722 | 360 | 215 | 14 | 16 | 346 | 29 | 361 | 1.14e-11 | 66.6 |
MS.gene97999.t1 | MTR_8g062270 | 23.555 | 467 | 304 | 18 | 4 | 444 | 13 | 452 | 4.03e-11 | 65.1 |
MS.gene97999.t1 | MTR_8g468810 | 26.101 | 318 | 196 | 12 | 5 | 301 | 23 | 322 | 6.50e-11 | 63.9 |
MS.gene97999.t1 | MTR_0049s0110 | 28.745 | 247 | 132 | 11 | 7 | 251 | 8 | 212 | 8.83e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97999.t1 | AT1G56400 | 32.203 | 413 | 257 | 10 | 16 | 414 | 22 | 425 | 1.70e-59 | 202 |
MS.gene97999.t1 | AT5G54820 | 29.979 | 467 | 295 | 13 | 9 | 454 | 9 | 464 | 2.58e-57 | 196 |
MS.gene97999.t1 | AT3G29830 | 32.196 | 469 | 273 | 18 | 10 | 454 | 11 | 458 | 8.82e-56 | 192 |
MS.gene97999.t1 | AT3G29830 | 31.557 | 469 | 277 | 17 | 10 | 454 | 11 | 459 | 4.68e-54 | 187 |
MS.gene97999.t1 | AT3G62230 | 29.040 | 427 | 285 | 13 | 6 | 422 | 7 | 425 | 1.61e-49 | 175 |
MS.gene97999.t1 | AT1G56400 | 32.378 | 349 | 213 | 9 | 80 | 414 | 45 | 384 | 2.56e-47 | 169 |
MS.gene97999.t1 | AT2G17305 | 30.723 | 166 | 107 | 4 | 296 | 456 | 106 | 268 | 2.95e-20 | 90.9 |
MS.gene97999.t1 | AT1G61330 | 27.078 | 373 | 233 | 13 | 6 | 361 | 9 | 359 | 4.44e-19 | 89.7 |
MS.gene97999.t1 | AT5G56410 | 31.174 | 247 | 146 | 9 | 16 | 248 | 12 | 248 | 2.04e-15 | 79.0 |
MS.gene97999.t1 | AT3G28410 | 24.198 | 405 | 247 | 18 | 4 | 392 | 25 | 385 | 4.94e-13 | 71.2 |
MS.gene97999.t1 | AT3G50710 | 23.950 | 476 | 289 | 20 | 6 | 457 | 1 | 427 | 5.68e-12 | 67.8 |
MS.gene97999.t1 | AT3G59200 | 24.352 | 386 | 237 | 15 | 1 | 355 | 4 | 365 | 3.62e-11 | 65.1 |
MS.gene97999.t1 | AT3G59200 | 25.000 | 404 | 208 | 19 | 1 | 353 | 4 | 363 | 8.26e-11 | 64.3 |
Find 70 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAATCGTTATCTTCCCATTT+TGG | 0.155222 | 2.3:+42953766 | None:intergenic |
CTTAAATACTTCAAATATTC+TGG | 0.168651 | 2.3:-42953418 | MS.gene97999:CDS |
TTGATTTCTCTGATCCAAAA+TGG | 0.187141 | 2.3:-42953780 | MS.gene97999:CDS |
TTGAAGGTGGTAGAAGTAAT+TGG | 0.266648 | 2.3:-42952638 | MS.gene97999:CDS |
TTTCTTAAGGTCTACATCAT+AGG | 0.276079 | 2.3:+42952706 | None:intergenic |
TCTTGAGAAGTGTTGGAATT+TGG | 0.285867 | 2.3:-42953533 | MS.gene97999:CDS |
GAATTTGGCGAACTTTGATT+TGG | 0.291195 | 2.3:-42953518 | MS.gene97999:CDS |
TGCACTCAAAGACTTATCTT+TGG | 0.307976 | 2.3:-42953626 | MS.gene97999:CDS |
TTACTTCAGATATAAATGTT+AGG | 0.319721 | 2.3:-42953387 | MS.gene97999:CDS |
TCCCTAGCCGCGGCATTAAC+AGG | 0.323207 | 2.3:-42953897 | MS.gene97999:CDS |
CGGAGAAATCATGAAGGATT+TGG | 0.330294 | 2.3:+42953296 | None:intergenic |
TATTTGAAGTATTTAAGATT+TGG | 0.333013 | 2.3:+42953424 | None:intergenic |
CGTTTGCAGTTATCTACTTC+AGG | 0.345166 | 2.3:-42953257 | MS.gene97999:intron |
CTTCAATGAAAACTTCTTTG+TGG | 0.359992 | 2.3:-42953995 | MS.gene97999:CDS |
GAGTTTGCCAATATTTCTTA+AGG | 0.366672 | 2.3:+42952693 | None:intergenic |
ATGCATTCATATGAACTTTG+TGG | 0.375385 | 2.3:-42952915 | MS.gene97999:CDS |
TGTTGCTTTCGCGATACAAC+GGG | 0.386792 | 2.3:-42953821 | MS.gene97999:CDS |
TGTTCTTGTTGTGGCTTCTT+CGG | 0.387969 | 2.3:+42954071 | None:intergenic |
AGTCATAAGTTCTTCGTTTG+TGG | 0.396856 | 2.3:+42952607 | None:intergenic |
ATGTAGACCTTAAGAAATAT+TGG | 0.398156 | 2.3:-42952700 | MS.gene97999:CDS |
GCACCAAAGTTGAGAAAATC+TGG | 0.412606 | 2.3:+42953646 | None:intergenic |
ATATATTAGGTCGTTCCATC+TGG | 0.419959 | 2.3:-42952999 | MS.gene97999:intron |
GCACTCAAAGACTTATCTTT+GGG | 0.421361 | 2.3:-42953625 | MS.gene97999:CDS |
ACTGCAAACGGTTAGAATCT+TGG | 0.425579 | 2.3:+42953270 | None:intergenic |
AATTTGGCGAACTTTGATTT+GGG | 0.426916 | 2.3:-42953517 | MS.gene97999:CDS |
TACTTCAGATATAAATGTTA+GGG | 0.428980 | 2.3:-42953386 | MS.gene97999:CDS |
CAAACTTTCAATTGTTCGAC+AGG | 0.439570 | 2.3:+42953558 | None:intergenic |
GTTTGAGTCTTGAGAAGTGT+TGG | 0.441647 | 2.3:-42953540 | MS.gene97999:CDS |
TTCTTAAGGTCTACATCATA+GGG | 0.458742 | 2.3:+42952707 | None:intergenic |
CGTTCCATCTGGAGATGAAC+CGG | 0.463128 | 2.3:-42952988 | MS.gene97999:CDS |
TTGAATCGCTAAAACTGTAT+TGG | 0.463419 | 2.3:-42953684 | MS.gene97999:CDS |
TGATTTCTCTGATCCAAAAT+GGG | 0.463607 | 2.3:-42953779 | MS.gene97999:CDS |
ACCACTTGGATTAACAAGAT+TGG | 0.469749 | 2.3:-42953488 | MS.gene97999:CDS |
ACCTGTTAATGCCGCGGCTA+GGG | 0.471379 | 2.3:+42953896 | None:intergenic |
TTGTTTCCCCACAAGTTTGA+GGG | 0.476639 | 2.3:+42953854 | None:intergenic |
CCAACGCATGTTTATCAACT+CGG | 0.480761 | 2.3:-42953715 | MS.gene97999:CDS |
CTTGTTGTGGCTTCTTCGGA+GGG | 0.484040 | 2.3:+42954075 | None:intergenic |
TCATCAACTTTATTACAACT+TGG | 0.486279 | 2.3:-42953930 | MS.gene97999:CDS |
GAAATGATTGCAAGAAGAAG+TGG | 0.494008 | 2.3:+42954105 | None:intergenic |
TTCCATGTTATCTCTTGCCA+TGG | 0.494876 | 2.3:+42954149 | None:intergenic |
AAGTCCACAAGTTATATTTG+AGG | 0.508872 | 2.3:-42952838 | MS.gene97999:intron |
ACTTGTTGCTTTCTTATGCA+AGG | 0.514283 | 2.3:-42952587 | MS.gene97999:CDS |
AAGGATAGATGTTCTTGTTG+TGG | 0.519897 | 2.3:+42954062 | None:intergenic |
TCTTGTTGTGGCTTCTTCGG+AGG | 0.529075 | 2.3:+42954074 | None:intergenic |
TTGTGGCTTCTTCGGAGGGT+AGG | 0.530760 | 2.3:+42954079 | None:intergenic |
AAAGCACTTTGCATCTTCAC+CGG | 0.532263 | 2.3:+42952969 | None:intergenic |
CTGAAGTAGATAACTGCAAA+CGG | 0.540402 | 2.3:+42953258 | None:intergenic |
ATTGTTTCCCCACAAGTTTG+AGG | 0.540471 | 2.3:+42953853 | None:intergenic |
AACAGATTAATATTAAGTTG+TGG | 0.543730 | 2.3:-42952553 | MS.gene97999:CDS |
AACCTGTTAATGCCGCGGCT+AGG | 0.547285 | 2.3:+42953895 | None:intergenic |
GTGTTGCTTTCGCGATACAA+CGG | 0.552369 | 2.3:-42953822 | MS.gene97999:CDS |
TCAAAGACTTATCTTTGGGT+CGG | 0.555960 | 2.3:-42953621 | MS.gene97999:CDS |
ACTTGGATTAACAAGATTGG+TGG | 0.562210 | 2.3:-42953485 | MS.gene97999:CDS |
AACCATGGCAAGAGATAACA+TGG | 0.562222 | 2.3:-42954151 | None:intergenic |
ACCAATCTTGTTAATCCAAG+TGG | 0.566249 | 2.3:+42953487 | None:intergenic |
AAATGTTAGGGCTATAGAAG+AGG | 0.577818 | 2.3:-42953374 | MS.gene97999:CDS |
CCGAGTTGATAAACATGCGT+TGG | 0.591872 | 2.3:+42953715 | None:intergenic |
CTGACCTCAAATATAACTTG+TGG | 0.595453 | 2.3:+42952834 | None:intergenic |
AACGGTTAGAATCTTGGCGG+CGG | 0.607837 | 2.3:+42953276 | None:intergenic |
TTTGAACCCTCAAACTTGTG+GGG | 0.613300 | 2.3:-42953860 | MS.gene97999:CDS |
GATTTGGGAGATGAACCACT+TGG | 0.617804 | 2.3:-42953502 | MS.gene97999:CDS |
GCAAACGGTTAGAATCTTGG+CGG | 0.622750 | 2.3:+42953273 | None:intergenic |
ATCACACACTTCCCTAGCCG+CGG | 0.654787 | 2.3:-42953907 | MS.gene97999:CDS |
TTCACCGGTTCATCTCCAGA+TGG | 0.661858 | 2.3:+42952984 | None:intergenic |
GAGAAAACCTGTTAATGCCG+CGG | 0.665328 | 2.3:+42953890 | None:intergenic |
TCGCTAAAACTGTATTGGTG+TGG | 0.670269 | 2.3:-42953679 | MS.gene97999:CDS |
TGGCGGCGGAGAAATCATGA+AGG | 0.685071 | 2.3:+42953290 | None:intergenic |
GAATCAGAATTCAATGAACG+TGG | 0.690987 | 2.3:-42953331 | MS.gene97999:CDS |
GTTGCTTTCGCGATACAACG+GGG | 0.735844 | 2.3:-42953820 | MS.gene97999:CDS |
GATAAAGAAGAATTTCGACG+TGG | 0.771620 | 2.3:-42952518 | MS.gene97999:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATCAACATACATATATT+AGG | - | chr2.3:42953589-42953608 | MS.gene97999:CDS | 15.0% |
!! | TTCTTGTTAATGATTAAATA+TGG | - | chr2.3:42953383-42953402 | MS.gene97999:CDS | 15.0% |
!!! | TATTTGAAGTATTTAAGATT+TGG | + | chr2.3:42953180-42953199 | None:intergenic | 15.0% |
!! | CTTAAATACTTCAAATATTC+TGG | - | chr2.3:42953183-42953202 | MS.gene97999:intron | 20.0% |
!! | TACTTCAGATATAAATGTTA+GGG | - | chr2.3:42953215-42953234 | MS.gene97999:intron | 20.0% |
!! | TAGTCATTGATATAGTTATA+TGG | - | chr2.3:42953831-42953850 | MS.gene97999:CDS | 20.0% |
!! | TATTTGCTTGTATATATTAC+AGG | - | chr2.3:42953860-42953879 | MS.gene97999:CDS | 20.0% |
!! | TTACTTCAGATATAAATGTT+AGG | - | chr2.3:42953214-42953233 | MS.gene97999:intron | 20.0% |
!!! | AACAGATTAATATTAAGTTG+TGG | - | chr2.3:42954048-42954067 | MS.gene97999:CDS | 20.0% |
! | ATGCTTGAAAAATACATTGA+AGG | - | chr2.3:42953947-42953966 | MS.gene97999:CDS | 25.0% |
! | ATGGTACTAGTATATTTAGT+TGG | - | chr2.3:42953402-42953421 | MS.gene97999:CDS | 25.0% |
! | ATGTAGACCTTAAGAAATAT+TGG | - | chr2.3:42953901-42953920 | MS.gene97999:CDS | 25.0% |
! | TAAAACTGTAGCAAAATTGT+TGG | - | chr2.3:42953525-42953544 | MS.gene97999:CDS | 25.0% |
! | TCATCAACTTTATTACAACT+TGG | - | chr2.3:42952671-42952690 | MS.gene97999:CDS | 25.0% |
!!! | AATGTATTTTTCAAGCATTG+AGG | + | chr2.3:42953945-42953964 | None:intergenic | 25.0% |
!!! | CCATATCTTTAACCATTTTT+CGG | + | chr2.3:42952566-42952585 | None:intergenic | 25.0% |
AAGTCCACAAGTTATATTTG+AGG | - | chr2.3:42953763-42953782 | MS.gene97999:CDS | 30.0% | |
ATGCATTCATATGAACTTTG+TGG | - | chr2.3:42953686-42953705 | MS.gene97999:CDS | 30.0% | |
CCGAAAAATGGTTAAAGATA+TGG | - | chr2.3:42952563-42952582 | MS.gene97999:CDS | 30.0% | |
CTTCAATGAAAACTTCTTTG+TGG | - | chr2.3:42952606-42952625 | MS.gene97999:CDS | 30.0% | |
CTTGAAAAATACATTGAAGG+TGG | - | chr2.3:42953950-42953969 | MS.gene97999:CDS | 30.0% | |
GAGTTTGCCAATATTTCTTA+AGG | + | chr2.3:42953911-42953930 | None:intergenic | 30.0% | |
TGATTTCTCTGATCCAAAAT+GGG | - | chr2.3:42952822-42952841 | MS.gene97999:intron | 30.0% | |
TTCTTAAGGTCTACATCATA+GGG | + | chr2.3:42953897-42953916 | None:intergenic | 30.0% | |
TTGAATCGCTAAAACTGTAT+TGG | - | chr2.3:42952917-42952936 | MS.gene97999:CDS | 30.0% | |
TTGATTTCTCTGATCCAAAA+TGG | - | chr2.3:42952821-42952840 | MS.gene97999:intron | 30.0% | |
TTTCTTAAGGTCTACATCAT+AGG | + | chr2.3:42953898-42953917 | None:intergenic | 30.0% | |
! | AAATCGTTATCTTCCCATTT+TGG | + | chr2.3:42952838-42952857 | None:intergenic | 30.0% |
! | AATTTGGCGAACTTTGATTT+GGG | - | chr2.3:42953084-42953103 | MS.gene97999:intron | 30.0% |
! | ACTTTTAGTCAAAGCTCAAA+AGG | - | chr2.3:42954115-42954134 | MS.gene97999:CDS | 30.0% |
! | ATTGAAGTCGATGTTTTCTT+CGG | + | chr2.3:42952593-42952612 | None:intergenic | 30.0% |
! | CTTTTAGTCAAAGCTCAAAA+GGG | - | chr2.3:42954116-42954135 | MS.gene97999:CDS | 30.0% |
!! | TCTTTAACCATTTTTCGGTA+AGG | + | chr2.3:42952561-42952580 | None:intergenic | 30.0% |
!!! | AATGTGAGTTTTTCAAGCAA+TGG | + | chr2.3:42953737-42953756 | None:intergenic | 30.0% |
!!! | ATGTGAGTTTTTCAAGCAAT+GGG | + | chr2.3:42953736-42953755 | None:intergenic | 30.0% |
AAATGTTAGGGCTATAGAAG+AGG | - | chr2.3:42953227-42953246 | MS.gene97999:intron | 35.0% | |
AAGGATAGATGTTCTTGTTG+TGG | + | chr2.3:42952542-42952561 | None:intergenic | 35.0% | |
ACCAATCTTGTTAATCCAAG+TGG | + | chr2.3:42953117-42953136 | None:intergenic | 35.0% | |
ACCACTTGGATTAACAAGAT+TGG | - | chr2.3:42953113-42953132 | MS.gene97999:intron | 35.0% | |
ACTTGGATTAACAAGATTGG+TGG | - | chr2.3:42953116-42953135 | MS.gene97999:intron | 35.0% | |
AGTCATAAGTTCTTCGTTTG+TGG | + | chr2.3:42953997-42954016 | None:intergenic | 35.0% | |
ATATATTAGGTCGTTCCATC+TGG | - | chr2.3:42953602-42953621 | MS.gene97999:CDS | 35.0% | |
CAAACTTTCAATTGTTCGAC+AGG | + | chr2.3:42953046-42953065 | None:intergenic | 35.0% | |
CATCTATCCTTACCGAAAAA+TGG | - | chr2.3:42952551-42952570 | MS.gene97999:CDS | 35.0% | |
CTGAAGTAGATAACTGCAAA+CGG | + | chr2.3:42953346-42953365 | None:intergenic | 35.0% | |
CTGACCTCAAATATAACTTG+TGG | + | chr2.3:42953770-42953789 | None:intergenic | 35.0% | |
GAAATGATTGCAAGAAGAAG+TGG | + | chr2.3:42952499-42952518 | None:intergenic | 35.0% | |
GAATCAGAATTCAATGAACG+TGG | - | chr2.3:42953270-42953289 | MS.gene97999:CDS | 35.0% | |
GAATTTGGCGAACTTTGATT+TGG | - | chr2.3:42953083-42953102 | MS.gene97999:intron | 35.0% | |
GATAAAGAAGAATTTCGACG+TGG | - | chr2.3:42954083-42954102 | MS.gene97999:CDS | 35.0% | |
GCACTCAAAGACTTATCTTT+GGG | - | chr2.3:42952976-42952995 | MS.gene97999:CDS | 35.0% | |
TCAAAGACTTATCTTTGGGT+CGG | - | chr2.3:42952980-42952999 | MS.gene97999:CDS | 35.0% | |
TGCACTCAAAGACTTATCTT+TGG | - | chr2.3:42952975-42952994 | MS.gene97999:CDS | 35.0% | |
TTGAAGGTGGTAGAAGTAAT+TGG | - | chr2.3:42953963-42953982 | MS.gene97999:CDS | 35.0% | |
! | CATTAACAGGTTTTCTCTCA+CGG | - | chr2.3:42952717-42952736 | MS.gene97999:CDS | 35.0% |
! | TGGGAAGATAACGATTTTGA+TGG | - | chr2.3:42952841-42952860 | MS.gene97999:CDS | 35.0% |
! | TTTTGAACCCTCAAACTTGT+GGG | - | chr2.3:42952740-42952759 | MS.gene97999:intron | 35.0% |
!! | ACTTGTTGCTTTCTTATGCA+AGG | - | chr2.3:42954014-42954033 | MS.gene97999:CDS | 35.0% |
!! | TCTTGAGAAGTGTTGGAATT+TGG | - | chr2.3:42953068-42953087 | MS.gene97999:intron | 35.0% |
ACTGCAAACGGTTAGAATCT+TGG | + | chr2.3:42953334-42953353 | None:intergenic | 40.0% | |
ATTGTTTCCCCACAAGTTTG+AGG | + | chr2.3:42952751-42952770 | None:intergenic | 40.0% | |
CCAACGCATGTTTATCAACT+CGG | - | chr2.3:42952886-42952905 | MS.gene97999:CDS | 40.0% | |
CGGAGAAATCATGAAGGATT+TGG | + | chr2.3:42953308-42953327 | None:intergenic | 40.0% | |
CGTTTGCAGTTATCTACTTC+AGG | - | chr2.3:42953344-42953363 | MS.gene97999:CDS | 40.0% | |
GCACCAAAGTTGAGAAAATC+TGG | + | chr2.3:42952958-42952977 | None:intergenic | 40.0% | |
TTGTTTCCCCACAAGTTTGA+GGG | + | chr2.3:42952750-42952769 | None:intergenic | 40.0% | |
TTTGAACCCTCAAACTTGTG+GGG | - | chr2.3:42952741-42952760 | MS.gene97999:intron | 40.0% | |
! | AAAGCACTTTGCATCTTCAC+CGG | + | chr2.3:42953635-42953654 | None:intergenic | 40.0% |
! | ACGCCAGATTTTCTCAACTT+TGG | - | chr2.3:42952952-42952971 | MS.gene97999:CDS | 40.0% |
! | GTTTGAGTCTTGAGAAGTGT+TGG | - | chr2.3:42953061-42953080 | MS.gene97999:intron | 40.0% |
! | TCGCTAAAACTGTATTGGTG+TGG | - | chr2.3:42952922-42952941 | MS.gene97999:CDS | 40.0% |
! | TGTTCTTGTTGTGGCTTCTT+CGG | + | chr2.3:42952533-42952552 | None:intergenic | 40.0% |
!! | GTTTTGAACCCTCAAACTTG+TGG | - | chr2.3:42952739-42952758 | MS.gene97999:intron | 40.0% |
GAGAAAACCTGTTAATGCCG+CGG | + | chr2.3:42952714-42952733 | None:intergenic | 45.0% | |
GATTTGGGAGATGAACCACT+TGG | - | chr2.3:42953099-42953118 | MS.gene97999:intron | 45.0% | |
GCAAACGGTTAGAATCTTGG+CGG | + | chr2.3:42953331-42953350 | None:intergenic | 45.0% | |
!! | CCGAGTTGATAAACATGCGT+TGG | + | chr2.3:42952889-42952908 | None:intergenic | 45.0% |
!! | GTGTTGCTTTCGCGATACAA+CGG | - | chr2.3:42952779-42952798 | MS.gene97999:intron | 45.0% |
!! | TGTTGCTTTCGCGATACAAC+GGG | - | chr2.3:42952780-42952799 | MS.gene97999:intron | 45.0% |
AACGGTTAGAATCTTGGCGG+CGG | + | chr2.3:42953328-42953347 | None:intergenic | 50.0% | |
CGTTCCATCTGGAGATGAAC+CGG | - | chr2.3:42953613-42953632 | MS.gene97999:CDS | 50.0% | |
! | CTTGTTGTGGCTTCTTCGGA+GGG | + | chr2.3:42952529-42952548 | None:intergenic | 50.0% |
! | GTTGCTTTCGCGATACAACG+GGG | - | chr2.3:42952781-42952800 | MS.gene97999:intron | 50.0% |
! | TCTTGTTGTGGCTTCTTCGG+AGG | + | chr2.3:42952530-42952549 | None:intergenic | 50.0% |
!! | TTCACCGGTTCATCTCCAGA+TGG | + | chr2.3:42953620-42953639 | None:intergenic | 50.0% |
AACCTGTTAATGCCGCGGCT+AGG | + | chr2.3:42952709-42952728 | None:intergenic | 55.0% | |
ACCTGTTAATGCCGCGGCTA+GGG | + | chr2.3:42952708-42952727 | None:intergenic | 55.0% | |
ATCACACACTTCCCTAGCCG+CGG | - | chr2.3:42952694-42952713 | MS.gene97999:CDS | 55.0% | |
TGGCGGCGGAGAAATCATGA+AGG | + | chr2.3:42953314-42953333 | None:intergenic | 55.0% | |
TTGTGGCTTCTTCGGAGGGT+AGG | + | chr2.3:42952525-42952544 | None:intergenic | 55.0% | |
TCCCTAGCCGCGGCATTAAC+AGG | - | chr2.3:42952704-42952723 | MS.gene97999:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 42952454 | 42954169 | 42952454 | ID=MS.gene97999 |
chr2.3 | mRNA | 42952454 | 42954169 | 42952454 | ID=MS.gene97999.t1;Parent=MS.gene97999 |
chr2.3 | exon | 42953258 | 42954169 | 42953258 | ID=MS.gene97999.t1.exon1;Parent=MS.gene97999.t1 |
chr2.3 | CDS | 42953258 | 42954169 | 42953258 | ID=cds.MS.gene97999.t1;Parent=MS.gene97999.t1 |
chr2.3 | exon | 42952839 | 42953012 | 42952839 | ID=MS.gene97999.t1.exon2;Parent=MS.gene97999.t1 |
chr2.3 | CDS | 42952839 | 42953012 | 42952839 | ID=cds.MS.gene97999.t1;Parent=MS.gene97999.t1 |
chr2.3 | exon | 42952454 | 42952741 | 42952454 | ID=MS.gene97999.t1.exon3;Parent=MS.gene97999.t1 |
chr2.3 | CDS | 42952454 | 42952741 | 42952454 | ID=cds.MS.gene97999.t1;Parent=MS.gene97999.t1 |
Gene Sequence |
Protein sequence |