AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene74906


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74906.t1 MTR_1g079810 96.785 311 3 3 1 310 1 305 0.0 590
MS.gene74906.t1 MTR_1g073860 52.000 325 106 10 1 310 33 322 4.25e-75 233
MS.gene74906.t1 MTR_1g044155 64.159 226 75 5 1 225 55 275 4.35e-75 234
MS.gene74906.t1 MTR_5g091630 62.963 162 60 0 74 235 45 206 2.79e-63 201
MS.gene74906.t1 MTR_5g011520 62.434 189 71 0 41 229 65 253 5.19e-63 202
MS.gene74906.t1 MTR_8g036060 71.084 166 48 0 76 241 86 251 4.43e-62 199
MS.gene74906.t1 MTR_3g068035 66.667 153 45 1 86 238 89 235 6.49e-60 194
MS.gene74906.t1 MTR_7g080980 62.500 152 57 0 85 236 66 217 2.88e-56 183
MS.gene74906.t1 MTR_4g098450 63.087 149 55 0 83 231 83 231 1.47e-52 174
MS.gene74906.t1 MTR_3g100470 43.049 223 117 5 24 242 26 242 1.23e-51 172
MS.gene74906.t1 MTR_5g080580 60.452 177 68 1 49 225 64 238 4.43e-51 171
MS.gene74906.t1 MTR_5g066020 43.103 174 89 4 85 253 60 228 4.27e-39 138
MS.gene74906.t1 MTR_5g089600 33.951 162 96 3 73 223 74 235 1.79e-24 99.4
MS.gene74906.t1 MTR_4g057487 32.941 170 104 2 73 232 14 183 3.57e-24 98.6
MS.gene74906.t1 MTR_5g010330 36.207 174 98 5 71 232 99 271 3.39e-23 97.8
MS.gene74906.t1 MTR_1g079780 41.912 136 75 2 85 216 88 223 9.77e-23 96.7
MS.gene74906.t1 MTR_4g057525 31.176 170 107 2 69 228 29 198 2.20e-21 91.3
MS.gene74906.t1 MTR_7g116320 46.903 113 60 0 103 215 143 255 2.00e-20 90.9
MS.gene74906.t1 MTR_1g073870 43.791 153 39 4 71 223 47 152 2.02e-20 88.2
MS.gene74906.t1 MTR_1g053685 30.952 168 107 1 73 231 82 249 5.84e-20 88.2
MS.gene74906.t1 MTR_1g061530 44.348 115 58 3 106 215 144 257 1.47e-19 88.2
MS.gene74906.t1 MTR_7g116320 44.800 125 65 1 103 223 143 267 2.00e-19 86.7
MS.gene74906.t1 MTR_1g032910 32.203 177 104 4 70 232 95 269 4.87e-19 85.9
MS.gene74906.t1 MTR_6g061670 39.655 116 67 1 103 215 130 245 2.69e-18 84.0
MS.gene74906.t1 MTR_7g077120 37.297 185 97 5 68 236 119 300 2.94e-18 84.3
MS.gene74906.t1 MTR_6g061670 39.655 116 67 1 103 215 125 240 3.62e-18 83.6
MS.gene74906.t1 MTR_5g089700 30.128 156 100 3 74 220 73 228 7.37e-17 78.6
MS.gene74906.t1 MTR_5g089090 32.515 163 98 2 69 222 21 180 9.85e-17 77.8
MS.gene74906.t1 MTR_1g076710 41.379 116 64 2 103 215 134 248 8.03e-16 77.4
MS.gene74906.t1 MTR_8g036160 41.228 114 63 1 106 215 145 258 1.78e-15 76.3
MS.gene74906.t1 MTR_4g055813 35.156 128 81 2 102 227 18 145 2.02e-15 75.5
MS.gene74906.t1 MTR_4g055803 37.008 127 68 3 106 223 128 251 6.82e-15 75.1
MS.gene74906.t1 MTR_8g098390 32.000 150 91 4 94 234 157 304 1.11e-14 73.9
MS.gene74906.t1 MTR_7g074935 47.761 67 35 0 106 172 130 196 1.34e-14 73.6
MS.gene74906.t1 MTR_4g098460 33.553 152 76 5 76 215 57 195 1.47e-14 72.8
MS.gene74906.t1 MTR_8g031100 37.576 165 95 3 76 232 125 289 2.88e-14 72.8
MS.gene74906.t1 MTR_4g069110 36.842 95 60 0 74 168 32 126 7.01e-14 68.9
MS.gene74906.t1 MTR_8g078930 32.593 135 81 3 107 232 5 138 1.22e-13 68.2
MS.gene74906.t1 MTR_4g055833 38.211 123 64 3 102 215 121 240 1.82e-13 70.5
MS.gene74906.t1 MTR_5g011620 33.945 109 70 1 107 215 119 225 3.53e-13 70.5
MS.gene74906.t1 MTR_5g011610 33.333 117 75 2 107 222 62 176 1.47e-12 67.8
MS.gene74906.t1 MTR_4g098460 32.484 157 76 6 76 215 57 200 1.97e-12 67.0
MS.gene74906.t1 MTR_5g011680 32.258 124 77 2 106 222 145 268 5.45e-12 65.5
MS.gene74906.t1 MTR_4g101990 40.299 67 40 0 106 172 147 213 2.25e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74906.t1 AT3G04570 61.603 237 79 3 1 225 1 237 3.76e-79 243
MS.gene74906.t1 AT4G14465 50.313 320 110 10 1 310 1 281 6.21e-79 241
MS.gene74906.t1 AT2G35270 64.744 156 55 0 76 231 78 233 2.11e-62 199
MS.gene74906.t1 AT2G42940 61.078 167 60 1 76 237 53 219 1.49e-60 194
MS.gene74906.t1 AT3G60870 60.927 151 57 1 70 220 53 201 7.85e-58 187
MS.gene74906.t1 AT2G45430 67.251 171 51 3 72 238 85 254 1.69e-57 188
MS.gene74906.t1 AT4G22810 58.763 194 77 1 41 231 70 263 6.47e-57 187
MS.gene74906.t1 AT4G12050 58.854 192 78 1 41 231 83 274 9.57e-57 187
MS.gene74906.t1 AT3G55560 43.849 317 145 10 1 301 1 300 9.56e-53 175
MS.gene74906.t1 AT4G17800 63.226 155 56 1 85 239 91 244 2.97e-51 171
MS.gene74906.t1 AT4G35390 57.297 185 76 2 42 223 28 212 6.65e-50 167
MS.gene74906.t1 AT5G49700 46.512 172 82 3 75 239 55 223 1.05e-49 166
MS.gene74906.t1 AT1G20900 55.497 191 70 2 50 225 54 244 9.86e-49 165
MS.gene74906.t1 AT1G14490 42.857 182 88 4 77 244 6 185 2.84e-39 137
MS.gene74906.t1 AT1G14490 42.857 182 88 4 77 244 25 204 4.14e-39 137
MS.gene74906.t1 AT4G25320 44.248 113 60 1 106 215 169 281 1.63e-21 94.4
MS.gene74906.t1 AT5G51590 43.363 113 61 1 106 215 181 293 2.03e-21 94.0
MS.gene74906.t1 AT5G62260 39.516 124 72 1 103 223 160 283 2.45e-21 92.0
MS.gene74906.t1 AT1G63470 39.726 146 81 3 76 215 147 291 4.28e-21 92.8
MS.gene74906.t1 AT4G12080 41.739 115 60 2 106 215 173 285 5.73e-21 92.0
MS.gene74906.t1 AT3G04590 32.093 215 116 5 106 308 174 370 9.13e-21 92.0
MS.gene74906.t1 AT5G62260 40.517 116 66 1 103 215 160 275 4.68e-20 90.1
MS.gene74906.t1 AT5G62260 40.517 116 66 1 103 215 160 275 4.68e-20 90.1
MS.gene74906.t1 AT3G04590 40.000 110 66 0 106 215 174 283 5.87e-20 88.6
MS.gene74906.t1 AT2G45850 35.948 153 92 3 69 215 125 277 1.99e-19 87.8
MS.gene74906.t1 AT2G45850 35.948 153 92 3 69 215 125 277 1.99e-19 87.8
MS.gene74906.t1 AT2G45850 36.364 154 92 3 69 216 125 278 4.48e-19 85.5
MS.gene74906.t1 AT4G17950 40.690 145 79 3 76 215 196 338 1.67e-18 85.9
MS.gene74906.t1 AT2G33620 38.028 142 84 3 77 215 138 278 4.76e-18 84.0
MS.gene74906.t1 AT2G33620 38.028 142 84 3 77 215 138 278 4.76e-18 84.0
MS.gene74906.t1 AT2G33620 38.028 142 84 3 77 215 138 278 4.76e-18 84.0
MS.gene74906.t1 AT2G33620 38.028 142 84 3 77 215 138 278 4.76e-18 84.0
MS.gene74906.t1 AT4G00200 39.850 133 66 2 106 235 126 247 1.58e-14 73.2
MS.gene74906.t1 AT4G00200 39.850 133 66 2 106 235 126 247 1.58e-14 73.2
MS.gene74906.t1 AT1G63480 32.192 146 92 3 76 215 130 274 4.66e-14 72.4
MS.gene74906.t1 AT1G63480 32.192 146 92 3 76 215 130 274 4.66e-14 72.4
MS.gene74906.t1 AT1G63480 32.192 146 92 3 76 215 124 268 5.29e-14 72.0
MS.gene74906.t1 AT1G63480 32.192 146 92 3 76 215 124 268 5.29e-14 72.0
MS.gene74906.t1 AT1G63480 32.192 146 92 3 76 215 124 268 5.29e-14 72.0
MS.gene74906.t1 AT1G63480 32.192 146 92 3 76 215 124 268 5.29e-14 72.0
MS.gene74906.t1 AT1G63480 32.192 146 92 3 76 215 124 268 5.29e-14 72.0
MS.gene74906.t1 AT5G46640 43.299 97 53 1 75 171 154 248 2.60e-13 70.1
MS.gene74906.t1 AT3G61310 34.459 148 91 3 74 215 132 279 2.82e-12 67.0
MS.gene74906.t1 AT4G22770 39.823 113 65 1 106 215 153 265 3.81e-12 66.6
MS.gene74906.t1 AT4G22770 39.823 113 65 1 106 215 153 265 3.81e-12 66.6

Find 121 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTTGACTATTTATCTTTC+TGG 0.085538 1.4:-64883199 MS.gene74906:CDS
GGAGCTATGGTGGCGCTTCC+TGG 0.123030 1.4:-64883286 MS.gene74906:CDS
TAACAATGTTGGTGGTAATT+TGG 0.176970 1.4:-64882924 MS.gene74906:CDS
GGGCATCAAGGTGGTGGTGG+TGG 0.274335 1.4:-64883043 MS.gene74906:CDS
GTTAATTAGTATACTTAGTA+TGG 0.281421 1.4:+64882815 None:intergenic
CATCAAGGTGGTGGTGGTGG+TGG 0.310580 1.4:-64883040 MS.gene74906:CDS
TGTTACAGCACTTTGGTTCA+TGG 0.311013 1.4:+64883645 None:intergenic
AACCTGATGGACGGCCTCTT+GGG 0.312471 1.4:+64883509 None:intergenic
GTTATGAATATCGGTGGTTT+TGG 0.313396 1.4:+64883475 None:intergenic
GGCCGGGCCGGTTATGTTGA+TGG 0.324168 1.4:-64883128 MS.gene74906:CDS
TCCACTAGGAAAACCGGATC+TGG 0.327318 1.4:-64883674 MS.gene74906:CDS
GAACCTGATGGACGGCCTCT+TGG 0.345631 1.4:+64883508 None:intergenic
ACATGGCTTCGTAGCGCGTT+AGG 0.352279 1.4:+64883442 None:intergenic
TTGACCGGTTCAGTGCTTCC+TGG 0.357484 1.4:-64883244 MS.gene74906:CDS
AACAATGTTGGTGGTAATTT+GGG 0.370360 1.4:-64882923 MS.gene74906:CDS
CCTTCACCGCCGGGAGCTAC+TGG 0.381049 1.4:-64883220 MS.gene74906:CDS
GGTAATTTGGGTGTTTCAAA+TGG 0.389870 1.4:-64882911 MS.gene74906:CDS
CTATCTCTTGTTATGAATAT+CGG 0.390991 1.4:+64883466 None:intergenic
TCCACTTGTGGCGGCCGGGC+CGG 0.400817 1.4:-64883140 MS.gene74906:CDS
GTTGGTCCACTTGTGGCGGC+CGG 0.404963 1.4:-64883145 MS.gene74906:CDS
ATGAACCAAAGTGCTGTAAC+AGG 0.409806 1.4:-64883643 MS.gene74906:CDS
TGGACCGGACCGGTTGGTCT+AGG 0.409931 1.4:-64883724 MS.gene74906:CDS
CGCCCAAGAGGCCGTCCATC+AGG 0.416707 1.4:-64883511 MS.gene74906:CDS
TCCGACGCGTGCCGCGGGGA+TGG 0.423656 1.4:-64882999 MS.gene74906:CDS
CAGTTAGCAATTGGATCTGT+TGG 0.425855 1.4:-64882974 MS.gene74906:CDS
GAGCTATGGTGGCGCTTCCT+GGG 0.429894 1.4:-64883285 MS.gene74906:CDS
GAGTCTCCGACGCGTGCCGC+GGG 0.430495 1.4:-64883004 MS.gene74906:CDS
CTCCTCTCCACTAGGAAAAC+CGG 0.439999 1.4:-64883680 MS.gene74906:CDS
ACTCAACTTTGATGGCAAAC+AGG 0.443330 1.4:-64883750 None:intergenic
CCGACGCGTGCCGCGGGGAT+GGG 0.452814 1.4:-64882998 MS.gene74906:CDS
AGGAAGCGCCACCATAGCTC+CGG 0.468113 1.4:+64883288 None:intergenic
GTGGTTGGCGGTGGTGTGGT+TGG 0.473855 1.4:-64883163 MS.gene74906:CDS
GTATGAGAGGCTGCCGGTTG+AGG 0.473968 1.4:-64883083 MS.gene74906:CDS
GGGATGGGACAGTTAGCAAT+TGG 0.474463 1.4:-64882983 MS.gene74906:CDS
GAAGGGCATCAAGGTGGTGG+TGG 0.477044 1.4:-64883046 MS.gene74906:CDS
CCCTCCTAGACCAACCGGTC+CGG 0.477578 1.4:+64883720 None:intergenic
CTGTCGTTAACGTTTCTCTT+CGG 0.480165 1.4:-64883324 MS.gene74906:CDS
GCTTCCTGGACCTTCACCGC+CGG 0.480251 1.4:-64883230 MS.gene74906:CDS
TCCATCCCTCCTAGACCAAC+CGG 0.482993 1.4:+64883715 None:intergenic
GTTTCTCTTCGGCAACCTAC+AGG 0.485903 1.4:-64883313 MS.gene74906:CDS
CTTCCTGGACCTTCACCGCC+GGG 0.487921 1.4:-64883229 MS.gene74906:CDS
TGATCATCACCATCCTCAAC+CGG 0.488150 1.4:+64883070 None:intergenic
GTCGCCGCCATCAACATAAC+CGG 0.488771 1.4:+64883121 None:intergenic
ACCTACAGGTCCCGGAGCTA+TGG 0.490105 1.4:-64883299 MS.gene74906:CDS
CCAGTAGCTCCCGGCGGTGA+AGG 0.497293 1.4:+64883220 None:intergenic
AGGTCCAGGAAGCACTGAAC+CGG 0.501544 1.4:+64883240 None:intergenic
ATGAAGCTTATAATTCTCCC+TGG 0.502086 1.4:-64882862 MS.gene74906:CDS
TTGGTCCACTTGTGGCGGCC+GGG 0.506396 1.4:-64883144 MS.gene74906:CDS
TTCATGGAGAAACCCAGATC+CGG 0.506944 1.4:+64883661 None:intergenic
CAGGAAGGGCATCAAGGTGG+TGG 0.509483 1.4:-64883049 MS.gene74906:CDS
TGAAGCTTATAATTCTCCCT+GGG 0.512515 1.4:-64882861 MS.gene74906:CDS
CCCATCCCCGCGGCACGCGT+CGG 0.513325 1.4:+64882998 None:intergenic
CATGGCTTCGTAGCGCGTTA+GGG 0.516021 1.4:+64883443 None:intergenic
CCCTGGGGTCATGCTAGTCA+TGG 0.516025 1.4:-64882845 MS.gene74906:CDS
GCTCCCGGCGGTGAAGGTCC+AGG 0.516377 1.4:+64883226 None:intergenic
ACCGGCCCGGCCGCCACAAG+TGG 0.517030 1.4:+64883139 None:intergenic
CCACCAACATTGTTATAGCC+TGG 0.521278 1.4:+64882932 None:intergenic
AAACAGGTGGTGGACCGGAC+CGG 0.521308 1.4:-64883734 MS.gene74906:CDS
CTTTGATGGCAAACAGGTGG+TGG 0.523292 1.4:-64883744 None:intergenic
ACCTCCACGCGCCGCCCAAG+AGG 0.524400 1.4:-64883523 MS.gene74906:CDS
GCAATTGGATCTGTTGGAGA+AGG 0.525138 1.4:-64882968 MS.gene74906:CDS
CGAGTCTCCGACGCGTGCCG+CGG 0.526236 1.4:-64883005 MS.gene74906:CDS
TTACTCCTGTTACAGCACTT+TGG 0.526257 1.4:+64883638 None:intergenic
ACCATGACTAGCATGACCCC+AGG 0.526448 1.4:+64882844 None:intergenic
CGCCATCAACATAACCGGCC+CGG 0.529330 1.4:+64883126 None:intergenic
GGTTGAGGATGGTGATGATC+AGG 0.530058 1.4:-64883068 MS.gene74906:CDS
ACGGCCTCTTGGGCGGCGCG+TGG 0.532452 1.4:+64883519 None:intergenic
CATGTCATGGAAGTAGCATC+AGG 0.533990 1.4:-64883424 MS.gene74906:CDS
TTTGATATACTCTCTTTGAC+CGG 0.534621 1.4:-64883259 MS.gene74906:CDS
GCCTCTTGGGCGGCGCGTGG+AGG 0.535225 1.4:+64883522 None:intergenic
CTGATGCTACTTCCATGACA+TGG 0.535449 1.4:+64883425 None:intergenic
CTTCGGCAACCTACAGGTCC+CGG 0.535710 1.4:-64883307 MS.gene74906:CDS
CGCGCTACGAAGCCATGTCA+TGG 0.542213 1.4:-64883437 MS.gene74906:CDS
ACCGGACCGGTTGGTCTAGG+AGG 0.542357 1.4:-64883721 MS.gene74906:CDS
GGAAGCGCCACCATAGCTCC+GGG 0.544398 1.4:+64883289 None:intergenic
TTTCGAATGCGACGTATGAG+AGG 0.546898 1.4:-64883096 MS.gene74906:CDS
TGGTGTGGTTGGTCCACTTG+TGG 0.553800 1.4:-64883152 MS.gene74906:CDS
CCACTAGGAAAACCGGATCT+GGG 0.555591 1.4:-64883673 MS.gene74906:CDS
ATGGCAAACAGGTGGTGGAC+CGG 0.556090 1.4:-64883739 MS.gene74906:CDS
CAAGGACAAGTGGTTGGCGG+TGG 0.556749 1.4:-64883172 MS.gene74906:CDS
ATTTATCTTTCTGGAGGACA+AGG 0.556764 1.4:-64883190 MS.gene74906:CDS
ACCGGTTGGTCTAGGAGGGA+TGG 0.562112 1.4:-64883716 MS.gene74906:CDS
TACAGGTCCCGGAGCTATGG+TGG 0.562505 1.4:-64883296 MS.gene74906:CDS
CCGGACCGGTTGGTCTAGGA+GGG 0.566185 1.4:-64883720 MS.gene74906:CDS
CCAGGCTATAACAATGTTGG+TGG 0.566237 1.4:-64882932 MS.gene74906:CDS
TTGACTATTTATCTTTCTGG+AGG 0.567765 1.4:-64883196 MS.gene74906:CDS
CCACCAGGCTATAACAATGT+TGG 0.572328 1.4:-64882935 MS.gene74906:CDS
GGACAAGGACAAGTGGTTGG+CGG 0.574410 1.4:-64883175 MS.gene74906:CDS
AATTTGGGTGTTTCAAATGG+AGG 0.577814 1.4:-64882908 MS.gene74906:CDS
AGCGACGAACACAAAGGAGG+TGG 0.581244 1.4:-64883559 MS.gene74906:CDS
ACAAGTGGTTGGCGGTGGTG+TGG 0.585162 1.4:-64883167 MS.gene74906:CDS
GATGATCAGGAAGGGCATCA+AGG 0.592117 1.4:-64883055 MS.gene74906:CDS
TCAGTAACCTCCTCTCCACT+AGG 0.593822 1.4:-64883688 MS.gene74906:CDS
ATAGTCAAACCAGTAGCTCC+CGG 0.594640 1.4:+64883211 None:intergenic
GGAGGACAAGGACAAGTGGT+TGG 0.595598 1.4:-64883178 MS.gene74906:CDS
AATTAGTATACTTAGTATGG+TGG 0.597096 1.4:+64882818 None:intergenic
ATTTGCATTCTAAGCGCAAG+TGG 0.597435 1.4:-64883349 MS.gene74906:CDS
CTGATGGACGGCCTCTTGGG+CGG 0.597863 1.4:+64883512 None:intergenic
GAGAGGCTGCCGGTTGAGGA+TGG 0.598538 1.4:-64883079 MS.gene74906:CDS
TCTCTTGTTATGAATATCGG+TGG 0.603718 1.4:+64883469 None:intergenic
TTCTGGAGGACAAGGACAAG+TGG 0.603921 1.4:-64883182 MS.gene74906:CDS
ACCATAGCTCCGGGACCTGT+AGG 0.618743 1.4:+64883298 None:intergenic
AGGTGGTGGACCGGACCGGT+TGG 0.621643 1.4:-64883730 MS.gene74906:CDS
GAGAGTATATCAAATCTCCC+AGG 0.628363 1.4:+64883268 None:intergenic
TGTGGTTGGTCCACTTGTGG+CGG 0.637462 1.4:-64883149 MS.gene74906:CDS
GAAGGTTCTTCAATTCCACC+AGG 0.641251 1.4:-64882950 MS.gene74906:CDS
GAGGATGGTGATGATCAGGA+AGG 0.642087 1.4:-64883064 MS.gene74906:CDS
GAAAACAGCGACGAACACAA+AGG 0.642908 1.4:-64883565 MS.gene74906:CDS
AGGATGGTGATGATCAGGAA+GGG 0.650071 1.4:-64883063 MS.gene74906:CDS
AGTCTCCGACGCGTGCCGCG+GGG 0.661832 1.4:-64883003 MS.gene74906:CDS
AACAGCGACGAACACAAAGG+AGG 0.671516 1.4:-64883562 MS.gene74906:CDS
CAACTTTGATGGCAAACAGG+TGG 0.677591 1.4:-64883747 None:intergenic
TGCGACGTATGAGAGGCTGC+CGG 0.686290 1.4:-64883089 MS.gene74906:CDS
CCAACATTGTTATAGCCTGG+TGG 0.688924 1.4:+64882935 None:intergenic
CCATGACTAGCATGACCCCA+GGG 0.694474 1.4:+64882845 None:intergenic
CGGGCCGGTTATGTTGATGG+CGG 0.696514 1.4:-64883125 MS.gene74906:CDS
TGCTAACTGTCCCATCCCCG+CGG 0.697320 1.4:+64882988 None:intergenic
GATCAGGAAGGGCATCAAGG+TGG 0.707265 1.4:-64883052 MS.gene74906:CDS
TTTGCAAGAAAACGACAGAG+AGG 0.730654 1.4:-64883373 MS.gene74906:CDS
GAAGCTTATAATTCTCCCTG+GGG 0.741712 1.4:-64882860 MS.gene74906:CDS
GTCAAACCAGTAGCTCCCGG+CGG 0.770924 1.4:+64883214 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTATCTCTTGTTATGAATAT+CGG + chr1.4:64883105-64883124 None:intergenic 25.0%
GGTTTGACTATTTATCTTTC+TGG - chr1.4:64883369-64883388 MS.gene74906:CDS 30.0%
TTGACTATTTATCTTTCTGG+AGG - chr1.4:64883372-64883391 MS.gene74906:CDS 30.0%
TTTGATATACTCTCTTTGAC+CGG - chr1.4:64883309-64883328 MS.gene74906:CDS 30.0%
!! AACAATGTTGGTGGTAATTT+GGG - chr1.4:64883645-64883664 MS.gene74906:CDS 30.0%
!! TAACAATGTTGGTGGTAATT+TGG - chr1.4:64883644-64883663 MS.gene74906:CDS 30.0%
AATTTGGGTGTTTCAAATGG+AGG - chr1.4:64883660-64883679 MS.gene74906:CDS 35.0%
ATGAAGCTTATAATTCTCCC+TGG - chr1.4:64883706-64883725 MS.gene74906:CDS 35.0%
GGTAATTTGGGTGTTTCAAA+TGG - chr1.4:64883657-64883676 MS.gene74906:CDS 35.0%
TGAAGCTTATAATTCTCCCT+GGG - chr1.4:64883707-64883726 MS.gene74906:CDS 35.0%
! ATTTATCTTTCTGGAGGACA+AGG - chr1.4:64883378-64883397 MS.gene74906:CDS 35.0%
! GTTATGAATATCGGTGGTTT+TGG + chr1.4:64883096-64883115 None:intergenic 35.0%
! TCTCTTGTTATGAATATCGG+TGG + chr1.4:64883102-64883121 None:intergenic 35.0%
!!! GGTTTGTTTTTTGAACCTGA+TGG + chr1.4:64883075-64883094 None:intergenic 35.0%
!!! TGTTTTTTGAACCTGATGGA+CGG + chr1.4:64883071-64883090 None:intergenic 35.0%
ATTTGCATTCTAAGCGCAAG+TGG - chr1.4:64883219-64883238 MS.gene74906:CDS 40.0%
CAGTTAGCAATTGGATCTGT+TGG - chr1.4:64883594-64883613 MS.gene74906:CDS 40.0%
CTGTCGTTAACGTTTCTCTT+CGG - chr1.4:64883244-64883263 MS.gene74906:CDS 40.0%
GAAGCTTATAATTCTCCCTG+GGG - chr1.4:64883708-64883727 MS.gene74906:CDS 40.0%
TTACTCCTGTTACAGCACTT+TGG + chr1.4:64882933-64882952 None:intergenic 40.0%
TTTGCAAGAAAACGACAGAG+AGG - chr1.4:64883195-64883214 MS.gene74906:CDS 40.0%
! GAGAGTATATCAAATCTCCC+AGG + chr1.4:64883303-64883322 None:intergenic 40.0%
! TGTTACAGCACTTTGGTTCA+TGG + chr1.4:64882926-64882945 None:intergenic 40.0%
!! ATGAACCAAAGTGCTGTAAC+AGG - chr1.4:64882925-64882944 MS.gene74906:CDS 40.0%
ATAGTCAAACCAGTAGCTCC+CGG + chr1.4:64883360-64883379 None:intergenic 45.0%
CATGTCATGGAAGTAGCATC+AGG - chr1.4:64883144-64883163 MS.gene74906:CDS 45.0%
CCAACATTGTTATAGCCTGG+TGG + chr1.4:64883636-64883655 None:intergenic 45.0%
CCACCAACATTGTTATAGCC+TGG + chr1.4:64883639-64883658 None:intergenic 45.0%
CCACCAGGCTATAACAATGT+TGG - chr1.4:64883633-64883652 MS.gene74906:CDS 45.0%
CCAGGCTATAACAATGTTGG+TGG - chr1.4:64883636-64883655 MS.gene74906:CDS 45.0%
GAAAACAGCGACGAACACAA+AGG - chr1.4:64883003-64883022 MS.gene74906:CDS 45.0%
GAAGGTTCTTCAATTCCACC+AGG - chr1.4:64883618-64883637 MS.gene74906:CDS 45.0%
GCAATTGGATCTGTTGGAGA+AGG - chr1.4:64883600-64883619 MS.gene74906:CDS 45.0%
TGATCATCACCATCCTCAAC+CGG + chr1.4:64883501-64883520 None:intergenic 45.0%
TTCATGGAGAAACCCAGATC+CGG + chr1.4:64882910-64882929 None:intergenic 45.0%
TTTCGAATGCGACGTATGAG+AGG - chr1.4:64883472-64883491 MS.gene74906:CDS 45.0%
! AGGATGGTGATGATCAGGAA+GGG - chr1.4:64883505-64883524 MS.gene74906:CDS 45.0%
! CTGATGCTACTTCCATGACA+TGG + chr1.4:64883146-64883165 None:intergenic 45.0%
AACAGCGACGAACACAAAGG+AGG - chr1.4:64883006-64883025 MS.gene74906:CDS 50.0%
CCACTAGGAAAACCGGATCT+GGG - chr1.4:64882895-64882914 MS.gene74906:CDS 50.0%
CTCCTCTCCACTAGGAAAAC+CGG - chr1.4:64882888-64882907 MS.gene74906:CDS 50.0%
GGGATGGGACAGTTAGCAAT+TGG - chr1.4:64883585-64883604 MS.gene74906:CDS 50.0%
GTTTCTCTTCGGCAACCTAC+AGG - chr1.4:64883255-64883274 MS.gene74906:CDS 50.0%
TCAGTAACCTCCTCTCCACT+AGG - chr1.4:64882880-64882899 MS.gene74906:CDS 50.0%
TCCACTAGGAAAACCGGATC+TGG - chr1.4:64882894-64882913 MS.gene74906:CDS 50.0%
! ATCCGGTTTTCCTAGTGGAG+AGG + chr1.4:64882893-64882912 None:intergenic 50.0%
! GAGGATGGTGATGATCAGGA+AGG - chr1.4:64883504-64883523 MS.gene74906:CDS 50.0%
! GGTTGAGGATGGTGATGATC+AGG - chr1.4:64883500-64883519 MS.gene74906:CDS 50.0%
! TTCTGGAGGACAAGGACAAG+TGG - chr1.4:64883386-64883405 MS.gene74906:CDS 50.0%
!! GATGATCAGGAAGGGCATCA+AGG - chr1.4:64883513-64883532 MS.gene74906:CDS 50.0%
ACATGGCTTCGTAGCGCGTT+AGG + chr1.4:64883129-64883148 None:intergenic 55.0%
ACCATGACTAGCATGACCCC+AGG + chr1.4:64883727-64883746 None:intergenic 55.0%
AGCGACGAACACAAAGGAGG+TGG - chr1.4:64883009-64883028 MS.gene74906:CDS 55.0%
CATGGCTTCGTAGCGCGTTA+GGG + chr1.4:64883128-64883147 None:intergenic 55.0%
CCATGACTAGCATGACCCCA+GGG + chr1.4:64883726-64883745 None:intergenic 55.0%
GGACAAGGACAAGTGGTTGG+CGG - chr1.4:64883393-64883412 MS.gene74906:CDS 55.0%
GGAGGACAAGGACAAGTGGT+TGG - chr1.4:64883390-64883409 MS.gene74906:CDS 55.0%
GTCGCCGCCATCAACATAAC+CGG + chr1.4:64883450-64883469 None:intergenic 55.0%
TCCATCCCTCCTAGACCAAC+CGG + chr1.4:64882856-64882875 None:intergenic 55.0%
! AACCTGATGGACGGCCTCTT+GGG + chr1.4:64883062-64883081 None:intergenic 55.0%
! CCCAGATCCGGTTTTCCTAG+TGG + chr1.4:64882898-64882917 None:intergenic 55.0%
! CGGTTTTCCTAGTGGAGAGG+AGG + chr1.4:64882890-64882909 None:intergenic 55.0%
! TGGTGTGGTTGGTCCACTTG+TGG - chr1.4:64883416-64883435 MS.gene74906:CDS 55.0%
! TGTGGTTGGTCCACTTGTGG+CGG - chr1.4:64883419-64883438 MS.gene74906:CDS 55.0%
! TTGACCGGTTCAGTGCTTCC+TGG - chr1.4:64883324-64883343 MS.gene74906:CDS 55.0%
!! AGGTCCAGGAAGCACTGAAC+CGG + chr1.4:64883331-64883350 None:intergenic 55.0%
!! ATGGCAAACAGGTGGTGGAC+CGG - chr1.4:64882829-64882848 MS.gene74906:CDS 55.0%
!! GATCAGGAAGGGCATCAAGG+TGG - chr1.4:64883516-64883535 MS.gene74906:CDS 55.0%
ACAAGTGGTTGGCGGTGGTG+TGG - chr1.4:64883401-64883420 MS.gene74906:CDS 60.0%
ACCATAGCTCCGGGACCTGT+AGG + chr1.4:64883273-64883292 None:intergenic 60.0%
ACCTACAGGTCCCGGAGCTA+TGG - chr1.4:64883269-64883288 MS.gene74906:CDS 60.0%
CAAGGACAAGTGGTTGGCGG+TGG - chr1.4:64883396-64883415 MS.gene74906:CDS 60.0%
CCCTGGGGTCATGCTAGTCA+TGG - chr1.4:64883723-64883742 MS.gene74906:CDS 60.0%
CGCCATCAACATAACCGGCC+CGG + chr1.4:64883445-64883464 None:intergenic 60.0%
CGCGCTACGAAGCCATGTCA+TGG - chr1.4:64883131-64883150 MS.gene74906:CDS 60.0%
CTTCGGCAACCTACAGGTCC+CGG - chr1.4:64883261-64883280 MS.gene74906:CDS 60.0%
GTCAAACCAGTAGCTCCCGG+CGG + chr1.4:64883357-64883376 None:intergenic 60.0%
TACAGGTCCCGGAGCTATGG+TGG - chr1.4:64883272-64883291 MS.gene74906:CDS 60.0%
TGCGACGTATGAGAGGCTGC+CGG - chr1.4:64883479-64883498 MS.gene74906:CDS 60.0%
TGCTAACTGTCCCATCCCCG+CGG + chr1.4:64883583-64883602 None:intergenic 60.0%
! CGGGCCGGTTATGTTGATGG+CGG - chr1.4:64883443-64883462 MS.gene74906:CDS 60.0%
! GAACCTGATGGACGGCCTCT+TGG + chr1.4:64883063-64883082 None:intergenic 60.0%
! GAGCTATGGTGGCGCTTCCT+GGG - chr1.4:64883283-64883302 MS.gene74906:CDS 60.0%
! GTATGAGAGGCTGCCGGTTG+AGG - chr1.4:64883485-64883504 MS.gene74906:CDS 60.0%
!! AAACAGGTGGTGGACCGGAC+CGG - chr1.4:64882834-64882853 MS.gene74906:CDS 60.0%
!! ACCGGTTGGTCTAGGAGGGA+TGG - chr1.4:64882852-64882871 MS.gene74906:CDS 60.0%
!! AGGAAGCGCCACCATAGCTC+CGG + chr1.4:64883283-64883302 None:intergenic 60.0%
!! CAGGAAGGGCATCAAGGTGG+TGG - chr1.4:64883519-64883538 MS.gene74906:CDS 60.0%
!! CATCAAGGTGGTGGTGGTGG+TGG - chr1.4:64883528-64883547 MS.gene74906:CDS 60.0%
!! GAAGGGCATCAAGGTGGTGG+TGG - chr1.4:64883522-64883541 MS.gene74906:CDS 60.0%
CCCTCCTAGACCAACCGGTC+CGG + chr1.4:64882851-64882870 None:intergenic 65.0%
CTTCCTGGACCTTCACCGCC+GGG - chr1.4:64883339-64883358 MS.gene74906:CDS 65.0%
GCTTCCTGGACCTTCACCGC+CGG - chr1.4:64883338-64883357 MS.gene74906:CDS 65.0%
GGCCGGGCCGGTTATGTTGA+TGG - chr1.4:64883440-64883459 MS.gene74906:CDS 65.0%
GTGGTTGGCGGTGGTGTGGT+TGG - chr1.4:64883405-64883424 MS.gene74906:CDS 65.0%
GTTGGTCCACTTGTGGCGGC+CGG - chr1.4:64883423-64883442 MS.gene74906:CDS 65.0%
TTGGTCCACTTGTGGCGGCC+GGG - chr1.4:64883424-64883443 MS.gene74906:CDS 65.0%
! CTGATGGACGGCCTCTTGGG+CGG + chr1.4:64883059-64883078 None:intergenic 65.0%
! GAGAGGCTGCCGGTTGAGGA+TGG - chr1.4:64883489-64883508 MS.gene74906:CDS 65.0%
! GGAGCTATGGTGGCGCTTCC+TGG - chr1.4:64883282-64883301 MS.gene74906:CDS 65.0%
!! ACCGGACCGGTTGGTCTAGG+AGG - chr1.4:64882847-64882866 MS.gene74906:CDS 65.0%
!! CAAGGTGGTGGTGGTGGTGG+TGG - chr1.4:64883531-64883550 MS.gene74906:CDS 65.0%
!! CCGGACCGGTTGGTCTAGGA+GGG - chr1.4:64882848-64882867 MS.gene74906:CDS 65.0%
!! GGAAGCGCCACCATAGCTCC+GGG + chr1.4:64883282-64883301 None:intergenic 65.0%
!! GGGCATCAAGGTGGTGGTGG+TGG - chr1.4:64883525-64883544 MS.gene74906:CDS 65.0%
!! TGGACCGGACCGGTTGGTCT+AGG - chr1.4:64882844-64882863 MS.gene74906:CDS 65.0%
CCAGTAGCTCCCGGCGGTGA+AGG + chr1.4:64883351-64883370 None:intergenic 70.0%
CCTTCACCGCCGGGAGCTAC+TGG - chr1.4:64883348-64883367 MS.gene74906:CDS 70.0%
CGCCCAAGAGGCCGTCCATC+AGG - chr1.4:64883057-64883076 MS.gene74906:CDS 70.0%
!! AGGTGGTGGACCGGACCGGT+TGG - chr1.4:64882838-64882857 MS.gene74906:CDS 70.0%
!! GGTGGTGGTGGTGGTGGTGG+TGG - chr1.4:64883534-64883553 MS.gene74906:CDS 70.0%
ACCTCCACGCGCCGCCCAAG+AGG - chr1.4:64883045-64883064 MS.gene74906:CDS 75.0%
AGTCTCCGACGCGTGCCGCG+GGG - chr1.4:64883565-64883584 MS.gene74906:CDS 75.0%
CGAGTCTCCGACGCGTGCCG+CGG - chr1.4:64883563-64883582 MS.gene74906:CDS 75.0%
GAGTCTCCGACGCGTGCCGC+GGG - chr1.4:64883564-64883583 MS.gene74906:CDS 75.0%
GCTCCCGGCGGTGAAGGTCC+AGG + chr1.4:64883345-64883364 None:intergenic 75.0%
TCCACTTGTGGCGGCCGGGC+CGG - chr1.4:64883428-64883447 MS.gene74906:CDS 75.0%
! ACCGGCCCGGCCGCCACAAG+TGG + chr1.4:64883432-64883451 None:intergenic 80.0%
! ACGGCCTCTTGGGCGGCGCG+TGG + chr1.4:64883052-64883071 None:intergenic 80.0%
! CCCATCCCCGCGGCACGCGT+CGG + chr1.4:64883573-64883592 None:intergenic 80.0%
! CCGACGCGTGCCGCGGGGAT+GGG - chr1.4:64883570-64883589 MS.gene74906:CDS 80.0%
! GCCTCTTGGGCGGCGCGTGG+AGG + chr1.4:64883049-64883068 None:intergenic 80.0%
! TCCGACGCGTGCCGCGGGGA+TGG - chr1.4:64883569-64883588 MS.gene74906:CDS 80.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 64882829 64883761 64882829 ID=MS.gene74906
chr1.4 mRNA 64882829 64883761 64882829 ID=MS.gene74906.t1;Parent=MS.gene74906
chr1.4 exon 64882829 64883761 64882829 ID=MS.gene74906.t1.exon1;Parent=MS.gene74906.t1
chr1.4 CDS 64882829 64883761 64882829 ID=cds.MS.gene74906.t1;Parent=MS.gene74906.t1
Gene Sequence

>MS.gene74906

ATGGCAAACAGGTGGTGGACCGGACCGGTTGGTCTAGGAGGGATGGACAACTCAGTAACCTCCTCTCCACTAGGAAAACCGGATCTGGGTTTCTCCATGAACCAAAGTGCTGTAACAGGAGTAAACAACATGAACAACAACAACAACAACAATGAAGAAGAAGAAGATGAGAAAGAAAACAGCGACGAACACAAAGGAGGTGGAATAGAAACAAACACCTCCACGCGCCGCCCAAGAGGCCGTCCATCAGGTTCAAAAAACAAACCAAAACCACCGATATTCATAACAAGAGATAGCCCTAACGCGCTACGAAGCCATGTCATGGAAGTAGCATCAGGAACTGATATATCAGATAGCATCGTTCAGTTTGCAAGAAAACGACAGAGAGGTATTTGCATTCTAAGCGCAAGTGGAACTGTCGTTAACGTTTCTCTTCGGCAACCTACAGGTCCCGGAGCTATGGTGGCGCTTCCTGGGAGATTTGATATACTCTCTTTGACCGGTTCAGTGCTTCCTGGACCTTCACCGCCGGGAGCTACTGGTTTGACTATTTATCTTTCTGGAGGACAAGGACAAGTGGTTGGCGGTGGTGTGGTTGGTCCACTTGTGGCGGCCGGGCCGGTTATGTTGATGGCGGCGACATTTTCGAATGCGACGTATGAGAGGCTGCCGGTTGAGGATGGTGATGATCAGGAAGGGCATCAAGGTGGTGGTGGTGGTGGTGGTGGTGACGACGAGTCTCCGACGCGTGCCGCGGGGATGGGACAGTTAGCAATTGGATCTGTTGGAGAAGGTTCTTCAATTCCACCAGGCTATAACAATGTTGGTGGTAATTTGGGTGTTTCAAATGGAGGACAACAACAATTGTTGAATAATCATGAAGCTTATAATTCTCCCTGGGGTCATGCTAGTCATGGTAGACCACCATACTAA

Protein sequence

>MS.gene74906.t1

MANRWWTGPVGLGGMDNSVTSSPLGKPDLGFSMNQSAVTGVNNMNNNNNNNEEEEDEKENSDEHKGGGIETNTSTRRPRGRPSGSKNKPKPPIFITRDSPNALRSHVMEVASGTDISDSIVQFARKRQRGICILSASGTVVNVSLRQPTGPGAMVALPGRFDILSLTGSVLPGPSPPGATGLTIYLSGGQGQVVGGGVVGPLVAAGPVMLMAATFSNATYERLPVEDGDDQEGHQGGGGGGGGDDESPTRAAGMGQLAIGSVGEGSSIPPGYNNVGGNLGVSNGGQQQLLNNHEAYNSPWGHASHGRPPY