Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20330.t1 | XP_013469325.1 | 91 | 455 | 41 | 0 | 1 | 455 | 1 | 455 | 1.60E-238 | 835.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20330.t1 | Q9FFU7 | 30.0 | 436 | 278 | 10 | 10 | 425 | 10 | 438 | 2.9e-52 | 207.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20330.t1 | A0A072VPR4 | 91.0 | 455 | 41 | 0 | 1 | 455 | 1 | 455 | 1.1e-238 | 835.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20330.t1 | MTR_1g090907 | 90.989 | 455 | 41 | 0 | 1 | 455 | 1 | 455 | 0.0 | 848 |
MS.gene20330.t1 | MTR_2g048140 | 81.798 | 456 | 82 | 1 | 1 | 455 | 1 | 456 | 0.0 | 759 |
MS.gene20330.t1 | MTR_1g090903 | 61.050 | 457 | 130 | 5 | 1 | 455 | 1 | 411 | 0.0 | 520 |
MS.gene20330.t1 | MTR_3g448340 | 35.470 | 468 | 269 | 12 | 5 | 452 | 4 | 458 | 2.73e-81 | 259 |
MS.gene20330.t1 | MTR_5g080150 | 34.988 | 403 | 219 | 8 | 9 | 403 | 7 | 374 | 2.16e-65 | 215 |
MS.gene20330.t1 | MTR_3g049530 | 30.353 | 481 | 236 | 16 | 4 | 453 | 3 | 415 | 9.42e-51 | 177 |
MS.gene20330.t1 | MTR_1g071060 | 72.222 | 90 | 25 | 0 | 39 | 128 | 7 | 96 | 3.51e-38 | 134 |
MS.gene20330.t1 | MTR_7g029260 | 35.714 | 126 | 80 | 1 | 303 | 427 | 34 | 159 | 2.07e-17 | 81.6 |
MS.gene20330.t1 | MTR_2g072720 | 25.641 | 468 | 279 | 21 | 2 | 433 | 25 | 459 | 2.14e-12 | 69.3 |
MS.gene20330.t1 | MTR_8g468470 | 21.983 | 464 | 309 | 19 | 3 | 436 | 10 | 450 | 2.68e-12 | 68.9 |
MS.gene20330.t1 | MTR_5g066890 | 35.955 | 89 | 51 | 3 | 318 | 404 | 1 | 85 | 8.47e-11 | 58.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20330.t1 | AT5G54820 | 29.977 | 437 | 279 | 10 | 9 | 425 | 9 | 438 | 4.19e-59 | 201 |
MS.gene20330.t1 | AT1G56400 | 29.362 | 470 | 287 | 12 | 12 | 444 | 18 | 479 | 9.47e-59 | 200 |
MS.gene20330.t1 | AT3G62230 | 27.293 | 458 | 314 | 12 | 8 | 453 | 9 | 459 | 7.05e-52 | 182 |
MS.gene20330.t1 | AT3G29830 | 29.954 | 434 | 271 | 13 | 10 | 423 | 11 | 431 | 6.41e-51 | 179 |
MS.gene20330.t1 | AT3G29830 | 29.466 | 431 | 278 | 12 | 10 | 423 | 11 | 432 | 1.99e-49 | 175 |
MS.gene20330.t1 | AT1G56400 | 30.250 | 400 | 235 | 11 | 82 | 444 | 46 | 438 | 1.34e-48 | 172 |
MS.gene20330.t1 | AT2G17305 | 31.707 | 164 | 107 | 3 | 295 | 454 | 106 | 268 | 3.69e-19 | 87.4 |
MS.gene20330.t1 | AT3G58940 | 26.277 | 274 | 152 | 12 | 6 | 252 | 1 | 251 | 8.96e-12 | 67.8 |
MS.gene20330.t1 | AT3G58940 | 26.277 | 274 | 152 | 12 | 6 | 252 | 1 | 251 | 8.96e-12 | 67.8 |
MS.gene20330.t1 | AT3G28410 | 20.972 | 391 | 260 | 12 | 12 | 391 | 33 | 385 | 5.65e-11 | 64.7 |
MS.gene20330.t1 | AT5G56370 | 23.210 | 405 | 255 | 16 | 9 | 402 | 4 | 363 | 8.64e-11 | 63.9 |
MS.gene20330.t1 | AT5G56370 | 23.210 | 405 | 255 | 16 | 9 | 402 | 4 | 363 | 8.64e-11 | 63.9 |
Find 78 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTAAATACTTCAAATATTC+TGG | 0.116368 | 1.3:-63939735 | MS.gene20330:CDS |
TTGATTTCTCTGATCCTAAA+TGG | 0.158820 | 1.3:-63940097 | MS.gene20330:CDS |
AAGTAGACCTTAAGAAATTT+TGG | 0.209673 | 1.3:-63939045 | MS.gene20330:CDS |
AAATTGTTATCTTCCCATTT+AGG | 0.210930 | 1.3:+63940083 | None:intergenic |
CGCAAATTCTTTGAACGCTT+TGG | 0.247622 | 1.3:+63938818 | None:intergenic |
TCTTGAGAATTGTTGGAATT+TGG | 0.254022 | 1.3:-63939850 | MS.gene20330:CDS |
GAATTTGGCAAACTTTGATT+TGG | 0.267542 | 1.3:-63939835 | MS.gene20330:CDS |
AAAATTTGTTATCAACTTGT+AGG | 0.276512 | 1.3:-63939890 | MS.gene20330:CDS |
TGCACTCAAAGATTTGTCTT+TGG | 0.298466 | 1.3:-63939943 | MS.gene20330:CDS |
GCTCAAAAGCTGCCCATTGC+TGG | 0.325341 | 1.3:-63939257 | MS.gene20330:CDS |
TATTTGAAGTATTTAAGATT+TGG | 0.333013 | 1.3:+63939741 | None:intergenic |
ATCAATGTCTACCTCTTCTA+TGG | 0.339261 | 1.3:+63939680 | None:intergenic |
TAAATGGGAAGATAACAATT+TGG | 0.344219 | 1.3:-63940081 | MS.gene20330:CDS |
ATATCTTTAACCAGTTGTTT+AGG | 0.344304 | 1.3:+63940357 | None:intergenic |
ATTTCTTAAGGTCTACTTGA+TGG | 0.344830 | 1.3:+63939050 | None:intergenic |
GCACTCAAAGATTTGTCTTT+GGG | 0.346946 | 1.3:-63939942 | MS.gene20330:CDS |
TCTTATGCAAGGAAAAGTTT+TGG | 0.354339 | 1.3:-63938921 | MS.gene20330:CDS |
GTTTGAGTCTTGAGAATTGT+TGG | 0.356911 | 1.3:-63939857 | MS.gene20330:CDS |
ATTGCAAGACGAAGTGATTC+TGG | 0.358588 | 1.3:+63940425 | None:intergenic |
GATAAACCTGCGTTGGCAAT+TGG | 0.365643 | 1.3:+63940039 | None:intergenic |
AGAGTTCATTGCCACGTTCA+TGG | 0.376627 | 1.3:+63939637 | None:intergenic |
AGTCATAAGTTCTTCATTTG+TGG | 0.376656 | 1.3:+63938952 | None:intergenic |
AATTTGGCAAACTTTGATTT+GGG | 0.381661 | 1.3:-63939834 | MS.gene20330:CDS |
TAAACAACTGGTTAAAGATA+TGG | 0.390128 | 1.3:-63940355 | MS.gene20330:CDS |
TTAAATACTTCAAATATTCT+GGG | 0.391463 | 1.3:-63939734 | MS.gene20330:CDS |
TGTTCTCCTTGCGGCTTCTT+CGG | 0.394545 | 1.3:+63940385 | None:intergenic |
ATCGAAATTGATGTGGTCTT+CGG | 0.395752 | 1.3:+63940328 | None:intergenic |
TTGAAGGTGGTAGAAGTAAT+CGG | 0.408674 | 1.3:-63938983 | MS.gene20330:CDS |
GAGTTTGCCAAAATTTCTTA+AGG | 0.408773 | 1.3:+63939038 | None:intergenic |
TTCAAATCCACAAAGCTCAT+AGG | 0.414020 | 1.3:+63939285 | None:intergenic |
ATGCATCCCTATGAGCTTTG+TGG | 0.415004 | 1.3:-63939292 | MS.gene20330:CDS |
ACTGCAAACTGTTAGAATCT+TGG | 0.420814 | 1.3:+63939587 | None:intergenic |
TTTCTTAAGGTCTACTTGAT+GGG | 0.428036 | 1.3:+63939051 | None:intergenic |
CTCCTTGCGGCTTCTTCGGA+AGG | 0.435231 | 1.3:+63940389 | None:intergenic |
TCATCGACTTCATCACAAAC+TGG | 0.438278 | 1.3:-63940247 | MS.gene20330:CDS |
TTACTTCAGATGTAAATGTA+AGG | 0.455810 | 1.3:-63939704 | MS.gene20330:CDS |
GAACAAGTATCCTAAACAAC+TGG | 0.457299 | 1.3:-63940367 | MS.gene20330:CDS |
TGATTTCTCTGATCCTAAAT+GGG | 0.458338 | 1.3:-63940096 | MS.gene20330:CDS |
TTTCAAACCCTCAAACTTGT+GGG | 0.475584 | 1.3:-63940178 | MS.gene20330:CDS |
TCAAAGATTTGTCTTTGGGT+TGG | 0.475817 | 1.3:-63939938 | MS.gene20330:CDS |
TTGTTTCCCCACAAGTTTGA+GGG | 0.476639 | 1.3:+63940171 | None:intergenic |
AGCACTTGGATTAACAAGAT+TGG | 0.479484 | 1.3:-63939805 | MS.gene20330:CDS |
TGTTCCATCCGGAGATGAAT+CGG | 0.486372 | 1.3:-63939365 | MS.gene20330:CDS |
TGGCATGTTATTTCTTGCCA+TGG | 0.492796 | 1.3:+63940463 | None:intergenic |
ATTAAGTTGTCGAATGAAGA+TGG | 0.494144 | 1.3:-63938887 | MS.gene20330:CDS |
CATCCGCTCCGATTCATCTC+CGG | 0.508668 | 1.3:+63939357 | None:intergenic |
AAGTCCACAAGTTATATTTG+AGG | 0.508872 | 1.3:-63939215 | MS.gene20330:intron |
TCAAATCCACAAAGCTCATA+GGG | 0.508994 | 1.3:+63939286 | None:intergenic |
ACTTGTTGCTTTCTTATGCA+AGG | 0.514283 | 1.3:-63938932 | MS.gene20330:CDS |
TTCTTAAGGTCTACTTGATG+GGG | 0.518779 | 1.3:+63939052 | None:intergenic |
CCAACGCAGGTTTATCAACT+CGG | 0.534120 | 1.3:-63940032 | MS.gene20330:CDS |
AGTTTGCAGTTATTTACTCC+AGG | 0.537677 | 1.3:-63939574 | MS.gene20330:intron |
ATTGTTTCCCCACAAGTTTG+AGG | 0.540471 | 1.3:+63940170 | None:intergenic |
ATTTCAAACCCTCAAACTTG+TGG | 0.540788 | 1.3:-63940179 | MS.gene20330:CDS |
ACTTGGATTAACAAGATTGG+TGG | 0.553442 | 1.3:-63939802 | MS.gene20330:CDS |
GTTGTCGAATGAAGATGGTA+AGG | 0.554984 | 1.3:-63938882 | MS.gene20330:CDS |
TACTTCAGATGTAAATGTAA+GGG | 0.555889 | 1.3:-63939703 | MS.gene20330:CDS |
TTGCGGCTTCTTCGGAAGGT+AGG | 0.559549 | 1.3:+63940393 | None:intergenic |
GCAAACTGTTAGAATCTTGG+CGG | 0.561620 | 1.3:+63939590 | None:intergenic |
TCACTTAAATTGTATTCATG+TGG | 0.563141 | 1.3:-63939996 | MS.gene20330:CDS |
TAGGATACTTGTTCTCCTTG+CGG | 0.568084 | 1.3:+63940376 | None:intergenic |
AACTGTTAGAATCTTGGCGG+CGG | 0.578443 | 1.3:+63939593 | None:intergenic |
GATTTGGGAGATGAAGCACT+TGG | 0.579721 | 1.3:-63939819 | MS.gene20330:CDS |
CCGAGTTGATAAACCTGCGT+TGG | 0.582629 | 1.3:+63940032 | None:intergenic |
CTGACCTCAAATATAACTTG+TGG | 0.595453 | 1.3:+63939211 | None:intergenic |
CTAAAAGTTGTGCACATCCA+CGG | 0.603973 | 1.3:+63938849 | None:intergenic |
TAAATACTTCAAATATTCTG+GGG | 0.604843 | 1.3:-63939733 | MS.gene20330:CDS |
CGCTCCGATTCATCTCCGGA+TGG | 0.616905 | 1.3:+63939361 | None:intergenic |
TACCTTCCGAAGAAGCCGCA+AGG | 0.619142 | 1.3:-63940391 | MS.gene20330:CDS |
GAGAAAACTTGTCGATGTCA+CGG | 0.625302 | 1.3:+63940207 | None:intergenic |
TTCAAACCCTCAAACTTGTG+GGG | 0.628166 | 1.3:-63940177 | MS.gene20330:CDS |
AAATGTAAGGGCCATAGAAG+AGG | 0.630077 | 1.3:-63939691 | MS.gene20330:CDS |
TCTGGTATCAAAGAAAACAA+TGG | 0.640546 | 1.3:+63940443 | None:intergenic |
GTTGTTCCAATTGCCAACGC+AGG | 0.640937 | 1.3:-63940045 | MS.gene20330:CDS |
TGGCGGCGGAGAAATCATGA+AGG | 0.685071 | 1.3:+63939607 | None:intergenic |
GAATCAGATTTCCATGAACG+TGG | 0.696307 | 1.3:-63939648 | MS.gene20330:CDS |
GGTAAGGTCGAATTTCGCCG+TGG | 0.737861 | 1.3:-63938866 | MS.gene20330:CDS |
CATCCGGAGATGAATCGGAG+CGG | 0.748262 | 1.3:-63939360 | MS.gene20330:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAATACTTCAAATATTCT+GGG | - | chr1.3:63939529-63939548 | MS.gene20330:intron | 15.0% |
!!! | TATTTGAAGTATTTAAGATT+TGG | + | chr1.3:63939525-63939544 | None:intergenic | 15.0% |
!! | CTCTAAACATTGTTATAAAA+AGG | - | chr1.3:63939874-63939893 | MS.gene20330:CDS | 20.0% |
!! | CTTAAATACTTCAAATATTC+TGG | - | chr1.3:63939528-63939547 | MS.gene20330:intron | 20.0% |
!! | GTCATTGATATATAGTTATA+TGG | - | chr1.3:63940129-63940148 | MS.gene20330:CDS | 20.0% |
!! | TAAATACTTCAAATATTCTG+GGG | - | chr1.3:63939530-63939549 | MS.gene20330:intron | 20.0% |
!!! | AAAATTTGTTATCAACTTGT+AGG | - | chr1.3:63939373-63939392 | MS.gene20330:intron | 20.0% |
!!! | CTTTTTATAACAATGTTTAG+AGG | + | chr1.3:63939876-63939895 | None:intergenic | 20.0% |
! | AAATTGTTATCTTCCCATTT+AGG | + | chr1.3:63939183-63939202 | None:intergenic | 25.0% |
! | ATATCTTTAACCAGTTGTTT+AGG | + | chr1.3:63938909-63938928 | None:intergenic | 25.0% |
! | ATGCTTGAAAAATACTTTGA+AGG | - | chr1.3:63940264-63940283 | MS.gene20330:CDS | 25.0% |
! | TAAACAACTGGTTAAAGATA+TGG | - | chr1.3:63938908-63938927 | MS.gene20330:CDS | 25.0% |
! | TAAATGGGAAGATAACAATT+TGG | - | chr1.3:63939182-63939201 | MS.gene20330:intron | 25.0% |
! | TACTTCAGATGTAAATGTAA+GGG | - | chr1.3:63939560-63939579 | MS.gene20330:intron | 25.0% |
! | TCACTTAAATTGTATTCATG+TGG | - | chr1.3:63939267-63939286 | MS.gene20330:CDS | 25.0% |
! | TTACTTCAGATGTAAATGTA+AGG | - | chr1.3:63939559-63939578 | MS.gene20330:intron | 25.0% |
!! | AAGTAGACCTTAAGAAATTT+TGG | - | chr1.3:63940218-63940237 | MS.gene20330:CDS | 25.0% |
!! | AATTTGGCAAACTTTGATTT+GGG | - | chr1.3:63939429-63939448 | MS.gene20330:intron | 25.0% |
!!! | AAAGTATTTTTCAAGCATTG+AGG | + | chr1.3:63940262-63940281 | None:intergenic | 25.0% |
!!! | AATTCAATTAAAAGAGTACC+TGG | + | chr1.3:63939710-63939729 | None:intergenic | 25.0% |
AAGTCCACAAGTTATATTTG+AGG | - | chr1.3:63940048-63940067 | MS.gene20330:CDS | 30.0% | |
AGTCATAAGTTCTTCATTTG+TGG | + | chr1.3:63940314-63940333 | None:intergenic | 30.0% | |
ATTTCTTAAGGTCTACTTGA+TGG | + | chr1.3:63940216-63940235 | None:intergenic | 30.0% | |
GAATTTGGCAAACTTTGATT+TGG | - | chr1.3:63939428-63939447 | MS.gene20330:intron | 30.0% | |
GAGTTTGCCAAAATTTCTTA+AGG | + | chr1.3:63940228-63940247 | None:intergenic | 30.0% | |
TATAAAAAGGTTGTTCCATC+CGG | - | chr1.3:63939887-63939906 | MS.gene20330:CDS | 30.0% | |
TCTGGTATCAAAGAAAACAA+TGG | + | chr1.3:63938823-63938842 | None:intergenic | 30.0% | |
TCTTGAGAATTGTTGGAATT+TGG | - | chr1.3:63939413-63939432 | MS.gene20330:intron | 30.0% | |
TGATTTCTCTGATCCTAAAT+GGG | - | chr1.3:63939167-63939186 | MS.gene20330:intron | 30.0% | |
TGCTTGTGTTTAGAAATTGT+AGG | - | chr1.3:63939767-63939786 | MS.gene20330:CDS | 30.0% | |
TGTTTGCTCGTTTATATTAC+AGG | - | chr1.3:63940177-63940196 | MS.gene20330:CDS | 30.0% | |
TTGATTTCTCTGATCCTAAA+TGG | - | chr1.3:63939166-63939185 | MS.gene20330:intron | 30.0% | |
TTTCTTAAGGTCTACTTGAT+GGG | + | chr1.3:63940215-63940234 | None:intergenic | 30.0% | |
! | AGTTTTCATCGAAATTGATG+TGG | + | chr1.3:63938945-63938964 | None:intergenic | 30.0% |
! | ATTAAGTTGTCGAATGAAGA+TGG | - | chr1.3:63940376-63940395 | MS.gene20330:CDS | 30.0% |
! | CTTGAAAAATACTTTGAAGG+TGG | - | chr1.3:63940267-63940286 | MS.gene20330:CDS | 30.0% |
! | TCTTATGCAAGGAAAAGTTT+TGG | - | chr1.3:63940342-63940361 | MS.gene20330:CDS | 30.0% |
ACTGCAAACTGTTAGAATCT+TGG | + | chr1.3:63939679-63939698 | None:intergenic | 35.0% | |
ACTTGGATTAACAAGATTGG+TGG | - | chr1.3:63939461-63939480 | MS.gene20330:intron | 35.0% | |
AGCACTTGGATTAACAAGAT+TGG | - | chr1.3:63939458-63939477 | MS.gene20330:intron | 35.0% | |
AGTTTGCAGTTATTTACTCC+AGG | - | chr1.3:63939689-63939708 | MS.gene20330:CDS | 35.0% | |
ATCAATGTCTACCTCTTCTA+TGG | + | chr1.3:63939586-63939605 | None:intergenic | 35.0% | |
ATCGAAATTGATGTGGTCTT+CGG | + | chr1.3:63938938-63938957 | None:intergenic | 35.0% | |
ATTGCTGGAAAAACTCACAT+TGG | - | chr1.3:63940021-63940040 | MS.gene20330:CDS | 35.0% | |
ATTTCAAACCCTCAAACTTG+TGG | - | chr1.3:63939084-63939103 | MS.gene20330:intron | 35.0% | |
CTGACCTCAAATATAACTTG+TGG | + | chr1.3:63940055-63940074 | None:intergenic | 35.0% | |
GAACAAGTATCCTAAACAAC+TGG | - | chr1.3:63938896-63938915 | MS.gene20330:CDS | 35.0% | |
GCACTCAAAGATTTGTCTTT+GGG | - | chr1.3:63939321-63939340 | MS.gene20330:CDS | 35.0% | |
GTTTGAGTCTTGAGAATTGT+TGG | - | chr1.3:63939406-63939425 | MS.gene20330:intron | 35.0% | |
TCAAAGATTTGTCTTTGGGT+TGG | - | chr1.3:63939325-63939344 | MS.gene20330:CDS | 35.0% | |
TCAAATCCACAAAGCTCATA+GGG | + | chr1.3:63939980-63939999 | None:intergenic | 35.0% | |
TGCACTCAAAGATTTGTCTT+TGG | - | chr1.3:63939320-63939339 | MS.gene20330:CDS | 35.0% | |
TTCAAATCCACAAAGCTCAT+AGG | + | chr1.3:63939981-63940000 | None:intergenic | 35.0% | |
TTCTTAAGGTCTACTTGATG+GGG | + | chr1.3:63940214-63940233 | None:intergenic | 35.0% | |
TTGAAGGTGGTAGAAGTAAT+CGG | - | chr1.3:63940280-63940299 | MS.gene20330:CDS | 35.0% | |
TTTCAAACCCTCAAACTTGT+GGG | - | chr1.3:63939085-63939104 | MS.gene20330:intron | 35.0% | |
! | AATGTGAGTTTTTCCAGCAA+TGG | + | chr1.3:63940022-63940041 | None:intergenic | 35.0% |
! | ATGTGAGTTTTTCCAGCAAT+GGG | + | chr1.3:63940021-63940040 | None:intergenic | 35.0% |
!! | ACTTGTTGCTTTCTTATGCA+AGG | - | chr1.3:63940331-63940350 | MS.gene20330:CDS | 35.0% |
AAATGTAAGGGCCATAGAAG+AGG | - | chr1.3:63939572-63939591 | MS.gene20330:intron | 40.0% | |
ATTGCAAGACGAAGTGATTC+TGG | + | chr1.3:63938841-63938860 | None:intergenic | 40.0% | |
ATTGTTTCCCCACAAGTTTG+AGG | + | chr1.3:63939096-63939115 | None:intergenic | 40.0% | |
CGCAAATTCTTTGAACGCTT+TGG | + | chr1.3:63940448-63940467 | None:intergenic | 40.0% | |
CTAAAAGTTGTGCACATCCA+CGG | + | chr1.3:63940417-63940436 | None:intergenic | 40.0% | |
GAATCAGATTTCCATGAACG+TGG | - | chr1.3:63939615-63939634 | MS.gene20330:CDS | 40.0% | |
GAGAAAACTTGTCGATGTCA+CGG | + | chr1.3:63939059-63939078 | None:intergenic | 40.0% | |
GCAAACTGTTAGAATCTTGG+CGG | + | chr1.3:63939676-63939695 | None:intergenic | 40.0% | |
GTTGTCGAATGAAGATGGTA+AGG | - | chr1.3:63940381-63940400 | MS.gene20330:CDS | 40.0% | |
TAGGATACTTGTTCTCCTTG+CGG | + | chr1.3:63938890-63938909 | None:intergenic | 40.0% | |
TTCAAACCCTCAAACTTGTG+GGG | - | chr1.3:63939086-63939105 | MS.gene20330:intron | 40.0% | |
TTGTTTCCCCACAAGTTTGA+GGG | + | chr1.3:63939095-63939114 | None:intergenic | 40.0% | |
!! | TCATCGACTTCATCACAAAC+TGG | - | chr1.3:63939016-63939035 | MS.gene20330:CDS | 40.0% |
AACTGTTAGAATCTTGGCGG+CGG | + | chr1.3:63939673-63939692 | None:intergenic | 45.0% | |
AGAGTTCATTGCCACGTTCA+TGG | + | chr1.3:63939629-63939648 | None:intergenic | 45.0% | |
ATGCATCCCTATGAGCTTTG+TGG | - | chr1.3:63939971-63939990 | MS.gene20330:CDS | 45.0% | |
CCAACGCAGGTTTATCAACT+CGG | - | chr1.3:63939231-63939250 | MS.gene20330:CDS | 45.0% | |
TGTTCCATCCGGAGATGAAT+CGG | - | chr1.3:63939898-63939917 | MS.gene20330:CDS | 45.0% | |
! | GATAAACCTGCGTTGGCAAT+TGG | + | chr1.3:63939227-63939246 | None:intergenic | 45.0% |
! | GATTTGGGAGATGAAGCACT+TGG | - | chr1.3:63939444-63939463 | MS.gene20330:intron | 45.0% |
!!! | GTTGCTTTTGCGACACAACA+GGG | - | chr1.3:63939126-63939145 | MS.gene20330:intron | 45.0% |
!!! | TGTTGCTTTTGCGACACAAC+AGG | - | chr1.3:63939125-63939144 | MS.gene20330:intron | 45.0% |
GTTGTTCCAATTGCCAACGC+AGG | - | chr1.3:63939218-63939237 | MS.gene20330:CDS | 50.0% | |
TGTTCTCCTTGCGGCTTCTT+CGG | + | chr1.3:63938881-63938900 | None:intergenic | 50.0% | |
!! | CCGAGTTGATAAACCTGCGT+TGG | + | chr1.3:63939234-63939253 | None:intergenic | 50.0% |
CATCCGCTCCGATTCATCTC+CGG | + | chr1.3:63939909-63939928 | None:intergenic | 55.0% | |
CATCCGGAGATGAATCGGAG+CGG | - | chr1.3:63939903-63939922 | MS.gene20330:CDS | 55.0% | |
GCTCAAAAGCTGCCCATTGC+TGG | - | chr1.3:63940006-63940025 | MS.gene20330:CDS | 55.0% | |
GGTAAGGTCGAATTTCGCCG+TGG | - | chr1.3:63940397-63940416 | MS.gene20330:CDS | 55.0% | |
TACCTTCCGAAGAAGCCGCA+AGG | - | chr1.3:63938872-63938891 | MS.gene20330:CDS | 55.0% | |
TGGCGGCGGAGAAATCATGA+AGG | + | chr1.3:63939659-63939678 | None:intergenic | 55.0% | |
TTGCGGCTTCTTCGGAAGGT+AGG | + | chr1.3:63938873-63938892 | None:intergenic | 55.0% | |
CGCTCCGATTCATCTCCGGA+TGG | + | chr1.3:63939905-63939924 | None:intergenic | 60.0% | |
CTCCTTGCGGCTTCTTCGGA+AGG | + | chr1.3:63938877-63938896 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 63938802 | 63940483 | 63938802 | ID=MS.gene20330 |
chr1.3 | mRNA | 63938802 | 63940483 | 63938802 | ID=MS.gene20330.t1;Parent=MS.gene20330 |
chr1.3 | exon | 63939575 | 63940483 | 63939575 | ID=MS.gene20330.t1.exon1;Parent=MS.gene20330.t1 |
chr1.3 | CDS | 63939575 | 63940483 | 63939575 | ID=cds.MS.gene20330.t1;Parent=MS.gene20330.t1 |
chr1.3 | exon | 63939216 | 63939389 | 63939216 | ID=MS.gene20330.t1.exon2;Parent=MS.gene20330.t1 |
chr1.3 | CDS | 63939216 | 63939389 | 63939216 | ID=cds.MS.gene20330.t1;Parent=MS.gene20330.t1 |
chr1.3 | exon | 63938802 | 63939086 | 63938802 | ID=MS.gene20330.t1.exon3;Parent=MS.gene20330.t1 |
chr1.3 | CDS | 63938802 | 63939086 | 63938802 | ID=cds.MS.gene20330.t1;Parent=MS.gene20330.t1 |
Gene Sequence |
Protein sequence |