Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene040413.t1 | XP_004490493.1 | 64.5 | 282 | 98 | 1 | 1 | 280 | 1 | 282 | 2.80E-97 | 365.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene040413.t1 | Q9C7X8 | 32.8 | 274 | 173 | 4 | 6 | 276 | 13 | 278 | 6.0e-32 | 139.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene040413.t1 | A0A1S2XMC6 | 64.5 | 282 | 98 | 1 | 1 | 280 | 1 | 282 | 2.0e-97 | 365.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene040413.t1 | MTR_5g080150 | 62.411 | 282 | 100 | 4 | 1 | 280 | 1 | 278 | 4.01e-113 | 331 |
MS.gene040413.t1 | MTR_2g048140 | 43.431 | 274 | 148 | 5 | 4 | 276 | 5 | 272 | 1.84e-59 | 196 |
MS.gene040413.t1 | MTR_1g090907 | 42.701 | 274 | 150 | 5 | 4 | 276 | 5 | 272 | 4.87e-55 | 184 |
MS.gene040413.t1 | MTR_3g448340 | 40.071 | 282 | 154 | 6 | 1 | 277 | 1 | 272 | 2.13e-52 | 177 |
MS.gene040413.t1 | MTR_1g090903 | 40.625 | 224 | 127 | 5 | 31 | 252 | 30 | 249 | 9.92e-45 | 156 |
MS.gene040413.t1 | MTR_3g049530 | 35.971 | 278 | 117 | 7 | 1 | 276 | 1 | 219 | 1.19e-33 | 127 |
MS.gene040413.t1 | MTR_5g080110 | 62.687 | 67 | 25 | 0 | 1 | 67 | 1 | 67 | 2.81e-21 | 85.5 |
MS.gene040413.t1 | MTR_5g066900 | 47.561 | 82 | 28 | 1 | 19 | 100 | 19 | 85 | 6.27e-16 | 71.6 |
MS.gene040413.t1 | MTR_5g080160 | 64.912 | 57 | 19 | 1 | 1 | 56 | 1 | 57 | 6.53e-15 | 71.2 |
MS.gene040413.t1 | MTR_5g038430 | 26.154 | 260 | 129 | 11 | 2 | 248 | 92 | 301 | 1.68e-13 | 70.5 |
MS.gene040413.t1 | MTR_1g071060 | 38.889 | 90 | 54 | 1 | 38 | 127 | 7 | 95 | 3.77e-12 | 61.6 |
MS.gene040413.t1 | MTR_8g015830 | 27.562 | 283 | 162 | 10 | 6 | 272 | 8 | 263 | 2.66e-11 | 63.9 |
MS.gene040413.t1 | MTR_8g015830 | 27.562 | 283 | 162 | 10 | 6 | 272 | 8 | 263 | 2.94e-11 | 63.9 |
MS.gene040413.t1 | MTR_1g013630 | 26.291 | 213 | 137 | 5 | 1 | 208 | 34 | 231 | 3.52e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene040413.t1 | AT1G56400 | 32.374 | 278 | 177 | 4 | 2 | 276 | 9 | 278 | 6.56e-37 | 137 |
MS.gene040413.t1 | AT3G29830 | 34.397 | 282 | 160 | 10 | 6 | 277 | 8 | 274 | 6.58e-33 | 125 |
MS.gene040413.t1 | AT3G29830 | 34.397 | 282 | 160 | 10 | 6 | 277 | 8 | 274 | 6.72e-33 | 125 |
MS.gene040413.t1 | AT5G54820 | 31.930 | 285 | 173 | 8 | 2 | 277 | 3 | 275 | 1.20e-29 | 117 |
MS.gene040413.t1 | AT1G56400 | 29.964 | 277 | 142 | 5 | 3 | 276 | 10 | 237 | 2.22e-25 | 104 |
MS.gene040413.t1 | AT3G62230 | 29.137 | 278 | 190 | 4 | 2 | 276 | 4 | 277 | 3.68e-25 | 104 |
MS.gene040413.t1 | AT3G59000 | 27.830 | 212 | 140 | 4 | 5 | 204 | 1 | 211 | 1.35e-14 | 73.2 |
MS.gene040413.t1 | AT3G59000 | 32.308 | 130 | 87 | 1 | 5 | 134 | 1 | 129 | 2.33e-14 | 73.2 |
MS.gene040413.t1 | AT3G58860 | 26.953 | 256 | 155 | 7 | 5 | 250 | 6 | 239 | 1.46e-12 | 67.8 |
MS.gene040413.t1 | AT3G52680 | 28.235 | 255 | 154 | 9 | 6 | 253 | 21 | 253 | 2.74e-12 | 66.6 |
MS.gene040413.t1 | AT3G58880 | 29.286 | 140 | 96 | 2 | 5 | 142 | 2 | 140 | 5.43e-12 | 65.9 |
MS.gene040413.t1 | AT3G52680 | 28.235 | 255 | 154 | 9 | 6 | 253 | 21 | 253 | 8.72e-12 | 65.5 |
MS.gene040413.t1 | AT4G13960 | 26.482 | 253 | 157 | 8 | 5 | 250 | 1 | 231 | 1.30e-11 | 65.1 |
MS.gene040413.t1 | AT4G13960 | 26.482 | 253 | 157 | 8 | 5 | 250 | 1 | 231 | 1.30e-11 | 65.1 |
MS.gene040413.t1 | AT3G58900 | 32.203 | 118 | 79 | 1 | 5 | 122 | 1 | 117 | 2.37e-11 | 64.3 |
MS.gene040413.t1 | AT3G58900 | 32.203 | 118 | 79 | 1 | 5 | 122 | 1 | 117 | 2.84e-11 | 63.2 |
MS.gene040413.t1 | AT3G58900 | 32.203 | 118 | 79 | 1 | 5 | 122 | 1 | 117 | 3.22e-11 | 63.2 |
MS.gene040413.t1 | AT3G58900 | 32.203 | 118 | 79 | 1 | 5 | 122 | 1 | 117 | 3.22e-11 | 63.2 |
MS.gene040413.t1 | AT5G41840 | 24.286 | 210 | 149 | 4 | 1 | 206 | 9 | 212 | 7.70e-11 | 62.8 |
MS.gene040413.t1 | AT1G69630 | 25.962 | 208 | 124 | 6 | 5 | 206 | 17 | 200 | 7.99e-11 | 62.4 |
Find 32 sgRNAs with CRISPR-Local
Find 47 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTTGAGCATCAACAATTTC+AGG | 0.243731 | 7.3:+71397437 | None:intergenic |
ATGACCTGATTAAACATTTC+AGG | 0.246755 | 7.3:+71397329 | None:intergenic |
CCTAGTTATGTTTATGACTA+TGG | 0.249350 | 7.3:-71397185 | MS.gene040413:CDS |
GAAAGACAAATGGGAGAAAA+TGG | 0.250720 | 7.3:+71397568 | None:intergenic |
TTCCCTCAAAGAAATATCTT+TGG | 0.270717 | 7.3:-71397099 | MS.gene040413:CDS |
GAGAAATGGAGTTAAGTATT+TGG | 0.273380 | 7.3:-71397282 | MS.gene040413:CDS |
AGTGAAGCTATGTGCTATTA+AGG | 0.312329 | 7.3:-71397066 | MS.gene040413:CDS |
CCACTTCTTTGAAAGACAAA+TGG | 0.342556 | 7.3:+71397558 | None:intergenic |
ATGGTTGATAACAATGAATT+AGG | 0.345686 | 7.3:+71397587 | None:intergenic |
AGTGCCTGAAATGTTTAATC+AGG | 0.350234 | 7.3:-71397333 | MS.gene040413:CDS |
CCATGGGAGTAAACATTGAT+AGG | 0.355905 | 7.3:-71397622 | MS.gene040413:CDS |
TCCCTCAAAGAAATATCTTT+GGG | 0.372400 | 7.3:-71397098 | MS.gene040413:CDS |
TTCCCTTGAGCATGGATGTC+AGG | 0.403881 | 7.3:-71396802 | None:intergenic |
ACCCAAAGATATTTCTTTGA+GGG | 0.417663 | 7.3:+71397097 | None:intergenic |
AGTTCATTGAACTCTATGTT+TGG | 0.432595 | 7.3:+71397485 | None:intergenic |
CACTTCTTTGAAAGACAAAT+GGG | 0.434762 | 7.3:+71397559 | None:intergenic |
GTTTGAGTTTGTTTAAGTGC+TGG | 0.444803 | 7.3:-71397013 | MS.gene040413:CDS |
ATGTGCTATTAAGGCACTAT+TGG | 0.446523 | 7.3:-71397057 | MS.gene040413:CDS |
AAACTATCTTTGATCCGAGT+TGG | 0.455902 | 7.3:+71397242 | None:intergenic |
ATTGGCCAATTGTGAAAAGT+TGG | 0.461528 | 7.3:-71397039 | MS.gene040413:CDS |
CCATTTGTCTTTCAAAGAAG+TGG | 0.465077 | 7.3:-71397558 | MS.gene040413:CDS |
CCATAGTCATAAACATAACT+AGG | 0.481893 | 7.3:+71397185 | None:intergenic |
GTTGCGTCAGCTGTGAGAAA+TGG | 0.489194 | 7.3:-71397296 | MS.gene040413:CDS |
TGATATTCAATCAACTGCAT+TGG | 0.494222 | 7.3:-71396844 | MS.gene040413:CDS |
AACCCAAAGATATTTCTTTG+AGG | 0.497703 | 7.3:+71397096 | None:intergenic |
AAGTGCTGGAATTCAGATGC+TGG | 0.524277 | 7.3:-71396999 | MS.gene040413:CDS |
CCTATCAATGTTTACTCCCA+TGG | 0.527132 | 7.3:+71397622 | None:intergenic |
TGACCTGACATCCATGCTCA+AGG | 0.552492 | 7.3:+71396799 | None:intergenic |
AGTTAATGCCCCAAATCTGA+AGG | 0.566076 | 7.3:-71396904 | MS.gene040413:CDS |
GACCTGACATCCATGCTCAA+GGG | 0.599854 | 7.3:+71396800 | None:intergenic |
TTGATTTCACTCATCCAACT+CGG | 0.602313 | 7.3:-71397256 | MS.gene040413:CDS |
TTGGGTGAACATTAGCAAAG+TGG | 0.666162 | 7.3:-71397510 | MS.gene040413:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATAAAAACCTTCAGATTT+GGG | + | chr7.3:71397531-71397550 | None:intergenic | 20.0% |
!! | TAAATAAAAACCTTCAGATT+TGG | + | chr7.3:71397532-71397551 | None:intergenic | 20.0% |
!! | TTCTATTCTCTCAAAAAATT+GGG | - | chr7.3:71396895-71396914 | MS.gene040413:CDS | 20.0% |
!!! | TGAAGGTTTTTATTTATCAA+GGG | - | chr7.3:71397536-71397555 | MS.gene040413:CDS | 20.0% |
! | AATAAAAACCTTCAGATTTG+GGG | + | chr7.3:71397530-71397549 | None:intergenic | 25.0% |
! | CTTCTATTCTCTCAAAAAAT+TGG | - | chr7.3:71396894-71396913 | MS.gene040413:CDS | 25.0% |
!! | ATATTCTGGGTTGAAAAAAT+TGG | - | chr7.3:71397465-71397484 | MS.gene040413:CDS | 25.0% |
!! | TTTTGGATTTCATGGAAAAA+TGG | - | chr7.3:71397017-71397036 | MS.gene040413:CDS | 25.0% |
!!! | AATAGCATTTTTGGATTTCA+TGG | - | chr7.3:71397009-71397028 | MS.gene040413:CDS | 25.0% |
!!! | ATGGTTGATAACAATGAATT+AGG | + | chr7.3:71396839-71396858 | None:intergenic | 25.0% |
!!! | ATTTTGAAGGAAGAATATTC+TGG | - | chr7.3:71397451-71397470 | MS.gene040413:CDS | 25.0% |
!!! | CTGAAGGTTTTTATTTATCA+AGG | - | chr7.3:71397535-71397554 | MS.gene040413:CDS | 25.0% |
!!! | TTTTGAAGGAAGAATATTCT+GGG | - | chr7.3:71397452-71397471 | MS.gene040413:CDS | 25.0% |
AACCCAAAGATATTTCTTTG+AGG | + | chr7.3:71397330-71397349 | None:intergenic | 30.0% | |
ACCCAAAGATATTTCTTTGA+GGG | + | chr7.3:71397329-71397348 | None:intergenic | 30.0% | |
AGTTCATTGAACTCTATGTT+TGG | + | chr7.3:71396941-71396960 | None:intergenic | 30.0% | |
ATGACCTGATTAAACATTTC+AGG | + | chr7.3:71397097-71397116 | None:intergenic | 30.0% | |
CCATAGTCATAAACATAACT+AGG | + | chr7.3:71397241-71397260 | None:intergenic | 30.0% | |
CCTAGTTATGTTTATGACTA+TGG | - | chr7.3:71397238-71397257 | MS.gene040413:CDS | 30.0% | |
GAGAAATGGAGTTAAGTATT+TGG | - | chr7.3:71397141-71397160 | MS.gene040413:CDS | 30.0% | |
TCCCTCAAAGAAATATCTTT+GGG | - | chr7.3:71397325-71397344 | MS.gene040413:CDS | 30.0% | |
TGATATTCAATCAACTGCAT+TGG | - | chr7.3:71397579-71397598 | MS.gene040413:CDS | 30.0% | |
TTCCCTCAAAGAAATATCTT+TGG | - | chr7.3:71397324-71397343 | MS.gene040413:CDS | 30.0% | |
! | CACTTCTTTGAAAGACAAAT+GGG | + | chr7.3:71396867-71396886 | None:intergenic | 30.0% |
! | TAGTTTTTCTCAAGATGAGT+TGG | - | chr7.3:71397198-71397217 | MS.gene040413:CDS | 30.0% |
! | TGCTCAAAGAATAGCATTTT+TGG | - | chr7.3:71397000-71397019 | MS.gene040413:CDS | 30.0% |
!!! | AGATGCTGGTTTTATTTTGA+AGG | - | chr7.3:71397438-71397457 | MS.gene040413:CDS | 30.0% |
AAACTATCTTTGATCCGAGT+TGG | + | chr7.3:71397184-71397203 | None:intergenic | 35.0% | |
AGTGCCTGAAATGTTTAATC+AGG | - | chr7.3:71397090-71397109 | MS.gene040413:CDS | 35.0% | |
ATTGGCCAATTGTGAAAAGT+TGG | - | chr7.3:71397384-71397403 | MS.gene040413:CDS | 35.0% | |
CCATTTGTCTTTCAAAGAAG+TGG | - | chr7.3:71396865-71396884 | MS.gene040413:CDS | 35.0% | |
CTTTGAGCATCAACAATTTC+AGG | + | chr7.3:71396989-71397008 | None:intergenic | 35.0% | |
GAAAGACAAATGGGAGAAAA+TGG | + | chr7.3:71396858-71396877 | None:intergenic | 35.0% | |
TTGATTTCACTCATCCAACT+CGG | - | chr7.3:71397167-71397186 | MS.gene040413:CDS | 35.0% | |
! | ACTCTCCAACTTTTCACAAT+TGG | + | chr7.3:71397392-71397411 | None:intergenic | 35.0% |
! | AGTGAAGCTATGTGCTATTA+AGG | - | chr7.3:71397357-71397376 | MS.gene040413:CDS | 35.0% |
! | ATGTGCTATTAAGGCACTAT+TGG | - | chr7.3:71397366-71397385 | MS.gene040413:CDS | 35.0% |
! | CAATTTTGTTGCTAGTGGAA+TGG | - | chr7.3:71397291-71397310 | MS.gene040413:CDS | 35.0% |
! | CCACTTCTTTGAAAGACAAA+TGG | + | chr7.3:71396868-71396887 | None:intergenic | 35.0% |
! | GTTTGAGTTTGTTTAAGTGC+TGG | - | chr7.3:71397410-71397429 | MS.gene040413:CDS | 35.0% |
!! | TTTTTCTCAAGATGAGTTGG+TGG | - | chr7.3:71397201-71397220 | MS.gene040413:CDS | 35.0% |
AGTTAATGCCCCAAATCTGA+AGG | - | chr7.3:71397519-71397538 | MS.gene040413:CDS | 40.0% | |
TTGGGTGAACATTAGCAAAG+TGG | - | chr7.3:71396913-71396932 | MS.gene040413:CDS | 40.0% | |
! | GCATGCAATTTTGTTGCTAG+TGG | - | chr7.3:71397286-71397305 | MS.gene040413:CDS | 40.0% |
! | CTTGACTTTTCCCTTGAGCA+TGG | - | chr7.3:71397613-71397632 | MS.gene040413:CDS | 45.0% |
!! | AAGTGCTGGAATTCAGATGC+TGG | - | chr7.3:71397424-71397443 | MS.gene040413:CDS | 45.0% |
GTTGCGTCAGCTGTGAGAAA+TGG | - | chr7.3:71397127-71397146 | MS.gene040413:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 71396803 | 71397642 | 71396803 | ID=MS.gene040413 |
chr7.3 | mRNA | 71396803 | 71397642 | 71396803 | ID=MS.gene040413.t1;Parent=MS.gene040413 |
chr7.3 | exon | 71396803 | 71397642 | 71396803 | ID=MS.gene040413.t1.exon1;Parent=MS.gene040413.t1 |
chr7.3 | CDS | 71396803 | 71397642 | 71396803 | ID=cds.MS.gene040413.t1;Parent=MS.gene040413.t1 |
Gene Sequence |
Protein sequence |