AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034131.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034131.01.T01 MTR_6g461650 96.522 115 4 0 43 157 12 126 2.99e-76 223
MsG0680034131.01.T01 MTR_5g011550 53.285 137 63 1 5 140 85 221 5.10e-47 152
MsG0680034131.01.T01 MTR_5g011550 52.577 97 46 0 5 101 85 181 1.26e-30 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034131.01.T01 AT4G25370 60.784 153 58 2 5 156 85 236 2.35e-62 192
MsG0680034131.01.T01 AT4G12060 58.784 148 59 2 5 150 93 240 1.90e-51 164

Find 43 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACGTGACTCATTTACTTCT+TGG 0.193512 6:-81355558 MsG0680034131.01.T01:CDS
CTCATTTACTTCTTGGAATT+TGG 0.207345 6:-81355551 MsG0680034131.01.T01:CDS
TGCTGTTTCAGCAATTTCTT+TGG 0.256036 6:+81355467 None:intergenic
AGAGCTTCGGTTCCTACTTT+AGG 0.268153 6:+81358121 None:intergenic
CGAAAGGTCTTGTCTGCTTT+AGG 0.302687 6:-81355507 MsG0680034131.01.T01:CDS
GCAAAATTCTTAAGAGCTAA+TGG 0.310722 6:-81356830 MsG0680034131.01.T01:CDS
GGCATATGCAATGGCGGAGT+TGG 0.395307 6:-81358164 MsG0680034131.01.T01:CDS
GTGGTCGGCAAGGGCTATAA+AGG 0.454223 6:-81358185 MsG0680034131.01.T01:CDS
AGGCTAGTGGTGATATTGAT+TGG 0.457256 6:-81355134 MsG0680034131.01.T01:CDS
TGGTTTAAGGTGGTCGGCAA+GGG 0.483961 6:-81358194 MsG0680034131.01.T01:CDS
GAACAAACATTAGAGATACT+TGG 0.494086 6:-81356785 MsG0680034131.01.T01:CDS
TTTGTTTGGTTTAAGGTGGT+CGG 0.498643 6:-81358200 MsG0680034131.01.T01:CDS
CACTTCATAAAGCCCTCGAT+TGG 0.501232 6:-81356712 MsG0680034131.01.T01:CDS
TTGGTTTAAGGTGGTCGGCA+AGG 0.507786 6:-81358195 MsG0680034131.01.T01:CDS
AATCCCCATGAGAAGAGCTT+CGG 0.510732 6:+81358108 None:intergenic
GGAACCGAAGCTCTTCTCAT+GGG 0.514916 6:-81358112 MsG0680034131.01.T01:CDS
AAACTTAAGTATCCTAAAGT+AGG 0.518801 6:-81358133 MsG0680034131.01.T01:CDS
CAAAGAAAGTACCACAGGGC+TGG 0.521979 6:+81356742 None:intergenic
AATTTGGTCACAAGAAGAAT+CGG 0.524470 6:-81355535 MsG0680034131.01.T01:CDS
CTTAATGAGACATCAAAGTC+AGG 0.528570 6:-81356686 MsG0680034131.01.T01:intron
AACTTGTATCGCTTTATCCC+CGG 0.534663 6:+81355083 None:intergenic
ACTTCATAAAGCCCTCGATT+GGG 0.536661 6:-81356711 MsG0680034131.01.T01:CDS
AACAAACATTAGAGATACTT+GGG 0.539478 6:-81356784 MsG0680034131.01.T01:CDS
TGATATAAAATGTAGGTGAA+GGG 0.544707 6:-81355587 MsG0680034131.01.T01:intron
TTATGTTTCTTGTAGGCTAG+TGG 0.544994 6:-81355147 MsG0680034131.01.T01:intron
CTCATTAAGTGCCCAATCGA+GGG 0.546784 6:+81356700 None:intergenic
TCAGTCAAAGAAAGTACCAC+AGG 0.556367 6:+81356737 None:intergenic
GATATAAAATGTAGGTGAAG+GGG 0.556811 6:-81355586 MsG0680034131.01.T01:intron
AGAAGAATCGGCAGGTCGAA+AGG 0.557152 6:-81355523 MsG0680034131.01.T01:CDS
CAATGGCGGAGTTGGAAACA+AGG 0.558511 6:-81358156 MsG0680034131.01.T01:CDS
CAATCGAGGGCTTTATGAAG+TGG 0.559203 6:+81356713 None:intergenic
TTTGACATGGAAATCTAAAG+AGG 0.570570 6:+81355033 None:intergenic
AGGAACCGAAGCTCTTCTCA+TGG 0.574875 6:-81358113 MsG0680034131.01.T01:CDS
GGCTATAAAGGCATATGCAA+TGG 0.582460 6:-81358173 MsG0680034131.01.T01:CDS
TGGTCACAAGAAGAATCGGC+AGG 0.599189 6:-81355531 MsG0680034131.01.T01:CDS
AGATACTTGGGAAATCTGAC+TGG 0.600934 6:-81356772 MsG0680034131.01.T01:CDS
TCTCATTAAGTGCCCAATCG+AGG 0.607236 6:+81356699 None:intergenic
TTGACATGGAAATCTAAAGA+GGG 0.630237 6:+81355034 None:intergenic
GAACCGAAGCTCTTCTCATG+GGG 0.645463 6:-81358111 MsG0680034131.01.T01:CDS
TATAAAGGCATATGCAATGG+CGG 0.665721 6:-81358170 MsG0680034131.01.T01:CDS
TAGTACAACAGTATTTGACA+TGG 0.674608 6:+81355020 None:intergenic
CAGTCAAAGAAAGTACCACA+GGG 0.683176 6:+81356738 None:intergenic
CTGGTACTACTCCAGCCCTG+TGG 0.699262 6:-81356753 MsG0680034131.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATTATTAAATCTTAAAAT+TGG - Chr6:81356034-81356053 MsG0680034131.01.T01:intron 10.0%
!! TATAAACACATAAATTTAAT+AGG - Chr6:81355406-81355425 MsG0680034131.01.T01:intron 10.0%
!! TATTGTAATGTTTAAAAAAT+CGG + Chr6:81357946-81357965 None:intergenic 10.0%
!!! ATTTTGACAAAAAAAAAAAT+GGG + Chr6:81356921-81356940 None:intergenic 10.0%
!!! CAAAACATTAAAATATATTT+TGG + Chr6:81355775-81355794 None:intergenic 10.0%
!!! TATTTTGACAAAAAAAAAAA+TGG + Chr6:81356922-81356941 None:intergenic 10.0%
!! GTTATTATGATATAAAATGT+AGG - Chr6:81357565-81357584 MsG0680034131.01.T01:intron 15.0%
!!! CAATAATACAATGTTTTATT+TGG - Chr6:81357735-81357754 MsG0680034131.01.T01:intron 15.0%
!!! TATTTGTTTTCATTGAAAAA+TGG - Chr6:81355482-81355501 MsG0680034131.01.T01:CDS 15.0%
!!! TCTTTTTTATACAAGTTTTT+TGG - Chr6:81358190-81358209 MsG0680034131.01.T01:CDS 15.0%
!! AAATGTACTAAATAGACAAT+AGG - Chr6:81357326-81357345 MsG0680034131.01.T01:intron 20.0%
!! AAGTTTGAATATTTGATTCT+AGG - Chr6:81356147-81356166 MsG0680034131.01.T01:intron 20.0%
!! ACATAACGAATCATATATTT+AGG - Chr6:81356870-81356889 MsG0680034131.01.T01:intron 20.0%
!! AGAATCAAATATTCAAACTT+GGG + Chr6:81356147-81356166 None:intergenic 20.0%
!! ATTTAATAGGTATATGCATT+TGG - Chr6:81355419-81355438 MsG0680034131.01.T01:intron 20.0%
!! TAATCTACTCAAATAACTAA+TGG + Chr6:81355543-81355562 None:intergenic 20.0%
!! TAATGTACAAACAAACAATA+GGG + Chr6:81357418-81357437 None:intergenic 20.0%
!! TAATTAAAACATGAACACAA+TGG + Chr6:81356619-81356638 None:intergenic 20.0%
!! TAGAATCAAATATTCAAACT+TGG + Chr6:81356148-81356167 None:intergenic 20.0%
!! TAGTTATTTGAGTAGATTAT+GGG - Chr6:81355544-81355563 MsG0680034131.01.T01:CDS 20.0%
!! TGCATTATTTATTTATGATC+TGG + Chr6:81357786-81357805 None:intergenic 20.0%
!! TTAATGTACAAACAAACAAT+AGG + Chr6:81357419-81357438 None:intergenic 20.0%
!! TTAGTTATTTGAGTAGATTA+TGG - Chr6:81355543-81355562 MsG0680034131.01.T01:CDS 20.0%
!! TTTAATAGGTATATGCATTT+GGG - Chr6:81355420-81355439 MsG0680034131.01.T01:intron 20.0%
!!! AATGTTTTATTTGGTTTCAT+TGG - Chr6:81357744-81357763 MsG0680034131.01.T01:intron 20.0%
!!! CAAACATGATTTTTTTTTTC+AGG + Chr6:81356739-81356758 None:intergenic 20.0%
! AAAAAAATGGGACAACAATT+TGG + Chr6:81356909-81356928 None:intergenic 25.0%
! AAACTTAAGTATCCTAAAGT+AGG - Chr6:81355026-81355045 MsG0680034131.01.T01:three_prime_UTR 25.0%
! AACAAACATTAGAGATACTT+GGG - Chr6:81356375-81356394 MsG0680034131.01.T01:intron 25.0%
! ACCTCAATGACTATAAAATA+TGG - Chr6:81357988-81358007 MsG0680034131.01.T01:intron 25.0%
! ATATGGTTTATGTTTCTTGT+AGG - Chr6:81358005-81358024 MsG0680034131.01.T01:intron 25.0%
! ATCAAAATAACACAACCAAA+AGG + Chr6:81355693-81355712 None:intergenic 25.0%
! ATGATATAAAATGTAGGTGA+AGG - Chr6:81357571-81357590 MsG0680034131.01.T01:intron 25.0%
! ATTATAATAGATAGTGAGCT+AGG - Chr6:81356117-81356136 MsG0680034131.01.T01:intron 25.0%
! TGATATAAAATGTAGGTGAA+GGG - Chr6:81357572-81357591 MsG0680034131.01.T01:intron 25.0%
! TGTATATATAGAACCAAGAA+TGG - Chr6:81355799-81355818 MsG0680034131.01.T01:intron 25.0%
! TTAAACCATTATGCAATAAG+TGG - Chr6:81355354-81355373 MsG0680034131.01.T01:intron 25.0%
! TTAGAGAAGAATTGAACAAT+AGG + Chr6:81357490-81357509 None:intergenic 25.0%
!! AAAGTTTAAAGTACTAAAGC+TGG + Chr6:81357160-81357179 None:intergenic 25.0%
!! ACCATATTTTATAGTCATTG+AGG + Chr6:81357992-81358011 None:intergenic 25.0%
!! AGTTTCTAGAAAAAAATCAC+AGG + Chr6:81355841-81355860 None:intergenic 25.0%
!! GAAAACCAATGTAATTTTGA+GGG + Chr6:81357447-81357466 None:intergenic 25.0%
!! GTTTCTAGAAAAAAATCACA+GGG + Chr6:81355840-81355859 None:intergenic 25.0%
!! TGTGTAAAGAGATTTTATAC+TGG - Chr6:81355312-81355331 MsG0680034131.01.T01:intron 25.0%
!!! AAAAGTGCTAATGTAAGTAT+TGG + Chr6:81355607-81355626 None:intergenic 25.0%
!!! GGCATGATTTTTAAAAACTT+TGG + Chr6:81356195-81356214 None:intergenic 25.0%
AATGAATCTAGCAGATCAAT+TGG + Chr6:81356558-81356577 None:intergenic 30.0%
AATTTGGTCACAAGAAGAAT+CGG - Chr6:81357624-81357643 MsG0680034131.01.T01:intron 30.0%
ATGAAACATAGACACAAACA+CGG + Chr6:81357245-81357264 None:intergenic 30.0%
ATGAATCTAGCAGATCAATT+GGG + Chr6:81356557-81356576 None:intergenic 30.0%
ATTGCCTAGTAAATCATGTA+GGG + Chr6:81355874-81355893 None:intergenic 30.0%
CACAAATTTCAACAACAGTT+TGG - Chr6:81356660-81356679 MsG0680034131.01.T01:intron 30.0%
CATGATTTACTAGGCAATAT+TGG - Chr6:81355876-81355895 MsG0680034131.01.T01:intron 30.0%
CTCATTTACTTCTTGGAATT+TGG - Chr6:81357608-81357627 MsG0680034131.01.T01:intron 30.0%
GAACAAACATTAGAGATACT+TGG - Chr6:81356374-81356393 MsG0680034131.01.T01:intron 30.0%
GATAACCACTTATTGCATAA+TGG + Chr6:81355362-81355381 None:intergenic 30.0%
GATATAAAATGTAGGTGAAG+GGG - Chr6:81357573-81357592 MsG0680034131.01.T01:intron 30.0%
GATTCGTTATGTTTAGTAGA+TGG + Chr6:81356862-81356881 None:intergenic 30.0%
GCAAAATTCTTAAGAGCTAA+TGG - Chr6:81356329-81356348 MsG0680034131.01.T01:intron 30.0%
TAGTACAACAGTATTTGACA+TGG + Chr6:81358142-81358161 None:intergenic 30.0%
TATATGCATTTGGGTACATA+TGG - Chr6:81355429-81355448 MsG0680034131.01.T01:intron 30.0%
TATTGCCTAGTAAATCATGT+AGG + Chr6:81355875-81355894 None:intergenic 30.0%
TCATAGGAAATGTATATCTC+AGG - Chr6:81357261-81357280 MsG0680034131.01.T01:intron 30.0%
TGTACTAAATAGACAATAGG+AGG - Chr6:81357329-81357348 MsG0680034131.01.T01:intron 30.0%
TGTGTTCAATGGATAACTAA+TGG - Chr6:81356790-81356809 MsG0680034131.01.T01:CDS 30.0%
TGTTTGTGTCTATGTTTCAT+AGG - Chr6:81357245-81357264 MsG0680034131.01.T01:intron 30.0%
TTGAAAAATGGAACTTGAGA+TGG - Chr6:81355494-81355513 MsG0680034131.01.T01:CDS 30.0%
TTGACATGGAAATCTAAAGA+GGG + Chr6:81358128-81358147 None:intergenic 30.0%
TTGTTCAAGTATGACATGAT+TGG + Chr6:81355273-81355292 None:intergenic 30.0%
TTTGACATGGAAATCTAAAG+AGG + Chr6:81358129-81358148 None:intergenic 30.0%
TTTGTTCATACCTTCCATAT+GGG - Chr6:81355937-81355956 MsG0680034131.01.T01:intron 30.0%
! AAAGAGATTTTATACTGGCA+GGG - Chr6:81355317-81355336 MsG0680034131.01.T01:intron 30.0%
! AGTAATGACGTTTAAAATCG+TGG - Chr6:81356762-81356781 MsG0680034131.01.T01:CDS 30.0%
! CGAAAACCAATGTAATTTTG+AGG + Chr6:81357448-81357467 None:intergenic 30.0%
! GTATAGTCAATTTTCTCTAG+AGG + Chr6:81358102-81358121 None:intergenic 30.0%
! GTCTCTAAGAAATGAGTTAT+GGG - Chr6:81356087-81356106 MsG0680034131.01.T01:intron 30.0%
! GTTCATTTGCTCTGAATTAT+TGG - Chr6:81355903-81355922 MsG0680034131.01.T01:intron 30.0%
! TAAAGAGATTTTATACTGGC+AGG - Chr6:81355316-81355335 MsG0680034131.01.T01:intron 30.0%
! TAATCTACTGGCTACTTTAA+AGG - Chr6:81356955-81356974 MsG0680034131.01.T01:intron 30.0%
! TGTCTCTAAGAAATGAGTTA+TGG - Chr6:81356086-81356105 MsG0680034131.01.T01:intron 30.0%
! TTTTCCCTACATGATTTACT+AGG - Chr6:81355867-81355886 MsG0680034131.01.T01:intron 30.0%
! TTTTGTTCATACCTTCCATA+TGG - Chr6:81355936-81355955 MsG0680034131.01.T01:intron 30.0%
!! AGTTTTGACAAAACTGTATC+TGG - Chr6:81355974-81355993 MsG0680034131.01.T01:intron 30.0%
!! GTTTTGACAAAACTGTATCT+GGG - Chr6:81355975-81355994 MsG0680034131.01.T01:intron 30.0%
!! TAATTTTTGCTGTCCTTTTC+AGG - Chr6:81356293-81356312 MsG0680034131.01.T01:intron 30.0%
AACGTGACTCATTTACTTCT+TGG - Chr6:81357601-81357620 MsG0680034131.01.T01:intron 35.0%
AAGTCAGGTATGGATGATTT+AGG - Chr6:81356488-81356507 MsG0680034131.01.T01:intron 35.0%
ACAACTTCCTTCCGAATAAA+TGG + Chr6:81356227-81356246 None:intergenic 35.0%
ACTCAAGTAGACTATCAACA+TGG + Chr6:81357193-81357212 None:intergenic 35.0%
AGCTTTACTTGTTCCTGAAA+AGG + Chr6:81356309-81356328 None:intergenic 35.0%
AGTCTTTCTACATCCATTCT+TGG + Chr6:81355815-81355834 None:intergenic 35.0%
ATCAAATGCTGAACAACGTA+TGG + Chr6:81356273-81356292 None:intergenic 35.0%
CACAACGCTAATTAATCTAC+TGG - Chr6:81356943-81356962 MsG0680034131.01.T01:intron 35.0%
CCAAGATCCTTCCATTTATT+CGG - Chr6:81356213-81356232 MsG0680034131.01.T01:intron 35.0%
CTCAATAAGGAGTGAAAATC+AGG - Chr6:81357108-81357127 MsG0680034131.01.T01:intron 35.0%
CTTAATGAGACATCAAAGTC+AGG - Chr6:81356473-81356492 MsG0680034131.01.T01:intron 35.0%
CTTATAACAAATGATGCCAG+TGG + Chr6:81355725-81355744 None:intergenic 35.0%
GATAACCGGAATCAAACTAA+CGG - Chr6:81357873-81357892 MsG0680034131.01.T01:intron 35.0%
GTCAAAACTCAAGAACATCT+TGG + Chr6:81355963-81355982 None:intergenic 35.0%
TAGATTCATTGTTCTGTTGG+TGG - Chr6:81356568-81356587 MsG0680034131.01.T01:intron 35.0%
TAGCAGATCAATTGGGAAAA+TGG + Chr6:81356550-81356569 None:intergenic 35.0%
TGCTAGATTCATTGTTCTGT+TGG - Chr6:81356565-81356584 MsG0680034131.01.T01:intron 35.0%
TGTATATCTCAGGAGATAGT+AGG - Chr6:81357271-81357290 MsG0680034131.01.T01:intron 35.0%
TTAAAATTGGATGCGTAGAC+CGG - Chr6:81356047-81356066 MsG0680034131.01.T01:intron 35.0%
TTATAAGTTCGTTTCCGATC+CGG - Chr6:81355738-81355757 MsG0680034131.01.T01:intron 35.0%
TTATGTTTCTTGTAGGCTAG+TGG - Chr6:81358012-81358031 MsG0680034131.01.T01:intron 35.0%
TTCCTCCCTCAAAATTACAT+TGG - Chr6:81357439-81357458 MsG0680034131.01.T01:intron 35.0%
! AAATGCGATTAAGCACCTTT+TGG - Chr6:81355675-81355694 MsG0680034131.01.T01:intron 35.0%
! AACTTTTCCAAGATAGTGCT+TGG - Chr6:81355187-81355206 MsG0680034131.01.T01:intron 35.0%
! AAGCAAGCGTAAGAATTTTC+CGG - Chr6:81358057-81358076 MsG0680034131.01.T01:intron 35.0%
! AAGGTGCTTAATCGCATTTA+GGG + Chr6:81355674-81355693 None:intergenic 35.0%
! AATGCATTTCTCTTTTCGCA+TGG - Chr6:81355144-81355163 MsG0680034131.01.T01:intron 35.0%
! CAACCATTTTCTAACAGATC+AGG + Chr6:81357040-81357059 None:intergenic 35.0%
! CATTTGCTCTGAATTATTGG+TGG - Chr6:81355906-81355925 MsG0680034131.01.T01:intron 35.0%
! TATAAAGGCATATGCAATGG+CGG - Chr6:81354989-81355008 MsG0680034131.01.T01:three_prime_UTR 35.0%
!! AAAGGTGCTTAATCGCATTT+AGG + Chr6:81355675-81355694 None:intergenic 35.0%
!! AACCAATGTAATTTTGAGGG+AGG + Chr6:81357444-81357463 None:intergenic 35.0%
!! TGCTGTTTCAGCAATTTCTT+TGG + Chr6:81357695-81357714 None:intergenic 35.0%
!!! AAGGAAGTTGTGTTGTTTTC+AGG - Chr6:81356236-81356255 MsG0680034131.01.T01:intron 35.0%
!!! AGTTGTGTTGTTTTCAGGTT+TGG - Chr6:81356241-81356260 MsG0680034131.01.T01:intron 35.0%
!!! CTCATGGGGATTTTAATTGA+AGG - Chr6:81355062-81355081 MsG0680034131.01.T01:three_prime_UTR 35.0%
AACAACAGTTTGGATGATGC+AGG - Chr6:81356670-81356689 MsG0680034131.01.T01:intron 40.0%
AACTTGTATCGCTTTATCCC+CGG + Chr6:81358079-81358098 None:intergenic 40.0%
AATGCTGAACAACGTATGGA+AGG + Chr6:81356269-81356288 None:intergenic 40.0%
ACTTCATAAAGCCCTCGATT+GGG - Chr6:81356448-81356467 MsG0680034131.01.T01:intron 40.0%
AGATACTTGGGAAATCTGAC+TGG - Chr6:81356387-81356406 MsG0680034131.01.T01:intron 40.0%
AGATCAATTGGGAAAATGGC+AGG + Chr6:81356546-81356565 None:intergenic 40.0%
AGGCTAGTGGTGATATTGAT+TGG - Chr6:81358025-81358044 MsG0680034131.01.T01:intron 40.0%
AGGTGCTTAATCGCATTTAG+GGG + Chr6:81355673-81355692 None:intergenic 40.0%
ATCAATTGGGAAAATGGCAG+GGG + Chr6:81356544-81356563 None:intergenic 40.0%
ATTCCGGTTATCATGAAGTC+CGG + Chr6:81357865-81357884 None:intergenic 40.0%
CCGAATAAATGGAAGGATCT+TGG + Chr6:81356216-81356235 None:intergenic 40.0%
CTAGTGAGCTAGTTGAATGT+GGG - Chr6:81357366-81357385 MsG0680034131.01.T01:intron 40.0%
CTTCCTTCCGAATAAATGGA+AGG + Chr6:81356223-81356242 None:intergenic 40.0%
GAAAATGTTTGAACCTACCG+TGG - Chr6:81357812-81357831 MsG0680034131.01.T01:intron 40.0%
GATCAATTGGGAAAATGGCA+GGG + Chr6:81356545-81356564 None:intergenic 40.0%
GATCCTTCCATTTATTCGGA+AGG - Chr6:81356217-81356236 MsG0680034131.01.T01:intron 40.0%
GTGCCTGATCTGTTAGAAAA+TGG - Chr6:81357034-81357053 MsG0680034131.01.T01:intron 40.0%
TAACAAATGATGCCAGTGGA+TGG + Chr6:81355721-81355740 None:intergenic 40.0%
TCATGAAGTCCGGTTGAATT+TGG + Chr6:81357855-81357874 None:intergenic 40.0%
TCGTGGTTAAGTGTGTTCAA+TGG - Chr6:81356779-81356798 MsG0680034131.01.T01:CDS 40.0%
TCTAGTGAGCTAGTTGAATG+TGG - Chr6:81357365-81357384 MsG0680034131.01.T01:intron 40.0%
TCTTAAGCCAAGCACTATCT+TGG + Chr6:81355197-81355216 None:intergenic 40.0%
TGAGACATCAAAGTCAGGTA+TGG - Chr6:81356478-81356497 MsG0680034131.01.T01:intron 40.0%
TTTCACTCCTTATTGAGCAG+CGG + Chr6:81357105-81357124 None:intergenic 40.0%
! AGCAAGCGTAAGAATTTTCC+GGG - Chr6:81358058-81358077 MsG0680034131.01.T01:intron 40.0%
! ATAGTCATTGAGGTGTCAGT+CGG + Chr6:81357982-81358001 None:intergenic 40.0%
! GGCTATAAAGGCATATGCAA+TGG - Chr6:81354986-81355005 MsG0680034131.01.T01:three_prime_UTR 40.0%
! TTTTGATATGCACCATCCAC+TGG - Chr6:81355706-81355725 MsG0680034131.01.T01:intron 40.0%
!! ACAACAGTGTTGACACTTTC+CGG + Chr6:81356069-81356088 None:intergenic 40.0%
!! CAGTCAAAGAAAGTACCACA+GGG + Chr6:81356424-81356443 None:intergenic 40.0%
!! TCAGTCAAAGAAAGTACCAC+AGG + Chr6:81356425-81356444 None:intergenic 40.0%
!! TCATTGTTCTGTTGGTGGTA+GGG - Chr6:81356573-81356592 MsG0680034131.01.T01:intron 40.0%
!! TTCATTGTTCTGTTGGTGGT+AGG - Chr6:81356572-81356591 MsG0680034131.01.T01:intron 40.0%
!!! TATTTTGGCTTGCTTACGTC+CGG + Chr6:81355760-81355779 None:intergenic 40.0%
AACATCTTGGCCCATATGGA+AGG + Chr6:81355950-81355969 None:intergenic 45.0%
AATCCCCATGAGAAGAGCTT+CGG + Chr6:81355054-81355073 None:intergenic 45.0%
AGAGCTTCGGTTCCTACTTT+AGG + Chr6:81355041-81355060 None:intergenic 45.0%
CAACCGGACTTCATGATAAC+CGG - Chr6:81357859-81357878 MsG0680034131.01.T01:intron 45.0%
CAAGAACATCTTGGCCCATA+TGG + Chr6:81355954-81355973 None:intergenic 45.0%
CACGGACAGTAAACAAACTG+AGG + Chr6:81357227-81357246 None:intergenic 45.0%
CACTTCATAAAGCCCTCGAT+TGG - Chr6:81356447-81356466 MsG0680034131.01.T01:intron 45.0%
CGGTTCAAGCCAAATTCAAC+CGG - Chr6:81357843-81357862 MsG0680034131.01.T01:intron 45.0%
CTAGTTCAACCGATAGAACC+GGG + Chr6:81357913-81357932 None:intergenic 45.0%
CTCATTAAGTGCCCAATCGA+GGG + Chr6:81356462-81356481 None:intergenic 45.0%
GCTAGTTCAACCGATAGAAC+CGG + Chr6:81357914-81357933 None:intergenic 45.0%
GGTGCTTAATCGCATTTAGG+GGG + Chr6:81355672-81355691 None:intergenic 45.0%
GTTGAATGTGGGAGACTTTC+AGG - Chr6:81357377-81357396 MsG0680034131.01.T01:intron 45.0%
TCAATTGGGAAAATGGCAGG+GGG + Chr6:81356543-81356562 None:intergenic 45.0%
TCTCATTAAGTGCCCAATCG+AGG + Chr6:81356463-81356482 None:intergenic 45.0%
TGTCCTATTCCCGGTTCTAT+CGG - Chr6:81357901-81357920 MsG0680034131.01.T01:intron 45.0%
TTATTCCCCGCTGCTCAATA+AGG - Chr6:81357095-81357114 MsG0680034131.01.T01:intron 45.0%
TTCACTCCTTATTGAGCAGC+GGG + Chr6:81357104-81357123 None:intergenic 45.0%
! AATCGCATTTAGGGGGCATA+TGG + Chr6:81355665-81355684 None:intergenic 45.0%
! CAATCGAGGGCTTTATGAAG+TGG + Chr6:81356449-81356468 None:intergenic 45.0%
! CGAAAGGTCTTGTCTGCTTT+AGG - Chr6:81357652-81357671 MsG0680034131.01.T01:intron 45.0%
! GCAAGCGTAAGAATTTTCCG+GGG - Chr6:81358059-81358078 MsG0680034131.01.T01:intron 45.0%
! GTTCGCCGTTAGTTTGATTC+CGG + Chr6:81357881-81357900 None:intergenic 45.0%
! GTTCTATCGGTTGAACTAGC+TGG - Chr6:81357914-81357933 MsG0680034131.01.T01:intron 45.0%
!! CGGTTGAATTTGGCTTGAAC+CGG + Chr6:81357845-81357864 None:intergenic 45.0%
AACCTACCGTGGTTCAACTC+CGG - Chr6:81357823-81357842 MsG0680034131.01.T01:intron 50.0%
AGAAGAATCGGCAGGTCGAA+AGG - Chr6:81357636-81357655 MsG0680034131.01.T01:intron 50.0%
AGGAACCGAAGCTCTTCTCA+TGG - Chr6:81355046-81355065 MsG0680034131.01.T01:three_prime_UTR 50.0%
CAACCGATAGAACCGGGAAT+AGG + Chr6:81357907-81357926 None:intergenic 50.0%
CTTGAACCGGAGTTGAACCA+CGG + Chr6:81357832-81357851 None:intergenic 50.0%
GAACCGAAGCTCTTCTCATG+GGG - Chr6:81355048-81355067 MsG0680034131.01.T01:three_prime_UTR 50.0%
GGAACCGAAGCTCTTCTCAT+GGG - Chr6:81355047-81355066 MsG0680034131.01.T01:three_prime_UTR 50.0%
TCACTCCTTATTGAGCAGCG+GGG + Chr6:81357103-81357122 None:intergenic 50.0%
TGGTCACAAGAAGAATCGGC+AGG - Chr6:81357628-81357647 MsG0680034131.01.T01:intron 50.0%
! CAATGGCGGAGTTGGAAACA+AGG - Chr6:81355003-81355022 MsG0680034131.01.T01:three_prime_UTR 50.0%
! TGGTTTAAGGTGGTCGGCAA+GGG - Chr6:81354965-81354984 MsG0680034131.01.T01:three_prime_UTR 50.0%
! TTGGTTTAAGGTGGTCGGCA+AGG - Chr6:81354964-81354983 MsG0680034131.01.T01:three_prime_UTR 50.0%
!! CAAAGAAAGTACCACAGGGC+TGG + Chr6:81356420-81356439 None:intergenic 50.0%
AACCGGAGTTGAACCACGGT+AGG + Chr6:81357828-81357847 None:intergenic 55.0%
ACGGCGAACTGTCCTATTCC+CGG - Chr6:81357892-81357911 MsG0680034131.01.T01:intron 55.0%
GTGGTCGGCAAGGGCTATAA+AGG - Chr6:81354974-81354993 MsG0680034131.01.T01:three_prime_UTR 55.0%
! GGCATATGCAATGGCGGAGT+TGG - Chr6:81354995-81355014 MsG0680034131.01.T01:three_prime_UTR 55.0%
!! TGGCTTGCTTACGTCCGGAT+CGG + Chr6:81355755-81355774 None:intergenic 55.0%
CTGGTACTACTCCAGCCCTG+TGG - Chr6:81356406-81356425 MsG0680034131.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 81354960 81358221 81354960 ID=MsG0680034131.01;Name=MsG0680034131.01
Chr6 mRNA 81354960 81358221 81354960 ID=MsG0680034131.01.T01;Parent=MsG0680034131.01;Name=MsG0680034131.01.T01;_AED=0.45;_eAED=0.46;_QI=0|1|0.75|1|1|1|4|153|157
Chr6 exon 81358098 81358221 81358098 ID=MsG0680034131.01.T01:exon:11747;Parent=MsG0680034131.01.T01
Chr6 exon 81356687 81356866 81356687 ID=MsG0680034131.01.T01:exon:11748;Parent=MsG0680034131.01.T01
Chr6 exon 81355467 81355594 81355467 ID=MsG0680034131.01.T01:exon:11749;Parent=MsG0680034131.01.T01
Chr6 exon 81354960 81355154 81354960 ID=MsG0680034131.01.T01:exon:11750;Parent=MsG0680034131.01.T01
Chr6 CDS 81358098 81358221 81358098 ID=MsG0680034131.01.T01:cds;Parent=MsG0680034131.01.T01
Chr6 CDS 81356687 81356866 81356687 ID=MsG0680034131.01.T01:cds;Parent=MsG0680034131.01.T01
Chr6 CDS 81355467 81355594 81355467 ID=MsG0680034131.01.T01:cds;Parent=MsG0680034131.01.T01
Chr6 CDS 81355113 81355154 81355113 ID=MsG0680034131.01.T01:cds;Parent=MsG0680034131.01.T01
Chr6 three_prime_UTR 81354960 81355112 81354960 ID=MsG0680034131.01.T01:three_prime_utr;Parent=MsG0680034131.01.T01
Gene Sequence

>MsG0680034131.01.T01

TTGTTTGGTTTAAGGTGGTCGGCAAGGGCTATAAAGGCATATGCAATGGCGGAGTTGGAAACAAGGAAACTTAAGTATCCTAAAGTAGGAACCGAAGCTCTTCTCATGGGGATTTTAATTGAAGGAACAAGTAAAGCTGCAAAATTCTTAAGAGCTAATGGAATTACTTATCTGAAAGTACGCGAACAAACATTAGAGATACTTGGGAAATCTGACTGGTACTACTCCAGCCCTGTGGTACTTTCTTTGACTGAACCACTTCATAAAGCCCTCGATTGGGCACTTAATGAGACATCAAAGTCAGGTGAAGGGGAAACAAACGTGACTCATTTACTTCTTGGAATTTGGTCACAAGAAGAATCGGCAGGTCGAAAGGTCTTGTCTGCTTTAGGTTTCAACGATGAAAAAGCCAAAGAAATTGCTGAAACAGCAGCTAGTGGTGATATTGATTGGAGTTTCAAGAAGCAAGCGTAA

Protein sequence

>MsG0680034131.01.T01

LFGLRWSARAIKAYAMAELETRKLKYPKVGTEALLMGILIEGTSKAAKFLRANGITYLKVREQTLEILGKSDWYYSSPVVLSLTEPLHKALDWALNETSKSGEGETNVTHLLLGIWSQEESAGRKVLSALGFNDEKAKEIAETAASGDIDWSFKKQA*