Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0802760 | sp|Q7ZVZ7|AB17C_DANRE | 39.924 | 263 | 135 | 6 | 6 | 247 | 27 | 287 | 1.68e-59 | 194 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0802760 | A0A072TNV6 | 93.939 | 297 | 2 | 1 | 1 | 281 | 1 | 297 | 0.0 | 577 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0001800 | Msa0802760 | 0.811042 | 8.533296e-51 | -8.615850e-47 |
Msa0002110 | Msa0802760 | -0.842194 | 3.000940e-58 | -8.615850e-47 |
Msa0011440 | Msa0802760 | -0.807178 | 5.738458e-50 | -8.615850e-47 |
Msa0011450 | Msa0802760 | -0.806751 | 7.063353e-50 | -8.615850e-47 |
Msa0013270 | Msa0802760 | 0.815371 | 9.564907e-52 | -8.615850e-47 |
Msa0016380 | Msa0802760 | -0.814529 | 1.470501e-51 | -8.615850e-47 |
Msa0017300 | Msa0802760 | -0.841558 | 4.418149e-58 | -8.615850e-47 |
Msa0025570 | Msa0802760 | 0.827896 | 1.214101e-54 | -8.615850e-47 |
Msa0033220 | Msa0802760 | 0.829956 | 3.850525e-55 | -8.615850e-47 |
Msa0039750 | Msa0802760 | 0.812903 | 3.354184e-51 | -8.615850e-47 |
Msa0044530 | Msa0802760 | -0.844527 | 7.154065e-59 | -8.615850e-47 |
Msa0060410 | Msa0802760 | 0.825439 | 4.683901e-54 | -8.615850e-47 |
Msa0065670 | Msa0802760 | -0.852955 | 3.286543e-61 | -8.615850e-47 |
Msa0073110 | Msa0802760 | 0.803724 | 3.040873e-49 | -8.615850e-47 |
Msa0077570 | Msa0802760 | -0.819033 | 1.436216e-52 | -8.615850e-47 |
Msa0079880 | Msa0802760 | 0.837134 | 6.219485e-57 | -8.615850e-47 |
Msa0080030 | Msa0802760 | 0.826405 | 2.761724e-54 | -8.615850e-47 |
Msa0086620 | Msa0802760 | -0.826850 | 2.163229e-54 | -8.615850e-47 |
Msa0089470 | Msa0802760 | -0.813514 | 2.463366e-51 | -8.615850e-47 |
Msa0091220 | Msa0802760 | -0.836614 | 8.439568e-57 | -8.615850e-47 |
Msa0091240 | Msa0802760 | -0.843261 | 1.561730e-58 | -8.615850e-47 |
Msa0094170 | Msa0802760 | -0.815915 | 7.237986e-52 | -8.615850e-47 |
Msa0094560 | Msa0802760 | 0.849371 | 3.376496e-60 | -8.615850e-47 |
Msa0094570 | Msa0802760 | 0.820985 | 5.135092e-53 | -8.615850e-47 |
Msa0095810 | Msa0802760 | -0.840308 | 9.405639e-58 | -8.615850e-47 |
Msa0095890 | Msa0802760 | -0.818856 | 1.575349e-52 | -8.615850e-47 |
Msa0102240 | Msa0802760 | 0.828055 | 1.112083e-54 | -8.615850e-47 |
Msa0106540 | Msa0802760 | 0.804199 | 2.423055e-49 | -8.615850e-47 |
Msa0111110 | Msa0802760 | -0.841553 | 4.431703e-58 | -8.615850e-47 |
Msa0603180 | Msa0802760 | -0.817746 | 2.810551e-52 | -8.615850e-47 |
Msa0604190 | Msa0802760 | 0.802295 | 6.003844e-49 | -8.615850e-47 |
Msa0638300 | Msa0802760 | -0.802668 | 5.029570e-49 | -8.615850e-47 |
Msa0644220 | Msa0802760 | -0.805565 | 1.255247e-49 | -8.615850e-47 |
Msa0645390 | Msa0802760 | 0.813932 | 1.992450e-51 | -8.615850e-47 |
Msa0651990 | Msa0802760 | -0.800376 | 1.483634e-48 | -8.615850e-47 |
Msa0657710 | Msa0802760 | 0.803066 | 4.163113e-49 | -8.615850e-47 |
Msa0661480 | Msa0802760 | 0.859914 | 2.974108e-63 | -8.615850e-47 |
Msa0676570 | Msa0802760 | -0.810830 | 9.484638e-51 | -8.615850e-47 |
Msa0684030 | Msa0802760 | -0.816219 | 6.190141e-52 | -8.615850e-47 |
Msa0702800 | Msa0802760 | 0.801388 | 9.217508e-49 | -8.615850e-47 |
Msa0704690 | Msa0802760 | 0.800938 | 1.139414e-48 | -8.615850e-47 |
Msa0719270 | Msa0802760 | 0.819959 | 8.829981e-53 | -8.615850e-47 |
Msa0719750 | Msa0802760 | 0.932412 | 8.856368e-95 | -8.615850e-47 |
Msa0732970 | Msa0802760 | 0.811303 | 7.489913e-51 | -8.615850e-47 |
Msa0733240 | Msa0802760 | -0.801105 | 1.053508e-48 | -8.615850e-47 |
Msa0736920 | Msa0802760 | 0.808279 | 3.348453e-50 | -8.615850e-47 |
Msa0741040 | Msa0802760 | 0.812123 | 4.967394e-51 | -8.615850e-47 |
Msa0745140 | Msa0802760 | 0.801348 | 9.392920e-49 | -8.615850e-47 |
Msa0753590 | Msa0802760 | -0.808567 | 2.906416e-50 | -8.615850e-47 |
Msa0755880 | Msa0802760 | 0.816258 | 6.066760e-52 | -8.615850e-47 |
Msa0773960 | Msa0802760 | 0.802261 | 6.102408e-49 | -8.615850e-47 |
Msa0776640 | Msa0802760 | 0.803399 | 3.552232e-49 | -8.615850e-47 |
Msa0778570 | Msa0802760 | 0.801700 | 7.957979e-49 | -8.615850e-47 |
Msa0790650 | Msa0802760 | -0.821708 | 3.497204e-53 | -8.615850e-47 |
Msa0802760 | Msa0812020 | -0.808080 | 3.691559e-50 | -8.615850e-47 |
Msa0802760 | Msa0813160 | 0.813992 | 1.933062e-51 | -8.615850e-47 |
Msa0802760 | Msa0821530 | 0.825466 | 4.616983e-54 | -8.615850e-47 |
Msa0802760 | Msa0823480 | -0.807309 | 5.382588e-50 | -8.615850e-47 |
Msa0802760 | Msa0825920 | 0.800588 | 1.343040e-48 | -8.615850e-47 |
Msa0802760 | Msa0828960 | 0.800150 | 1.649154e-48 | -8.615850e-47 |
Msa0802760 | Msa0833200 | -0.818945 | 1.504194e-52 | -8.615850e-47 |
Msa0802760 | Msa0840520 | 0.821107 | 4.813665e-53 | -8.615850e-47 |
Msa0802760 | Msa0841050 | 0.936412 | 1.809533e-97 | -8.615850e-47 |
Msa0802760 | Msa0852090 | -0.801342 | 9.420971e-49 | -8.615850e-47 |
Msa0802760 | Msa0853200 | -0.817227 | 3.678129e-52 | -8.615850e-47 |
Msa0802760 | Msa0853590 | 0.806569 | 7.720289e-50 | -8.615850e-47 |
Msa0802760 | Msa0862480 | -0.802734 | 4.874910e-49 | -8.615850e-47 |
Msa0802760 | Msa0930770 | 0.808381 | 3.185751e-50 | -8.615850e-47 |
Msa0802760 | Msa0964400 | -0.809357 | 1.969243e-50 | -8.615850e-47 |
Msa0802760 | Msa1002550 | -0.800594 | 1.339639e-48 | -8.615850e-47 |
Msa0802760 | Msa1022420 | 0.805561 | 1.257828e-49 | -8.615850e-47 |
Msa0802760 | Msa1029840 | 0.813886 | 2.039501e-51 | -8.615850e-47 |
Msa0802760 | Msa1044250 | 0.808600 | 2.859828e-50 | -8.615850e-47 |
Msa0802760 | Msa1086850 | -0.803695 | 3.083044e-49 | -8.615850e-47 |
Msa0802760 | Msa1106730 | -0.803457 | 3.454781e-49 | -8.615850e-47 |
Msa0802760 | Msa1149910 | 0.825084 | 5.683932e-54 | -8.615850e-47 |
Msa0802760 | Msa1154320 | 0.802180 | 6.340460e-49 | -8.615850e-47 |
Msa0802760 | Msa1156730 | 0.810656 | 1.034002e-50 | -8.615850e-47 |
Msa0802760 | Msa1184680 | 0.821852 | 3.238585e-53 | -8.615850e-47 |
Msa0802760 | Msa1191530 | -0.804489 | 2.108184e-49 | -8.615850e-47 |
Msa0802760 | Msa1199700 | -0.810254 | 1.262775e-50 | -8.615850e-47 |
Msa0802760 | Msa1221130 | 0.835404 | 1.711663e-56 | -8.615850e-47 |
Msa0802760 | Msa1223540 | 0.808458 | 3.066616e-50 | -8.615850e-47 |
Msa0802760 | Msa1223620 | 0.801042 | 1.085190e-48 | -8.615850e-47 |
Msa0802760 | Msa1255030 | -0.802804 | 4.713881e-49 | -8.615850e-47 |
Msa0802760 | Msa1263520 | 0.807225 | 5.608030e-50 | -8.615850e-47 |
Msa0802760 | Msa1266120 | -0.815697 | 8.096440e-52 | -8.615850e-47 |
Msa0802760 | Msa1268360 | 0.801479 | 8.831562e-49 | -8.615850e-47 |
Msa0802760 | Msa1273320 | 0.804850 | 1.772379e-49 | -8.615850e-47 |
Msa0802760 | Msa1286860 | -0.827014 | 1.977069e-54 | -8.615850e-47 |
Msa0802760 | Msa1287100 | -0.812106 | 5.010624e-51 | -8.615850e-47 |
Msa0802760 | Msa1295210 | -0.828269 | 9.873667e-55 | -8.615850e-47 |
Msa0802760 | Msa1295480 | -0.841208 | 5.460708e-58 | -8.615850e-47 |
Msa0802760 | Msa1331720 | -0.801109 | 1.051632e-48 | -8.615850e-47 |
Msa0802760 | Msa1336020 | 0.814674 | 1.365753e-51 | -8.615850e-47 |
Msa0802760 | Msa1343600 | 0.806426 | 8.273013e-50 | -8.615850e-47 |
Msa0802760 | Msa1348170 | -0.802868 | 4.574553e-49 | -8.615850e-47 |
Msa0802760 | Msa1366140 | -0.805986 | 1.024384e-49 | -8.615850e-47 |
Msa0802760 | Msa1368390 | 0.808474 | 3.042918e-50 | -8.615850e-47 |
Msa0802760 | Msa1387450 | -0.810663 | 1.030499e-50 | -8.615850e-47 |
Msa0802760 | Msa1401300 | 0.844426 | 7.615018e-59 | -8.615850e-47 |
Msa0802760 | Msa1405830 | 0.804410 | 2.189101e-49 | -8.615850e-47 |
Msa0802760 | Msa1407810 | 0.822270 | 2.592022e-53 | -8.615850e-47 |
Msa0802760 | Msa1412330 | -0.818652 | 1.753029e-52 | -8.615850e-47 |
Msa0802760 | Msa1421630 | 0.814487 | 1.502992e-51 | -8.615850e-47 |
Msa0802760 | Msa1422860 | 0.830018 | 3.719206e-55 | -8.615850e-47 |
Msa0802760 | Msa1428230 | -0.829755 | 4.310852e-55 | -8.615850e-47 |
Msa0802760 | Msa1432360 | 0.813546 | 2.423756e-51 | -8.615850e-47 |
Msa0802760 | Msa1433360 | 0.815721 | 7.995382e-52 | -8.615850e-47 |
Msa0802760 | Msa1435950 | -0.805548 | 1.266005e-49 | -8.615850e-47 |
Msa0802760 | Msa1436620 | 0.820231 | 7.650642e-53 | -8.615850e-47 |
Msa0802760 | Msa1437780 | 0.822164 | 2.743018e-53 | -8.615850e-47 |
Msa0802760 | Msa1451910 | -0.816726 | 4.765742e-52 | -8.615850e-47 |
Msa0121320 | Msa0802760 | 0.803978 | 2.692495e-49 | -8.615850e-47 |
Msa0151510 | Msa0802760 | -0.809530 | 1.807989e-50 | -8.615850e-47 |
Msa0154890 | Msa0802760 | -0.819444 | 1.157556e-52 | -8.615850e-47 |
Msa0165640 | Msa0802760 | 0.836593 | 8.543884e-57 | -8.615850e-47 |
Msa0166180 | Msa0802760 | 0.803448 | 3.470125e-49 | -8.615850e-47 |
Msa0183310 | Msa0802760 | -0.817203 | 3.724081e-52 | -8.615850e-47 |
Msa0189560 | Msa0802760 | -0.813382 | 2.632549e-51 | -8.615850e-47 |
Msa0198990 | Msa0802760 | 0.829731 | 4.368759e-55 | -8.615850e-47 |
Msa0203080 | Msa0802760 | 0.804558 | 2.038810e-49 | -8.615850e-47 |
Msa0211460 | Msa0802760 | 0.817530 | 3.143743e-52 | -8.615850e-47 |
Msa0225790 | Msa0802760 | -0.820961 | 5.200763e-53 | -8.615850e-47 |
Msa0227770 | Msa0802760 | -0.813859 | 2.067369e-51 | -8.615850e-47 |
Msa0234150 | Msa0802760 | 0.810630 | 1.047465e-50 | -8.615850e-47 |
Msa0365210 | Msa0802760 | 0.800035 | 1.740430e-48 | -8.615850e-47 |
Msa0371350 | Msa0802760 | -0.808961 | 2.394689e-50 | -8.615850e-47 |
Msa0386880 | Msa0802760 | 0.816532 | 5.268404e-52 | -8.615850e-47 |
Msa0388210 | Msa0802760 | 0.803375 | 3.592660e-49 | -8.615850e-47 |
Msa0436100 | Msa0802760 | 0.820432 | 6.879613e-53 | -8.615850e-47 |
Msa0437440 | Msa0802760 | -0.810276 | 1.249394e-50 | -8.615850e-47 |
Msa0467170 | Msa0802760 | 0.804801 | 1.814483e-49 | -8.615850e-47 |
Msa0467330 | Msa0802760 | 0.810305 | 1.231498e-50 | -8.615850e-47 |
Msa0474660 | Msa0802760 | -0.816114 | 6.532890e-52 | -8.615850e-47 |
Msa0241750 | Msa0802760 | 0.858359 | 8.699059e-63 | -8.615850e-47 |
Msa0260580 | Msa0802760 | -0.817872 | 2.632134e-52 | -8.615850e-47 |
Msa0260640 | Msa0802760 | -0.815309 | 9.874487e-52 | -8.615850e-47 |
Msa0260870 | Msa0802760 | -0.807594 | 4.682709e-50 | -8.615850e-47 |
Msa0267450 | Msa0802760 | -0.816015 | 6.876514e-52 | -8.615850e-47 |
Msa0267510 | Msa0802760 | -0.815446 | 9.208864e-52 | -8.615850e-47 |
Msa0269220 | Msa0802760 | -0.803170 | 3.960401e-49 | -8.615850e-47 |
Msa0279810 | Msa0802760 | 0.828503 | 8.670597e-55 | -8.615850e-47 |
Msa0284800 | Msa0802760 | 0.819928 | 8.977992e-53 | -8.615850e-47 |
Msa0287480 | Msa0802760 | 0.811097 | 8.302616e-51 | -8.615850e-47 |
Msa0290800 | Msa0802760 | 0.804662 | 1.939703e-49 | -8.615850e-47 |
Msa0298670 | Msa0802760 | -0.818169 | 2.255719e-52 | -8.615850e-47 |
Msa0307430 | Msa0802760 | 0.802253 | 6.124345e-49 | -8.615850e-47 |
Msa0313900 | Msa0802760 | 0.804331 | 2.274077e-49 | -8.615850e-47 |
Msa0319220 | Msa0802760 | 0.835158 | 1.975207e-56 | -8.615850e-47 |
Msa0320600 | Msa0802760 | 0.800084 | 1.701289e-48 | -8.615850e-47 |
Msa0326170 | Msa0802760 | -0.841420 | 4.802557e-58 | -8.615850e-47 |
Msa0331070 | Msa0802760 | -0.815822 | 7.593583e-52 | -8.615850e-47 |
Msa0339530 | Msa0802760 | 0.802839 | 4.636053e-49 | -8.615850e-47 |
Msa0340700 | Msa0802760 | -0.809355 | 1.971700e-50 | -8.615850e-47 |
Msa0506750 | Msa0802760 | 0.837957 | 3.825520e-57 | -8.615850e-47 |
Msa0525180 | Msa0802760 | -0.800749 | 1.245515e-48 | -8.615850e-47 |
Msa0528180 | Msa0802760 | 0.823517 | 1.327489e-53 | -8.615850e-47 |
Msa0556450 | Msa0802760 | -0.800284 | 1.548977e-48 | -8.615850e-47 |
Msa0566280 | Msa0802760 | 0.817898 | 2.597496e-52 | -8.615850e-47 |
Msa0567330 | Msa0802760 | 0.826782 | 2.245838e-54 | -8.615850e-47 |
Msa0567570 | Msa0802760 | 0.816977 | 4.185816e-52 | -8.615850e-47 |
Msa0567610 | Msa0802760 | 0.815806 | 7.652675e-52 | -8.615850e-47 |
Msa0572760 | Msa0802760 | 0.819935 | 8.942268e-53 | -8.615850e-47 |
Msa0574900 | Msa0802760 | 0.804353 | 2.250365e-49 | -8.615850e-47 |
Msa0576320 | Msa0802760 | 0.824847 | 6.463835e-54 | -8.615850e-47 |
Msa0601380 | Msa0802760 | 0.818991 | 1.467876e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0802760 | MtrunA17_Chr5g0410651 | 93.289 | 298 | 4 | 1 | 1 | 282 | 1 | 298 | 0.0 | 570 |
Msa0802760 | MtrunA17_Chr4g0074441 | 56.803 | 294 | 100 | 5 | 1 | 274 | 1 | 287 | 1.57e-115 | 334 |
Msa0802760 | MtrunA17_Chr7g0226551 | 56.410 | 273 | 98 | 2 | 1 | 257 | 1 | 268 | 8.76e-111 | 325 |
Msa0802760 | MtrunA17_Chr3g0116571 | 53.177 | 299 | 118 | 4 | 1 | 282 | 1 | 294 | 2.67e-109 | 322 |
Msa0802760 | MtrunA17_Chr7g0220431 | 56.884 | 276 | 92 | 3 | 1 | 257 | 1 | 268 | 4.75e-105 | 311 |
Msa0802760 | MtrunA17_Chr6g0457861 | 54.545 | 275 | 102 | 3 | 1 | 252 | 1 | 275 | 7.21e-101 | 299 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0802760 | AT1G32190.1 | 73.244 | 299 | 60 | 2 | 1 | 279 | 1 | 299 | 1.96e-153 | 436 |
Msa0802760 | AT2G24320.2 | 53.199 | 297 | 114 | 4 | 1 | 278 | 1 | 291 | 8.96e-114 | 330 |
Msa0802760 | AT4G31020.2 | 56.827 | 271 | 94 | 3 | 1 | 254 | 1 | 265 | 4.37e-113 | 328 |
Msa0802760 | AT4G31020.1 | 56.827 | 271 | 94 | 3 | 1 | 254 | 1 | 265 | 4.37e-113 | 328 |
Msa0802760 | AT2G24320.1 | 53.448 | 290 | 110 | 4 | 8 | 278 | 1 | 284 | 1.46e-111 | 324 |
Msa0802760 | AT3G30380.2 | 58.582 | 268 | 89 | 3 | 1 | 252 | 1 | 262 | 3.06e-111 | 327 |
Msa0802760 | AT3G30380.1 | 58.582 | 268 | 89 | 3 | 1 | 252 | 1 | 262 | 6.33e-111 | 327 |
Msa0802760 | AT4G24760.1 | 54.417 | 283 | 108 | 3 | 1 | 267 | 1 | 278 | 2.13e-110 | 324 |
Msa0802760 | AT3G01690.1 | 51.948 | 308 | 108 | 4 | 1 | 273 | 1 | 303 | 3.41e-107 | 316 |
Msa0802760 | AT5G14390.1 | 50.155 | 323 | 117 | 5 | 1 | 285 | 1 | 317 | 5.29e-106 | 313 |
Msa0802760 | AT1G66900.1 | 56.000 | 275 | 97 | 4 | 1 | 257 | 1 | 269 | 2.92e-104 | 305 |
Msa0802760 | AT5G38220.3 | 55.970 | 268 | 95 | 4 | 1 | 252 | 1 | 261 | 2.96e-102 | 302 |
Msa0802760 | AT5G38220.1 | 55.970 | 268 | 95 | 4 | 1 | 252 | 1 | 261 | 2.96e-102 | 302 |
Msa0802760 | AT1G13610.1 | 50.676 | 296 | 123 | 5 | 1 | 279 | 1 | 290 | 3.76e-97 | 290 |
Msa0802760 | AT1G32190.2 | 71.751 | 177 | 34 | 1 | 119 | 279 | 38 | 214 | 1.23e-86 | 263 |
Msa0802760 | AT5G38220.2 | 59.500 | 200 | 74 | 3 | 1 | 200 | 1 | 193 | 8.35e-77 | 234 |
Msa0802760 | AT1G13610.2 | 51.136 | 176 | 67 | 2 | 120 | 279 | 18 | 190 | 9.42e-51 | 168 |
Find 84 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCACAGCGGAATTCTTTC+TGG | 0.105487 | 5_3:-17388977 | Msa0802760:CDS |
TTGTCATCTTCTCCATTTCT+TGG | 0.196441 | 5_3:+17387314 | None:intergenic |
CATGGCAATGCTGCTGATTT+AGG | 0.205462 | 5_3:-17391289 | Msa0802760:CDS |
TTCCTGGCCAACTCCATATT+TGG | 0.237019 | 5_3:+17389084 | None:intergenic |
TCCCGCAGGTATGACTATTC+TGG | 0.284559 | 5_3:-17389367 | Msa0802760:intron |
CTTGGATGAATTTGCATAGA+TGG | 0.300293 | 5_3:+17387332 | None:intergenic |
GAATGCCTTGAAACCAAATA+TGG | 0.310658 | 5_3:-17389097 | Msa0802760:CDS |
TGATCTCTTTGTTCAACTTA+AGG | 0.314107 | 5_3:-17391257 | Msa0802760:CDS |
CATAGATGGCGTATGTAATC+AGG | 0.321303 | 5_3:+17387346 | None:intergenic |
CTGCAGCAGCTAGAGCATTT+AGG | 0.323097 | 5_3:+17387118 | None:intergenic |
TGGCAACCGACTATGGAAAA+TGG | 0.324511 | 5_3:-17387431 | Msa0802760:CDS |
GGTTACATGGCAACCGACTA+TGG | 0.328727 | 5_3:-17387438 | Msa0802760:CDS |
ATGAGAGGTGGTGGAGTTGC+AGG | 0.330521 | 5_3:+17391678 | None:intergenic |
CAGGAAGACGTAATCTTATA+CGG | 0.331817 | 5_3:-17389067 | Msa0802760:CDS |
AGCAAAGTTAATCTTGCATA+AGG | 0.341545 | 5_3:+17391319 | None:intergenic |
ACTTAGAGAAAATTTCAAAA+TGG | 0.355639 | 5_3:+17391591 | None:intergenic |
AGGTATGACTATTCTGGATA+TGG | 0.361762 | 5_3:-17389361 | Msa0802760:CDS |
CAACTCCATATTTGGTTTCA+AGG | 0.370723 | 5_3:+17389092 | None:intergenic |
GGGAGTCATATGAACCCTTA+TGG | 0.381353 | 5_3:-17387405 | Msa0802760:CDS |
ATTATAGCATAAGGTTCAAA+AGG | 0.384795 | 5_3:-17391615 | Msa0802760:five_prime_UTR |
ATGCAAATTCATCCAAGAAA+TGG | 0.386608 | 5_3:-17387326 | Msa0802760:CDS |
CGTATAAGATTACGTCTTCC+TGG | 0.406105 | 5_3:+17389068 | None:intergenic |
CCACAAATTATTATAGCATA+AGG | 0.418270 | 5_3:-17391624 | Msa0802760:five_prime_UTR |
CAAAGAATAGCCTACCTTGC+CGG | 0.418742 | 5_3:+17389330 | None:intergenic |
GCCTCTCAGCCTCGGCAACT+TGG | 0.418920 | 5_3:+17389006 | None:intergenic |
ACCGCCTCCTTTGATCCATA+AGG | 0.421520 | 5_3:+17387390 | None:intergenic |
CCGCCTCCTTTGATCCATAA+GGG | 0.422572 | 5_3:+17387391 | None:intergenic |
GCAAAGTTAATCTTGCATAA+GGG | 0.428314 | 5_3:+17391320 | None:intergenic |
CCTTATGCTATAATAATTTG+TGG | 0.434691 | 5_3:+17391624 | None:intergenic |
ATCTTATACGGGCAATCAGT+TGG | 0.448134 | 5_3:-17389055 | Msa0802760:CDS |
TTAACTTTGCTTTATTCTCA+TGG | 0.455196 | 5_3:-17391307 | Msa0802760:CDS |
AAGTGGACCAACATTGCATT+TGG | 0.456630 | 5_3:-17389032 | Msa0802760:CDS |
TTCTTCAGCTGATATGTTGG+TGG | 0.456841 | 5_3:+17391472 | None:intergenic |
AGCTGATATGTTGGTGGTGA+AGG | 0.458200 | 5_3:+17391478 | None:intergenic |
TCTGGATATGGTGCCTCTAC+CGG | 0.462209 | 5_3:-17389349 | Msa0802760:CDS |
TTCTTCTTCAGCTGATATGT+TGG | 0.469522 | 5_3:+17391469 | None:intergenic |
TTATCATCAGGATGAGGAAT+CGG | 0.478365 | 5_3:+17391409 | None:intergenic |
CAGAAGATGACGTAGTCAAT+TGG | 0.479966 | 5_3:-17387459 | Msa0802760:CDS |
TCATCCTGATGATAACTCAT+TGG | 0.484592 | 5_3:-17391401 | Msa0802760:CDS |
CTTCTTGTTGACACAAAACA+TGG | 0.495893 | 5_3:-17391373 | Msa0802760:CDS |
TGTAGTACAGTGAGAAGATG+TGG | 0.498894 | 5_3:+17391834 | None:intergenic |
ACATCCAATGAGTTATCATC+AGG | 0.502138 | 5_3:+17391397 | None:intergenic |
CTTATGCTATAATAATTTGT+GGG | 0.516767 | 5_3:+17391625 | None:intergenic |
ATAGCCTACCTTGCCGGTAG+AGG | 0.517191 | 5_3:+17389336 | None:intergenic |
GTTGCAGCAGAAACTAGTTA+TGG | 0.519208 | 5_3:+17391800 | None:intergenic |
CTCTATGTCAGCATATGTGC+TGG | 0.520235 | 5_3:+17389129 | None:intergenic |
AACCAAATATGGAGTTGGCC+AGG | 0.523037 | 5_3:-17389086 | Msa0802760:CDS |
AATCTCAGAGTTAATCTCAT+GGG | 0.526908 | 5_3:-17391232 | Msa0802760:CDS |
TGCTATAATAATTTGTGGGT+AGG | 0.531642 | 5_3:+17391629 | None:intergenic |
GGTACAGTGATGATGAGAAT+AGG | 0.531675 | 5_3:+17391700 | None:intergenic |
TACGGGCAATCAGTTGGAAG+TGG | 0.541674 | 5_3:-17389049 | Msa0802760:CDS |
CTTGAAACCAAATATGGAGT+TGG | 0.559208 | 5_3:-17389091 | Msa0802760:CDS |
GCATATGTGCTGGATTCACT+AGG | 0.560112 | 5_3:+17389139 | None:intergenic |
GACGTAGTCAATTGGTTACA+TGG | 0.564056 | 5_3:-17387451 | Msa0802760:CDS |
TTATAGCATAAGGTTCAAAA+GGG | 0.565001 | 5_3:-17391614 | Msa0802760:five_prime_UTR |
TATGAACCCTTATGGATCAA+AGG | 0.569011 | 5_3:-17387397 | Msa0802760:CDS |
AATCTCTGCAACTTTCAAGT+GGG | 0.571956 | 5_3:-17391746 | Msa0802760:five_prime_UTR |
TGTGTGATGAATGGGTTGCA+TGG | 0.573626 | 5_3:-17391536 | Msa0802760:exon |
ATTTGGCAGCCAAGTTGCCG+AGG | 0.573657 | 5_3:-17389015 | Msa0802760:CDS |
AAATCTCTGCAACTTTCAAG+TGG | 0.581026 | 5_3:-17391747 | Msa0802760:five_prime_UTR |
AGGAAGACGTAATCTTATAC+GGG | 0.584093 | 5_3:-17389066 | Msa0802760:CDS |
CAGCACATATGCTGACATAG+AGG | 0.584108 | 5_3:-17389128 | Msa0802760:CDS |
TTGGCTGCCAAATGCAATGT+TGG | 0.588250 | 5_3:+17389025 | None:intergenic |
ACCGACTATGGAAAATGGCA+AGG | 0.593180 | 5_3:-17387426 | Msa0802760:CDS |
GCCAAGTTGCCGAGGCTGAG+AGG | 0.600499 | 5_3:-17389007 | Msa0802760:CDS |
GTTGCCGAGGCTGAGAGGCG+TGG | 0.600591 | 5_3:-17389002 | Msa0802760:CDS |
CCCTTATGGATCAAAGGAGG+CGG | 0.604217 | 5_3:-17387391 | Msa0802760:CDS |
AATGAGTTATCATCAGGATG+AGG | 0.605904 | 5_3:+17391403 | None:intergenic |
TAATCTCAGAGTTAATCTCA+TGG | 0.609130 | 5_3:-17391233 | Msa0802760:CDS |
ATCTCAGAGTTAATCTCATG+GGG | 0.613897 | 5_3:-17391231 | Msa0802760:intron |
ATAGATGGCGTATGTAATCA+GGG | 0.614420 | 5_3:+17387347 | None:intergenic |
AGAACCACGCCTCTCAGCCT+CGG | 0.615868 | 5_3:+17388998 | None:intergenic |
GAATGATGACGGCAAACTCA+CGG | 0.619460 | 5_3:-17391449 | Msa0802760:CDS |
ATCTCTGCAACTTTCAAGTG+GGG | 0.619601 | 5_3:-17391745 | Msa0802760:five_prime_UTR |
ATGAGGAATCGGAGACGCGG+TGG | 0.623975 | 5_3:+17391420 | None:intergenic |
ATATGGTGCCTCTACCGGCA+AGG | 0.642432 | 5_3:-17389344 | Msa0802760:intron |
CAGCTGAAGAAGAATGATGA+CGG | 0.644743 | 5_3:-17391460 | Msa0802760:CDS |
TGATATGTTGGTGGTGAAGG+TGG | 0.650951 | 5_3:+17391481 | None:intergenic |
TGAGAGGTGGTGGAGTTGCA+GGG | 0.670313 | 5_3:+17391679 | None:intergenic |
CCGACTATGGAAAATGGCAA+GGG | 0.671837 | 5_3:-17387425 | Msa0802760:CDS |
GAACCCTTATGGATCAAAGG+AGG | 0.684609 | 5_3:-17387394 | Msa0802760:CDS |
AGGATGAGGAATCGGAGACG+CGG | 0.692644 | 5_3:+17391417 | None:intergenic |
AGAGGCGTGGTTCTTCACAG+CGG | 0.773437 | 5_3:-17388989 | Msa0802760:CDS |
TGATGACGGCAAACTCACGG+TGG | 0.787140 | 5_3:-17391446 | Msa0802760:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATAGGATTTTTTTTTTTTT+TGG | + | chr5_3:17387257-17387276 | None:intergenic | 10.0% |
!! | TTTAATTCTAATTCTTTAAA+AGG | + | chr5_3:17388806-17388825 | None:intergenic | 10.0% |
!! | ATTTATAGAAAAACTAAATA+GGG | + | chr5_3:17389245-17389264 | None:intergenic | 10.0% |
!! | AATTTATAGAAAAACTAAAT+AGG | + | chr5_3:17389246-17389265 | None:intergenic | 10.0% |
!!! | TGATTAATTTGAAAAACATA+AGG | + | chr5_3:17387781-17387800 | None:intergenic | 15.0% |
!! | CAACAAAAATATAGTTTATT+TGG | - | chr5_3:17388013-17388032 | Msa0802760:intron | 15.0% |
!!! | ATTTTTTGTTTGTTTGTTTA+GGG | + | chr5_3:17388452-17388471 | None:intergenic | 15.0% |
!! | AAATTAAGAAAGTAAAACAA+AGG | + | chr5_3:17388636-17388655 | None:intergenic | 15.0% |
!! | TAAAAAATGAATATGTACAT+TGG | - | chr5_3:17389346-17389365 | Msa0802760:CDS | 15.0% |
!!! | ACTTTTATTATTTAAGTTGT+TGG | + | chr5_3:17390315-17390334 | None:intergenic | 15.0% |
!! | TAAATAATAAAAGTGAGTTT+CGG | - | chr5_3:17390321-17390340 | Msa0802760:intron | 15.0% |
!! | TTTATATGATAAATACATTG+AGG | - | chr5_3:17391322-17391341 | Msa0802760:CDS | 15.0% |
!!! | CTTATGCTATAATAATTTGT+GGG | + | chr5_3:17387349-17387368 | None:intergenic | 20.0% |
!! | ACTTAGAGAAAATTTCAAAA+TGG | + | chr5_3:17387383-17387402 | None:intergenic | 20.0% |
!! | ATCAAGATAATACAAAACAA+GGG | + | chr5_3:17387964-17387983 | None:intergenic | 20.0% |
!!! | TATAGTTTATTTGGTTTTAG+TGG | - | chr5_3:17388022-17388041 | Msa0802760:intron | 20.0% |
!!! | ATAGTTTATTTGGTTTTAGT+GGG | - | chr5_3:17388023-17388042 | Msa0802760:intron | 20.0% |
!! | TATTATGTTAATCTATGCAT+TGG | - | chr5_3:17388073-17388092 | Msa0802760:intron | 20.0% |
!!! | CATTTTTTGTTTGTTTGTTT+AGG | + | chr5_3:17388453-17388472 | None:intergenic | 20.0% |
!! | ATGAAAAAGTTAAAGTGAAA+AGG | - | chr5_3:17388470-17388489 | Msa0802760:intron | 20.0% |
!!! | CTTTAAAAGGAAAATAATGT+TGG | + | chr5_3:17388793-17388812 | None:intergenic | 20.0% |
!! | GAAAATGATAAATGTATGTT+TGG | - | chr5_3:17388826-17388845 | Msa0802760:intron | 20.0% |
!!! | ATATTTGATTTTGACATGTT+TGG | - | chr5_3:17388889-17388908 | Msa0802760:intron | 20.0% |
!! | ATGTCTAATAGTAAATTGAA+TGG | + | chr5_3:17389063-17389082 | None:intergenic | 20.0% |
!! | GAACTTCAAATCAATAATAA+TGG | + | chr5_3:17389223-17389242 | None:intergenic | 20.0% |
!! | ATTCAATTAAACACATAACA+AGG | - | chr5_3:17389434-17389453 | Msa0802760:intron | 20.0% |
!!! | TTTAATCATTTGCATTTTGT+AGG | + | chr5_3:17390239-17390258 | None:intergenic | 20.0% |
!! | ATGTGTCTTTCATTTATTAA+CGG | - | chr5_3:17390289-17390308 | Msa0802760:intron | 20.0% |
!! | ATTTACTTACATGTATTACA+AGG | + | chr5_3:17390488-17390507 | None:intergenic | 20.0% |
!!! | TTTATTTCTTTTGACATTCA+AGG | - | chr5_3:17390543-17390562 | Msa0802760:intron | 20.0% |
!!! | TTTGGATTTTATACTATACA+TGG | - | chr5_3:17390614-17390633 | Msa0802760:intron | 20.0% |
!! | GAAAAAAAAATGTCAACTAT+AGG | + | chr5_3:17391288-17391307 | None:intergenic | 20.0% |
!! | ATTTATCATATAAACTAGTG+AGG | + | chr5_3:17391316-17391335 | None:intergenic | 20.0% |
!!! | TTTAAACATGCTACAATTTT+AGG | + | chr5_3:17391413-17391432 | None:intergenic | 20.0% |
! | CCTTATGCTATAATAATTTG+TGG | + | chr5_3:17387350-17387369 | None:intergenic | 25.0% |
! | CCACAAATTATTATAGCATA+AGG | - | chr5_3:17387347-17387366 | Msa0802760:CDS | 25.0% |
! | ATTATAGCATAAGGTTCAAA+AGG | - | chr5_3:17387356-17387375 | Msa0802760:CDS | 25.0% |
! | TTATAGCATAAGGTTCAAAA+GGG | - | chr5_3:17387357-17387376 | Msa0802760:CDS | 25.0% |
!! | TTAACTTTGCTTTATTCTCA+TGG | - | chr5_3:17387664-17387683 | Msa0802760:intron | 25.0% |
! | CATCAAGATAATACAAAACA+AGG | + | chr5_3:17387965-17387984 | None:intergenic | 25.0% |
! | TACTCTTTCTCTTTCTTATT+AGG | - | chr5_3:17387990-17388009 | Msa0802760:intron | 25.0% |
!! | ATTGTCATTTCTTTGATGTA+TGG | + | chr5_3:17388328-17388347 | None:intergenic | 25.0% |
! | AAGTTAAAGTGAAAAGGAAA+AGG | - | chr5_3:17388476-17388495 | Msa0802760:intron | 25.0% |
! | AAAAAAGCAGCATGTATTTA+TGG | - | chr5_3:17388510-17388529 | Msa0802760:intron | 25.0% |
!! | TACCTTTGTTTAGATTCTAT+TGG | - | chr5_3:17388557-17388576 | Msa0802760:intron | 25.0% |
! | TTTGGATACATTGTAAAAGT+GGG | + | chr5_3:17389031-17389050 | None:intergenic | 25.0% |
! | ATTGAATGGTGATTTATGTT+TGG | + | chr5_3:17389049-17389068 | None:intergenic | 25.0% |
! | TGAAAAATCACAACATTCAA+AGG | + | chr5_3:17389171-17389190 | None:intergenic | 25.0% |
! | ATGGCAAAGTATATTATTAC+AGG | + | chr5_3:17389204-17389223 | None:intergenic | 25.0% |
! | GATGTAAATCAAACCATTTA+TGG | + | chr5_3:17389373-17389392 | None:intergenic | 25.0% |
!! | TTTTTGCTTCGACATTTATA+AGG | - | chr5_3:17390047-17390066 | Msa0802760:intron | 25.0% |
! | TTCGACATTTATAAGGTAAT+AGG | - | chr5_3:17390054-17390073 | Msa0802760:intron | 25.0% |
!!! | CTCATTTTTTAAGATGCATT+TGG | - | chr5_3:17390144-17390163 | Msa0802760:intron | 25.0% |
! | GAACATCAACAAAATAAAGA+AGG | - | chr5_3:17390449-17390468 | Msa0802760:intron | 25.0% |
!!! | AATGATTGATTCTCTAGTTT+TGG | - | chr5_3:17390596-17390615 | Msa0802760:intron | 25.0% |
! | ATCTATAAATCTAACACCAT+TGG | + | chr5_3:17390782-17390801 | None:intergenic | 25.0% |
! | AAAAAATAGCTTGAGTTTGT+TGG | - | chr5_3:17390932-17390951 | Msa0802760:intron | 25.0% |
! | TGGAATAACAACATTAAATG+TGG | + | chr5_3:17390990-17391009 | None:intergenic | 25.0% |
!!! | GGATCAATTTAAGGTATTTT+TGG | + | chr5_3:17391010-17391029 | None:intergenic | 25.0% |
! | AACATTACTGGATCAATTTA+AGG | + | chr5_3:17391019-17391038 | None:intergenic | 25.0% |
! | CCAATAAAATAGTTAAGAGT+TGG | + | chr5_3:17391122-17391141 | None:intergenic | 25.0% |
!! | CCAACTCTTAACTATTTTAT+TGG | - | chr5_3:17391119-17391138 | Msa0802760:intron | 25.0% |
! | CTTATTGTGTTAAATACATG+TGG | + | chr5_3:17391203-17391222 | None:intergenic | 25.0% |
! | ACTATAGGATGCAATTAAAA+TGG | + | chr5_3:17391273-17391292 | None:intergenic | 25.0% |
! | TGCAGATGATATGATTTAAT+TGG | + | chr5_3:17391372-17391391 | None:intergenic | 25.0% |
!!! | ACATGCTAAATTATTTTGCA+GGG | - | chr5_3:17391487-17391506 | Msa0802760:CDS | 25.0% |
!!! | GAACTTTTTTTTGTGATGAG+AGG | + | chr5_3:17387311-17387330 | None:intergenic | 30.0% |
! | TGCTATAATAATTTGTGGGT+AGG | + | chr5_3:17387345-17387364 | None:intergenic | 30.0% |
! | TTTTGTGTTGTGTGATGAAT+GGG | - | chr5_3:17387427-17387446 | Msa0802760:CDS | 30.0% |
GCAAAGTTAATCTTGCATAA+GGG | + | chr5_3:17387654-17387673 | None:intergenic | 30.0% | |
AGCAAAGTTAATCTTGCATA+AGG | + | chr5_3:17387655-17387674 | None:intergenic | 30.0% | |
TGATCTCTTTGTTCAACTTA+AGG | - | chr5_3:17387714-17387733 | Msa0802760:intron | 30.0% | |
TAATCTCAGAGTTAATCTCA+TGG | - | chr5_3:17387738-17387757 | Msa0802760:intron | 30.0% | |
AATCTCAGAGTTAATCTCAT+GGG | - | chr5_3:17387739-17387758 | Msa0802760:intron | 30.0% | |
ATTAGTCGAAATCGAAATCA+TGG | - | chr5_3:17388214-17388233 | Msa0802760:intron | 30.0% | |
GTAGAAAGTAGATGAAGTTA+AGG | - | chr5_3:17388403-17388422 | Msa0802760:intron | 30.0% | |
AAAGTGAAAAGGAAAAGGAA+AGG | - | chr5_3:17388481-17388500 | Msa0802760:intron | 30.0% | |
AAGTGAAAAGGAAAAGGAAA+GGG | - | chr5_3:17388482-17388501 | Msa0802760:intron | 30.0% | |
ACTACCAAGAAGAAAAAGTT+AGG | + | chr5_3:17388583-17388602 | None:intergenic | 30.0% | |
!!! | AGAGTTTTTTGGTGTTTTTG+TGG | - | chr5_3:17388715-17388734 | Msa0802760:intron | 30.0% |
!!! | GAGTTTTTTGGTGTTTTTGT+GGG | - | chr5_3:17388716-17388735 | Msa0802760:intron | 30.0% |
!!! | AGTTTTTTGGTGTTTTTGTG+GGG | - | chr5_3:17388717-17388736 | Msa0802760:intron | 30.0% |
!! | GGAAAATAATGTTGGTAGTA+GGG | + | chr5_3:17388785-17388804 | None:intergenic | 30.0% |
!! | AGGAAAATAATGTTGGTAGT+AGG | + | chr5_3:17388786-17388805 | None:intergenic | 30.0% |
! | GATAAATGTATGTTTGGTTC+CGG | - | chr5_3:17388832-17388851 | Msa0802760:intron | 30.0% |
GTTTGGATACATTGTAAAAG+TGG | + | chr5_3:17389032-17389051 | None:intergenic | 30.0% | |
!! | ATTTGCTTTGGAAGTTTCAT+CGG | - | chr5_3:17389287-17389306 | Msa0802760:intron | 30.0% |
GTTTCATCGGAATATACTAT+TGG | - | chr5_3:17389300-17389319 | Msa0802760:intron | 30.0% | |
TATGTACATTGGTCCATAAA+TGG | - | chr5_3:17389357-17389376 | Msa0802760:CDS | 30.0% | |
!!! | ATGCCTAGTTTTGTATACTT+AGG | - | chr5_3:17390350-17390369 | Msa0802760:intron | 30.0% |
TCTCCTAAGTATACAAAACT+AGG | + | chr5_3:17390356-17390375 | None:intergenic | 30.0% | |
! | TATTTTGTTGATGTTCTGCA+TGG | + | chr5_3:17390445-17390464 | None:intergenic | 30.0% |
! | AACCAATTTTCCATTAAGAG+AGG | - | chr5_3:17390724-17390743 | Msa0802760:intron | 30.0% |
AACCTCTCTTAATGGAAAAT+TGG | + | chr5_3:17390729-17390748 | None:intergenic | 30.0% | |
! | AATTTTCCATTAAGAGAGGT+TGG | - | chr5_3:17390728-17390747 | Msa0802760:intron | 30.0% |
! | TCTAACACCATTGGATTTTA+TGG | + | chr5_3:17390773-17390792 | None:intergenic | 30.0% |
CTATTTACGTCATTCTCTAT+TGG | - | chr5_3:17390805-17390824 | Msa0802760:intron | 30.0% | |
! | ATTGATCCAGTAATGTTTTG+AGG | - | chr5_3:17391022-17391041 | Msa0802760:intron | 30.0% |
TGAGAACGAAAATGTTATGA+TGG | - | chr5_3:17391464-17391483 | Msa0802760:CDS | 30.0% | |
!! | GACATGCTAAATTATTTTGC+AGG | - | chr5_3:17391486-17391505 | Msa0802760:CDS | 30.0% |
ATGCAAATTCATCCAAGAAA+TGG | - | chr5_3:17391645-17391664 | Msa0802760:five_prime_UTR | 30.0% | |
!!! | ATTTTGATTCCAGACTTTGT+CGG | + | chr5_3:17391705-17391724 | None:intergenic | 30.0% |
AAATCTCTGCAACTTTCAAG+TGG | - | chr5_3:17387224-17387243 | Msa0802760:intron | 35.0% | |
! | AATCTCTGCAACTTTCAAGT+GGG | - | chr5_3:17387225-17387244 | Msa0802760:intron | 35.0% |
!!! | CTTTTTTTTGTGATGAGAGG+TGG | + | chr5_3:17387308-17387327 | None:intergenic | 35.0% |
! | GTTTTGTGTTGTGTGATGAA+TGG | - | chr5_3:17387426-17387445 | Msa0802760:CDS | 35.0% |
TTCTTCTTCAGCTGATATGT+TGG | + | chr5_3:17387505-17387524 | None:intergenic | 35.0% | |
TTATCATCAGGATGAGGAAT+CGG | + | chr5_3:17387565-17387584 | None:intergenic | 35.0% | |
AATGAGTTATCATCAGGATG+AGG | + | chr5_3:17387571-17387590 | None:intergenic | 35.0% | |
TCATCCTGATGATAACTCAT+TGG | - | chr5_3:17387570-17387589 | Msa0802760:intron | 35.0% | |
ACATCCAATGAGTTATCATC+AGG | + | chr5_3:17387577-17387596 | None:intergenic | 35.0% | |
CTTCTTGTTGACACAAAACA+TGG | - | chr5_3:17387598-17387617 | Msa0802760:intron | 35.0% | |
ATCTCAGAGTTAATCTCATG+GGG | - | chr5_3:17387740-17387759 | Msa0802760:intron | 35.0% | |
TAATACAAAACAAGGGTCAG+TGG | + | chr5_3:17387957-17387976 | None:intergenic | 35.0% | |
!! | GTGAGTATGTGTTTTAGATC+TGG | - | chr5_3:17388132-17388151 | Msa0802760:intron | 35.0% |
!! | AGTATGTGTTTTAGATCTGG+TGG | - | chr5_3:17388135-17388154 | Msa0802760:intron | 35.0% |
TGATGTGCATGTTTGGTATA+AGG | - | chr5_3:17388187-17388206 | Msa0802760:intron | 35.0% | |
GGCCAATAGAATCTAAACAA+AGG | + | chr5_3:17388562-17388581 | None:intergenic | 35.0% | |
!! | TTGGCCTAACTTTTTCTTCT+TGG | - | chr5_3:17388576-17388595 | Msa0802760:intron | 35.0% |
!!! | GGACATAGCATAGAGTTTTT+TGG | - | chr5_3:17388704-17388723 | Msa0802760:intron | 35.0% |
AAGCTTTCAAAGAACACCAA+GGG | + | chr5_3:17388749-17388768 | None:intergenic | 35.0% | |
AAAGCTTTCAAAGAACACCA+AGG | + | chr5_3:17388750-17388769 | None:intergenic | 35.0% | |
AAGTTAGAGTCAATTCTGGA+AGG | + | chr5_3:17388938-17388957 | None:intergenic | 35.0% | |
CATCAAGTTAGAGTCAATTC+TGG | + | chr5_3:17388942-17388961 | None:intergenic | 35.0% | |
TCTAACTTGATGCGAGAATT+CGG | - | chr5_3:17388950-17388969 | Msa0802760:CDS | 35.0% | |
!! | TGGGTTGATCAGAAAATTTG+AGG | + | chr5_3:17389012-17389031 | None:intergenic | 35.0% |
CATTTGAGTCACATTTGCTT+TGG | - | chr5_3:17389275-17389294 | Msa0802760:intron | 35.0% | |
AGGTATGACTATTCTGGATA+TGG | - | chr5_3:17389610-17389629 | Msa0802760:intron | 35.0% | |
!! | AGTTAGTTCTGTTGCAATGA+TGG | - | chr5_3:17389678-17389697 | Msa0802760:intron | 35.0% |
GAATGCCTTGAAACCAAATA+TGG | - | chr5_3:17389874-17389893 | Msa0802760:intron | 35.0% | |
! | CAACTCCATATTTGGTTTCA+AGG | + | chr5_3:17389882-17389901 | None:intergenic | 35.0% |
CTTGAAACCAAATATGGAGT+TGG | - | chr5_3:17389880-17389899 | Msa0802760:intron | 35.0% | |
CAGGAAGACGTAATCTTATA+CGG | - | chr5_3:17389904-17389923 | Msa0802760:intron | 35.0% | |
AGGAAGACGTAATCTTATAC+GGG | - | chr5_3:17389905-17389924 | Msa0802760:intron | 35.0% | |
CTTACATGTATTACAAGGAC+AGG | + | chr5_3:17390483-17390502 | None:intergenic | 35.0% | |
ACCAATGCCATAAAATCCAA+TGG | - | chr5_3:17390763-17390782 | Msa0802760:intron | 35.0% | |
! | ACCATTGGATTTTATGGCAT+TGG | + | chr5_3:17390767-17390786 | None:intergenic | 35.0% |
TGATCTCCTCAAAACATTAC+TGG | + | chr5_3:17391031-17391050 | None:intergenic | 35.0% | |
AGGAGATCACCATCATAATT+AGG | - | chr5_3:17391042-17391061 | Msa0802760:intron | 35.0% | |
GGAGATCACCATCATAATTA+GGG | - | chr5_3:17391043-17391062 | Msa0802760:intron | 35.0% | |
GAGATCACCATCATAATTAG+GGG | - | chr5_3:17391044-17391063 | Msa0802760:intron | 35.0% | |
TAACCTACCCCTAATTATGA+TGG | + | chr5_3:17391054-17391073 | None:intergenic | 35.0% | |
TATGAACCCTTATGGATCAA+AGG | - | chr5_3:17391574-17391593 | Msa0802760:five_prime_UTR | 35.0% | |
ATAGATGGCGTATGTAATCA+GGG | + | chr5_3:17391627-17391646 | None:intergenic | 35.0% | |
CTTGGATGAATTTGCATAGA+TGG | + | chr5_3:17391642-17391661 | None:intergenic | 35.0% | |
TTGTCATCTTCTCCATTTCT+TGG | + | chr5_3:17391660-17391679 | None:intergenic | 35.0% | |
TGTAGTACAGTGAGAAGATG+TGG | + | chr5_3:17387140-17387159 | None:intergenic | 40.0% | |
GTTGCAGCAGAAACTAGTTA+TGG | + | chr5_3:17387174-17387193 | None:intergenic | 40.0% | |
! | ATCTCTGCAACTTTCAAGTG+GGG | - | chr5_3:17387226-17387245 | Msa0802760:intron | 40.0% |
! | GGTACAGTGATGATGAGAAT+AGG | + | chr5_3:17387274-17387293 | None:intergenic | 40.0% |
!!! | TTTTTTGTGATGAGAGGTGG+TGG | + | chr5_3:17387305-17387324 | None:intergenic | 40.0% |
TTCTTCAGCTGATATGTTGG+TGG | + | chr5_3:17387502-17387521 | None:intergenic | 40.0% | |
CAGCTGAAGAAGAATGATGA+CGG | - | chr5_3:17387511-17387530 | Msa0802760:intron | 40.0% | |
GTGAATGTGATGTGCATGTT+TGG | - | chr5_3:17388180-17388199 | Msa0802760:intron | 40.0% | |
AGTCGAAATCGAAATCATGG+TGG | - | chr5_3:17388217-17388236 | Msa0802760:intron | 40.0% | |
TTTGATGTATGGTATCACCG+TGG | + | chr5_3:17388317-17388336 | None:intergenic | 40.0% | |
GTAGATGAAGTTAAGGCTTC+TGG | - | chr5_3:17388410-17388429 | Msa0802760:intron | 40.0% | |
! | TTCCAGTTTTTACCCCTACA+TGG | - | chr5_3:17388677-17388696 | Msa0802760:intron | 40.0% |
ATCCATGTAGGGGTAAAAAC+TGG | + | chr5_3:17388682-17388701 | None:intergenic | 40.0% | |
! | TTTTTACCCCTACATGGATG+TGG | - | chr5_3:17388683-17388702 | Msa0802760:intron | 40.0% |
!!! | TTTTGGTGTTTTTGTGGGGA+TGG | - | chr5_3:17388721-17388740 | Msa0802760:intron | 40.0% |
!! | GTATGTTTGGTTCCGGTTTT+TGG | - | chr5_3:17388839-17388858 | Msa0802760:intron | 40.0% |
! | ATTTTGCCTCCTCCAAAAAC+CGG | + | chr5_3:17388854-17388873 | None:intergenic | 40.0% |
GTGCAGGATAAGAAAATGCT+TGG | + | chr5_3:17389149-17389168 | None:intergenic | 40.0% | |
! | ATCACAACATTCAAAGGTGC+AGG | + | chr5_3:17389165-17389184 | None:intergenic | 40.0% |
! | GTTTGCCAATTGACTCTTGA+CGG | - | chr5_3:17389399-17389418 | Msa0802760:intron | 40.0% |
ATAGACCGTCAAGAGTCAAT+TGG | + | chr5_3:17389407-17389426 | None:intergenic | 40.0% | |
! | CAGCTTTAGTCTAGAAATGC+TGG | + | chr5_3:17389550-17389569 | None:intergenic | 40.0% |
!!! | ACGTTTTTTTTTCTTCCCGC+AGG | - | chr5_3:17389590-17389609 | Msa0802760:intron | 40.0% |
ATCCAGAATAGTCATACCTG+CGG | + | chr5_3:17389609-17389628 | None:intergenic | 40.0% | |
CGTATAAGATTACGTCTTCC+TGG | + | chr5_3:17389906-17389925 | None:intergenic | 40.0% | |
ATCTTATACGGGCAATCAGT+TGG | - | chr5_3:17389916-17389935 | Msa0802760:intron | 40.0% | |
AAGTGGACCAACATTGCATT+TGG | - | chr5_3:17389939-17389958 | Msa0802760:intron | 40.0% | |
TTGTTGATGTTCTGCATGGT+CGG | + | chr5_3:17390441-17390460 | None:intergenic | 40.0% | |
ATGAAATTCAAGCAGGATGG+TGG | + | chr5_3:17390654-17390673 | None:intergenic | 40.0% | |
ACCATCCTGCTTGAATTTCA+TGG | - | chr5_3:17390653-17390672 | Msa0802760:intron | 40.0% | |
ACCATGAAATTCAAGCAGGA+TGG | + | chr5_3:17390657-17390676 | None:intergenic | 40.0% | |
AGCTACCATGAAATTCAAGC+AGG | + | chr5_3:17390661-17390680 | None:intergenic | 40.0% | |
GCTTGAATTTCATGGTAGCT+AGG | - | chr5_3:17390661-17390680 | Msa0802760:intron | 40.0% | |
ACGACTAGAGAAAGAACACA+AGG | + | chr5_3:17390687-17390706 | None:intergenic | 40.0% | |
ATGTAGCCAACCTCTCTTAA+TGG | + | chr5_3:17390737-17390756 | None:intergenic | 40.0% | |
! | TCGATGGCCTGTAGATTTTA+AGG | - | chr5_3:17390828-17390847 | Msa0802760:intron | 40.0% |
CGGTAGACCTTAAAATCTAC+AGG | + | chr5_3:17390838-17390857 | None:intergenic | 40.0% | |
TACCGCCTCTAACAAATGTA+TGG | - | chr5_3:17390853-17390872 | Msa0802760:intron | 40.0% | |
! | CACCATACATTTGTTAGAGG+CGG | + | chr5_3:17390858-17390877 | None:intergenic | 40.0% |
! | CTGCACCATACATTTGTTAG+AGG | + | chr5_3:17390861-17390880 | None:intergenic | 40.0% |
TCACCATCATAATTAGGGGT+AGG | - | chr5_3:17391048-17391067 | Msa0802760:intron | 40.0% | |
! | TGTGGGATCTAGTTCCAAAA+TGG | + | chr5_3:17391166-17391185 | None:intergenic | 40.0% |
TAGATCCCACATCTAGTGTT+GGG | - | chr5_3:17391175-17391194 | Msa0802760:intron | 40.0% | |
CAGAAGATGACGTAGTCAAT+TGG | - | chr5_3:17391512-17391531 | Msa0802760:CDS | 40.0% | |
GACGTAGTCAATTGGTTACA+TGG | - | chr5_3:17391520-17391539 | Msa0802760:CDS | 40.0% | |
CATAGATGGCGTATGTAATC+AGG | + | chr5_3:17391628-17391647 | None:intergenic | 40.0% | |
! | GACTTTGTCGGATCTTTTTG+AGG | + | chr5_3:17391693-17391712 | None:intergenic | 40.0% |
CAAAAAGATCCGACAAAGTC+TGG | - | chr5_3:17391693-17391712 | Msa0802760:five_prime_UTR | 40.0% | |
TGCAGCAACACTTCATACTA+GGG | + | chr5_3:17391759-17391778 | None:intergenic | 40.0% | |
!! | TGTGTGATGAATGGGTTGCA+TGG | - | chr5_3:17387435-17387454 | Msa0802760:CDS | 45.0% |
!! | TGATATGTTGGTGGTGAAGG+TGG | + | chr5_3:17387493-17387512 | None:intergenic | 45.0% |
!! | AGCTGATATGTTGGTGGTGA+AGG | + | chr5_3:17387496-17387515 | None:intergenic | 45.0% |
!! | GAATGATGACGGCAAACTCA+CGG | - | chr5_3:17387522-17387541 | Msa0802760:intron | 45.0% |
!! | CATGGCAATGCTGCTGATTT+AGG | - | chr5_3:17387682-17387701 | Msa0802760:intron | 45.0% |
TGGTTACTCGAAATCACGGT+GGG | + | chr5_3:17388297-17388316 | None:intergenic | 45.0% | |
! | ACCGTGATTTCGAGTAACCA+CGG | - | chr5_3:17388297-17388316 | Msa0802760:intron | 45.0% |
ACCGTGGTTACTCGAAATCA+CGG | + | chr5_3:17388301-17388320 | None:intergenic | 45.0% | |
CTATGTCCACATCCATGTAG+GGG | + | chr5_3:17388692-17388711 | None:intergenic | 45.0% | |
GCTATGTCCACATCCATGTA+GGG | + | chr5_3:17388693-17388712 | None:intergenic | 45.0% | |
TGCTATGTCCACATCCATGT+AGG | + | chr5_3:17388694-17388713 | None:intergenic | 45.0% | |
!! | TGTTTGGTTCCGGTTTTTGG+AGG | - | chr5_3:17388842-17388861 | Msa0802760:intron | 45.0% |
! | GGAGGAGGCAAAATTGATTC+TGG | - | chr5_3:17388860-17388879 | Msa0802760:intron | 45.0% |
GAAAATGCTTGGCGTGTGTA+TGG | + | chr5_3:17389138-17389157 | None:intergenic | 45.0% | |
TCCAGAATAGTCATACCTGC+GGG | + | chr5_3:17389608-17389627 | None:intergenic | 45.0% | |
CAAAGAATAGCCTACCTTGC+CGG | + | chr5_3:17389644-17389663 | None:intergenic | 45.0% | |
GCATATGTGCTGGATTCACT+AGG | + | chr5_3:17389835-17389854 | None:intergenic | 45.0% | |
CTCTATGTCAGCATATGTGC+TGG | + | chr5_3:17389845-17389864 | None:intergenic | 45.0% | |
CAGCACATATGCTGACATAG+AGG | - | chr5_3:17389843-17389862 | Msa0802760:intron | 45.0% | |
AACCAAATATGGAGTTGGCC+AGG | - | chr5_3:17389885-17389904 | Msa0802760:intron | 45.0% | |
TTCCTGGCCAACTCCATATT+TGG | + | chr5_3:17389890-17389909 | None:intergenic | 45.0% | |
TTGGCTGCCAAATGCAATGT+TGG | + | chr5_3:17389949-17389968 | None:intergenic | 45.0% | |
CTTCACAGCGGAATTCTTTC+TGG | - | chr5_3:17389994-17390013 | Msa0802760:intron | 45.0% | |
TGTTCTGCATGGTCGGAAAA+GGG | + | chr5_3:17390434-17390453 | None:intergenic | 45.0% | |
ATGTTCTGCATGGTCGGAAA+AGG | + | chr5_3:17390435-17390454 | None:intergenic | 45.0% | |
CGTCATTCTCTATTGGTCGA+TGG | - | chr5_3:17390812-17390831 | Msa0802760:intron | 45.0% | |
! | GCACATGTGTCTCACCATTT+TGG | - | chr5_3:17391149-17391168 | Msa0802760:intron | 45.0% |
CTAGATCCCACATCTAGTGT+TGG | - | chr5_3:17391174-17391193 | Msa0802760:intron | 45.0% | |
TGGCAACCGACTATGGAAAA+TGG | - | chr5_3:17391540-17391559 | Msa0802760:exon | 45.0% | |
ACCGACTATGGAAAATGGCA+AGG | - | chr5_3:17391545-17391564 | Msa0802760:exon | 45.0% | |
!!! | CCCTTGCCATTTTCCATAGT+CGG | + | chr5_3:17391549-17391568 | None:intergenic | 45.0% |
CCGACTATGGAAAATGGCAA+GGG | - | chr5_3:17391546-17391565 | Msa0802760:exon | 45.0% | |
GGGAGTCATATGAACCCTTA+TGG | - | chr5_3:17391566-17391585 | Msa0802760:five_prime_UTR | 45.0% | |
GAACCCTTATGGATCAAAGG+AGG | - | chr5_3:17391577-17391596 | Msa0802760:five_prime_UTR | 45.0% | |
CATACTAGGGCATGTACATG+TGG | + | chr5_3:17391746-17391765 | None:intergenic | 45.0% | |
CTGCAGCAACACTTCATACT+AGG | + | chr5_3:17391760-17391779 | None:intergenic | 45.0% | |
!!! | AATGATTAAATTATATATTT+TGG | - | chr5_3:17390249-17390268 | Msa0802760:intron | 5.0% |
TCAGAGAGAGAGAGAGAGTG+AGG | + | chr5_3:17387204-17387223 | None:intergenic | 50.0% | |
GTGGTTACTCGAAATCACGG+TGG | + | chr5_3:17388298-17388317 | None:intergenic | 50.0% | |
TTAAGGCTTCTGGCACCAGA+GGG | - | chr5_3:17388420-17388439 | Msa0802760:intron | 50.0% | |
TGTTTAGGGAAGACACCCTC+TGG | + | chr5_3:17388438-17388457 | None:intergenic | 50.0% | |
!! | TTGGTTCCGGTTTTTGGAGG+AGG | - | chr5_3:17388845-17388864 | Msa0802760:intron | 50.0% |
TCCCGCAGGTATGACTATTC+TGG | - | chr5_3:17389604-17389623 | Msa0802760:intron | 50.0% | |
TCTGGATATGGTGCCTCTAC+CGG | - | chr5_3:17389622-17389641 | Msa0802760:intron | 50.0% | |
CGGCAAGGTAGGCTATTCTT+TGG | - | chr5_3:17389642-17389661 | Msa0802760:intron | 50.0% | |
TACGGGCAATCAGTTGGAAG+TGG | - | chr5_3:17389922-17389941 | Msa0802760:intron | 50.0% | |
TGGAGCCCAACACTAGATGT+GGG | + | chr5_3:17391183-17391202 | None:intergenic | 50.0% | |
GGTTACATGGCAACCGACTA+TGG | - | chr5_3:17391533-17391552 | Msa0802760:exon | 50.0% | |
CCGCCTCCTTTGATCCATAA+GGG | + | chr5_3:17391583-17391602 | None:intergenic | 50.0% | |
CCCTTATGGATCAAAGGAGG+CGG | - | chr5_3:17391580-17391599 | Msa0802760:five_prime_UTR | 50.0% | |
ACCGCCTCCTTTGATCCATA+AGG | + | chr5_3:17391584-17391603 | None:intergenic | 50.0% | |
! | CTGCAGCAGCTAGAGCATTT+AGG | + | chr5_3:17391799-17391818 | None:intergenic | 50.0% |
! | CTGCAGCAGCTAGAGCATTT+AGG | + | chr5_3:17391799-17391818 | None:intergenic | 50.0% |
!! | TGAGAGGTGGTGGAGTTGCA+GGG | + | chr5_3:17387295-17387314 | None:intergenic | 55.0% |
!! | ATGAGAGGTGGTGGAGTTGC+AGG | + | chr5_3:17387296-17387315 | None:intergenic | 55.0% |
!! | TGATGACGGCAAACTCACGG+TGG | - | chr5_3:17387525-17387544 | Msa0802760:intron | 55.0% |
AGGATGAGGAATCGGAGACG+CGG | + | chr5_3:17387557-17387576 | None:intergenic | 55.0% | |
GTTAAGGCTTCTGGCACCAG+AGG | - | chr5_3:17388419-17388438 | Msa0802760:intron | 55.0% | |
! | TTTTGTGGGGATGGAGCCCT+TGG | - | chr5_3:17388730-17388749 | Msa0802760:intron | 55.0% |
ATATGGTGCCTCTACCGGCA+AGG | - | chr5_3:17389627-17389646 | Msa0802760:intron | 55.0% | |
ATAGCCTACCTTGCCGGTAG+AGG | + | chr5_3:17389638-17389657 | None:intergenic | 55.0% | |
CACGCACACAGACACTCACA+AGG | - | chr5_3:17389721-17389740 | Msa0802760:intron | 55.0% | |
ATTTGGCAGCCAAGTTGCCG+AGG | - | chr5_3:17389956-17389975 | Msa0802760:intron | 55.0% | |
! | AGAGGCGTGGTTCTTCACAG+CGG | - | chr5_3:17389982-17390001 | Msa0802760:intron | 55.0% |
GTGGAGCCCAACACTAGATG+TGG | + | chr5_3:17391184-17391203 | None:intergenic | 55.0% | |
ATGAGGAATCGGAGACGCGG+TGG | + | chr5_3:17387554-17387573 | None:intergenic | 60.0% | |
AGAACCACGCCTCTCAGCCT+CGG | + | chr5_3:17389976-17389995 | None:intergenic | 60.0% | |
GGTGCCTCTACCGGCAAGGT+AGG | - | chr5_3:17389631-17389650 | Msa0802760:intron | 65.0% | |
GCCAAGTTGCCGAGGCTGAG+AGG | - | chr5_3:17389964-17389983 | Msa0802760:intron | 65.0% | |
GCCTCTCAGCCTCGGCAACT+TGG | + | chr5_3:17389968-17389987 | None:intergenic | 65.0% | |
GTTGCCGAGGCTGAGAGGCG+TGG | - | chr5_3:17389969-17389988 | Msa0802760:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_3 | gene | 17387110 | 17391883 | 17387110 | ID=Msa0802760;Name=Msa0802760 |
chr5_3 | mRNA | 17387110 | 17391883 | 17387110 | ID=Msa0802760-mRNA-1;Parent=Msa0802760;Name=Msa0802760-mRNA-1;_AED=0.18;_eAED=0.18;_QI=335|0.5|0.6|1|1|1|5|0|292 |
chr5_3 | exon | 17387110 | 17387156 | 17387110 | ID=Msa0802760-mRNA-1:exon:7260;Parent=Msa0802760-mRNA-1 |
chr5_3 | exon | 17387245 | 17387485 | 17387245 | ID=Msa0802760-mRNA-1:exon:7259;Parent=Msa0802760-mRNA-1 |
chr5_3 | exon | 17388925 | 17389161 | 17388925 | ID=Msa0802760-mRNA-1:exon:7258;Parent=Msa0802760-mRNA-1 |
chr5_3 | exon | 17389345 | 17389381 | 17389345 | ID=Msa0802760-mRNA-1:exon:7257;Parent=Msa0802760-mRNA-1 |
chr5_3 | exon | 17391232 | 17391883 | 17391232 | ID=Msa0802760-mRNA-1:exon:7256;Parent=Msa0802760-mRNA-1 |
chr5_3 | five_prime_UTR | 17391549 | 17391883 | 17391549 | ID=Msa0802760-mRNA-1:five_prime_utr;Parent=Msa0802760-mRNA-1 |
chr5_3 | CDS | 17391232 | 17391548 | 17391232 | ID=Msa0802760-mRNA-1:cds;Parent=Msa0802760-mRNA-1 |
chr5_3 | CDS | 17389345 | 17389381 | 17389345 | ID=Msa0802760-mRNA-1:cds;Parent=Msa0802760-mRNA-1 |
chr5_3 | CDS | 17388925 | 17389161 | 17388925 | ID=Msa0802760-mRNA-1:cds;Parent=Msa0802760-mRNA-1 |
chr5_3 | CDS | 17387245 | 17387485 | 17387245 | ID=Msa0802760-mRNA-1:cds;Parent=Msa0802760-mRNA-1 |
chr5_3 | CDS | 17387110 | 17387156 | 17387110 | ID=Msa0802760-mRNA-1:cds;Parent=Msa0802760-mRNA-1 |
Gene Sequence |
Protein sequence |