Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29498.t1 | AES99385.1 | 80.1 | 408 | 50 | 1 | 4 | 411 | 3 | 379 | 7.20E-183 | 650.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29498.t1 | Q9C7X8 | 33.0 | 424 | 262 | 11 | 6 | 417 | 13 | 426 | 2.6e-56 | 221.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29498.t1 | G7KBT2 | 80.1 | 408 | 50 | 1 | 4 | 411 | 3 | 379 | 5.2e-183 | 650.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29498.t1 | MTR_5g080150 | 80.049 | 411 | 50 | 2 | 1 | 411 | 1 | 379 | 0.0 | 650 |
| MS.gene29498.t1 | MTR_2g048140 | 39.440 | 464 | 265 | 9 | 4 | 464 | 5 | 455 | 6.26e-97 | 299 |
| MS.gene29498.t1 | MTR_1g090907 | 38.280 | 465 | 268 | 10 | 4 | 464 | 5 | 454 | 1.81e-92 | 288 |
| MS.gene29498.t1 | MTR_3g448340 | 38.174 | 482 | 256 | 11 | 1 | 463 | 1 | 459 | 5.50e-91 | 284 |
| MS.gene29498.t1 | MTR_1g090903 | 33.108 | 444 | 224 | 13 | 31 | 464 | 30 | 410 | 3.88e-68 | 223 |
| MS.gene29498.t1 | MTR_5g080160 | 85.437 | 103 | 15 | 0 | 363 | 465 | 58 | 160 | 1.55e-54 | 179 |
| MS.gene29498.t1 | MTR_5g080160 | 84.211 | 57 | 8 | 1 | 1 | 56 | 1 | 57 | 9.87e-23 | 94.7 |
| MS.gene29498.t1 | MTR_3g049530 | 28.367 | 490 | 247 | 11 | 1 | 462 | 1 | 414 | 9.49e-47 | 167 |
| MS.gene29498.t1 | MTR_7g029260 | 54.762 | 126 | 56 | 1 | 309 | 433 | 36 | 161 | 2.29e-39 | 142 |
| MS.gene29498.t1 | MTR_5g080110 | 80.597 | 67 | 13 | 0 | 1 | 67 | 1 | 67 | 9.53e-31 | 113 |
| MS.gene29498.t1 | MTR_5g080090 | 71.429 | 77 | 12 | 2 | 335 | 410 | 39 | 106 | 2.48e-26 | 103 |
| MS.gene29498.t1 | MTR_5g066900 | 60.976 | 82 | 17 | 1 | 19 | 100 | 19 | 85 | 1.07e-24 | 97.8 |
| MS.gene29498.t1 | MTR_5g066890 | 53.409 | 88 | 39 | 1 | 321 | 408 | 1 | 86 | 2.86e-23 | 94.0 |
| MS.gene29498.t1 | MTR_5g080120 | 75.000 | 56 | 8 | 1 | 321 | 370 | 1 | 56 | 1.39e-19 | 82.8 |
| MS.gene29498.t1 | MTR_2g047858 | 23.256 | 473 | 292 | 14 | 6 | 464 | 115 | 530 | 5.57e-18 | 87.0 |
| MS.gene29498.t1 | MTR_8g468470 | 26.106 | 452 | 274 | 22 | 4 | 426 | 12 | 432 | 2.13e-16 | 81.6 |
| MS.gene29498.t1 | MTR_1g021825 | 24.145 | 468 | 284 | 18 | 6 | 463 | 88 | 494 | 3.16e-15 | 78.2 |
| MS.gene29498.t1 | MTR_1g021825 | 24.145 | 468 | 284 | 18 | 6 | 463 | 17 | 423 | 3.30e-15 | 77.8 |
| MS.gene29498.t1 | MTR_2g047872 | 23.779 | 471 | 287 | 15 | 6 | 463 | 23 | 434 | 6.41e-15 | 77.0 |
| MS.gene29498.t1 | MTR_1g013580 | 23.061 | 477 | 284 | 15 | 5 | 463 | 18 | 429 | 6.48e-15 | 77.0 |
| MS.gene29498.t1 | MTR_1g071060 | 42.222 | 90 | 51 | 1 | 38 | 127 | 7 | 95 | 6.98e-15 | 70.5 |
| MS.gene29498.t1 | MTR_4g045900 | 23.166 | 518 | 308 | 20 | 5 | 462 | 25 | 512 | 1.94e-14 | 75.9 |
| MS.gene29498.t1 | MTR_5g040850 | 23.567 | 471 | 291 | 15 | 3 | 463 | 4 | 415 | 1.64e-11 | 66.2 |
| MS.gene29498.t1 | MTR_5g039950 | 22.819 | 447 | 263 | 16 | 6 | 437 | 23 | 402 | 6.52e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29498.t1 | AT1G56400 | 33.102 | 432 | 263 | 13 | 2 | 419 | 9 | 428 | 2.83e-65 | 218 |
| MS.gene29498.t1 | AT3G62230 | 30.841 | 428 | 286 | 6 | 2 | 425 | 4 | 425 | 4.64e-60 | 204 |
| MS.gene29498.t1 | AT3G29830 | 32.494 | 437 | 267 | 14 | 6 | 427 | 8 | 431 | 4.58e-59 | 201 |
| MS.gene29498.t1 | AT3G29830 | 32.353 | 442 | 262 | 14 | 6 | 427 | 8 | 432 | 7.43e-59 | 201 |
| MS.gene29498.t1 | AT5G54820 | 30.839 | 441 | 279 | 11 | 2 | 425 | 3 | 434 | 1.63e-56 | 194 |
| MS.gene29498.t1 | AT1G56400 | 31.019 | 432 | 231 | 14 | 2 | 419 | 9 | 387 | 2.01e-50 | 177 |
| MS.gene29498.t1 | AT1G61330 | 26.068 | 468 | 288 | 20 | 11 | 457 | 15 | 445 | 1.68e-20 | 94.0 |
| MS.gene29498.t1 | AT2G17305 | 34.437 | 151 | 86 | 5 | 297 | 444 | 104 | 244 | 6.04e-18 | 84.3 |
| MS.gene29498.t1 | AT3G58860 | 23.666 | 431 | 291 | 11 | 5 | 425 | 6 | 408 | 4.74e-17 | 83.6 |
| MS.gene29498.t1 | AT3G58880 | 24.370 | 476 | 270 | 18 | 5 | 438 | 2 | 429 | 3.31e-16 | 81.3 |
| MS.gene29498.t1 | AT5G53635 | 23.457 | 486 | 277 | 15 | 9 | 463 | 3 | 424 | 3.62e-16 | 80.9 |
| MS.gene29498.t1 | AT1G69630 | 24.795 | 488 | 285 | 20 | 5 | 464 | 17 | 450 | 1.03e-15 | 79.7 |
| MS.gene29498.t1 | AT5G22730 | 23.395 | 483 | 303 | 15 | 6 | 465 | 28 | 466 | 2.23e-15 | 78.6 |
| MS.gene29498.t1 | AT5G22730 | 23.395 | 483 | 303 | 15 | 6 | 465 | 28 | 466 | 2.23e-15 | 78.6 |
| MS.gene29498.t1 | AT3G58920 | 23.047 | 512 | 297 | 15 | 5 | 464 | 1 | 467 | 2.35e-14 | 75.5 |
| MS.gene29498.t1 | AT3G58900 | 24.115 | 452 | 283 | 15 | 5 | 425 | 1 | 423 | 2.11e-13 | 72.4 |
| MS.gene29498.t1 | AT5G22670 | 24.045 | 445 | 272 | 11 | 6 | 427 | 11 | 412 | 3.68e-13 | 71.6 |
| MS.gene29498.t1 | AT1G66310 | 22.199 | 482 | 295 | 14 | 5 | 464 | 18 | 441 | 1.12e-12 | 70.1 |
| MS.gene29498.t1 | AT5G03100 | 27.206 | 272 | 160 | 8 | 2 | 270 | 5 | 241 | 2.25e-12 | 68.2 |
| MS.gene29498.t1 | AT5G03100 | 27.206 | 272 | 160 | 8 | 2 | 270 | 5 | 241 | 2.25e-12 | 68.2 |
| MS.gene29498.t1 | AT5G02930 | 23.750 | 400 | 254 | 10 | 1 | 378 | 23 | 393 | 2.57e-12 | 68.9 |
| MS.gene29498.t1 | AT1G80470 | 23.853 | 436 | 279 | 15 | 6 | 426 | 15 | 412 | 4.52e-12 | 68.2 |
| MS.gene29498.t1 | AT1G66290 | 22.727 | 484 | 297 | 19 | 2 | 464 | 25 | 452 | 8.39e-12 | 67.4 |
| MS.gene29498.t1 | AT1G13780 | 24.612 | 451 | 277 | 16 | 6 | 428 | 10 | 425 | 1.24e-11 | 67.0 |
| MS.gene29498.t1 | AT5G44980 | 24.944 | 449 | 259 | 20 | 6 | 425 | 4 | 403 | 1.89e-11 | 66.2 |
| MS.gene29498.t1 | AT5G44980 | 24.944 | 449 | 259 | 20 | 6 | 425 | 4 | 403 | 1.89e-11 | 66.2 |
| MS.gene29498.t1 | AT1G66300 | 20.359 | 501 | 291 | 15 | 2 | 464 | 25 | 455 | 3.52e-11 | 65.5 |
| MS.gene29498.t1 | AT5G22610 | 23.871 | 465 | 289 | 16 | 6 | 458 | 18 | 429 | 3.63e-11 | 65.5 |
| MS.gene29498.t1 | AT3G59240 | 23.416 | 363 | 245 | 11 | 6 | 354 | 8 | 351 | 4.27e-11 | 65.5 |
| MS.gene29498.t1 | AT1G13570 | 22.594 | 478 | 289 | 15 | 1 | 463 | 1 | 412 | 7.85e-11 | 64.3 |
| MS.gene29498.t1 | AT1G13570 | 22.594 | 478 | 289 | 15 | 1 | 463 | 1 | 412 | 7.85e-11 | 64.3 |
Find 73 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAAAAGCTTCAACTAATT+TGG | 0.114713 | 5.3:-64743586 | MS.gene29498:CDS |
| TAATCGAAAACCTTTAAATT+TGG | 0.121151 | 5.3:+64745248 | None:intergenic |
| GTTCTCACAGCTTCCTTAAA+AGG | 0.147884 | 5.3:+64745908 | None:intergenic |
| TATCCTTAAGGGAGAATATT+TGG | 0.162179 | 5.3:-64745333 | MS.gene29498:CDS |
| AATTAATACCCCAAATTTAA+AGG | 0.179731 | 5.3:-64745258 | MS.gene29498:CDS |
| TAATGACCGTTTGTAGTTAT+TGG | 0.199391 | 5.3:-64745085 | MS.gene29498:CDS |
| TCTAAAGAAGGTTGAGATTA+AGG | 0.199622 | 5.3:-64743772 | MS.gene29498:CDS |
| TCCAAATTAGTTGAAGCTTT+TGG | 0.217936 | 5.3:+64743585 | None:intergenic |
| AATCGAAAACCTTTAAATTT+GGG | 0.226809 | 5.3:+64745249 | None:intergenic |
| TTCACTCAAAGAAATTTCTT+TGG | 0.256696 | 5.3:-64745456 | MS.gene29498:CDS |
| CTTCAATCCTTTCTAAAGAT+TGG | 0.259734 | 5.3:-64745886 | MS.gene29498:CDS |
| ATCCTTAAGGGAGAATATTT+GGG | 0.293885 | 5.3:-64745332 | MS.gene29498:CDS |
| CGTTTGTAGTTATTGGCTTC+AGG | 0.316982 | 5.3:-64745078 | MS.gene29498:intron |
| ATTGATGCTCATCTTTCTTA+AGG | 0.321601 | 5.3:+64743689 | None:intergenic |
| TTCAATCCTTTCTAAAGATT+GGG | 0.346578 | 5.3:-64745885 | MS.gene29498:CDS |
| ACCCCAAATATTCTCCCTTA+AGG | 0.356649 | 5.3:+64745330 | None:intergenic |
| CTAAAGAAGGTTGAGATTAA+GGG | 0.362591 | 5.3:-64743771 | MS.gene29498:CDS |
| AAGAAATGGAGTGAAAGATT+TGG | 0.363394 | 5.3:-64745639 | MS.gene29498:CDS |
| TCACTCAAAGAAATTTCTTT+GGG | 0.365457 | 5.3:-64745455 | MS.gene29498:CDS |
| ATGTCCTCACAAAATACTTT+AGG | 0.372336 | 5.3:+64745686 | None:intergenic |
| ATTGTGAGATGCTCTAGGTT+AGG | 0.393149 | 5.3:+64744662 | None:intergenic |
| ACTCTCCAACATTTCACAAT+TGG | 0.398161 | 5.3:+64745391 | None:intergenic |
| TATAAGTGCTGGAGTTTGAA+TGG | 0.399073 | 5.3:-64745359 | MS.gene29498:CDS |
| CAATTCCCTCAAACTCAAAC+TGG | 0.400168 | 5.3:+64744705 | None:intergenic |
| TTGCACCAGTTTGAGTTTGA+GGG | 0.415657 | 5.3:-64744710 | MS.gene29498:CDS |
| TTTGCACCAGTTTGAGTTTG+AGG | 0.415695 | 5.3:-64744711 | MS.gene29498:CDS |
| CCTTCTCCCAATCTTTAGAA+AGG | 0.422998 | 5.3:+64745879 | None:intergenic |
| ATTACATTCGCTATAAGAAA+TGG | 0.427802 | 5.3:-64745653 | MS.gene29498:CDS |
| TAGATTTCACTTCTCCATCA+TGG | 0.434803 | 5.3:-64745613 | MS.gene29498:CDS |
| TCACGACGGGCAGTGACATT+CGG | 0.436826 | 5.3:+64743633 | None:intergenic |
| TTTAACCAATTGTGAAATGT+TGG | 0.437065 | 5.3:-64745396 | MS.gene29498:CDS |
| TCATGGGAGTTAACATTGAC+TGG | 0.438728 | 5.3:-64745979 | MS.gene29498:CDS |
| TTACTTACTTCCTCCTTCGT+GGG | 0.445648 | 5.3:-64743716 | MS.gene29498:CDS |
| TTCTCACAGCTTCCTTAAAA+GGG | 0.446194 | 5.3:+64745909 | None:intergenic |
| CTTACTTACTTCCTCCTTCG+TGG | 0.447019 | 5.3:-64743717 | MS.gene29498:CDS |
| CGATATTCAATCACCTGCCT+TGG | 0.447343 | 5.3:-64745204 | MS.gene29498:CDS |
| AGTTATGTTTATGAGTATAG+TGG | 0.449164 | 5.3:-64745539 | MS.gene29498:CDS |
| GGTTGAGATTAAGGGCTTCA+AGG | 0.458222 | 5.3:-64743763 | MS.gene29498:CDS |
| AACTTATCTTTGATCCATGA+TGG | 0.470021 | 5.3:+64745599 | None:intergenic |
| TTGTGAGATGCTCTAGGTTA+GGG | 0.470412 | 5.3:+64744663 | None:intergenic |
| AGCTTCCTTAAAAGGGAGAT+AGG | 0.475195 | 5.3:+64745916 | None:intergenic |
| ATCGAAAACCTTTAAATTTG+GGG | 0.491211 | 5.3:+64745250 | None:intergenic |
| AGTAAATATAAGTGCTATTG+AGG | 0.494633 | 5.3:-64745423 | MS.gene29498:CDS |
| CACGAAGGAGGAAGTAAGTA+AGG | 0.503956 | 5.3:+64743718 | None:intergenic |
| CTACAAACGGTCATTACTCT+AGG | 0.520706 | 5.3:+64745092 | None:intergenic |
| TCAATCACCTGCCTTGGATG+AGG | 0.521562 | 5.3:-64745198 | MS.gene29498:CDS |
| TTTCAATTGTGAGATGCTCT+AGG | 0.524583 | 5.3:+64744657 | None:intergenic |
| GTTGAGATTAAGGGCTTCAA+GGG | 0.530278 | 5.3:-64743762 | MS.gene29498:CDS |
| TGTGAAATCACATCTAAAGA+AGG | 0.534472 | 5.3:-64743784 | MS.gene29498:CDS |
| CTGAAGCCAATAACTACAAA+CGG | 0.537936 | 5.3:+64745079 | None:intergenic |
| AACATAACTATCCAAATCAT+CGG | 0.542752 | 5.3:+64745553 | None:intergenic |
| TTACTTCCTCCTTCGTGGGG+AGG | 0.552209 | 5.3:-64743712 | MS.gene29498:CDS |
| TCTCACAATTGAAATTGTTG+AGG | 0.560750 | 5.3:-64744648 | MS.gene29498:CDS |
| GTCTTTGACATCCATGCTCA+AGG | 0.567591 | 5.3:+64745159 | None:intergenic |
| TCTGGGATAAAAGGGAACAC+TGG | 0.567847 | 5.3:+64743843 | None:intergenic |
| AGATCTAGCTATTTCACGAC+GGG | 0.575598 | 5.3:+64743620 | None:intergenic |
| TTCAAGATTAACCTCATCCA+AGG | 0.580398 | 5.3:+64745187 | None:intergenic |
| ACGGTCATTACTCTAGGTGA+AGG | 0.581705 | 5.3:+64745098 | None:intergenic |
| TCCTTAAGGGAGAATATTTG+GGG | 0.581736 | 5.3:-64745331 | MS.gene29498:CDS |
| AGATTAACCTCATCCAAGGC+AGG | 0.589766 | 5.3:+64745191 | None:intergenic |
| TAAAGATGACGTGAAAGAAG+AGG | 0.597136 | 5.3:-64743661 | MS.gene29498:CDS |
| TTAAGGCCTCCCCACGAAGG+AGG | 0.600750 | 5.3:+64743706 | None:intergenic |
| TCTTTGAAATTGTATTCATG+CGG | 0.602157 | 5.3:-64745509 | MS.gene29498:CDS |
| TACTTACTTCCTCCTTCGTG+GGG | 0.608588 | 5.3:-64743715 | MS.gene29498:CDS |
| TGAGCATGAACAATTTCATG+AGG | 0.614393 | 5.3:+64745797 | None:intergenic |
| CCTTTCTAAAGATTGGGAGA+AGG | 0.622716 | 5.3:-64745879 | MS.gene29498:CDS |
| CGGTCATTACTCTAGGTGAA+GGG | 0.623193 | 5.3:+64745099 | None:intergenic |
| ACGTACACGTCGTAACATGA+AGG | 0.624322 | 5.3:-64744759 | MS.gene29498:CDS |
| GAAAAGAAAATTTATGCTCG+AGG | 0.624574 | 5.3:-64744788 | MS.gene29498:intron |
| TTCTTAAGGCCTCCCCACGA+AGG | 0.625731 | 5.3:+64743703 | None:intergenic |
| GAGCATGGATGTCAAAGACA+TGG | 0.651533 | 5.3:-64745155 | MS.gene29498:CDS |
| GATGACGTGAAAGAAGAGGT+TGG | 0.660885 | 5.3:-64743657 | MS.gene29498:CDS |
| AAGATCTAGCTATTTCACGA+CGG | 0.693257 | 5.3:+64743619 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATACATAACAATTAAT+TGG | + | chr5.3:64744523-64744542 | None:intergenic | 10.0% |
| !! | CAAAATATATAAATTAACTT+AGG | - | chr5.3:64745223-64745242 | MS.gene29498:CDS | 10.0% |
| !! | TTAAATCTATATAACATATA+CGG | + | chr5.3:64744977-64744996 | None:intergenic | 10.0% |
| !!! | ATAGATTTAATTTTTTTTAG+AGG | - | chr5.3:64744987-64745006 | MS.gene29498:intron | 10.0% |
| !!! | TAGATTTAATTTTTTTTAGA+GGG | - | chr5.3:64744988-64745007 | MS.gene29498:intron | 10.0% |
| !! | TAATTTGAATTCATTAATGT+CGG | - | chr5.3:64745028-64745047 | MS.gene29498:intron | 15.0% |
| !!! | AAAGTTACATTGTTTAATTT+CGG | - | chr5.3:64745174-64745193 | MS.gene29498:CDS | 15.0% |
| !!! | AACATTTTTTTATAATTCGA+AGG | - | chr5.3:64745554-64745573 | MS.gene29498:CDS | 15.0% |
| !!! | ATGTCTTAATTTTTTTCAAA+AGG | + | chr5.3:64745647-64745666 | None:intergenic | 15.0% |
| !! | AAAAAATGGATAGAAAATCA+TGG | - | chr5.3:64743797-64743816 | MS.gene29498:CDS | 20.0% |
| !! | AATCGAAAACCTTTAAATTT+GGG | + | chr5.3:64744300-64744319 | None:intergenic | 20.0% |
| !! | AATTAATACCCCAAATTTAA+AGG | - | chr5.3:64744288-64744307 | MS.gene29498:intron | 20.0% |
| !! | TAAAGACAATTCTTAAGTTA+AGG | + | chr5.3:64744551-64744570 | None:intergenic | 20.0% |
| !! | TAATCGAAAACCTTTAAATT+TGG | + | chr5.3:64744301-64744320 | None:intergenic | 20.0% |
| !! | TATGTTCCATATAAATTTAG+TGG | + | chr5.3:64745387-64745406 | None:intergenic | 20.0% |
| !! | TGAAAAAATTGGTTATCAAT+AGG | - | chr5.3:64744239-64744258 | MS.gene29498:intron | 20.0% |
| !! | TTGTAAAAAATGACAACATA+AGG | - | chr5.3:64745302-64745321 | MS.gene29498:CDS | 20.0% |
| !!! | AATATTTTTCTGGGATAAAA+GGG | + | chr5.3:64745714-64745733 | None:intergenic | 20.0% |
| !!! | GTTTAAATTTTTATAAGTGC+TGG | - | chr5.3:64744176-64744195 | MS.gene29498:intron | 20.0% |
| !!! | TATCAATCCAATATTTTTCT+GGG | + | chr5.3:64745723-64745742 | None:intergenic | 20.0% |
| !!! | TTAAAGGTTTTCGATTATAA+CGG | - | chr5.3:64744304-64744323 | MS.gene29498:intron | 20.0% |
| !!! | TTTTGGATTTCATGAAAAAA+TGG | - | chr5.3:64743783-64743802 | MS.gene29498:CDS | 20.0% |
| ! | AACATAACTATCCAAATCAT+CGG | + | chr5.3:64743996-64744015 | None:intergenic | 25.0% |
| ! | AGTTATGTTTATGAGTATAG+TGG | - | chr5.3:64744007-64744026 | MS.gene29498:intron | 25.0% |
| ! | ATCGAAAACCTTTAAATTTG+GGG | + | chr5.3:64744299-64744318 | None:intergenic | 25.0% |
| ! | ATTACATTCGCTATAAGAAA+TGG | - | chr5.3:64743893-64743912 | MS.gene29498:intron | 25.0% |
| ! | TCACTCAAAGAAATTTCTTT+GGG | - | chr5.3:64744091-64744110 | MS.gene29498:intron | 25.0% |
| ! | TGAGTTCCACTAAATTTATA+TGG | - | chr5.3:64745378-64745397 | MS.gene29498:CDS | 25.0% |
| ! | TTCACTCAAAGAAATTTCTT+TGG | - | chr5.3:64744090-64744109 | MS.gene29498:intron | 25.0% |
| ! | TTTAACCAATTGTGAAATGT+TGG | - | chr5.3:64744150-64744169 | MS.gene29498:intron | 25.0% |
| !! | AGTAAATATAAGTGCTATTG+AGG | - | chr5.3:64744123-64744142 | MS.gene29498:intron | 25.0% |
| !! | ATATTTGGGGTTGAAAAAAT+TGG | - | chr5.3:64744228-64744247 | MS.gene29498:intron | 25.0% |
| !! | CTTTTATCCCAGAAAAATAT+TGG | - | chr5.3:64745713-64745732 | MS.gene29498:CDS | 25.0% |
| !! | GTATCAATCCAATATTTTTC+TGG | + | chr5.3:64745724-64745743 | None:intergenic | 25.0% |
| !! | GTTTTCTTTCTATGATTTTG+TGG | - | chr5.3:64743967-64743986 | MS.gene29498:intron | 25.0% |
| !! | TAAAGGTTTTCGATTATAAC+GGG | - | chr5.3:64744305-64744324 | MS.gene29498:intron | 25.0% |
| !! | TTCAATCCTTTCTAAAGATT+GGG | - | chr5.3:64743661-64743680 | MS.gene29498:CDS | 25.0% |
| !!! | CAATATTTTTCTGGGATAAA+AGG | + | chr5.3:64745715-64745734 | None:intergenic | 25.0% |
| !!! | TCTTTGAAATTGTATTCATG+CGG | - | chr5.3:64744037-64744056 | MS.gene29498:intron | 25.0% |
| !!! | TTGAATGGTTTTATCCTTAA+GGG | - | chr5.3:64744202-64744221 | MS.gene29498:intron | 25.0% |
| !!! | TTTGAATGGTTTTATCCTTA+AGG | - | chr5.3:64744201-64744220 | MS.gene29498:intron | 25.0% |
| AACTTATCTTTGATCCATGA+TGG | + | chr5.3:64743950-64743969 | None:intergenic | 30.0% | |
| AAGAAATGGAGTGAAAGATT+TGG | - | chr5.3:64743907-64743926 | MS.gene29498:intron | 30.0% | |
| AATATACTTAAAGTCGAAGC+TGG | + | chr5.3:64744608-64744627 | None:intergenic | 30.0% | |
| ATCCTTAAGGGAGAATATTT+GGG | - | chr5.3:64744214-64744233 | MS.gene29498:intron | 30.0% | |
| ATGTCCTCACAAAATACTTT+AGG | + | chr5.3:64743863-64743882 | None:intergenic | 30.0% | |
| ATTGATGCTCATCTTTCTTA+AGG | + | chr5.3:64745860-64745879 | None:intergenic | 30.0% | |
| CTAAAGAAGGTTGAGATTAA+GGG | - | chr5.3:64745775-64745794 | MS.gene29498:CDS | 30.0% | |
| GAAAAGAAAATTTATGCTCG+AGG | - | chr5.3:64744758-64744777 | MS.gene29498:CDS | 30.0% | |
| TAATGACCGTTTGTAGTTAT+TGG | - | chr5.3:64744461-64744480 | MS.gene29498:intron | 30.0% | |
| TATATGGAACATACGTAACT+TGG | - | chr5.3:64745394-64745413 | MS.gene29498:CDS | 30.0% | |
| TATCCTTAAGGGAGAATATT+TGG | - | chr5.3:64744213-64744232 | MS.gene29498:intron | 30.0% | |
| TCCAAAAGCTTCAACTAATT+TGG | - | chr5.3:64745960-64745979 | MS.gene29498:CDS | 30.0% | |
| TCTAAAGAAGGTTGAGATTA+AGG | - | chr5.3:64745774-64745793 | MS.gene29498:CDS | 30.0% | |
| TCTCACAATTGAAATTGTTG+AGG | - | chr5.3:64744898-64744917 | MS.gene29498:intron | 30.0% | |
| TGTGAAATCACATCTAAAGA+AGG | - | chr5.3:64745762-64745781 | MS.gene29498:CDS | 30.0% | |
| ! | CTTCAATCCTTTCTAAAGAT+TGG | - | chr5.3:64743660-64743679 | MS.gene29498:CDS | 30.0% |
| ! | TCCAAATTAGTTGAAGCTTT+TGG | + | chr5.3:64745964-64745983 | None:intergenic | 30.0% |
| ! | TGCTCAAAGAATGACATTTT+TGG | - | chr5.3:64743766-64743785 | MS.gene29498:CDS | 30.0% |
| ACTCTCCAACATTTCACAAT+TGG | + | chr5.3:64744158-64744177 | None:intergenic | 35.0% | |
| CTGAAGCCAATAACTACAAA+CGG | + | chr5.3:64744470-64744489 | None:intergenic | 35.0% | |
| TAAAGATGACGTGAAAGAAG+AGG | - | chr5.3:64745885-64745904 | MS.gene29498:CDS | 35.0% | |
| TAGATTTCACTTCTCCATCA+TGG | - | chr5.3:64743933-64743952 | MS.gene29498:intron | 35.0% | |
| TCCTTAAGGGAGAATATTTG+GGG | - | chr5.3:64744215-64744234 | MS.gene29498:intron | 35.0% | |
| TGAGCATGAACAATTTCATG+AGG | + | chr5.3:64743752-64743771 | None:intergenic | 35.0% | |
| TTCAAGATTAACCTCATCCA+AGG | + | chr5.3:64744362-64744381 | None:intergenic | 35.0% | |
| TTCTCACAGCTTCCTTAAAA+GGG | + | chr5.3:64743640-64743659 | None:intergenic | 35.0% | |
| TTTCAATTGTGAGATGCTCT+AGG | + | chr5.3:64744892-64744911 | None:intergenic | 35.0% | |
| ! | AAGATCTAGCTATTTCACGA+CGG | + | chr5.3:64745930-64745949 | None:intergenic | 35.0% |
| ! | CTTGAATTTTTCCTTGAGCA+TGG | - | chr5.3:64744376-64744395 | MS.gene29498:intron | 35.0% |
| !! | AGCTCCTAAAGTATTTTGTG+AGG | - | chr5.3:64743856-64743875 | MS.gene29498:intron | 35.0% |
| !! | TATAAGTGCTGGAGTTTGAA+TGG | - | chr5.3:64744187-64744206 | MS.gene29498:intron | 35.0% |
| ACCCCAAATATTCTCCCTTA+AGG | + | chr5.3:64744219-64744238 | None:intergenic | 40.0% | |
| AGAGTGTGTTGAAATGTGTG+TGG | - | chr5.3:64745447-64745466 | MS.gene29498:CDS | 40.0% | |
| AGCTTCCTTAAAAGGGAGAT+AGG | + | chr5.3:64743633-64743652 | None:intergenic | 40.0% | |
| ATGGAACATACGTAACTTGG+TGG | - | chr5.3:64745397-64745416 | MS.gene29498:CDS | 40.0% | |
| CAATTCCCTCAAACTCAAAC+TGG | + | chr5.3:64744844-64744863 | None:intergenic | 40.0% | |
| CTACAAACGGTCATTACTCT+AGG | + | chr5.3:64744457-64744476 | None:intergenic | 40.0% | |
| GTTCTCACAGCTTCCTTAAA+AGG | + | chr5.3:64743641-64743660 | None:intergenic | 40.0% | |
| GTTGAGATTAAGGGCTTCAA+GGG | - | chr5.3:64745784-64745803 | MS.gene29498:CDS | 40.0% | |
| TGGAACATACGTAACTTGGT+GGG | - | chr5.3:64745398-64745417 | MS.gene29498:CDS | 40.0% | |
| TTACTTACTTCCTCCTTCGT+GGG | - | chr5.3:64745830-64745849 | MS.gene29498:CDS | 40.0% | |
| ! | AGATCTAGCTATTTCACGAC+GGG | + | chr5.3:64745929-64745948 | None:intergenic | 40.0% |
| ! | ATTGTGAGATGCTCTAGGTT+AGG | + | chr5.3:64744887-64744906 | None:intergenic | 40.0% |
| ! | CCTTCTCCCAATCTTTAGAA+AGG | + | chr5.3:64743670-64743689 | None:intergenic | 40.0% |
| ! | CCTTTCTAAAGATTGGGAGA+AGG | - | chr5.3:64743667-64743686 | MS.gene29498:CDS | 40.0% |
| ! | CGGTTTTTCTGCTAGTGAAA+TGG | - | chr5.3:64744057-64744076 | MS.gene29498:intron | 40.0% |
| ! | TGTCTCCTATCTCCCTTTTA+AGG | - | chr5.3:64743625-64743644 | MS.gene29498:CDS | 40.0% |
| ! | TTGCACCAGTTTGAGTTTGA+GGG | - | chr5.3:64744836-64744855 | MS.gene29498:intron | 40.0% |
| ! | TTGTGAGATGCTCTAGGTTA+GGG | + | chr5.3:64744886-64744905 | None:intergenic | 40.0% |
| ! | TTTGCACCAGTTTGAGTTTG+AGG | - | chr5.3:64744835-64744854 | MS.gene29498:intron | 40.0% |
| ! | TTTTGTGGCTTCCGATGATT+TGG | - | chr5.3:64743982-64744001 | MS.gene29498:intron | 40.0% |
| !! | CGTTTGTAGTTATTGGCTTC+AGG | - | chr5.3:64744468-64744487 | MS.gene29498:intron | 40.0% |
| ACGGTCATTACTCTAGGTGA+AGG | + | chr5.3:64744451-64744470 | None:intergenic | 45.0% | |
| ACGTACACGTCGTAACATGA+AGG | - | chr5.3:64744787-64744806 | MS.gene29498:intron | 45.0% | |
| AGATTAACCTCATCCAAGGC+AGG | + | chr5.3:64744358-64744377 | None:intergenic | 45.0% | |
| CACGAAGGAGGAAGTAAGTA+AGG | + | chr5.3:64745831-64745850 | None:intergenic | 45.0% | |
| CGATATTCAATCACCTGCCT+TGG | - | chr5.3:64744342-64744361 | MS.gene29498:intron | 45.0% | |
| CGGTCATTACTCTAGGTGAA+GGG | + | chr5.3:64744450-64744469 | None:intergenic | 45.0% | |
| CTTACTTACTTCCTCCTTCG+TGG | - | chr5.3:64745829-64745848 | MS.gene29498:CDS | 45.0% | |
| GAGCATGGATGTCAAAGACA+TGG | - | chr5.3:64744391-64744410 | MS.gene29498:intron | 45.0% | |
| GATGACGTGAAAGAAGAGGT+TGG | - | chr5.3:64745889-64745908 | MS.gene29498:CDS | 45.0% | |
| GGTTGAGATTAAGGGCTTCA+AGG | - | chr5.3:64745783-64745802 | MS.gene29498:CDS | 45.0% | |
| GTCTTTGACATCCATGCTCA+AGG | + | chr5.3:64744390-64744409 | None:intergenic | 45.0% | |
| TACTTACTTCCTCCTTCGTG+GGG | - | chr5.3:64745831-64745850 | MS.gene29498:CDS | 45.0% | |
| TTGAAATGTGTGTGGACGTG+TGG | - | chr5.3:64745455-64745474 | MS.gene29498:CDS | 45.0% | |
| ! | CGTAACTTGGTGGGACTTAA+AGG | - | chr5.3:64745407-64745426 | MS.gene29498:CDS | 45.0% |
| ! | TCTGGGATAAAAGGGAACAC+TGG | + | chr5.3:64745706-64745725 | None:intergenic | 45.0% |
| !!! | TAATGATAAATTATTTTTTT+CGG | - | chr5.3:64744685-64744704 | MS.gene29498:CDS | 5.0% |
| !!! | TTTTTTATTATCTTTAATAA+CGG | - | chr5.3:64744721-64744740 | MS.gene29498:CDS | 5.0% |
| TCAATCACCTGCCTTGGATG+AGG | - | chr5.3:64744348-64744367 | MS.gene29498:intron | 50.0% | |
| GTGTGTGGACGTGTGGTAGA+GGG | - | chr5.3:64745462-64745481 | MS.gene29498:CDS | 55.0% | |
| TCACGACGGGCAGTGACATT+CGG | + | chr5.3:64745916-64745935 | None:intergenic | 55.0% | |
| TGTGTGTGGACGTGTGGTAG+AGG | - | chr5.3:64745461-64745480 | MS.gene29498:CDS | 55.0% | |
| TTACTTCCTCCTTCGTGGGG+AGG | - | chr5.3:64745834-64745853 | MS.gene29498:CDS | 55.0% | |
| TTCTTAAGGCCTCCCCACGA+AGG | + | chr5.3:64745846-64745865 | None:intergenic | 55.0% | |
| TTAAGGCCTCCCCACGAAGG+AGG | + | chr5.3:64745843-64745862 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 64743569 | 64745999 | 64743569 | ID=MS.gene29498 |
| chr5.3 | mRNA | 64743569 | 64745999 | 64743569 | ID=MS.gene29498.t1;Parent=MS.gene29498 |
| chr5.3 | exon | 64745079 | 64745999 | 64745079 | ID=MS.gene29498.t1.exon1;Parent=MS.gene29498.t1 |
| chr5.3 | CDS | 64745079 | 64745999 | 64745079 | ID=cds.MS.gene29498.t1;Parent=MS.gene29498.t1 |
| chr5.3 | exon | 64744634 | 64744804 | 64744634 | ID=MS.gene29498.t1.exon2;Parent=MS.gene29498.t1 |
| chr5.3 | CDS | 64744634 | 64744804 | 64744634 | ID=cds.MS.gene29498.t1;Parent=MS.gene29498.t1 |
| chr5.3 | exon | 64743569 | 64743874 | 64743569 | ID=MS.gene29498.t1.exon3;Parent=MS.gene29498.t1 |
| chr5.3 | CDS | 64743569 | 64743874 | 64743569 | ID=cds.MS.gene29498.t1;Parent=MS.gene29498.t1 |
| Gene Sequence |
| Protein sequence |
