AlfalfaGEDB | MS.gene033899

M. sativa cultivar XinJiangDaYe / MS.gene033899

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033899.t1	XP_003595473.1	90.8	459	39	2	1	459	1	456	4.10E-239	837

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033899.t1	Q9C7X8	31.2	420	264	11	10	415	16	424	7.5e-48	193.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033899.t1	G7ISV8	90.8	459	39	2	1	459	1	456	3.0e-239	837.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene047137	MS.gene033899	PPI
MS.gene010060	MS.gene033899	PPI
MS.gene25352	MS.gene033899	PPI
MS.gene34704	MS.gene033899	PPI
MS.gene033899	MS.gene045452	PPI
MS.gene033899	MS.gene031570	PPI
MS.gene94457	MS.gene033899	PPI
MS.gene045439	MS.gene033899	PPI
MS.gene20330	MS.gene033899	PPI
MS.gene25415	MS.gene033899	PPI
MS.gene033899	MS.gene041323	PPI
MS.gene033899	MS.gene25386	PPI
MS.gene033899	MS.gene63221	PPI
MS.gene36066	MS.gene033899	PPI
MS.gene66626	MS.gene033899	PPI
MS.gene041326	MS.gene033899	PPI
MS.gene72958	MS.gene033899	PPI
MS.gene047136	MS.gene033899	PPI
MS.gene045446	MS.gene033899	PPI
MS.gene033899	MS.gene60523	PPI
MS.gene75902	MS.gene033899	PPI
MS.gene033899	MS.gene055877	PPI
MS.gene033899	MS.gene63222	PPI
MS.gene22129	MS.gene033899	PPI
MS.gene63260	MS.gene033899	PPI
MS.gene033899	MS.gene032860	PPI
MS.gene032853	MS.gene033899	PPI
MS.gene033899	MS.gene045448	PPI
MS.gene25299	MS.gene033899	PPI
MS.gene033899	MS.gene34825	PPI
MS.gene91884	MS.gene033899	PPI
MS.gene033899	MS.gene003456	PPI
MS.gene033899	MS.gene99980	PPI
MS.gene033899	MS.gene25297	PPI
MS.gene98001	MS.gene033899	PPI
MS.gene045441	MS.gene033899	PPI
MS.gene033899	MS.gene52136	PPI
MS.gene033899	MS.gene09996	PPI
MS.gene006692	MS.gene033899	PPI
MS.gene033899	MS.gene63256	PPI
MS.gene033899	MS.gene34740	PPI
MS.gene01653	MS.gene033899	PPI
MS.gene033899	MS.gene032295	PPI
MS.gene29863	MS.gene033899	PPI
MS.gene053312	MS.gene033899	PPI
MS.gene25344	MS.gene033899	PPI
MS.gene033899	MS.gene024262	PPI
MS.gene061286	MS.gene033899	PPI
MS.gene79176	MS.gene033899	PPI
MS.gene033899	MS.gene94460	PPI
MS.gene34216	MS.gene033899	PPI
MS.gene72954	MS.gene033899	PPI
MS.gene021295	MS.gene033899	PPI
MS.gene033899	MS.gene64992	PPI
MS.gene049943	MS.gene033899	PPI
MS.gene006730	MS.gene033899	PPI
MS.gene69561	MS.gene033899	PPI
MS.gene033899	MS.gene031603	PPI
MS.gene055882	MS.gene033899	PPI
MS.gene033899	MS.gene75903	PPI
MS.gene91886	MS.gene033899	PPI
MS.gene032852	MS.gene033899	PPI
MS.gene069762	MS.gene033899	PPI
MS.gene072000	MS.gene033899	PPI
MS.gene033899	MS.gene045772	PPI
MS.gene033899	MS.gene031573	PPI
MS.gene033899	MS.gene006723	PPI
MS.gene63257	MS.gene033899	PPI
MS.gene78164	MS.gene033899	PPI
MS.gene045440	MS.gene033899	PPI
MS.gene032862	MS.gene033899	PPI
MS.gene033899	MS.gene25451	PPI
MS.gene006736	MS.gene033899	PPI
MS.gene96357	MS.gene033899	PPI
MS.gene033899	MS.gene95902	PPI
MS.gene51793	MS.gene033899	PPI
MS.gene071257	MS.gene033899	PPI
MS.gene033899	MS.gene51795	PPI
MS.gene54960	MS.gene033899	PPI
MS.gene63177	MS.gene033899	PPI
MS.gene033694	MS.gene033899	PPI
MS.gene033899	MS.gene34766	PPI
MS.gene94458	MS.gene033899	PPI
MS.gene045437	MS.gene033899	PPI
MS.gene95902	MS.gene033899	PPI
MS.gene033899	MS.gene074346	PPI
MS.gene73780	MS.gene033899	PPI
MS.gene34706	MS.gene033899	PPI
MS.gene21278	MS.gene033899	PPI
MS.gene033899	MS.gene003455	PPI
MS.gene99982	MS.gene033899	PPI
MS.gene63111	MS.gene033899	PPI
MS.gene23706	MS.gene033899	PPI
MS.gene033899	MS.gene010060	PPI
MS.gene033899	MS.gene002112	PPI
MS.gene033899	MS.gene040413	PPI
MS.gene033899	MS.gene09997	PPI
MS.gene072003	MS.gene033899	PPI
MS.gene033899	MS.gene63105	PPI
MS.gene033899	MS.gene006728	PPI
MS.gene033899	MS.gene63259	PPI
MS.gene25347	MS.gene033899	PPI
MS.gene033899	MS.gene60525	PPI
MS.gene64989	MS.gene033899	PPI
MS.gene065373	MS.gene033899	PPI
MS.gene041323	MS.gene033899	PPI
MS.gene055883	MS.gene033899	PPI
MS.gene033899	MS.gene007876	PPI
MS.gene031570	MS.gene033899	PPI
MS.gene033897	MS.gene033899	PPI
MS.gene033899	MS.gene033695	PPI
MS.gene033899	MS.gene045451	PPI
MS.gene033899	MS.gene005798	PPI
MS.gene033899	MS.gene34802	PPI
MS.gene033899	MS.gene25348	PPI
MS.gene34738	MS.gene033899	PPI
MS.gene033899	MS.gene031575	PPI
MS.gene25353	MS.gene033899	PPI
MS.gene033899	MS.gene54959	PPI
MS.gene032861	MS.gene033899	PPI
MS.gene028696	MS.gene033899	PPI
MS.gene34703	MS.gene033899	PPI
MS.gene25449	MS.gene033899	PPI
MS.gene033899	MS.gene25450	PPI
MS.gene033899	MS.gene29498	PPI
MS.gene34801	MS.gene033899	PPI
MS.gene75904	MS.gene033899	PPI
MS.gene061531	MS.gene033899	PPI
MS.gene033899	MS.gene045449	PPI
MS.gene033899	MS.gene50153	PPI
MS.gene033899	MS.gene64988	PPI
MS.gene63113	MS.gene033899	PPI
MS.gene34707	MS.gene033899	PPI
MS.gene033899	MS.gene035630	PPI
MS.gene006727	MS.gene033899	PPI
MS.gene63094	MS.gene033899	PPI
MS.gene033899	MS.gene031577	PPI
MS.gene006725	MS.gene033899	PPI
MS.gene033899	MS.gene069763	PPI
MS.gene062537	MS.gene033899	PPI
MS.gene60523	MS.gene033899	PPI
MS.gene29873	MS.gene033899	PPI
MS.gene033899	MS.gene97999	PPI
MS.gene63112	MS.gene033899	PPI
MS.gene033899	MS.gene053311	PPI
MS.gene34804	MS.gene033899	PPI
MS.gene031572	MS.gene033899	PPI
MS.gene73831	MS.gene033899	PPI
MS.gene033899	MS.gene005799	PPI
MS.gene033899	MS.gene25298	PPI
MS.gene033899	MS.gene25448	PPI
MS.gene63213	MS.gene033899	PPI
MS.gene91885	MS.gene033899	PPI
MS.gene041325	MS.gene033899	PPI
MS.gene34824	MS.gene033899	PPI
MS.gene64993	MS.gene033899	PPI
MS.gene20329	MS.gene033899	PPI
MS.gene96120	MS.gene033899	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033899.t1	MTR_2g048140	90.850	459	39	2	1	459	1	456	0.0	852
MS.gene033899.t1	MTR_1g090907	80.828	459	84	3	1	459	1	455	0.0	740
MS.gene033899.t1	MTR_1g090903	59.267	464	131	7	1	459	1	411	4.29e-172	489
MS.gene033899.t1	MTR_3g448340	36.559	465	272	12	5	456	4	458	2.62e-78	251
MS.gene033899.t1	MTR_5g080150	34.644	407	226	7	5	406	3	374	1.33e-63	211
MS.gene033899.t1	MTR_3g049530	28.364	483	245	13	5	457	4	415	5.12e-39	146
MS.gene033899.t1	MTR_1g071060	73.864	88	23	0	40	127	7	94	4.27e-37	131
MS.gene033899.t1	MTR_7g029260	38.793	116	70	1	316	430	44	159	1.22e-18	85.1
MS.gene033899.t1	MTR_8g468810	24.153	472	310	17	5	459	23	463	1.51e-13	72.8
MS.gene033899.t1	MTR_8g058970	22.614	482	329	16	3	459	15	477	6.25e-13	70.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033899.t1	AT1G56400	31.325	415	260	11	16	416	22	425	2.25e-55	191
MS.gene033899.t1	AT5G54820	29.512	471	294	15	9	456	9	464	1.34e-52	184
MS.gene033899.t1	AT3G29830	31.116	466	284	18	10	456	11	458	1.35e-50	178
MS.gene033899.t1	AT3G29830	30.621	467	286	18	10	456	11	459	1.77e-48	172
MS.gene033899.t1	AT1G56400	31.609	348	215	9	83	416	46	384	6.88e-44	160
MS.gene033899.t1	AT3G62230	27.972	429	289	14	6	424	7	425	6.53e-43	157
MS.gene033899.t1	AT2G17305	31.325	166	106	4	298	458	106	268	1.53e-20	91.7
MS.gene033899.t1	AT3G58860	25.405	370	234	15	1	355	1	343	3.32e-15	78.2
MS.gene033899.t1	AT3G28410	23.515	404	253	14	4	394	25	385	2.03e-13	72.4
MS.gene033899.t1	AT2G04230	26.291	426	251	21	5	409	11	394	3.25e-12	68.6
MS.gene033899.t1	AT5G56410	28.629	248	153	8	16	250	12	248	2.57e-11	66.2
MS.gene033899.t1	AT3G59200	24.869	382	227	17	10	357	10	365	3.19e-11	65.1
MS.gene033899.t1	AT3G59240	24.728	368	235	13	7	355	8	352	3.42e-11	65.9
MS.gene033899.t1	AT3G59200	24.802	379	227	16	10	355	10	363	8.33e-11	64.3

Find 79 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTAAATACTTCAAATATTC+TGG	0.116778	2.2:-39006624	MS.gene033899:CDS
AAGTAGACCTTAAGAAATTT+TGG	0.209673	2.2:-39005889	MS.gene033899:CDS
TTTCTTAAGGTCTACTTGAT+AGG	0.232056	2.2:+39005895	None:intergenic
TTGAAGGTGGTAGAAGTAAT+TGG	0.250226	2.2:-39005827	MS.gene033899:CDS
TCATCAACTTTATTACAAAT+TGG	0.280792	2.2:-39007142	MS.gene033899:CDS
GTGGTAAACAAGTGTGATTC+TGG	0.287634	2.2:-39006672	MS.gene033899:CDS
TGCACTCAAAGACTTATCTT+TGG	0.307976	2.2:-39006832	MS.gene033899:CDS
TGTTGCTTTCGCGACACAAC+GGG	0.319150	2.2:-39007033	MS.gene033899:CDS
TTACTTCAGATATAAATGTT+AGG	0.319721	2.2:-39006593	MS.gene033899:CDS
TCCCTAGCCGCGGCATTAAC+AGG	0.324228	2.2:-39007109	MS.gene033899:CDS
CGGAGAAATCATGAAGGATT+TGG	0.330294	2.2:+39006502	None:intergenic
TATTTGAAGTATTTAAGATT+TGG	0.333013	2.2:+39006630	None:intergenic
GAGTTTGGCGAACTTTGATT+TGG	0.334865	2.2:-39006724	MS.gene033899:CDS
TCTTATGCAAGGAAAAGTTT+TGG	0.354339	2.2:-39005765	MS.gene033899:CDS
CTTCAATGAAAACTTCTTTG+TGG	0.359992	2.2:-39007207	MS.gene033899:CDS
ATGCATTCATATGAACTTTG+TGG	0.375385	2.2:-39006121	MS.gene033899:CDS
TTAAATACTTCAAATATTCT+GGG	0.378687	2.2:-39006623	MS.gene033899:CDS
TAACTGTGAAGATAACGATT+TGG	0.394476	2.2:-39006976	MS.gene033899:CDS
AGTCATAAGTTCTTCGTTTG+TGG	0.396856	2.2:+39005796	None:intergenic
GAGTTTGCCAAAATTTCTTA+AGG	0.400757	2.2:+39005882	None:intergenic
TGTTCTTGTTGTGGCTTCTT+CGG	0.401372	2.2:+39007283	None:intergenic
ATATATTAGGTCGTTCCATC+TGG	0.419959	2.2:-39006205	MS.gene033899:intron
GCACTCAAAGACTTATCTTT+GGG	0.421361	2.2:-39006831	MS.gene033899:CDS
ATGCTTGAAAAGTACTTTGA+AGG	0.422530	2.2:-39005843	MS.gene033899:CDS
AGTTTGGCGAACTTTGATTT+GGG	0.426475	2.2:-39006723	MS.gene033899:CDS
TACTTCAGATATAAATGTTA+GGG	0.428980	2.2:-39006592	MS.gene033899:CDS
TCTTGAGAAGTGCTGGAGTT+TGG	0.442130	2.2:-39006739	MS.gene033899:CDS
CAAAGACTTATCTTTGGGTC+GGG	0.446609	2.2:-39006826	MS.gene033899:CDS
AGTTTGCAGTTATCTACTTC+AGG	0.450619	2.2:-39006463	MS.gene033899:intron
GTTTGAGTCTTGAGAAGTGC+TGG	0.462541	2.2:-39006746	MS.gene033899:CDS
ACTGCAAACTGTTAGAATCT+TGG	0.462543	2.2:+39006476	None:intergenic
CGTTCCATCTGGAGATGAAC+CGG	0.463128	2.2:-39006194	MS.gene033899:CDS
TTCTTAAGGTCTACTTGATA+GGG	0.464694	2.2:+39005896	None:intergenic
ACCTGTTAATGCCGCGGCTA+GGG	0.467727	2.2:+39007108	None:intergenic
ACCACTTGGATTAACAAGAT+TGG	0.469749	2.2:-39006694	MS.gene033899:CDS
TTGTTTCCCCACAAGTTTGA+GGG	0.476639	2.2:+39007066	None:intergenic
CTTGTTGTGGCTTCTTCGGA+GGG	0.484040	2.2:+39007287	None:intergenic
TTTCGAACCCTCAAACTTGT+GGG	0.484700	2.2:-39007073	MS.gene033899:CDS
AACAGATTAATATTAGGTTG+TGG	0.495381	2.2:-39005742	MS.gene033899:CDS
AAGTCCACAAGTTATATTTG+AGG	0.508872	2.2:-39006044	MS.gene033899:intron
ACTTGTTGCTTTCTTATGCA+AGG	0.514283	2.2:-39005776	MS.gene033899:CDS
TCAAAGACTTATCTTTGGGT+CGG	0.521149	2.2:-39006827	MS.gene033899:CDS
TTGTGGCTTCTTCGGAGGGT+AGG	0.530760	2.2:+39007291	None:intergenic
GTTTCGAACCCTCAAACTTG+TGG	0.531195	2.2:-39007074	MS.gene033899:CDS
CCAACACATGCTTATCAACT+CGG	0.532114	2.2:-39006927	MS.gene033899:CDS
AAAGCACTTTGCATCTTCAC+CGG	0.532263	2.2:+39006175	None:intergenic
CAAACTTTCAATCGTCCGAC+AGG	0.533228	2.2:+39006764	None:intergenic
AAGAATAGGTGTTCTTGTTG+TGG	0.534155	2.2:+39007274	None:intergenic
TCTTGTTGTGGCTTCTTCGG+AGG	0.538004	2.2:+39007286	None:intergenic
ATTGTTTCCCCACAAGTTTG+AGG	0.540471	2.2:+39007065	None:intergenic
AACCTGTTAATGCCGCGGCT+AGG	0.547285	2.2:+39007107	None:intergenic
GTGTTGCTTTCGCGACACAA+CGG	0.549513	2.2:-39007034	MS.gene033899:CDS
GCAAACTGTTAGAATCTTGG+CGG	0.561620	2.2:+39006479	None:intergenic
ACTTGGATTAACAAGATTGG+TGG	0.562210	2.2:-39006691	MS.gene033899:CDS
GAAACAATCGCAAGAAGAAG+TGG	0.563270	2.2:+39007317	None:intergenic
ACCAATCTTGTTAATCCAAG+TGG	0.566249	2.2:+39006693	None:intergenic
CTTGAAAAGTACTTTGAAGG+TGG	0.570692	2.2:-39005840	MS.gene033899:CDS
AACCATGGCAAAAGATAACA+TGG	0.570974	2.2:-39007363	None:intergenic
TGGTAAACAAGTGTGATTCT+GGG	0.577490	2.2:-39006671	MS.gene033899:CDS
TAAATACTTCAAATATTCTG+GGG	0.577798	2.2:-39006622	MS.gene033899:CDS
AAATGTTAGGGCTATAGAAG+AGG	0.577818	2.2:-39006580	MS.gene033899:CDS
AACTGTTAGAATCTTGGCGG+CGG	0.578443	2.2:+39006482	None:intergenic
CTGACCTCAAATATAACTTG+TGG	0.595453	2.2:+39006040	None:intergenic
CCGAGTTGATAAGCATGTGT+TGG	0.597550	2.2:+39006927	None:intergenic
TGTGAAGATAACGATTTGGA+AGG	0.608019	2.2:-39006972	MS.gene033899:CDS
AACGATTGTTATCAACCTGT+CGG	0.611417	2.2:-39006779	MS.gene033899:CDS
GATTTGGGAGATGAACCACT+TGG	0.617804	2.2:-39006708	MS.gene033899:CDS
TCGCTAAAACTGTATTCGTG+TGG	0.620863	2.2:-39006891	MS.gene033899:CDS
TTCGAACCCTCAAACTTGTG+GGG	0.628166	2.2:-39007072	MS.gene033899:CDS
CTTGTGGGGAAACAATTGAA+CGG	0.638699	2.2:-39007058	MS.gene033899:CDS
ATCACACAATTCCCTAGCCG+CGG	0.645804	2.2:-39007119	MS.gene033899:CDS
AAGCATTGAGGAAACACTCG+AGG	0.661638	2.2:+39005860	None:intergenic
TTCACCGGTTCATCTCCAGA+TGG	0.661858	2.2:+39006190	None:intergenic
GAGAAAACCTGTTAATGCCG+CGG	0.665328	2.2:+39007102	None:intergenic
TGGCGGCGGAGAAATCATGA+AGG	0.685071	2.2:+39006496	None:intergenic
GAATCAGAATTCAATGAACG+TGG	0.690987	2.2:-39006537	MS.gene033899:CDS
AGGTTGTGGAATGAAGATGA+TGG	0.717863	2.2:-39005728	MS.gene033899:CDS
GTTGCTTTCGCGACACAACG+GGG	0.718979	2.2:-39007032	MS.gene033899:CDS
GGTAAAGAAGAATTTCGACG+TGG	0.767396	2.2:-39005707	MS.gene033899:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TATATCAACATACATATATT+AGG	-	chr2.2:39006784-39006803	MS.gene033899:CDS	15.0%
!!	TTAAATACTTCAAATATTCT+GGG	-	chr2.2:39006379-39006398	MS.gene033899:intron	15.0%
!!	TTCTTGTTAATGATTAAATA+TGG	-	chr2.2:39006578-39006597	MS.gene033899:CDS	15.0%
!!!	TATTTGAAGTATTTAAGATT+TGG	+	chr2.2:39006375-39006394	None:intergenic	15.0%
!!	CTTAAATACTTCAAATATTC+TGG	-	chr2.2:39006378-39006397	MS.gene033899:intron	20.0%
!!	GTCATTGATATATTGTTATA+TGG	-	chr2.2:39007027-39007046	MS.gene033899:CDS	20.0%
!!	TAAATACTTCAAATATTCTG+GGG	-	chr2.2:39006380-39006399	MS.gene033899:intron	20.0%
!!	TACTTCAGATATAAATGTTA+GGG	-	chr2.2:39006410-39006429	MS.gene033899:intron	20.0%
!!	TCATCAACTTTATTACAAAT+TGG	-	chr2.2:39005860-39005879	MS.gene033899:CDS	20.0%
!!	TTACTTCAGATATAAATGTT+AGG	-	chr2.2:39006409-39006428	MS.gene033899:intron	20.0%
!!!	TTTTGGAACAGATTAATATT+AGG	-	chr2.2:39007254-39007273	MS.gene033899:CDS	20.0%
!	ATGGTACTAGTATATTTAGT+TGG	-	chr2.2:39006597-39006616	MS.gene033899:CDS	25.0%
!	TAAAACTGTAGCAAAATTGT+TGG	-	chr2.2:39006720-39006739	MS.gene033899:CDS	25.0%
!	TGTTTGCTTGTATATATTAC+AGG	-	chr2.2:39007072-39007091	MS.gene033899:CDS	25.0%
!!	AACAGATTAATATTAGGTTG+TGG	-	chr2.2:39007260-39007279	MS.gene033899:CDS	25.0%
!!	AAGTAGACCTTAAGAAATTT+TGG	-	chr2.2:39007113-39007132	MS.gene033899:CDS	25.0%
!!	ATGCAAGATTTTCTTAACTT+TGG	-	chr2.2:39006147-39006166	MS.gene033899:CDS	25.0%
	AAGTCCACAAGTTATATTTG+AGG	-	chr2.2:39006958-39006977	MS.gene033899:CDS	30.0%
	ATGCATTCATATGAACTTTG+TGG	-	chr2.2:39006881-39006900	MS.gene033899:CDS	30.0%
	CTTCAATGAAAACTTCTTTG+TGG	-	chr2.2:39005795-39005814	MS.gene033899:CDS	30.0%
	GAGTTTGCCAAAATTTCTTA+AGG	+	chr2.2:39007123-39007142	None:intergenic	30.0%
	TAACTGTGAAGATAACGATT+TGG	-	chr2.2:39006026-39006045	MS.gene033899:intron	30.0%
	TCGAAAAATGGTCAAAGATA+TGG	-	chr2.2:39005752-39005771	MS.gene033899:CDS	30.0%
	TTCTTAAGGTCTACTTGATA+GGG	+	chr2.2:39007109-39007128	None:intergenic	30.0%
	TTTCTTAAGGTCTACTTGAT+AGG	+	chr2.2:39007110-39007129	None:intergenic	30.0%
!	ACTTTTAGTCAAAGCTCAAA+AGG	-	chr2.2:39007327-39007346	MS.gene033899:CDS	30.0%
!	ATTGAAGTCGATGTTTTCTT+CGG	+	chr2.2:39005782-39005801	None:intergenic	30.0%
!	CTTTTAGTCAAAGCTCAAAA+GGG	-	chr2.2:39007328-39007347	MS.gene033899:CDS	30.0%
!	TCTTATGCAAGGAAAAGTTT+TGG	-	chr2.2:39007237-39007256	MS.gene033899:CDS	30.0%
!!	AAAGTACTTTTCAAGCATTG+AGG	+	chr2.2:39007157-39007176	None:intergenic	30.0%
!!	ATGCTTGAAAAGTACTTTGA+AGG	-	chr2.2:39007159-39007178	MS.gene033899:CDS	30.0%
!!!	AATGTGAGTTTTTCAAGCAA+TGG	+	chr2.2:39006932-39006951	None:intergenic	30.0%
!!!	ATGTGAGTTTTTCAAGCAAT+GGG	+	chr2.2:39006931-39006950	None:intergenic	30.0%
	AAATGTTAGGGCTATAGAAG+AGG	-	chr2.2:39006422-39006441	MS.gene033899:intron	35.0%
	AACGATTGTTATCAACCTGT+CGG	-	chr2.2:39006223-39006242	MS.gene033899:intron	35.0%
	AAGAATAGGTGTTCTTGTTG+TGG	+	chr2.2:39005731-39005750	None:intergenic	35.0%
	ACCAATCTTGTTAATCCAAG+TGG	+	chr2.2:39006312-39006331	None:intergenic	35.0%
	ACCACTTGGATTAACAAGAT+TGG	-	chr2.2:39006308-39006327	MS.gene033899:intron	35.0%
	ACTGCAAACTGTTAGAATCT+TGG	+	chr2.2:39006529-39006548	None:intergenic	35.0%
	ACTTGGATTAACAAGATTGG+TGG	-	chr2.2:39006311-39006330	MS.gene033899:intron	35.0%
	AGTCATAAGTTCTTCGTTTG+TGG	+	chr2.2:39007209-39007228	None:intergenic	35.0%
	AGTTTGCAGTTATCTACTTC+AGG	-	chr2.2:39006539-39006558	MS.gene033899:CDS	35.0%
	ATATATTAGGTCGTTCCATC+TGG	-	chr2.2:39006797-39006816	MS.gene033899:CDS	35.0%
	CACCTATTCTTCTCGAAAAA+TGG	-	chr2.2:39005740-39005759	MS.gene033899:CDS	35.0%
	CTGACCTCAAATATAACTTG+TGG	+	chr2.2:39006965-39006984	None:intergenic	35.0%
	GAATCAGAATTCAATGAACG+TGG	-	chr2.2:39006465-39006484	MS.gene033899:CDS	35.0%
	GCACTCAAAGACTTATCTTT+GGG	-	chr2.2:39006171-39006190	MS.gene033899:CDS	35.0%
	TCAAAGACTTATCTTTGGGT+CGG	-	chr2.2:39006175-39006194	MS.gene033899:CDS	35.0%
	TGCACTCAAAGACTTATCTT+TGG	-	chr2.2:39006170-39006189	MS.gene033899:CDS	35.0%
	TGGTAAACAAGTGTGATTCT+GGG	-	chr2.2:39006331-39006350	MS.gene033899:intron	35.0%
	TTGAAGGTGGTAGAAGTAAT+TGG	-	chr2.2:39007175-39007194	MS.gene033899:CDS	35.0%
!	AGTTTGGCGAACTTTGATTT+GGG	-	chr2.2:39006279-39006298	MS.gene033899:intron	35.0%
!	CATTAACAGGTTTTCTCTCA+CGG	-	chr2.2:39005906-39005925	MS.gene033899:CDS	35.0%
!	TGTGAAGATAACGATTTGGA+AGG	-	chr2.2:39006030-39006049	MS.gene033899:intron	35.0%
!!	ACTTGTTGCTTTCTTATGCA+AGG	-	chr2.2:39007226-39007245	MS.gene033899:CDS	35.0%
!!	CTTGAAAAGTACTTTGAAGG+TGG	-	chr2.2:39007162-39007181	MS.gene033899:CDS	35.0%
!!!	GACCATTTTTCGAGAAGAAT+AGG	+	chr2.2:39005745-39005764	None:intergenic	35.0%
	AGGTTGTGGAATGAAGATGA+TGG	-	chr2.2:39007274-39007293	MS.gene033899:CDS	40.0%
	ATTGTTTCCCCACAAGTTTG+AGG	+	chr2.2:39005940-39005959	None:intergenic	40.0%
	CAAAGACTTATCTTTGGGTC+GGG	-	chr2.2:39006176-39006195	MS.gene033899:CDS	40.0%
	CCAACACATGCTTATCAACT+CGG	-	chr2.2:39006075-39006094	MS.gene033899:CDS	40.0%
	CGGAGAAATCATGAAGGATT+TGG	+	chr2.2:39006503-39006522	None:intergenic	40.0%
	CTTGTGGGGAAACAATTGAA+CGG	-	chr2.2:39005944-39005963	MS.gene033899:intron	40.0%
	GAAACAATCGCAAGAAGAAG+TGG	+	chr2.2:39005688-39005707	None:intergenic	40.0%
	GAGTTTGGCGAACTTTGATT+TGG	-	chr2.2:39006278-39006297	MS.gene033899:intron	40.0%
	GCAAACTGTTAGAATCTTGG+CGG	+	chr2.2:39006526-39006545	None:intergenic	40.0%
	GGTAAAGAAGAATTTCGACG+TGG	-	chr2.2:39007295-39007314	MS.gene033899:CDS	40.0%
	GTGGTAAACAAGTGTGATTC+TGG	-	chr2.2:39006330-39006349	MS.gene033899:intron	40.0%
	TCGCTAAAACTGTATTCGTG+TGG	-	chr2.2:39006111-39006130	MS.gene033899:CDS	40.0%
	TTGTTTCCCCACAAGTTTGA+GGG	+	chr2.2:39005939-39005958	None:intergenic	40.0%
	TTTCGAACCCTCAAACTTGT+GGG	-	chr2.2:39005929-39005948	MS.gene033899:intron	40.0%
!	AAAGCACTTTGCATCTTCAC+CGG	+	chr2.2:39006830-39006849	None:intergenic	40.0%
!	TGTTCTTGTTGTGGCTTCTT+CGG	+	chr2.2:39005722-39005741	None:intergenic	40.0%
	AACTGTTAGAATCTTGGCGG+CGG	+	chr2.2:39006523-39006542	None:intergenic	45.0%
	CAAACTTTCAATCGTCCGAC+AGG	+	chr2.2:39006241-39006260	None:intergenic	45.0%
	GAGAAAACCTGTTAATGCCG+CGG	+	chr2.2:39005903-39005922	None:intergenic	45.0%
	GATTTGGGAGATGAACCACT+TGG	-	chr2.2:39006294-39006313	MS.gene033899:intron	45.0%
	GTTTCGAACCCTCAAACTTG+TGG	-	chr2.2:39005928-39005947	MS.gene033899:intron	45.0%
	TTCGAACCCTCAAACTTGTG+GGG	-	chr2.2:39005930-39005949	MS.gene033899:intron	45.0%
!	GTTTGAGTCTTGAGAAGTGC+TGG	-	chr2.2:39006256-39006275	MS.gene033899:intron	45.0%
!!	AAGCATTGAGGAAACACTCG+AGG	+	chr2.2:39007145-39007164	None:intergenic	45.0%
!!	CCGAGTTGATAAGCATGTGT+TGG	+	chr2.2:39006078-39006097	None:intergenic	45.0%
!!	TCTTGAGAAGTGCTGGAGTT+TGG	-	chr2.2:39006263-39006282	MS.gene033899:intron	45.0%
	ATCACACAATTCCCTAGCCG+CGG	-	chr2.2:39005883-39005902	MS.gene033899:CDS	50.0%
	CGTTCCATCTGGAGATGAAC+CGG	-	chr2.2:39006808-39006827	MS.gene033899:CDS	50.0%
!	CTTGTTGTGGCTTCTTCGGA+GGG	+	chr2.2:39005718-39005737	None:intergenic	50.0%
!	TCTTGTTGTGGCTTCTTCGG+AGG	+	chr2.2:39005719-39005738	None:intergenic	50.0%
!!	GTGTTGCTTTCGCGACACAA+CGG	-	chr2.2:39005968-39005987	MS.gene033899:intron	50.0%
!!	TGTTGCTTTCGCGACACAAC+GGG	-	chr2.2:39005969-39005988	MS.gene033899:intron	50.0%
!!	TTCACCGGTTCATCTCCAGA+TGG	+	chr2.2:39006815-39006834	None:intergenic	50.0%
	AACCTGTTAATGCCGCGGCT+AGG	+	chr2.2:39005898-39005917	None:intergenic	55.0%
	ACCTGTTAATGCCGCGGCTA+GGG	+	chr2.2:39005897-39005916	None:intergenic	55.0%
	TGGCGGCGGAGAAATCATGA+AGG	+	chr2.2:39006509-39006528	None:intergenic	55.0%
	TTGTGGCTTCTTCGGAGGGT+AGG	+	chr2.2:39005714-39005733	None:intergenic	55.0%
!	GTTGCTTTCGCGACACAACG+GGG	-	chr2.2:39005970-39005989	MS.gene033899:intron	55.0%
	TCCCTAGCCGCGGCATTAAC+AGG	-	chr2.2:39005893-39005912	MS.gene033899:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	39005643	39007381	39005643	ID=MS.gene033899
chr2.2	mRNA	39005643	39007381	39005643	ID=MS.gene033899.t1;Parent=MS.gene033899
chr2.2	exon	39006464	39007381	39006464	ID=MS.gene033899.t1.exon1;Parent=MS.gene033899.t1
chr2.2	CDS	39006464	39007381	39006464	ID=cds.MS.gene033899.t1;Parent=MS.gene033899.t1
chr2.2	exon	39006045	39006218	39006045	ID=MS.gene033899.t1.exon2;Parent=MS.gene033899.t1
chr2.2	CDS	39006045	39006218	39006045	ID=cds.MS.gene033899.t1;Parent=MS.gene033899.t1
chr2.2	exon	39005643	39005930	39005643	ID=MS.gene033899.t1.exon3;Parent=MS.gene033899.t1
chr2.2	CDS	39005643	39005930	39005643	ID=cds.MS.gene033899.t1;Parent=MS.gene033899.t1

Gene Sequence

>MS.gene033899

ATGGCAAAAGATAACATGGAATTGTTTTCTTCGATGCTAAAACCACTTCTTCTTGCGATTGTTTCTTTCCTACCCTCCGAAGAAGCCACAACAAGAACACCTATTCTTCTCGAAAAATGGTCAAAGATATGGCAATCCGAAGAAAACATCGACTTCAATGAAAACTTCTTTGTGGATTCAACTTCTGATGAAAACAAACAAGAACAAAGAAAAGTTTTCATCAACTTTATTACAAATTGGATCACACAATTCCCTAGCCGCGGCATTAACAGGTTTTCTCTCACGGTTTCGAACCCTCAAACTTGTGGGGAAACAATTGAACGGTGTGTTGCTTTCGCGACACAACGGGGTGTGAAAGATCTAATTCTTGATTTCTCTGATTCTAACTGTGAAGATAACGATTTGGAAGGCAAACATGTGTTGTTTCAATTGCCAACACATGCTTATCAACTCGGATTGTCGCTTGAATCGCTAAAACTGTATTCGTGTGGTTTCAATTTCGATATGCAAGATTTTCTTAACTTTGGTGCACTCAAAGACTTATCTTTGGGTCGGGTTGAAGTTAAAATCAAAACACTAAAACGATTGTTATCAACCTGTCGGACGATTGAAAGTTTGAGTCTTGAGAAGTGCTGGAGTTTGGCGAACTTTGATTTGGGAGATGAACCACTTGGATTAACAAGATTGGTGGTAAACAAGTGTGATTCTGGGTATTTCATATTTAATGCACCAAATCTTAAATACTTCAAATATTCTGGGGTTGTGTTTACTTCAGATATAAATGTTAGGGCTATAGAAGAGGTAGACATTGATTTTTCTCTAGAATCAGAATTCAATGAACGTGGTAATGAACTCTGCCAAATCCTTCATGATTTCTCCGCCGCCAAGATTCTAACAGTTTGCAGTTATCTACTTCAGGTACTCTTTTAATTAATTTCTTGTTAATGATTAAATATGGTACTAGTATATTTAGTTGGCATGTATTTTGTGCAAGTATATATAAATTGATCTTGCACTAAAATTTAATGAGTCATTATTTTGTGATTCGTCGTCAATTTCAAGTTGTGATTACGATAGTAAAACTGTAGCAAAATTGTTGGTTTAATTTAATTTGCATTGTAGTACGTACGTTATGATATCTTATATCAACATACATATATTAGGTCGTTCCATCTGGAGATGAACCGGTGAAGATGCAAAGTGCTTTGAATGTAAAACATTTGACTCTAAAGACTCAAATGCATTCATATGAACTTTGTGGATTTGAATTCATGCTCAACAGTTGCCCATTGCTTGAAAAACTCACATTAGACATAAGTCCACAAGTTATATTTGAGGTCAGTCAAATACTTTACATTTTTTTCTCTCAATTTTTGACATAGTAGTCATTGATATATTGTTATATGGTTTGATTTTTAACATTTTTGAATGTTTGCTTGTATATATTACAGGACTATACACTTCCCTATCAAGTAGACCTTAAGAAATTTTGGCAAACTCCTCGAGTGTTTCCTCAATGCTTGAAAAGTACTTTGAAGGTGGTAGAAGTAATTGGATTGAGAGCCACAAACGAAGAACTTATGACTTGTTGCTTTCTTATGCAAGGAAAAGTTTTGGAACAGATTAATATTAGGTTGTGGAATGAAGATGATGGTAAAGAAGAATTTCGACGTGGATGTGCACAACTTTTAGTCAAAGCTCAAAAGGGTTCAAAGAATTTGCAAATATCAATTGATTGA

Protein sequence

>MS.gene033899.t1

MAKDNMELFSSMLKPLLLAIVSFLPSEEATTRTPILLEKWSKIWQSEENIDFNENFFVDSTSDENKQEQRKVFINFITNWITQFPSRGINRFSLTVSNPQTCGETIERCVAFATQRGVKDLILDFSDSNCEDNDLEGKHVLFQLPTHAYQLGLSLESLKLYSCGFNFDMQDFLNFGALKDLSLGRVEVKIKTLKRLLSTCRTIESLSLEKCWSLANFDLGDEPLGLTRLVVNKCDSGYFIFNAPNLKYFKYSGVVFTSDINVRAIEEVDIDFSLESEFNERGNELCQILHDFSAAKILTVCSYLLQVVPSGDEPVKMQSALNVKHLTLKTQMHSYELCGFEFMLNSCPLLEKLTLDISPQVIFEDYTLPYQVDLKKFWQTPRVFPQCLKSTLKVVEVIGLRATNEELMTCCFLMQGKVLEQINIRLWNEDDGKEEFRRGCAQLLVKAQKGSKNLQISID