Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50153.t1 | AES99385.1 | 80.6 | 408 | 48 | 1 | 4 | 411 | 3 | 379 | 8.50E-184 | 653.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50153.t1 | Q9C7X8 | 33.0 | 424 | 262 | 11 | 6 | 417 | 13 | 426 | 1.2e-56 | 222.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50153.t1 | G7KBT2 | 80.6 | 408 | 48 | 1 | 4 | 411 | 3 | 379 | 6.2e-184 | 653.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50153.t1 | MTR_5g080150 | 80.535 | 411 | 48 | 2 | 1 | 411 | 1 | 379 | 0.0 | 654 |
| MS.gene50153.t1 | MTR_2g048140 | 39.440 | 464 | 265 | 9 | 4 | 464 | 5 | 455 | 1.56e-97 | 301 |
| MS.gene50153.t1 | MTR_1g090907 | 38.147 | 464 | 270 | 10 | 4 | 464 | 5 | 454 | 1.85e-92 | 288 |
| MS.gene50153.t1 | MTR_3g448340 | 38.174 | 482 | 256 | 11 | 1 | 463 | 1 | 459 | 6.46e-91 | 284 |
| MS.gene50153.t1 | MTR_1g090903 | 32.805 | 442 | 228 | 11 | 31 | 464 | 30 | 410 | 3.13e-68 | 224 |
| MS.gene50153.t1 | MTR_5g080160 | 86.408 | 103 | 14 | 0 | 363 | 465 | 58 | 160 | 4.76e-55 | 181 |
| MS.gene50153.t1 | MTR_5g080160 | 84.211 | 57 | 8 | 1 | 1 | 56 | 1 | 57 | 1.04e-22 | 94.7 |
| MS.gene50153.t1 | MTR_3g049530 | 28.571 | 490 | 246 | 12 | 1 | 462 | 1 | 414 | 2.50e-46 | 166 |
| MS.gene50153.t1 | MTR_7g029260 | 55.556 | 126 | 55 | 1 | 309 | 433 | 36 | 161 | 1.40e-40 | 145 |
| MS.gene50153.t1 | MTR_5g080110 | 80.597 | 67 | 13 | 0 | 1 | 67 | 1 | 67 | 9.25e-31 | 113 |
| MS.gene50153.t1 | MTR_5g080090 | 72.727 | 77 | 11 | 2 | 335 | 410 | 39 | 106 | 5.91e-27 | 105 |
| MS.gene50153.t1 | MTR_5g066900 | 60.976 | 82 | 17 | 1 | 19 | 100 | 19 | 85 | 1.04e-24 | 97.8 |
| MS.gene50153.t1 | MTR_5g066890 | 53.409 | 88 | 39 | 1 | 321 | 408 | 1 | 86 | 2.59e-23 | 94.0 |
| MS.gene50153.t1 | MTR_5g080120 | 73.214 | 56 | 9 | 1 | 321 | 370 | 1 | 56 | 5.92e-19 | 80.9 |
| MS.gene50153.t1 | MTR_2g047858 | 23.629 | 474 | 289 | 15 | 6 | 464 | 115 | 530 | 6.09e-18 | 86.7 |
| MS.gene50153.t1 | MTR_8g468470 | 26.106 | 452 | 274 | 22 | 4 | 426 | 12 | 432 | 2.02e-16 | 82.0 |
| MS.gene50153.t1 | MTR_1g071060 | 42.222 | 90 | 51 | 1 | 38 | 127 | 7 | 95 | 6.78e-15 | 70.5 |
| MS.gene50153.t1 | MTR_1g021825 | 23.555 | 467 | 288 | 17 | 6 | 463 | 17 | 423 | 8.74e-15 | 76.6 |
| MS.gene50153.t1 | MTR_1g021825 | 23.555 | 467 | 288 | 17 | 6 | 463 | 88 | 494 | 9.21e-15 | 76.6 |
| MS.gene50153.t1 | MTR_1g013580 | 22.642 | 477 | 286 | 15 | 5 | 463 | 18 | 429 | 3.15e-14 | 74.7 |
| MS.gene50153.t1 | MTR_4g045900 | 22.973 | 518 | 309 | 20 | 5 | 462 | 25 | 512 | 4.92e-14 | 74.7 |
| MS.gene50153.t1 | MTR_2g047872 | 23.355 | 471 | 289 | 15 | 6 | 463 | 23 | 434 | 1.12e-13 | 73.2 |
| MS.gene50153.t1 | MTR_5g040850 | 23.142 | 471 | 293 | 14 | 3 | 463 | 4 | 415 | 4.89e-11 | 64.7 |
| MS.gene50153.t1 | MTR_5g039950 | 22.819 | 447 | 263 | 16 | 6 | 437 | 23 | 402 | 6.24e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50153.t1 | AT1G56400 | 33.102 | 432 | 263 | 13 | 2 | 419 | 9 | 428 | 1.01e-65 | 219 |
| MS.gene50153.t1 | AT3G62230 | 30.913 | 427 | 287 | 5 | 2 | 425 | 4 | 425 | 2.09e-60 | 204 |
| MS.gene50153.t1 | AT3G29830 | 32.653 | 441 | 261 | 14 | 6 | 427 | 8 | 431 | 4.00e-59 | 201 |
| MS.gene50153.t1 | AT3G29830 | 32.353 | 442 | 262 | 14 | 6 | 427 | 8 | 432 | 8.25e-59 | 200 |
| MS.gene50153.t1 | AT5G54820 | 31.066 | 441 | 278 | 11 | 2 | 425 | 3 | 434 | 4.67e-57 | 196 |
| MS.gene50153.t1 | AT1G56400 | 31.019 | 432 | 231 | 14 | 2 | 419 | 9 | 387 | 9.45e-51 | 178 |
| MS.gene50153.t1 | AT1G61330 | 26.327 | 471 | 283 | 20 | 11 | 457 | 15 | 445 | 4.97e-20 | 92.8 |
| MS.gene50153.t1 | AT2G17305 | 34.437 | 151 | 86 | 5 | 297 | 444 | 104 | 244 | 5.23e-18 | 84.3 |
| MS.gene50153.t1 | AT3G58860 | 23.666 | 431 | 291 | 11 | 5 | 425 | 6 | 408 | 4.91e-17 | 83.6 |
| MS.gene50153.t1 | AT3G58880 | 24.786 | 468 | 278 | 18 | 5 | 438 | 2 | 429 | 2.87e-16 | 81.3 |
| MS.gene50153.t1 | AT5G53635 | 23.457 | 486 | 277 | 15 | 9 | 463 | 3 | 424 | 4.66e-16 | 80.5 |
| MS.gene50153.t1 | AT1G69630 | 24.795 | 488 | 285 | 20 | 5 | 464 | 17 | 450 | 1.24e-15 | 79.3 |
| MS.gene50153.t1 | AT5G22730 | 23.395 | 483 | 303 | 15 | 6 | 465 | 28 | 466 | 3.27e-15 | 78.2 |
| MS.gene50153.t1 | AT5G22730 | 23.395 | 483 | 303 | 15 | 6 | 465 | 28 | 466 | 3.27e-15 | 78.2 |
| MS.gene50153.t1 | AT3G58920 | 23.047 | 512 | 297 | 15 | 5 | 464 | 1 | 467 | 3.24e-14 | 75.1 |
| MS.gene50153.t1 | AT3G58900 | 24.115 | 452 | 283 | 15 | 5 | 425 | 1 | 423 | 1.78e-13 | 72.8 |
| MS.gene50153.t1 | AT5G22670 | 24.045 | 445 | 272 | 11 | 6 | 427 | 11 | 412 | 4.60e-13 | 71.2 |
| MS.gene50153.t1 | AT1G66310 | 22.614 | 482 | 293 | 14 | 5 | 464 | 18 | 441 | 6.15e-13 | 70.9 |
| MS.gene50153.t1 | AT5G03100 | 27.206 | 272 | 160 | 8 | 2 | 270 | 5 | 241 | 2.46e-12 | 68.2 |
| MS.gene50153.t1 | AT5G03100 | 27.206 | 272 | 160 | 8 | 2 | 270 | 5 | 241 | 2.46e-12 | 68.2 |
| MS.gene50153.t1 | AT1G80470 | 23.853 | 436 | 279 | 15 | 6 | 426 | 15 | 412 | 3.85e-12 | 68.6 |
| MS.gene50153.t1 | AT5G02930 | 23.500 | 400 | 255 | 10 | 1 | 378 | 23 | 393 | 1.01e-11 | 67.4 |
| MS.gene50153.t1 | AT1G66290 | 22.727 | 484 | 297 | 19 | 2 | 464 | 25 | 452 | 1.10e-11 | 67.0 |
| MS.gene50153.t1 | AT1G13780 | 24.612 | 451 | 277 | 16 | 6 | 428 | 10 | 425 | 1.41e-11 | 66.6 |
| MS.gene50153.t1 | AT3G59240 | 23.562 | 365 | 246 | 11 | 6 | 356 | 8 | 353 | 1.67e-11 | 66.6 |
| MS.gene50153.t1 | AT5G44980 | 23.894 | 452 | 260 | 19 | 6 | 425 | 4 | 403 | 2.57e-11 | 65.9 |
| MS.gene50153.t1 | AT5G44980 | 23.894 | 452 | 260 | 19 | 6 | 425 | 4 | 403 | 2.57e-11 | 65.9 |
| MS.gene50153.t1 | AT1G66300 | 20.359 | 501 | 291 | 15 | 2 | 464 | 25 | 455 | 4.72e-11 | 65.1 |
| MS.gene50153.t1 | AT5G22610 | 23.871 | 465 | 289 | 16 | 6 | 458 | 18 | 429 | 6.06e-11 | 64.7 |
Find 78 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAAAAGCTTCAACTAATT+TGG | 0.114713 | 5.4:-62920333 | MS.gene50153:CDS |
| TAATCGAAAACCTTTAAATT+TGG | 0.121151 | 5.4:+62921997 | None:intergenic |
| GTTCTCACAGCTTCCTTAAA+AGG | 0.147884 | 5.4:+62922657 | None:intergenic |
| CAATATTTCTCTGGGATAAT+AGG | 0.157160 | 5.4:+62920581 | None:intergenic |
| TATCCTTAAGGGAGAATATT+TGG | 0.162179 | 5.4:-62922082 | MS.gene50153:CDS |
| AATTAATACCCCAAATTTAA+AGG | 0.179731 | 5.4:-62922007 | MS.gene50153:CDS |
| TAATGACCGTTTGTAGTTAT+TGG | 0.199391 | 5.4:-62921834 | MS.gene50153:CDS |
| TCTAAAGAAGGTTGAGATTA+AGG | 0.199622 | 5.4:-62920519 | MS.gene50153:CDS |
| TCCAAATTAGTTGAAGCTTT+TGG | 0.217936 | 5.4:+62920332 | None:intergenic |
| AATCGAAAACCTTTAAATTT+GGG | 0.226809 | 5.4:+62921998 | None:intergenic |
| TTCACTCAAAGAAATTTCTT+TGG | 0.256696 | 5.4:-62922205 | MS.gene50153:CDS |
| CTTCAATCCTTTCTAAAGAT+TGG | 0.259734 | 5.4:-62922635 | MS.gene50153:CDS |
| CTATTATCCCAGAGAAATAT+TGG | 0.265932 | 5.4:-62920580 | MS.gene50153:CDS |
| ATCCTTAAGGGAGAATATTT+GGG | 0.293885 | 5.4:-62922081 | MS.gene50153:CDS |
| CGTTTGTAGTTATTGGCTTC+AGG | 0.316982 | 5.4:-62921827 | MS.gene50153:intron |
| ATTGATGCTCATCTTTCTTA+AGG | 0.321601 | 5.4:+62920436 | None:intergenic |
| TTCAATCCTTTCTAAAGATT+GGG | 0.346578 | 5.4:-62922634 | MS.gene50153:CDS |
| ACCCCAAATATTCTCCCTTA+AGG | 0.356649 | 5.4:+62922079 | None:intergenic |
| CTAAAGAAGGTTGAGATTAA+GGG | 0.362591 | 5.4:-62920518 | MS.gene50153:CDS |
| AAGAAATGGAGTGAAAGATT+TGG | 0.363394 | 5.4:-62922388 | MS.gene50153:CDS |
| TCACTCAAAGAAATTTCTTT+GGG | 0.365457 | 5.4:-62922204 | MS.gene50153:CDS |
| AATATTTCTCTGGGATAATA+GGG | 0.369301 | 5.4:+62920582 | None:intergenic |
| ATGTCCTCACAAAATACTTT+AGG | 0.372336 | 5.4:+62922435 | None:intergenic |
| ATTGTGAGATGCTCTAGGTT+AGG | 0.393149 | 5.4:+62921409 | None:intergenic |
| ACTCTCCAACATTTCACAAT+TGG | 0.398161 | 5.4:+62922140 | None:intergenic |
| TATAAGTGCTGGAGTTTGAA+TGG | 0.399073 | 5.4:-62922108 | MS.gene50153:CDS |
| GTATCAATCCAATATTTCTC+TGG | 0.403176 | 5.4:+62920572 | None:intergenic |
| TTGCACCAGTTTGAGTTTGA+GGG | 0.415657 | 5.4:-62921457 | MS.gene50153:CDS |
| TTTGCACCAGTTTGAGTTTG+AGG | 0.415695 | 5.4:-62921458 | MS.gene50153:CDS |
| CCTTCTCCCAATCTTTAGAA+AGG | 0.422998 | 5.4:+62922628 | None:intergenic |
| ATTACATTCGCTATAAGAAA+TGG | 0.427802 | 5.4:-62922402 | MS.gene50153:CDS |
| TAATTCCCTCAAACTCAAAC+TGG | 0.433830 | 5.4:+62921452 | None:intergenic |
| TAGATTTCACTTCTCCATCA+TGG | 0.434803 | 5.4:-62922362 | MS.gene50153:CDS |
| TCACGACGGGCAGTGACATT+CGG | 0.436826 | 5.4:+62920380 | None:intergenic |
| TTTAACCAATTGTGAAATGT+TGG | 0.437065 | 5.4:-62922145 | MS.gene50153:CDS |
| TCATGGGAGTTAACATTGAC+TGG | 0.438728 | 5.4:-62922728 | MS.gene50153:CDS |
| TTACTTACTTCCTCCTTCGT+GGG | 0.445648 | 5.4:-62920463 | MS.gene50153:CDS |
| TTCTCACAGCTTCCTTAAAA+GGG | 0.446194 | 5.4:+62922658 | None:intergenic |
| CTTACTTACTTCCTCCTTCG+TGG | 0.447019 | 5.4:-62920464 | MS.gene50153:CDS |
| CGATATTCAATCACCTGCCT+TGG | 0.447343 | 5.4:-62921953 | MS.gene50153:CDS |
| AGTTATGTTTATGAGTATAG+TGG | 0.449164 | 5.4:-62922288 | MS.gene50153:CDS |
| GGTTGAGATTAAGGGCTTCA+AGG | 0.458222 | 5.4:-62920510 | MS.gene50153:CDS |
| AACTTATCTTTGATCCATGA+TGG | 0.470021 | 5.4:+62922348 | None:intergenic |
| TTGTGAGATGCTCTAGGTTA+GGG | 0.470412 | 5.4:+62921410 | None:intergenic |
| AGCTTCCTTAAAAGGGAGAT+AGG | 0.475195 | 5.4:+62922665 | None:intergenic |
| ATCGAAAACCTTTAAATTTG+GGG | 0.491211 | 5.4:+62921999 | None:intergenic |
| AGTAAATATAAGTGCTATTG+AGG | 0.494633 | 5.4:-62922172 | MS.gene50153:CDS |
| CACGAAGGAGGAAGTAAGTA+AGG | 0.503956 | 5.4:+62920465 | None:intergenic |
| CTACAAACGGTCATTACTCT+AGG | 0.515973 | 5.4:+62921841 | None:intergenic |
| TCAATCACCTGCCTTGGATG+AGG | 0.521562 | 5.4:-62921947 | MS.gene50153:CDS |
| TTTCAATTGTGAGATGCTCT+AGG | 0.524583 | 5.4:+62921404 | None:intergenic |
| GTTGAGATTAAGGGCTTCAA+GGG | 0.530278 | 5.4:-62920509 | MS.gene50153:CDS |
| TGTGAAATCACATCTAAAGA+AGG | 0.534472 | 5.4:-62920531 | MS.gene50153:CDS |
| CTGAAGCCAATAACTACAAA+CGG | 0.537936 | 5.4:+62921828 | None:intergenic |
| TATCAATCCAATATTTCTCT+GGG | 0.540358 | 5.4:+62920573 | None:intergenic |
| AACATAACTATCCAAATCAT+CGG | 0.542752 | 5.4:+62922302 | None:intergenic |
| TTACTTCCTCCTTCGTGGGG+AGG | 0.552209 | 5.4:-62920459 | MS.gene50153:CDS |
| TCTCACAATTGAAATTGTTG+AGG | 0.560750 | 5.4:-62921395 | MS.gene50153:CDS |
| GTCTTTGACATCCATGCTCA+AGG | 0.567591 | 5.4:+62921908 | None:intergenic |
| AGATCTAGCTATTTCACGAC+GGG | 0.575598 | 5.4:+62920367 | None:intergenic |
| TTCAAGATTAACCTCATCCA+AGG | 0.580398 | 5.4:+62921936 | None:intergenic |
| TCCTTAAGGGAGAATATTTG+GGG | 0.581736 | 5.4:-62922080 | MS.gene50153:CDS |
| ACGGTCATTACTCTAGGCGA+AGG | 0.584876 | 5.4:+62921847 | None:intergenic |
| AGATTAACCTCATCCAAGGC+AGG | 0.589766 | 5.4:+62921940 | None:intergenic |
| TCTGGGATAATAGGGAACAC+TGG | 0.591347 | 5.4:+62920590 | None:intergenic |
| TAAAGATGACGTGAAAGAAG+AGG | 0.599575 | 5.4:-62920408 | MS.gene50153:CDS |
| TTAAGGCCTCCCCACGAAGG+AGG | 0.600750 | 5.4:+62920453 | None:intergenic |
| TCTTTGAAATTGTATTCATG+CGG | 0.602157 | 5.4:-62922258 | MS.gene50153:CDS |
| TACTTACTTCCTCCTTCGTG+GGG | 0.608588 | 5.4:-62920462 | MS.gene50153:CDS |
| TGAGCATGAACAATTTCATG+AGG | 0.614393 | 5.4:+62922546 | None:intergenic |
| CCTTTCTAAAGATTGGGAGA+AGG | 0.622716 | 5.4:-62922628 | MS.gene50153:CDS |
| ACGTACACGTCGTAACATGA+AGG | 0.624322 | 5.4:-62921506 | MS.gene50153:CDS |
| TTCTTAAGGCCTCCCCACGA+AGG | 0.625731 | 5.4:+62920450 | None:intergenic |
| GAAAAGAAAATTTATACTCG+AGG | 0.627680 | 5.4:-62921535 | MS.gene50153:intron |
| CGGTCATTACTCTAGGCGAA+GGG | 0.643548 | 5.4:+62921848 | None:intergenic |
| GAGCATGGATGTCAAAGACA+TGG | 0.651533 | 5.4:-62921904 | MS.gene50153:CDS |
| AAGATCTAGCTATTTCACGA+CGG | 0.693257 | 5.4:+62920366 | None:intergenic |
| GATGACGTGAAAGAAGAGGT+CGG | 0.711693 | 5.4:-62920404 | MS.gene50153:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATACATAACAATTAAT+TGG | + | chr5.4:62921270-62921289 | None:intergenic | 10.0% |
| !! | CAAAATATATAAATTAACTT+AGG | - | chr5.4:62921973-62921992 | MS.gene50153:CDS | 10.0% |
| !! | TTAAATCTATATAACATATA+CGG | + | chr5.4:62921726-62921745 | None:intergenic | 10.0% |
| !!! | ATAGATTTAATTTTTTTTAG+AGG | - | chr5.4:62921736-62921755 | MS.gene50153:intron | 10.0% |
| !!! | TAGATTTAATTTTTTTTAGA+GGG | - | chr5.4:62921737-62921756 | MS.gene50153:intron | 10.0% |
| !! | TAATTTGAATTCATTAATGT+CGG | - | chr5.4:62921777-62921796 | MS.gene50153:intron | 15.0% |
| !!! | AAAGTTACATTGTTTAATTT+TGG | - | chr5.4:62921923-62921942 | MS.gene50153:CDS | 15.0% |
| !!! | AACATTTTTTTATAATTCGA+AGG | - | chr5.4:62922303-62922322 | MS.gene50153:CDS | 15.0% |
| !!! | ATGTCTTAATTTTTTTCAAA+AGG | + | chr5.4:62922396-62922415 | None:intergenic | 15.0% |
| !! | AAAAAATGGATAGAAAATCA+TGG | - | chr5.4:62920544-62920563 | MS.gene50153:CDS | 20.0% |
| !! | AATCGAAAACCTTTAAATTT+GGG | + | chr5.4:62921047-62921066 | None:intergenic | 20.0% |
| !! | AATTAATACCCCAAATTTAA+AGG | - | chr5.4:62921035-62921054 | MS.gene50153:intron | 20.0% |
| !! | TAAAGACAATTCTTAAGTTA+AGG | + | chr5.4:62921298-62921317 | None:intergenic | 20.0% |
| !! | TAATCGAAAACCTTTAAATT+TGG | + | chr5.4:62921048-62921067 | None:intergenic | 20.0% |
| !! | TATGTTCCATATAAATTTAG+TGG | + | chr5.4:62922136-62922155 | None:intergenic | 20.0% |
| !! | TGAAAAAATTGGTTATCAAT+AGG | - | chr5.4:62920986-62921005 | MS.gene50153:intron | 20.0% |
| !! | TTGTAAAAAATGACAACATA+AGG | - | chr5.4:62922050-62922069 | MS.gene50153:CDS | 20.0% |
| !!! | GTTTAAATTTTTATAAGTGC+TGG | - | chr5.4:62920923-62920942 | MS.gene50153:intron | 20.0% |
| !!! | TTAAAGGTTTTCGATTATAA+CGG | - | chr5.4:62921051-62921070 | MS.gene50153:intron | 20.0% |
| !!! | TTTTGGATTTCATGAAAAAA+TGG | - | chr5.4:62920530-62920549 | MS.gene50153:CDS | 20.0% |
| ! | AACATAACTATCCAAATCAT+CGG | + | chr5.4:62920743-62920762 | None:intergenic | 25.0% |
| ! | AGTTATGTTTATGAGTATAG+TGG | - | chr5.4:62920754-62920773 | MS.gene50153:intron | 25.0% |
| ! | ATCGAAAACCTTTAAATTTG+GGG | + | chr5.4:62921046-62921065 | None:intergenic | 25.0% |
| ! | ATTACATTCGCTATAAGAAA+TGG | - | chr5.4:62920640-62920659 | MS.gene50153:intron | 25.0% |
| ! | GAAAAGAAAATTTATACTCG+AGG | - | chr5.4:62921507-62921526 | MS.gene50153:CDS | 25.0% |
| ! | TATCAATCCAATATTTCTCT+GGG | + | chr5.4:62922472-62922491 | None:intergenic | 25.0% |
| ! | TCACTCAAAGAAATTTCTTT+GGG | - | chr5.4:62920838-62920857 | MS.gene50153:intron | 25.0% |
| ! | TGAGTTCCACTAAATTTATA+TGG | - | chr5.4:62922127-62922146 | MS.gene50153:CDS | 25.0% |
| ! | TTCACTCAAAGAAATTTCTT+TGG | - | chr5.4:62920837-62920856 | MS.gene50153:intron | 25.0% |
| ! | TTTAACCAATTGTGAAATGT+TGG | - | chr5.4:62920897-62920916 | MS.gene50153:intron | 25.0% |
| !! | AGTAAATATAAGTGCTATTG+AGG | - | chr5.4:62920870-62920889 | MS.gene50153:intron | 25.0% |
| !! | ATATTTGGGGTTGAAAAAAT+TGG | - | chr5.4:62920975-62920994 | MS.gene50153:intron | 25.0% |
| !! | GTTTTCTTTCTATGATTTTG+TGG | - | chr5.4:62920714-62920733 | MS.gene50153:intron | 25.0% |
| !! | TAAAGGTTTTCGATTATAAC+GGG | - | chr5.4:62921052-62921071 | MS.gene50153:intron | 25.0% |
| !! | TTCAATCCTTTCTAAAGATT+GGG | - | chr5.4:62920408-62920427 | MS.gene50153:CDS | 25.0% |
| !!! | AATATTTCTCTGGGATAATA+GGG | + | chr5.4:62922463-62922482 | None:intergenic | 25.0% |
| !!! | TCTTTGAAATTGTATTCATG+CGG | - | chr5.4:62920784-62920803 | MS.gene50153:intron | 25.0% |
| !!! | TTGAATGGTTTTATCCTTAA+GGG | - | chr5.4:62920949-62920968 | MS.gene50153:intron | 25.0% |
| !!! | TTTGAATGGTTTTATCCTTA+AGG | - | chr5.4:62920948-62920967 | MS.gene50153:intron | 25.0% |
| AACTTATCTTTGATCCATGA+TGG | + | chr5.4:62920697-62920716 | None:intergenic | 30.0% | |
| AAGAAATGGAGTGAAAGATT+TGG | - | chr5.4:62920654-62920673 | MS.gene50153:intron | 30.0% | |
| AATATACTTAAAGTCGAAGC+TGG | + | chr5.4:62921355-62921374 | None:intergenic | 30.0% | |
| ATCCTTAAGGGAGAATATTT+GGG | - | chr5.4:62920961-62920980 | MS.gene50153:intron | 30.0% | |
| ATGTCCTCACAAAATACTTT+AGG | + | chr5.4:62920610-62920629 | None:intergenic | 30.0% | |
| ATTGATGCTCATCTTTCTTA+AGG | + | chr5.4:62922609-62922628 | None:intergenic | 30.0% | |
| CTAAAGAAGGTTGAGATTAA+GGG | - | chr5.4:62922524-62922543 | MS.gene50153:CDS | 30.0% | |
| CTATTATCCCAGAGAAATAT+TGG | - | chr5.4:62922462-62922481 | MS.gene50153:CDS | 30.0% | |
| GTATCAATCCAATATTTCTC+TGG | + | chr5.4:62922473-62922492 | None:intergenic | 30.0% | |
| TAATGACCGTTTGTAGTTAT+TGG | - | chr5.4:62921208-62921227 | MS.gene50153:intron | 30.0% | |
| TATATGGAACATACGTAACT+TGG | - | chr5.4:62922143-62922162 | MS.gene50153:CDS | 30.0% | |
| TATCCTTAAGGGAGAATATT+TGG | - | chr5.4:62920960-62920979 | MS.gene50153:intron | 30.0% | |
| TCCAAAAGCTTCAACTAATT+TGG | - | chr5.4:62922709-62922728 | MS.gene50153:CDS | 30.0% | |
| TCTAAAGAAGGTTGAGATTA+AGG | - | chr5.4:62922523-62922542 | MS.gene50153:CDS | 30.0% | |
| TCTCACAATTGAAATTGTTG+AGG | - | chr5.4:62921647-62921666 | MS.gene50153:intron | 30.0% | |
| TGTGAAATCACATCTAAAGA+AGG | - | chr5.4:62922511-62922530 | MS.gene50153:CDS | 30.0% | |
| ! | CTTCAATCCTTTCTAAAGAT+TGG | - | chr5.4:62920407-62920426 | MS.gene50153:CDS | 30.0% |
| ! | TCCAAATTAGTTGAAGCTTT+TGG | + | chr5.4:62922713-62922732 | None:intergenic | 30.0% |
| ! | TGCTCAAAGAATGACATTTT+TGG | - | chr5.4:62920513-62920532 | MS.gene50153:CDS | 30.0% |
| ! | TTTAGAGGGTATATGTTAGA+AGG | - | chr5.4:62921751-62921770 | MS.gene50153:intron | 30.0% |
| !! | CAATATTTCTCTGGGATAAT+AGG | + | chr5.4:62922464-62922483 | None:intergenic | 30.0% |
| ACTCTCCAACATTTCACAAT+TGG | + | chr5.4:62920905-62920924 | None:intergenic | 35.0% | |
| CTGAAGCCAATAACTACAAA+CGG | + | chr5.4:62921217-62921236 | None:intergenic | 35.0% | |
| TAAAGATGACGTGAAAGAAG+AGG | - | chr5.4:62922634-62922653 | MS.gene50153:CDS | 35.0% | |
| TAATTCCCTCAAACTCAAAC+TGG | + | chr5.4:62921593-62921612 | None:intergenic | 35.0% | |
| TAGATTTCACTTCTCCATCA+TGG | - | chr5.4:62920680-62920699 | MS.gene50153:intron | 35.0% | |
| TCCTTAAGGGAGAATATTTG+GGG | - | chr5.4:62920962-62920981 | MS.gene50153:intron | 35.0% | |
| TCGAAGCTGGTCATATTAAA+GGG | + | chr5.4:62921342-62921361 | None:intergenic | 35.0% | |
| TGAGCATGAACAATTTCATG+AGG | + | chr5.4:62920499-62920518 | None:intergenic | 35.0% | |
| TTCAAGATTAACCTCATCCA+AGG | + | chr5.4:62921109-62921128 | None:intergenic | 35.0% | |
| TTCTCACAGCTTCCTTAAAA+GGG | + | chr5.4:62920387-62920406 | None:intergenic | 35.0% | |
| TTTCAATTGTGAGATGCTCT+AGG | + | chr5.4:62921641-62921660 | None:intergenic | 35.0% | |
| ! | AAGATCTAGCTATTTCACGA+CGG | + | chr5.4:62922679-62922698 | None:intergenic | 35.0% |
| ! | CTTGAATTTTTCCTTGAGCA+TGG | - | chr5.4:62921123-62921142 | MS.gene50153:intron | 35.0% |
| !! | AGCTCCTAAAGTATTTTGTG+AGG | - | chr5.4:62920603-62920622 | MS.gene50153:intron | 35.0% |
| !! | TATAAGTGCTGGAGTTTGAA+TGG | - | chr5.4:62920934-62920953 | MS.gene50153:intron | 35.0% |
| ACCCCAAATATTCTCCCTTA+AGG | + | chr5.4:62920966-62920985 | None:intergenic | 40.0% | |
| AGAGTGTGTTGAAATGTGTG+TGG | - | chr5.4:62922196-62922215 | MS.gene50153:CDS | 40.0% | |
| AGCTTCCTTAAAAGGGAGAT+AGG | + | chr5.4:62920380-62920399 | None:intergenic | 40.0% | |
| ATGGAACATACGTAACTTGG+TGG | - | chr5.4:62922146-62922165 | MS.gene50153:CDS | 40.0% | |
| CTACAAACGGTCATTACTCT+AGG | + | chr5.4:62921204-62921223 | None:intergenic | 40.0% | |
| GTCGAAGCTGGTCATATTAA+AGG | + | chr5.4:62921343-62921362 | None:intergenic | 40.0% | |
| GTTCTCACAGCTTCCTTAAA+AGG | + | chr5.4:62920388-62920407 | None:intergenic | 40.0% | |
| GTTGAGATTAAGGGCTTCAA+GGG | - | chr5.4:62922533-62922552 | MS.gene50153:CDS | 40.0% | |
| TGGAACATACGTAACTTGGT+GGG | - | chr5.4:62922147-62922166 | MS.gene50153:CDS | 40.0% | |
| TTACTTACTTCCTCCTTCGT+GGG | - | chr5.4:62922579-62922598 | MS.gene50153:CDS | 40.0% | |
| ! | AGATCTAGCTATTTCACGAC+GGG | + | chr5.4:62922678-62922697 | None:intergenic | 40.0% |
| ! | ATTGTGAGATGCTCTAGGTT+AGG | + | chr5.4:62921636-62921655 | None:intergenic | 40.0% |
| ! | CCTTCTCCCAATCTTTAGAA+AGG | + | chr5.4:62920417-62920436 | None:intergenic | 40.0% |
| ! | CCTTTCTAAAGATTGGGAGA+AGG | - | chr5.4:62920414-62920433 | MS.gene50153:CDS | 40.0% |
| ! | TGTCTCCTATCTCCCTTTTA+AGG | - | chr5.4:62920372-62920391 | MS.gene50153:CDS | 40.0% |
| ! | TTGCACCAGTTTGAGTTTGA+GGG | - | chr5.4:62921585-62921604 | MS.gene50153:intron | 40.0% |
| ! | TTGTGAGATGCTCTAGGTTA+GGG | + | chr5.4:62921635-62921654 | None:intergenic | 40.0% |
| ! | TTTGCACCAGTTTGAGTTTG+AGG | - | chr5.4:62921584-62921603 | MS.gene50153:intron | 40.0% |
| ! | TTTTGTGGCTTCCGATGATT+TGG | - | chr5.4:62920729-62920748 | MS.gene50153:intron | 40.0% |
| !! | CGTTTGTAGTTATTGGCTTC+AGG | - | chr5.4:62921215-62921234 | MS.gene50153:intron | 40.0% |
| ACGTACACGTCGTAACATGA+AGG | - | chr5.4:62921536-62921555 | MS.gene50153:intron | 45.0% | |
| AGATTAACCTCATCCAAGGC+AGG | + | chr5.4:62921105-62921124 | None:intergenic | 45.0% | |
| CACGAAGGAGGAAGTAAGTA+AGG | + | chr5.4:62922580-62922599 | None:intergenic | 45.0% | |
| CGATATTCAATCACCTGCCT+TGG | - | chr5.4:62921089-62921108 | MS.gene50153:intron | 45.0% | |
| CTTACTTACTTCCTCCTTCG+TGG | - | chr5.4:62922578-62922597 | MS.gene50153:CDS | 45.0% | |
| GAGCATGGATGTCAAAGACA+TGG | - | chr5.4:62921138-62921157 | MS.gene50153:intron | 45.0% | |
| GATGACGTGAAAGAAGAGGT+CGG | - | chr5.4:62922638-62922657 | MS.gene50153:CDS | 45.0% | |
| GGTTGAGATTAAGGGCTTCA+AGG | - | chr5.4:62922532-62922551 | MS.gene50153:CDS | 45.0% | |
| GTCTTTGACATCCATGCTCA+AGG | + | chr5.4:62921137-62921156 | None:intergenic | 45.0% | |
| TACTTACTTCCTCCTTCGTG+GGG | - | chr5.4:62922580-62922599 | MS.gene50153:CDS | 45.0% | |
| TTGAAATGTGTGTGGACGTG+TGG | - | chr5.4:62922204-62922223 | MS.gene50153:CDS | 45.0% | |
| ! | CGGTTTTTCTGCTAGCGAAA+TGG | - | chr5.4:62920804-62920823 | MS.gene50153:intron | 45.0% |
| ! | CGTAACTTGGTGGGACTTAA+AGG | - | chr5.4:62922156-62922175 | MS.gene50153:CDS | 45.0% |
| ! | TCTGGGATAATAGGGAACAC+TGG | + | chr5.4:62922455-62922474 | None:intergenic | 45.0% |
| !!! | AAATGATAAATTATTTTTTT+CGG | - | chr5.4:62921434-62921453 | MS.gene50153:CDS | 5.0% |
| !!! | TTTTTTATTATCTTTAATAA+CGG | - | chr5.4:62921470-62921489 | MS.gene50153:CDS | 5.0% |
| ACGGTCATTACTCTAGGCGA+AGG | + | chr5.4:62921198-62921217 | None:intergenic | 50.0% | |
| CGGTCATTACTCTAGGCGAA+GGG | + | chr5.4:62921197-62921216 | None:intergenic | 50.0% | |
| TCAATCACCTGCCTTGGATG+AGG | - | chr5.4:62921095-62921114 | MS.gene50153:intron | 50.0% | |
| GTGTGTGGACGTGTGGTAGA+GGG | - | chr5.4:62922211-62922230 | MS.gene50153:CDS | 55.0% | |
| TCACGACGGGCAGTGACATT+CGG | + | chr5.4:62922665-62922684 | None:intergenic | 55.0% | |
| TGTGTGTGGACGTGTGGTAG+AGG | - | chr5.4:62922210-62922229 | MS.gene50153:CDS | 55.0% | |
| TTACTTCCTCCTTCGTGGGG+AGG | - | chr5.4:62922583-62922602 | MS.gene50153:CDS | 55.0% | |
| TTCTTAAGGCCTCCCCACGA+AGG | + | chr5.4:62922595-62922614 | None:intergenic | 55.0% | |
| TTAAGGCCTCCCCACGAAGG+AGG | + | chr5.4:62922592-62922611 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 62920316 | 62922748 | 62920316 | ID=MS.gene50153 |
| chr5.4 | mRNA | 62920316 | 62922748 | 62920316 | ID=MS.gene50153.t1;Parent=MS.gene50153 |
| chr5.4 | exon | 62921828 | 62922748 | 62921828 | ID=MS.gene50153.t1.exon1;Parent=MS.gene50153.t1 |
| chr5.4 | CDS | 62921828 | 62922748 | 62921828 | ID=cds.MS.gene50153.t1;Parent=MS.gene50153.t1 |
| chr5.4 | exon | 62921381 | 62921551 | 62921381 | ID=MS.gene50153.t1.exon2;Parent=MS.gene50153.t1 |
| chr5.4 | CDS | 62921381 | 62921551 | 62921381 | ID=cds.MS.gene50153.t1;Parent=MS.gene50153.t1 |
| chr5.4 | exon | 62920316 | 62920621 | 62920316 | ID=MS.gene50153.t1.exon3;Parent=MS.gene50153.t1 |
| chr5.4 | CDS | 62920316 | 62920621 | 62920316 | ID=cds.MS.gene50153.t1;Parent=MS.gene50153.t1 |
| Gene Sequence |
| Protein sequence |
