AlfalfaGEDB | MS.gene74906

M. sativa cultivar XinJiangDaYe / MS.gene74906

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0005488 GO:0043565 GO:0097159 GO:1901363 GO:1990837
PFAM: PF03479.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74906.t1	AFK41919.1	91.3	311	20	3	1	310	1	305	5.80E-120	440.7

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74906.t1	Q8GWQ2	46.6	320	122	8	1	310	1	281	1.8e-53	211.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74906.t1	G7I674	92.3	311	17	3	1	310	1	305	4.2e-120	440.7

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene74906	-0.82449	7.85E-54	-1.69E-46
MS.gene049171	MS.gene74906	-0.871445	6.80E-67	-1.69E-46
MS.gene049217	MS.gene74906	-0.851482	8.63E-61	-1.69E-46
MS.gene049222	MS.gene74906	-0.878432	2.82E-69	-1.69E-46
MS.gene049232	MS.gene74906	-0.826991	2.00E-54	-1.69E-46
MS.gene049281	MS.gene74906	0.827323	1.67E-54	-1.69E-46
MS.gene049285	MS.gene74906	-0.868946	4.47E-66	-1.69E-46
MS.gene049320	MS.gene74906	-0.860094	2.62E-63	-1.69E-46
MS.gene049609	MS.gene74906	-0.85436	1.30E-61	-1.69E-46
MS.gene049611	MS.gene74906	0.832034	1.19E-55	-1.69E-46

Showing 1 to 10 of 211 entries

Previous1 2 3 4 5…22Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74906.t1	MTR_1g079810	96.785	311	3	3	1	310	1	305	0.0	590
MS.gene74906.t1	MTR_1g073860	52.000	325	106	10	1	310	33	322	4.25e-75	233
MS.gene74906.t1	MTR_1g044155	64.159	226	75	5	1	225	55	275	4.35e-75	234
MS.gene74906.t1	MTR_5g091630	62.963	162	60	0	74	235	45	206	2.79e-63	201
MS.gene74906.t1	MTR_5g011520	62.434	189	71	0	41	229	65	253	5.19e-63	202
MS.gene74906.t1	MTR_8g036060	71.084	166	48	0	76	241	86	251	4.43e-62	199
MS.gene74906.t1	MTR_3g068035	66.667	153	45	1	86	238	89	235	6.49e-60	194
MS.gene74906.t1	MTR_7g080980	62.500	152	57	0	85	236	66	217	2.88e-56	183
MS.gene74906.t1	MTR_4g098450	63.087	149	55	0	83	231	83	231	1.47e-52	174
MS.gene74906.t1	MTR_3g100470	43.049	223	117	5	24	242	26	242	1.23e-51	172

Showing 1 to 10 of 44 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74906.t1	AT3G04570	61.603	237	79	3	1	225	1	237	3.76e-79	243
MS.gene74906.t1	AT4G14465	50.313	320	110	10	1	310	1	281	6.21e-79	241
MS.gene74906.t1	AT2G35270	64.744	156	55	0	76	231	78	233	2.11e-62	199
MS.gene74906.t1	AT2G42940	61.078	167	60	1	76	237	53	219	1.49e-60	194
MS.gene74906.t1	AT3G60870	60.927	151	57	1	70	220	53	201	7.85e-58	187
MS.gene74906.t1	AT2G45430	67.251	171	51	3	72	238	85	254	1.69e-57	188
MS.gene74906.t1	AT4G22810	58.763	194	77	1	41	231	70	263	6.47e-57	187
MS.gene74906.t1	AT4G12050	58.854	192	78	1	41	231	83	274	9.57e-57	187
MS.gene74906.t1	AT3G55560	43.849	317	145	10	1	301	1	300	9.56e-53	175
MS.gene74906.t1	AT4G17800	63.226	155	56	1	85	239	91	244	2.97e-51	171

Showing 1 to 10 of 45 entries

Previous1 2 3 4 5Next

Find 121 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGGTGGTGGACCGGAC+CGG	0.521308	1.4:-64883734	MS.gene74906:CDS
AACAATGTTGGTGGTAATTT+GGG	0.370360	1.4:-64882923	MS.gene74906:CDS
AACAGCGACGAACACAAAGG+AGG	0.671516	1.4:-64883562	MS.gene74906:CDS
AACCTGATGGACGGCCTCTT+GGG	0.312471	1.4:+64883509	None:intergenic
AATTAGTATACTTAGTATGG+TGG	0.597096	1.4:+64882818	None:intergenic
AATTTGGGTGTTTCAAATGG+AGG	0.577814	1.4:-64882908	MS.gene74906:CDS
ACAAGTGGTTGGCGGTGGTG+TGG	0.585162	1.4:-64883167	MS.gene74906:CDS
ACATGGCTTCGTAGCGCGTT+AGG	0.352279	1.4:+64883442	None:intergenic
ACCATAGCTCCGGGACCTGT+AGG	0.618743	1.4:+64883298	None:intergenic
ACCATGACTAGCATGACCCC+AGG	0.526448	1.4:+64882844	None:intergenic

Showing 1 to 10 of 121 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GGTTTGACTATTTATCTTTC+TGG	-	chr1.4:64883369-64883388	MS.gene74906:CDS	30.0%
TTGACTATTTATCTTTCTGG+AGG	-	chr1.4:64883372-64883391	MS.gene74906:CDS	30.0%
TTTGATATACTCTCTTTGAC+CGG	-	chr1.4:64883309-64883328	MS.gene74906:CDS	30.0%
AATTTGGGTGTTTCAAATGG+AGG	-	chr1.4:64883660-64883679	MS.gene74906:CDS	35.0%
ATGAAGCTTATAATTCTCCC+TGG	-	chr1.4:64883706-64883725	MS.gene74906:CDS	35.0%
GGTAATTTGGGTGTTTCAAA+TGG	-	chr1.4:64883657-64883676	MS.gene74906:CDS	35.0%
TGAAGCTTATAATTCTCCCT+GGG	-	chr1.4:64883707-64883726	MS.gene74906:CDS	35.0%
ATTTGCATTCTAAGCGCAAG+TGG	-	chr1.4:64883219-64883238	MS.gene74906:CDS	40.0%
CAGTTAGCAATTGGATCTGT+TGG	-	chr1.4:64883594-64883613	MS.gene74906:CDS	40.0%
CTGTCGTTAACGTTTCTCTT+CGG	-	chr1.4:64883244-64883263	MS.gene74906:CDS	40.0%

Showing 1 to 10 of 123 entries

Previous1 2 3 4 5…13Next

Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	64882829	64883761	64882829	ID=MS.gene74906
chr1.4	mRNA	64882829	64883761	64882829	ID=MS.gene74906.t1;Parent=MS.gene74906
chr1.4	exon	64882829	64883761	64882829	ID=MS.gene74906.t1.exon1;Parent=MS.gene74906.t1
chr1.4	CDS	64882829	64883761	64882829	ID=cds.MS.gene74906.t1;Parent=MS.gene74906.t1

Gene Sequence

>MS.gene74906

ATGGCAAACAGGTGGTGGACCGGACCGGTTGGTCTAGGAGGGATGGACAACTCAGTAACCTCCTCTCCACTAGGAAAACCGGATCTGGGTTTCTCCATGAACCAAAGTGCTGTAACAGGAGTAAACAACATGAACAACAACAACAACAACAATGAAGAAGAAGAAGATGAGAAAGAAAACAGCGACGAACACAAAGGAGGTGGAATAGAAACAAACACCTCCACGCGCCGCCCAAGAGGCCGTCCATCAGGTTCAAAAAACAAACCAAAACCACCGATATTCATAACAAGAGATAGCCCTAACGCGCTACGAAGCCATGTCATGGAAGTAGCATCAGGAACTGATATATCAGATAGCATCGTTCAGTTTGCAAGAAAACGACAGAGAGGTATTTGCATTCTAAGCGCAAGTGGAACTGTCGTTAACGTTTCTCTTCGGCAACCTACAGGTCCCGGAGCTATGGTGGCGCTTCCTGGGAGATTTGATATACTCTCTTTGACCGGTTCAGTGCTTCCTGGACCTTCACCGCCGGGAGCTACTGGTTTGACTATTTATCTTTCTGGAGGACAAGGACAAGTGGTTGGCGGTGGTGTGGTTGGTCCACTTGTGGCGGCCGGGCCGGTTATGTTGATGGCGGCGACATTTTCGAATGCGACGTATGAGAGGCTGCCGGTTGAGGATGGTGATGATCAGGAAGGGCATCAAGGTGGTGGTGGTGGTGGTGGTGGTGACGACGAGTCTCCGACGCGTGCCGCGGGGATGGGACAGTTAGCAATTGGATCTGTTGGAGAAGGTTCTTCAATTCCACCAGGCTATAACAATGTTGGTGGTAATTTGGGTGTTTCAAATGGAGGACAACAACAATTGTTGAATAATCATGAAGCTTATAATTCTCCCTGGGGTCATGCTAGTCATGGTAGACCACCATACTAA

Protein sequence

>MS.gene74906.t1

MANRWWTGPVGLGGMDNSVTSSPLGKPDLGFSMNQSAVTGVNNMNNNNNNNEEEEDEKENSDEHKGGGIETNTSTRRPRGRPSGSKNKPKPPIFITRDSPNALRSHVMEVASGTDISDSIVQFARKRQRGICILSASGTVVNVSLRQPTGPGAMVALPGRFDILSLTGSVLPGPSPPGATGLTIYLSGGQGQVVGGGVVGPLVAAGPVMLMAATFSNATYERLPVEDGDDQEGHQGGGGGGGGDDESPTRAAGMGQLAIGSVGEGSSIPPGYNNVGGNLGVSNGGQQQLLNNHEAYNSPWGHASHGRPPY