AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0467980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467980 MtrunA17_Chr3g0122171 94.750 400 18 2 1 398 1 399 0.0 695
Msa0467980 MtrunA17_Chr2g0293821 27.368 190 121 4 93 282 160 332 1.49e-16 80.9
Msa0467980 MtrunA17_Chr8g0386481 22.343 367 202 11 101 397 534 887 1.65e-16 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467980 AT3G23700.1 69.799 298 90 0 101 398 95 392 1.01e-147 424
Msa0467980 AT1G12800.1 27.778 252 162 7 154 397 527 766 3.16e-19 90.5
Msa0467980 AT5G30510.1 30.526 190 114 3 93 282 167 338 8.19e-19 88.2

Find 124 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTGGTTTGGATTGAATTT+TGG 0.180002 3_3:-69488055 None:intergenic
CAGCTTTCACATTTATTTAA+AGG 0.189630 3_3:+69493421 Msa0467980:three_prime_UTR
GGTAACTTGCGAGGGCATTT+AGG 0.208511 3_3:-69488257 None:intergenic
TCAACTCTCTTGCAAGTTCT+TGG 0.229040 3_3:-69489540 None:intergenic
CATTTAACTAACTCGCAAAA+AGG 0.276793 3_3:+69493487 Msa0467980:three_prime_UTR
AGAGGAAGAGGAAGATGAAT+TGG 0.327518 3_3:-69488072 None:intergenic
TCTCACAAGACTTGCAGCTT+TGG 0.347827 3_3:+69492888 Msa0467980:CDS
AAGAGGAAGATGAATTGGTT+TGG 0.348535 3_3:-69488067 None:intergenic
CAGTCGCATCGATCCCTTAC+CGG 0.359860 3_3:+69491264 Msa0467980:CDS
GTAACTTGCGAGGGCATTTA+GGG 0.363821 3_3:-69488256 None:intergenic
ATGCTGGAGGCCTGCTGGTT+CGG 0.365464 3_3:+69489150 Msa0467980:CDS
GAACCAATTCGCGTTGTTGA+TGG 0.375682 3_3:-69488104 None:intergenic
CGGGGCTCAGCTGTGGGAAC+GGG 0.388395 3_3:-69489196 None:intergenic
CCACCATCAACAACGCGAAT+TGG 0.391519 3_3:+69488101 Msa0467980:five_prime_UTR
TAGTTAAATGAATCACGATT+TGG 0.393801 3_3:-69493474 None:intergenic
AACCGACTCTTGCTTCAAAA+AGG 0.402684 3_3:-69490041 None:intergenic
TATCTGAAAAGGAAGCTTCA+TGG 0.403011 3_3:+69489986 Msa0467980:CDS
GTCGGTTCTGTTGAGGACTA+TGG 0.403821 3_3:+69490057 Msa0467980:CDS
GCAGGTCTTTATCACCTTAC+CGG 0.410702 3_3:+69490193 Msa0467980:intron
ATGATGCTCTTCGTCAAGCC+AGG 0.415476 3_3:+69488414 Msa0467980:CDS
TGACCAGGAAGGCATCAAAA+AGG 0.417349 3_3:+69493318 Msa0467980:CDS
TAAAGTAAATTGTCAATAAA+CGG 0.417990 3_3:-69493526 None:intergenic
CATCGATCCCTTACCGGGGC+TGG 0.420951 3_3:+69491270 Msa0467980:CDS
TTCCGTTGTTGAACTCGAAA+TGG 0.425257 3_3:+69488124 Msa0467980:exon
TGGTGGAGAAGAAGAGGAAG+AGG 0.428601 3_3:-69488084 None:intergenic
GAAGAGCTATTGCAGGAAGA+TGG 0.434626 3_3:+69491304 Msa0467980:CDS
AGACGAGGAGAAACGGAAAT+TGG 0.435020 3_3:+69489960 Msa0467980:CDS
CGATGCAAGAATCAGTCGTC+AGG 0.443629 3_3:+69492847 Msa0467980:CDS
AGTAGTACTGCTGAAAGAAT+CGG 0.451994 3_3:-69491239 None:intergenic
AATACTTGAAGAGCTATTGC+AGG 0.455980 3_3:+69491297 Msa0467980:CDS
CATTTACAATGGTAGGGTTG+AGG 0.458343 3_3:+69489121 Msa0467980:CDS
AGTCGCATCGATCCCTTACC+GGG 0.459967 3_3:+69491265 Msa0467980:CDS
ATTTACAATGGTAGGGTTGA+GGG 0.460450 3_3:+69489122 Msa0467980:CDS
TTTACTCTCCTTGCTCGAGC+TGG 0.461579 3_3:+69493018 Msa0467980:CDS
AAAGGCAATACAACGAGTAT+TGG 0.467765 3_3:+69493336 Msa0467980:CDS
TCTGCAACCCTAGGTTCCTT+CGG 0.469011 3_3:+69488155 Msa0467980:CDS
TTTGATGCCTTCCTGGTCAA+GGG 0.470271 3_3:-69493314 None:intergenic
CGAAGAGCATCATGAGAGTC+GGG 0.473813 3_3:-69488404 None:intergenic
TATTCAAAACATATCAACAT+AGG 0.473981 3_3:+69490015 Msa0467980:CDS
ACGGGGCTCAGCTGTGGGAA+CGG 0.478203 3_3:-69489197 None:intergenic
GTCATCCCAGGCACCTCCCA+TGG 0.479573 3_3:+69492987 Msa0467980:intron
TCATGAGAGTCGGGAGCAGA+AGG 0.482800 3_3:-69488395 None:intergenic
TATTGTATCCAGCCCCGGTA+AGG 0.483813 3_3:-69491278 None:intergenic
AAATACCTTCACTGATAAGA+TGG 0.485562 3_3:-69489569 None:intergenic
GAGCAAGGAGAGTAAACCTT+TGG 0.486180 3_3:-69493011 None:intergenic
GAATGCACGGGGCTCAGCTG+TGG 0.486691 3_3:-69489203 None:intergenic
ATTCAAAACATATCAACATA+GGG 0.487004 3_3:+69490016 Msa0467980:CDS
GAAATTGGTCTTATCTGAAA+AGG 0.487701 3_3:+69489975 Msa0467980:CDS
GTAGTACTGCTGAAAGAATC+GGG 0.493011 3_3:-69491238 None:intergenic
AGTGTAATCAATCAGATTCA+AGG 0.500319 3_3:-69493367 None:intergenic
TTCTGAGATATGTATTAGTC+CGG 0.505166 3_3:-69490212 None:intergenic
TCATCACAATTATAAAATCA+TGG 0.507069 3_3:+69488307 Msa0467980:CDS
GAGAGTAAACCTTTGGTCCA+TGG 0.508023 3_3:-69493004 None:intergenic
TGAAGTAGAGATCATCAGAT+TGG 0.510817 3_3:+69489066 Msa0467980:intron
ATTGAAAGGATTGACGATTG+AGG 0.512516 3_3:-69488231 None:intergenic
AGAGTAAACCTTTGGTCCAT+GGG 0.520509 3_3:-69493003 None:intergenic
TTGTCCAGAGTTTCTAGCAG+TGG 0.520893 3_3:-69490788 None:intergenic
TTATAGTAGACGAGGAGAAA+CGG 0.524178 3_3:+69489953 Msa0467980:CDS
CCTTGCTCGAGCTGGAAGAC+AGG 0.524839 3_3:+69493026 Msa0467980:CDS
TGTTGATGGTGGAGAAGAAG+AGG 0.525498 3_3:-69488090 None:intergenic
CCAATTCGCGTTGTTGATGG+TGG 0.528486 3_3:-69488101 None:intergenic
TTGACGATTGAGGAAGAAGA+AGG 0.528513 3_3:-69488221 None:intergenic
AAGAGCTATTGCAGGAAGAT+GGG 0.530885 3_3:+69491305 Msa0467980:CDS
GTTCATCTGCGCTTCCCTGA+CGG 0.533095 3_3:+69490087 Msa0467980:CDS
AGATCCACTGCTAGAAACTC+TGG 0.537122 3_3:+69490784 Msa0467980:CDS
GTAAGAGACTTCTTAAGAGA+AGG 0.538732 3_3:+69490259 Msa0467980:CDS
GTGGACTCATTTACAATGGT+AGG 0.540686 3_3:+69489114 Msa0467980:CDS
GCTATCTTCTCTGCAACCCT+AGG 0.540971 3_3:+69488146 Msa0467980:CDS
TGAAGCGATAGATAGAATAG+AGG 0.550543 3_3:-69488023 None:intergenic
TGTTAGAATCTAAAGAGTGC+TGG 0.553772 3_3:-69493573 None:intergenic
ACGAAGAGCATCATGAGAGT+CGG 0.553818 3_3:-69488405 None:intergenic
AGCAAGAGTCGGTTCTGTTG+AGG 0.555824 3_3:+69490050 Msa0467980:CDS
ACATGGCACCGAAGGAACCT+AGG 0.560207 3_3:-69488163 None:intergenic
ATACCTTGACATGAATGCAC+GGG 0.560834 3_3:-69489215 None:intergenic
AATGCACGGGGCTCAGCTGT+GGG 0.560934 3_3:-69489202 None:intergenic
TACATATCTCAGAAGTGTCG+TGG 0.561533 3_3:+69490221 Msa0467980:CDS
TCTTGTGATTATTATTGAGA+GGG 0.562540 3_3:-69493391 None:intergenic
CAAGGTGGTGGTAACTTGCG+AGG 0.565879 3_3:-69488266 None:intergenic
TAAGAGAAGGTGAAGAAGTG+AGG 0.569636 3_3:+69490272 Msa0467980:CDS
AAGAGAAGGTGAAGAAGTGA+GGG 0.569971 3_3:+69490273 Msa0467980:CDS
TGGACTCATTTACAATGGTA+GGG 0.572453 3_3:+69489115 Msa0467980:CDS
GTAGAGATCATCAGATTGGA+AGG 0.573016 3_3:+69489070 Msa0467980:intron
AGATATGTATTAGTCCGGTA+AGG 0.575895 3_3:-69490207 None:intergenic
GGGCATTTAGGGAAATTGAA+AGG 0.576571 3_3:-69488245 None:intergenic
ATTGTATCCAGCCCCGGTAA+GGG 0.577307 3_3:-69491277 None:intergenic
ATCTTGTGATTATTATTGAG+AGG 0.577327 3_3:-69493392 None:intergenic
TAGAGTAAAACCGAACCAGC+AGG 0.577882 3_3:-69489160 None:intergenic
CCTGTCTTCCAGCTCGAGCA+AGG 0.580250 3_3:-69493026 None:intergenic
TAGTGCCACTGGCAAGGTGG+TGG 0.581006 3_3:-69488278 None:intergenic
CGGTTCCATCTTATCAGTGA+AGG 0.581265 3_3:+69489564 Msa0467980:CDS
TCAAGTATTGTATCCAGCCC+CGG 0.588559 3_3:-69491283 None:intergenic
AGGCACCTCCCATGGACCAA+AGG 0.593592 3_3:+69492995 Msa0467980:intron
TCTGGACAAAGTAATACCTC+AGG 0.594718 3_3:+69490802 Msa0467980:CDS
GAGGAAGGACATGGCACCGA+AGG 0.595181 3_3:-69488171 None:intergenic
TGATGCTCTTCGTCAAGCCA+GGG 0.599111 3_3:+69488415 Msa0467980:CDS
TGATTGTGAAGATGAGAGGA+AGG 0.601524 3_3:-69488186 None:intergenic
GTTGTGATTGTGAAGATGAG+AGG 0.605556 3_3:-69488190 None:intergenic
AGCCCCGTGCATTCATGTCA+AGG 0.606788 3_3:+69489212 Msa0467980:CDS
ACATATCTCAGAAGTGTCGT+GGG 0.608336 3_3:+69490222 Msa0467980:CDS
TCTGAAAACATCCCTTGACC+AGG 0.610102 3_3:+69493303 Msa0467980:CDS
CATGGCACCGAAGGAACCTA+GGG 0.612699 3_3:-69488162 None:intergenic
GATGCAAGAATCAGTCGTCA+GGG 0.617292 3_3:+69492848 Msa0467980:CDS
GAACTTGCAAGAGAGTTGAT+CGG 0.625345 3_3:+69489544 Msa0467980:CDS
TGACGATTGAGGAAGAAGAA+GGG 0.626651 3_3:-69488220 None:intergenic
TTGCATAGTAGTTACCGTCA+GGG 0.635380 3_3:-69490101 None:intergenic
GATACCTTGACATGAATGCA+CGG 0.637484 3_3:-69489216 None:intergenic
AAAACATCCCTTGACCAGGA+AGG 0.640351 3_3:+69493307 Msa0467980:CDS
CATGAGAGTCGGGAGCAGAA+GGG 0.642717 3_3:-69488394 None:intergenic
GATGATGACGATAGTGCCAC+TGG 0.643763 3_3:-69488289 None:intergenic
AAGGTGGTGGTAACTTGCGA+GGG 0.646784 3_3:-69488265 None:intergenic
GACAGTGGACTCATTTACAA+TGG 0.649720 3_3:+69489110 Msa0467980:CDS
AGCCATTTCGAGTTCAACAA+CGG 0.657550 3_3:-69488126 None:intergenic
TGAAGATGAGAGGAAGGACA+TGG 0.660623 3_3:-69488180 None:intergenic
TTCAAAACATATCAACATAG+GGG 0.663132 3_3:+69490017 Msa0467980:CDS
AGTTACCACCACCTTGCCAG+TGG 0.668620 3_3:+69488273 Msa0467980:CDS
TGACGATAGTGCCACTGGCA+AGG 0.670149 3_3:-69488284 None:intergenic
GTAAACCTTTGGTCCATGGG+AGG 0.670349 3_3:-69493000 None:intergenic
ATGCAAGAATCAGTCGTCAG+GGG 0.684889 3_3:+69492849 Msa0467980:CDS
CATATTGATGAATTCGACAG+TGG 0.686608 3_3:+69488359 Msa0467980:CDS
GCAAACGCATATAGAGACAG+TGG 0.691753 3_3:+69489095 Msa0467980:CDS
TTAGGTAATTATAGTAGACG+AGG 0.708605 3_3:+69489945 Msa0467980:intron
TACCTTGACATGAATGCACG+GGG 0.710872 3_3:-69489214 None:intergenic
GTCGCATCGATCCCTTACCG+GGG 0.720668 3_3:+69491266 Msa0467980:CDS
CGATAGTGCCACTGGCAAGG+TGG 0.751025 3_3:-69488281 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTTATTAAAAAAAAA+TGG + chr3_3:69492939-69492958 Msa0467980:intron 0.0%
!!! TTATTTTATCAAATTATTAG+CGG - chr3_3:69488769-69488788 None:intergenic 10.0%
!! TAATTACTATAAAAGAAATT+GGG - chr3_3:69490453-69490472 None:intergenic 10.0%
!! TTAATTACTATAAAAGAAAT+TGG - chr3_3:69490454-69490473 None:intergenic 10.0%
!!! TATAATTTATAAGCATATTT+TGG - chr3_3:69491041-69491060 None:intergenic 10.0%
!! TATGCTTATAAATTATAATT+AGG + chr3_3:69491044-69491063 Msa0467980:intron 10.0%
!! ATGCTTATAAATTATAATTA+GGG + chr3_3:69491045-69491064 Msa0467980:intron 10.0%
!! TAATATATTATTACAAAGAA+AGG + chr3_3:69491435-69491454 Msa0467980:intron 10.0%
!!! CAGCTTATATTTAAAATTTA+TGG + chr3_3:69488606-69488625 Msa0467980:intron 15.0%
!! TTCAATTTAATCATAATAGT+AGG + chr3_3:69489452-69489471 Msa0467980:intron 15.0%
!! TGTCTTAAATTTATAAATGA+CGG + chr3_3:69489907-69489926 Msa0467980:intron 15.0%
!!! ATAGTAATTAACTATGTTTT+TGG + chr3_3:69490463-69490482 Msa0467980:intron 15.0%
!! TGCATATATAAATACTAAAT+AGG - chr3_3:69491078-69491097 None:intergenic 15.0%
!! TGAAATCCATAATAATATAA+TGG + chr3_3:69492487-69492506 Msa0467980:intron 15.0%
!! TCATATATACATTATATTAG+GGG - chr3_3:69492797-69492816 None:intergenic 15.0%
!! GTCATATATACATTATATTA+GGG - chr3_3:69492798-69492817 None:intergenic 15.0%
!! TGTCATATATACATTATATT+AGG - chr3_3:69492799-69492818 None:intergenic 15.0%
!!! AATATATTTCTAATTTGTTG+AGG + chr3_3:69493234-69493253 Msa0467980:intron 15.0%
!! TAAAGTAAATTGTCAATAAA+CGG - chr3_3:69493529-69493548 None:intergenic 15.0%
!! TCATCACAATTATAAAATCA+TGG + chr3_3:69488307-69488326 Msa0467980:CDS 20.0%
!! AAGTAAGTTTCTTTGTATTT+AGG + chr3_3:69488529-69488548 Msa0467980:intron 20.0%
!! AGTAAGTTTCTTTGTATTTA+GGG + chr3_3:69488530-69488549 Msa0467980:intron 20.0%
!!! TAGGTTTTTATATTAGATGT+AGG - chr3_3:69488649-69488668 None:intergenic 20.0%
!! AGTGTAGTGAAATTAATATT+AGG - chr3_3:69488668-69488687 None:intergenic 20.0%
!! AAAACTAATGTATATTCTTG+CGG + chr3_3:69489712-69489731 Msa0467980:intron 20.0%
!! TATTCAAAACATATCAACAT+AGG + chr3_3:69490015-69490034 Msa0467980:CDS 20.0%
!! ATTCAAAACATATCAACATA+GGG + chr3_3:69490016-69490035 Msa0467980:CDS 20.0%
!! TAATAGACTATTACTTTAGA+AGG - chr3_3:69490342-69490361 None:intergenic 20.0%
!! TTTCTATTATAAATGTTTGC+TGG + chr3_3:69490387-69490406 Msa0467980:intron 20.0%
!!! AACTTTTCTTTACAATAATG+AGG + chr3_3:69490589-69490608 Msa0467980:intron 20.0%
!! AGTAATTATCATACACAAAA+GGG - chr3_3:69490866-69490885 None:intergenic 20.0%
!! TAGTAATTATCATACACAAA+AGG - chr3_3:69490867-69490886 None:intergenic 20.0%
!! TTAAATACATTTATACACCA+AGG - chr3_3:69490896-69490915 None:intergenic 20.0%
!! TATTTATATATGCATGAATG+TGG + chr3_3:69491084-69491103 Msa0467980:intron 20.0%
!! ATTTATATATGCATGAATGT+GGG + chr3_3:69491085-69491104 Msa0467980:intron 20.0%
!! AAATTAGGTATATGTATCAA+AGG + chr3_3:69491666-69491685 Msa0467980:intron 20.0%
!! AGATAGAACTAGAATTAAAA+GGG + chr3_3:69491837-69491856 Msa0467980:intron 20.0%
!! TTTAGAGATGATTTATGATA+AGG + chr3_3:69491865-69491884 Msa0467980:intron 20.0%
!! AATCCATAATAATATAATGG+AGG + chr3_3:69492490-69492509 Msa0467980:intron 20.0%
!! ATTCCTCCATTATATTATTA+TGG - chr3_3:69492496-69492515 None:intergenic 20.0%
!!! TTTTGATATCTGAATCTTTT+TGG + chr3_3:69492965-69492984 Msa0467980:intron 20.0%
!!! AATTGGTTTGGATTGAATTT+TGG - chr3_3:69488058-69488077 None:intergenic 25.0%
! TTTCTTAATCCTATCAACTT+AGG + chr3_3:69488469-69488488 Msa0467980:intron 25.0%
!!! TAATATTCTCCTAAGTTGAT+AGG - chr3_3:69488481-69488500 None:intergenic 25.0%
! AGATGTAGGTTATATAGTTT+AGG - chr3_3:69488635-69488654 None:intergenic 25.0%
! TTACAATAAACTACCAATGT+CGG - chr3_3:69488926-69488945 None:intergenic 25.0%
!!! TCCTTACAATTCTAAAATCA+TGG + chr3_3:69489267-69489286 Msa0467980:intron 25.0%
!!! ACCATGATTTTAGAATTGTA+AGG - chr3_3:69489271-69489290 None:intergenic 25.0%
! CACACAATTAAATGACTAAA+TGG - chr3_3:69489411-69489430 None:intergenic 25.0%
! CATTTAGTCATTTAATTGTG+TGG + chr3_3:69489409-69489428 Msa0467980:intron 25.0%
!! GAAAAAAAAAGGTATATGGT+AGG - chr3_3:69489605-69489624 None:intergenic 25.0%
!! ACAGGAAAAAAAAAGGTATA+TGG - chr3_3:69489609-69489628 None:intergenic 25.0%
! TTGAAATGACTCAAATCATA+TGG - chr3_3:69489746-69489765 None:intergenic 25.0%
! TAAGAGTTTGATAGATTTCA+AGG - chr3_3:69489781-69489800 None:intergenic 25.0%
! TTCAAAACATATCAACATAG+GGG + chr3_3:69490017-69490036 Msa0467980:CDS 25.0%
! ATGCAAACTTTGTATGTTTA+TGG + chr3_3:69490118-69490137 Msa0467980:intron 25.0%
! TTTCCATGATAAAGTGAAAA+AGG - chr3_3:69490147-69490166 None:intergenic 25.0%
!! ACTTTAGAAGGCATAAATAT+TGG - chr3_3:69490330-69490349 None:intergenic 25.0%
!! TTTTACACTGCAAGATTAAA+TGG - chr3_3:69490729-69490748 None:intergenic 25.0%
!! ATTTAGTTTATACAAACCTG+AGG - chr3_3:69490821-69490840 None:intergenic 25.0%
! GATAATTACTATGTTATCCT+TGG + chr3_3:69490876-69490895 Msa0467980:intron 25.0%
! TAAATACTTCAAACAGTGAT+AGG - chr3_3:69491337-69491356 None:intergenic 25.0%
!! GTTTGAAGTATTTAACTACT+TGG + chr3_3:69491343-69491362 Msa0467980:intron 25.0%
! AAGAAATATTGAAACCGTAT+GGG - chr3_3:69491403-69491422 None:intergenic 25.0%
! AAAGAAATATTGAAACCGTA+TGG - chr3_3:69491404-69491423 None:intergenic 25.0%
! ATAGATAGTAATAATGCCTA+AGG + chr3_3:69491458-69491477 Msa0467980:intron 25.0%
! GCATACAAGATAATGAAATT+AGG + chr3_3:69491651-69491670 Msa0467980:intron 25.0%
! ATATGTATCAAAGGAAAATC+AGG + chr3_3:69491675-69491694 Msa0467980:intron 25.0%
! TATGTATCAAAGGAAAATCA+GGG + chr3_3:69491676-69491695 Msa0467980:intron 25.0%
! AGGACTAAATTATGAAAAGA+TGG + chr3_3:69491700-69491719 Msa0467980:intron 25.0%
! ACTAAATTATGAAAAGATGG+TGG + chr3_3:69491703-69491722 Msa0467980:intron 25.0%
! GAGATAGAACTAGAATTAAA+AGG + chr3_3:69491836-69491855 Msa0467980:intron 25.0%
! GATAGAACTAGAATTAAAAG+GGG + chr3_3:69491838-69491857 Msa0467980:intron 25.0%
! TCTCATTTACAATTATAGCA+TGG - chr3_3:69492070-69492089 None:intergenic 25.0%
! CAACAAAACTACATATTGTT+GGG - chr3_3:69492170-69492189 None:intergenic 25.0%
! TCAACAAAACTACATATTGT+TGG - chr3_3:69492171-69492190 None:intergenic 25.0%
!!! TCACTAGTTTTGTAAGTAAA+AGG - chr3_3:69492237-69492256 None:intergenic 25.0%
! TGTAATAAGGAAAACAAAGA+AGG - chr3_3:69492318-69492337 None:intergenic 25.0%
! CAAGAATAACAAAATTTCTG+TGG - chr3_3:69492414-69492433 None:intergenic 25.0%
! TCTCTTTATAAACACAACTA+GGG - chr3_3:69493176-69493195 None:intergenic 25.0%
! ATCTCTTTATAAACACAACT+AGG - chr3_3:69493177-69493196 None:intergenic 25.0%
! TCTTGTGATTATTATTGAGA+GGG - chr3_3:69493394-69493413 None:intergenic 25.0%
! ATCTTGTGATTATTATTGAG+AGG - chr3_3:69493395-69493414 None:intergenic 25.0%
! CAGCTTTCACATTTATTTAA+AGG + chr3_3:69493421-69493440 Msa0467980:three_prime_UTR 25.0%
! TAGTTAAATGAATCACGATT+TGG - chr3_3:69493477-69493496 None:intergenic 25.0%
TTATGTGTTGTATTTGCCAA+CGG + chr3_3:69488694-69488713 Msa0467980:intron 30.0%
TATCAAATTATTAGCGGTGT+CGG - chr3_3:69488763-69488782 None:intergenic 30.0%
TGTAATAATATGTGTCGTCT+CGG + chr3_3:69488799-69488818 Msa0467980:intron 30.0%
!!! TGAACTTTTTGGTTCTTGTT+TGG + chr3_3:69488896-69488915 Msa0467980:intron 30.0%
! TAGAACACAACACATTTTAG+AGG - chr3_3:69489029-69489048 None:intergenic 30.0%
AATTTGCAATAAGTCAGTAG+TGG - chr3_3:69489486-69489505 None:intergenic 30.0%
!!! AGTTCTTGGATAGTTTTATC+TGG - chr3_3:69489529-69489548 None:intergenic 30.0%
AAATACCTTCACTGATAAGA+TGG - chr3_3:69489572-69489591 None:intergenic 30.0%
TGGATTCACAGGAAAAAAAA+AGG - chr3_3:69489616-69489635 None:intergenic 30.0%
ACCTAATTCAGCATAAACAA+CGG - chr3_3:69489847-69489866 None:intergenic 30.0%
TTAGGTAATTATAGTAGACG+AGG + chr3_3:69489945-69489964 Msa0467980:intron 30.0%
!! GAAATTGGTCTTATCTGAAA+AGG + chr3_3:69489975-69489994 Msa0467980:CDS 30.0%
!! CATCCTTTTTCACTTTATCA+TGG + chr3_3:69490141-69490160 Msa0467980:intron 30.0%
!! TTCTGAGATATGTATTAGTC+CGG - chr3_3:69490215-69490234 None:intergenic 30.0%
!! GTTTTAGTATCATTGCTTGT+TGG + chr3_3:69490424-69490443 Msa0467980:intron 30.0%
AAAATCCATTCACATGTCTT+GGG - chr3_3:69490677-69490696 None:intergenic 30.0%
TAAAATCCATTCACATGTCT+TGG - chr3_3:69490678-69490697 None:intergenic 30.0%
AAAAAAGTCAACATGCATGT+TGG - chr3_3:69490704-69490723 None:intergenic 30.0%
AATCTTGCAGTGTAAAAATG+AGG + chr3_3:69490732-69490751 Msa0467980:intron 30.0%
ATTATCATACACAAAAGGGA+CGG - chr3_3:69490862-69490881 None:intergenic 30.0%
ACACCTACTAATTTGAAAGA+GGG + chr3_3:69490989-69491008 Msa0467980:intron 30.0%
! ATGGATGTATCTCTGATTTT+GGG - chr3_3:69491373-69491392 None:intergenic 30.0%
AGAAATATTGAAACCGTATG+GGG - chr3_3:69491402-69491421 None:intergenic 30.0%
!! TTTACATTTTTGAGCCACTT+TGG - chr3_3:69491522-69491541 None:intergenic 30.0%
!!! GGTGTGGTTTCTTTTTTATT+AGG - chr3_3:69491578-69491597 None:intergenic 30.0%
! ATGTCTTGTGAAAGTGTAAT+GGG - chr3_3:69491605-69491624 None:intergenic 30.0%
ATGTATCAAAGGAAAATCAG+GGG + chr3_3:69491677-69491696 Msa0467980:intron 30.0%
ATCAGTAAGTCAGAGTTAAA+AGG + chr3_3:69491783-69491802 Msa0467980:intron 30.0%
!! TCATTTGATTACCGTTTTTC+TGG + chr3_3:69491900-69491919 Msa0467980:intron 30.0%
TACATAACTCTTGTTACTGT+TGG + chr3_3:69491939-69491958 Msa0467980:intron 30.0%
TAACTCATCATTACACTCAT+TGG + chr3_3:69492101-69492120 Msa0467980:intron 30.0%
AATAAGGAAAACAAAGAAGG+TGG - chr3_3:69492315-69492334 None:intergenic 30.0%
TCAACTCGTACATTGTAATA+AGG - chr3_3:69492331-69492350 None:intergenic 30.0%
TTTGCAATTTATCTGCATTC+AGG + chr3_3:69492724-69492743 Msa0467980:intron 30.0%
TTGCAATTTATCTGCATTCA+GGG + chr3_3:69492725-69492744 Msa0467980:intron 30.0%
AGTGTAATCAATCAGATTCA+AGG - chr3_3:69493370-69493389 None:intergenic 30.0%
CATTTAACTAACTCGCAAAA+AGG + chr3_3:69493487-69493506 Msa0467980:three_prime_UTR 30.0%
TGAAGCGATAGATAGAATAG+AGG - chr3_3:69488026-69488045 None:intergenic 35.0%
AAGAGGAAGATGAATTGGTT+TGG - chr3_3:69488070-69488089 None:intergenic 35.0%
ATTGAAAGGATTGACGATTG+AGG - chr3_3:69488234-69488253 None:intergenic 35.0%
CATATTGATGAATTCGACAG+TGG + chr3_3:69488359-69488378 Msa0467980:CDS 35.0%
AATTGAAGAAATACAGACCC+TGG - chr3_3:69488435-69488454 None:intergenic 35.0%
GGATTAAGCAACACAAAATG+TGG + chr3_3:69488551-69488570 Msa0467980:intron 35.0%
TATGTGTTGTATTTGCCAAC+GGG + chr3_3:69488695-69488714 Msa0467980:intron 35.0%
! GCACAAATGGTTGAACTTTT+TGG + chr3_3:69488885-69488904 Msa0467980:intron 35.0%
TGAAGTAGAGATCATCAGAT+TGG + chr3_3:69489066-69489085 Msa0467980:intron 35.0%
TGGACTCATTTACAATGGTA+GGG + chr3_3:69489115-69489134 Msa0467980:CDS 35.0%
ATTTACAATGGTAGGGTTGA+GGG + chr3_3:69489122-69489141 Msa0467980:CDS 35.0%
! GTTCGGTTTTACTCTATCAT+GGG + chr3_3:69489167-69489186 Msa0467980:CDS 35.0%
CACTACTACTACTACTACTA+TGG - chr3_3:69489245-69489264 None:intergenic 35.0%
ACTACTACTACTAGATACCA+TGG - chr3_3:69488327-69488346 None:intergenic 35.0%
TGAGGATGAATTGTGATGTA+AGG - chr3_3:69489379-69489398 None:intergenic 35.0%
!! TATCTGGTTCTGAACAGAAA+AGG - chr3_3:69489513-69489532 None:intergenic 35.0%
AAATAGAGAAGCCGCAAATA+GGG - chr3_3:69489640-69489659 None:intergenic 35.0%
TAAATAGAGAAGCCGCAAAT+AGG - chr3_3:69489641-69489660 None:intergenic 35.0%
TTATGGTACCAAAATGATGC+AGG - chr3_3:69489823-69489842 None:intergenic 35.0%
!! TCAGCATAAACAACGGATTA+TGG - chr3_3:69489840-69489859 None:intergenic 35.0%
TCCGTTGTTTATGCTGAATT+AGG + chr3_3:69489843-69489862 Msa0467980:intron 35.0%
! ATATTTTCAACCTGCATGCT+TGG + chr3_3:69489871-69489890 Msa0467980:intron 35.0%
! ATTTGTTAAACCAAGCATGC+AGG - chr3_3:69489884-69489903 None:intergenic 35.0%
TGCATGCTTGGTTTAACAAA+TGG + chr3_3:69489883-69489902 Msa0467980:intron 35.0%
TTATAGTAGACGAGGAGAAA+CGG + chr3_3:69489953-69489972 Msa0467980:CDS 35.0%
TATCTGAAAAGGAAGCTTCA+TGG + chr3_3:69489986-69490005 Msa0467980:CDS 35.0%
AGATATGTATTAGTCCGGTA+AGG - chr3_3:69490210-69490229 None:intergenic 35.0%
GTAAGAGACTTCTTAAGAGA+AGG + chr3_3:69490259-69490278 Msa0467980:CDS 35.0%
CACACCTACTAATTTGAAAG+AGG + chr3_3:69490988-69491007 Msa0467980:intron 35.0%
AAGCCCTCTTTCAAATTAGT+AGG - chr3_3:69490995-69491014 None:intergenic 35.0%
TTGAAAGAGGGCTTGTATTT+AGG + chr3_3:69491001-69491020 Msa0467980:intron 35.0%
TGAAAGAGGGCTTGTATTTA+GGG + chr3_3:69491002-69491021 Msa0467980:intron 35.0%
AGTAGTACTGCTGAAAGAAT+CGG - chr3_3:69491242-69491261 None:intergenic 35.0%
AATACTTGAAGAGCTATTGC+AGG + chr3_3:69491297-69491316 Msa0467980:CDS 35.0%
! GATGGATGTATCTCTGATTT+TGG - chr3_3:69491374-69491393 None:intergenic 35.0%
TTGGATGGTTTCTTATCCTT+AGG - chr3_3:69491477-69491496 None:intergenic 35.0%
!! TTTCGTTTTTCTGCATTGGA+TGG - chr3_3:69491492-69491511 None:intergenic 35.0%
CAAAAATGTAAACAGCTGCT+TGG + chr3_3:69491530-69491549 Msa0467980:intron 35.0%
! TGTGAAAGTGTAATGGGATA+AGG - chr3_3:69491599-69491618 None:intergenic 35.0%
! GATGTCTTGTGAAAGTGTAA+TGG - chr3_3:69491606-69491625 None:intergenic 35.0%
!! ATGAAAAGATGGTGGAATCT+CGG + chr3_3:69491711-69491730 Msa0467980:intron 35.0%
TACTGATCTGTTCTCTTTAC+TGG - chr3_3:69491770-69491789 None:intergenic 35.0%
TCAAGCAGTTTCCAGAAAAA+CGG - chr3_3:69491914-69491933 None:intergenic 35.0%
!! TGTTGATAATTGCTGCTCTT+TGG + chr3_3:69492185-69492204 Msa0467980:intron 35.0%
AAGAAGGTGGAACTATGTTA+TGG - chr3_3:69492302-69492321 None:intergenic 35.0%
GACTACTCATTTCCTATTCA+GGG - chr3_3:69492532-69492551 None:intergenic 35.0%
TGACTACTCATTTCCTATTC+AGG - chr3_3:69492533-69492552 None:intergenic 35.0%
TTGCAATTTCTCTGCATTCA+AGG - chr3_3:69492563-69492582 None:intergenic 35.0%
ACCAACAAAGTCTACATTCA+GGG - chr3_3:69492592-69492611 None:intergenic 35.0%
AGACTTTGTTGGTCAATTTC+AGG + chr3_3:69492599-69492618 Msa0467980:intron 35.0%
GACTTTGTTGGTCAATTTCA+GGG + chr3_3:69492600-69492619 Msa0467980:intron 35.0%
TCAGGGACTAAATTGACTAA+AGG + chr3_3:69492649-69492668 Msa0467980:intron 35.0%
ACTAAAAGAGTCTGCATTCA+GGG + chr3_3:69492696-69492715 Msa0467980:intron 35.0%
ATTTAGTCCCTGAATAGGAA+TGG - chr3_3:69492766-69492785 None:intergenic 35.0%
TAGTCATTTAGTCCCTGAAT+AGG - chr3_3:69492771-69492790 None:intergenic 35.0%
! ATCCACTTCATGATGATGTT+GGG + chr3_3:69493148-69493167 Msa0467980:intron 35.0%
AAAGGCAATACAACGAGTAT+TGG + chr3_3:69493336-69493355 Msa0467980:CDS 35.0%
! TGTTAGAATCTAAAGAGTGC+TGG - chr3_3:69493576-69493595 None:intergenic 35.0%
AGAGGAAGAGGAAGATGAAT+TGG - chr3_3:69488075-69488094 None:intergenic 40.0%
TTCCGTTGTTGAACTCGAAA+TGG + chr3_3:69488124-69488143 Msa0467980:exon 40.0%
!! AGCCATTTCGAGTTCAACAA+CGG - chr3_3:69488129-69488148 None:intergenic 40.0%
TGATTGTGAAGATGAGAGGA+AGG - chr3_3:69488189-69488208 None:intergenic 40.0%
GTTGTGATTGTGAAGATGAG+AGG - chr3_3:69488193-69488212 None:intergenic 40.0%
TGACGATTGAGGAAGAAGAA+GGG - chr3_3:69488223-69488242 None:intergenic 40.0%
TTGACGATTGAGGAAGAAGA+AGG - chr3_3:69488224-69488243 None:intergenic 40.0%
GGGCATTTAGGGAAATTGAA+AGG - chr3_3:69488248-69488267 None:intergenic 40.0%
ATGTGTTGTATTTGCCAACG+GGG + chr3_3:69488696-69488715 Msa0467980:intron 40.0%
ACATTGCCTGTGATTCTCTT+TGG + chr3_3:69488956-69488975 Msa0467980:intron 40.0%
GTAGAGATCATCAGATTGGA+AGG + chr3_3:69489070-69489089 Msa0467980:intron 40.0%
! GACAGTGGACTCATTTACAA+TGG + chr3_3:69489110-69489129 Msa0467980:CDS 40.0%
GTGGACTCATTTACAATGGT+AGG + chr3_3:69489114-69489133 Msa0467980:CDS 40.0%
CATTTACAATGGTAGGGTTG+AGG + chr3_3:69489121-69489140 Msa0467980:CDS 40.0%
!! GGTTCGGTTTTACTCTATCA+TGG + chr3_3:69489166-69489185 Msa0467980:CDS 40.0%
ATACCTTGACATGAATGCAC+GGG - chr3_3:69489218-69489237 None:intergenic 40.0%
GATACCTTGACATGAATGCA+CGG - chr3_3:69489219-69489238 None:intergenic 40.0%
TCCTTAATGCTTTGACACCA+TGG + chr3_3:69489325-69489344 Msa0467980:intron 40.0%
! ACCATGGTGTCAAAGCATTA+AGG - chr3_3:69489329-69489348 None:intergenic 40.0%
!! ACTAAATGGCATCGATAGTG+AGG - chr3_3:69489397-69489416 None:intergenic 40.0%
TCAACTCTCTTGCAAGTTCT+TGG - chr3_3:69489543-69489562 None:intergenic 40.0%
! GAACTTGCAAGAGAGTTGAT+CGG + chr3_3:69489544-69489563 Msa0467980:CDS 40.0%
TGTGAATCCAACCCTATTTG+CGG + chr3_3:69489626-69489645 Msa0467980:intron 40.0%
TATTAGTCCAGCTGAAGCTT+CGG + chr3_3:69489659-69489678 Msa0467980:intron 40.0%
! TAGTGCTTCCTGCATCATTT+TGG + chr3_3:69489812-69489831 Msa0467980:intron 40.0%
!!! CGGCACTTTCTTTTGACTTT+AGG + chr3_3:69489927-69489946 Msa0467980:intron 40.0%
!!! GACCTTTTTGAAGCAAGAGT+CGG + chr3_3:69490039-69490058 Msa0467980:CDS 40.0%
! AACCGACTCTTGCTTCAAAA+AGG - chr3_3:69490044-69490063 None:intergenic 40.0%
TTGCATAGTAGTTACCGTCA+GGG - chr3_3:69490104-69490123 None:intergenic 40.0%
TTTGCATAGTAGTTACCGTC+AGG - chr3_3:69490105-69490124 None:intergenic 40.0%
!! TACATATCTCAGAAGTGTCG+TGG + chr3_3:69490221-69490240 Msa0467980:CDS 40.0%
!! ACATATCTCAGAAGTGTCGT+GGG + chr3_3:69490222-69490241 Msa0467980:CDS 40.0%
TAAGAGAAGGTGAAGAAGTG+AGG + chr3_3:69490272-69490291 Msa0467980:CDS 40.0%
AAGAGAAGGTGAAGAAGTGA+GGG + chr3_3:69490273-69490292 Msa0467980:CDS 40.0%
! TTCTGTCTTGAACCGACTTT+CGG + chr3_3:69490513-69490532 Msa0467980:intron 40.0%
ACAGCTTAGAAACCGAAAGT+CGG - chr3_3:69490528-69490547 None:intergenic 40.0%
TCTTGGGAGAGTTTATGACA+TGG - chr3_3:69490661-69490680 None:intergenic 40.0%
TCTGGACAAAGTAATACCTC+AGG + chr3_3:69490802-69490821 Msa0467980:CDS 40.0%
TACACGTCTGTGTGAATATG+TGG + chr3_3:69491116-69491135 Msa0467980:intron 40.0%
ACACGTCTGTGTGAATATGT+GGG + chr3_3:69491117-69491136 Msa0467980:intron 40.0%
TCACGCTCATACACACATTT+AGG - chr3_3:69491153-69491172 None:intergenic 40.0%
! AACTCCGAGTTTCATTTTGC+AGG + chr3_3:69491201-69491220 Msa0467980:intron 40.0%
CCATCCTGCAAAATGAAACT+CGG - chr3_3:69491208-69491227 None:intergenic 40.0%
GTAGTACTGCTGAAAGAATC+GGG - chr3_3:69491241-69491260 None:intergenic 40.0%
AAGAGCTATTGCAGGAAGAT+GGG + chr3_3:69491305-69491324 Msa0467980:CDS 40.0%
!! CTGCTTTCGTTTTTCTGCAT+TGG - chr3_3:69491496-69491515 None:intergenic 40.0%
! AAGTGTAATGGGATAAGGTG+TGG - chr3_3:69491594-69491613 None:intergenic 40.0%
TATCAAAGGAAAATCAGGGG+AGG + chr3_3:69491680-69491699 Msa0467980:intron 40.0%
TCTCGTTATCCTACAAGCTA+AGG + chr3_3:69491968-69491987 Msa0467980:intron 40.0%
TATCCTACAAGCTAAGGAGA+TGG + chr3_3:69491974-69491993 Msa0467980:intron 40.0%
GTTGGGTGATTCAGACAATT+CGG - chr3_3:69492153-69492172 None:intergenic 40.0%
GTAAGTAAAAGGATCAGAGC+AGG - chr3_3:69492226-69492245 None:intergenic 40.0%
AAGGTGGAACTATGTTATGG+TGG - chr3_3:69492299-69492318 None:intergenic 40.0%
! AGTCACTTTAGTCCCTGAAT+AGG + chr3_3:69492517-69492536 Msa0467980:intron 40.0%
TCCCTGAATGTAGACTTTGT+TGG + chr3_3:69492588-69492607 Msa0467980:intron 40.0%
GACCAACAAAGTCTACATTC+AGG - chr3_3:69492593-69492612 None:intergenic 40.0%
TCAGGGACTAAAGTGACTAA+CGG + chr3_3:69492617-69492636 Msa0467980:intron 40.0%
ACTAACGGAGTCTACATTCA+GGG + chr3_3:69492632-69492651 Msa0467980:intron 40.0%
! ACTAAAGGAGTGTGCATTCA+TGG + chr3_3:69492664-69492683 Msa0467980:intron 40.0%
GACTAAAAGAGTCTGCATTC+AGG + chr3_3:69492695-69492714 Msa0467980:intron 40.0%
AGAGTAAACCTTTGGTCCAT+GGG - chr3_3:69493006-69493025 None:intergenic 40.0%
! CATCCACTTCATGATGATGT+TGG + chr3_3:69493147-69493166 Msa0467980:intron 40.0%
! TCCACTTCATGATGATGTTG+GGG + chr3_3:69493149-69493168 Msa0467980:intron 40.0%
!! TGTTGATGGTGGAGAAGAAG+AGG - chr3_3:69488093-69488112 None:intergenic 45.0%
GAACCAATTCGCGTTGTTGA+TGG - chr3_3:69488107-69488126 None:intergenic 45.0%
TGAAGATGAGAGGAAGGACA+TGG - chr3_3:69488183-69488202 None:intergenic 45.0%
!! GTAACTTGCGAGGGCATTTA+GGG - chr3_3:69488259-69488278 None:intergenic 45.0%
!! ACGAAGAGCATCATGAGAGT+CGG - chr3_3:69488408-69488427 None:intergenic 45.0%
TGTGTTGTATTTGCCAACGG+GGG + chr3_3:69488697-69488716 Msa0467980:intron 45.0%
TTGTCGTGTCCGTACTTCAT+AGG - chr3_3:69488729-69488748 None:intergenic 45.0%
TATGAAGCACGGACACTACT+CGG - chr3_3:69488860-69488879 None:intergenic 45.0%
TTGTGCCAACCTATGAAGCA+CGG - chr3_3:69488871-69488890 None:intergenic 45.0%
! GCTTCATAGGTTGGCACAAA+TGG + chr3_3:69488872-69488891 Msa0467980:intron 45.0%
! CTTGTTTGGAACTCCGACAT+TGG + chr3_3:69488910-69488929 Msa0467980:intron 45.0%
AATCACAGGCAATGTCAGCA+AGG - chr3_3:69488951-69488970 None:intergenic 45.0%
GCAAGACCAAAGAGAATCAC+AGG - chr3_3:69488965-69488984 None:intergenic 45.0%
GCAAACGCATATAGAGACAG+TGG + chr3_3:69489095-69489114 Msa0467980:CDS 45.0%
!! AGGGTTGAGGGTTTTAATGC+TGG + chr3_3:69489134-69489153 Msa0467980:CDS 45.0%
!! GTTGAGGGTTTTAATGCTGG+AGG + chr3_3:69489137-69489156 Msa0467980:CDS 45.0%
TAGAGTAAAACCGAACCAGC+AGG - chr3_3:69489163-69489182 None:intergenic 45.0%
TACCTTGACATGAATGCACG+GGG - chr3_3:69489217-69489236 None:intergenic 45.0%
CGGTTCCATCTTATCAGTGA+AGG + chr3_3:69489564-69489583 Msa0467980:CDS 45.0%
GCAAATAGGGTTGGATTCAC+AGG - chr3_3:69489627-69489646 None:intergenic 45.0%
! TTTTATGCCGAAGCTTCAGC+TGG - chr3_3:69489669-69489688 None:intergenic 45.0%
AGACGAGGAGAAACGGAAAT+TGG + chr3_3:69489960-69489979 Msa0467980:CDS 45.0%
GCAGGTCTTTATCACCTTAC+CGG + chr3_3:69490193-69490212 Msa0467980:intron 45.0%
ACTCTCCCAAGACATGTGAA+TGG + chr3_3:69490669-69490688 Msa0467980:intron 45.0%
AGATCCACTGCTAGAAACTC+TGG + chr3_3:69490784-69490803 Msa0467980:CDS 45.0%
!! TTGTCCAGAGTTTCTAGCAG+TGG - chr3_3:69490791-69490810 None:intergenic 45.0%
TCATACACAAAAGGGACGGA+GGG - chr3_3:69490858-69490877 None:intergenic 45.0%
ATCATACACAAAAGGGACGG+AGG - chr3_3:69490859-69490878 None:intergenic 45.0%
CACGTCTGTGTGAATATGTG+GGG + chr3_3:69491118-69491137 Msa0467980:intron 45.0%
! CCGAGTTTCATTTTGCAGGA+TGG + chr3_3:69491205-69491224 Msa0467980:intron 45.0%
! TCAAGTATTGTATCCAGCCC+CGG - chr3_3:69491286-69491305 None:intergenic 45.0%
GAAGAGCTATTGCAGGAAGA+TGG + chr3_3:69491304-69491323 Msa0467980:CDS 45.0%
ATTGAAACCGTATGGGGCAA+GGG - chr3_3:69491396-69491415 None:intergenic 45.0%
TATTGAAACCGTATGGGGCA+AGG - chr3_3:69491397-69491416 None:intergenic 45.0%
AACGAAAGCAGATGCCAAAG+TGG + chr3_3:69491505-69491524 Msa0467980:intron 45.0%
!! GATGGTGGAATCTCGGTATT+AGG + chr3_3:69491718-69491737 Msa0467980:intron 45.0%
!! CAACCATCTCCTTAGCTTGT+AGG - chr3_3:69491980-69491999 None:intergenic 45.0%
CAGACAATTCGGATGTAGAC+TGG - chr3_3:69492142-69492161 None:intergenic 45.0%
AAAGGATCAGAGCAGGTCTT+AGG - chr3_3:69492219-69492238 None:intergenic 45.0%
GACTAACGGAGTCTACATTC+AGG + chr3_3:69492631-69492650 Msa0467980:intron 45.0%
TGACGACTCCATTCCTATTC+AGG + chr3_3:69492755-69492774 Msa0467980:intron 45.0%
GACGACTCCATTCCTATTCA+GGG + chr3_3:69492756-69492775 Msa0467980:intron 45.0%
GATGCAAGAATCAGTCGTCA+GGG + chr3_3:69492848-69492867 Msa0467980:CDS 45.0%
ATGCAAGAATCAGTCGTCAG+GGG + chr3_3:69492849-69492868 Msa0467980:CDS 45.0%
TCAGGGGTTTGAAAAACGAG+TGG + chr3_3:69492865-69492884 Msa0467980:CDS 45.0%
TCTCACAAGACTTGCAGCTT+TGG + chr3_3:69492888-69492907 Msa0467980:CDS 45.0%
GAGAGTAAACCTTTGGTCCA+TGG - chr3_3:69493007-69493026 None:intergenic 45.0%
GAGCAAGGAGAGTAAACCTT+TGG - chr3_3:69493014-69493033 None:intergenic 45.0%
ACCCCAACATCATCATGAAG+TGG - chr3_3:69493153-69493172 None:intergenic 45.0%
ATGTATCTCCTGAACCTGGA+TGG - chr3_3:69493284-69493303 None:intergenic 45.0%
TCAGATGTATCTCCTGAACC+TGG - chr3_3:69493288-69493307 None:intergenic 45.0%
TCTGAAAACATCCCTTGACC+AGG + chr3_3:69493303-69493322 Msa0467980:CDS 45.0%
AAAACATCCCTTGACCAGGA+AGG + chr3_3:69493307-69493326 Msa0467980:CDS 45.0%
TTTGATGCCTTCCTGGTCAA+GGG - chr3_3:69493317-69493336 None:intergenic 45.0%
! TTTTGATGCCTTCCTGGTCA+AGG - chr3_3:69493318-69493337 None:intergenic 45.0%
!! TGACCAGGAAGGCATCAAAA+AGG + chr3_3:69493318-69493337 Msa0467980:CDS 45.0%
! TTGCCTTTTTGATGCCTTCC+TGG - chr3_3:69493324-69493343 None:intergenic 45.0%
TGGTGGAGAAGAAGAGGAAG+AGG - chr3_3:69488087-69488106 None:intergenic 50.0%
! CCAATTCGCGTTGTTGATGG+TGG - chr3_3:69488104-69488123 None:intergenic 50.0%
CCACCATCAACAACGCGAAT+TGG + chr3_3:69488101-69488120 Msa0467980:five_prime_UTR 50.0%
GCTATCTTCTCTGCAACCCT+AGG + chr3_3:69488146-69488165 Msa0467980:CDS 50.0%
TCTGCAACCCTAGGTTCCTT+CGG + chr3_3:69488155-69488174 Msa0467980:CDS 50.0%
!! GGTAACTTGCGAGGGCATTT+AGG - chr3_3:69488260-69488279 None:intergenic 50.0%
! AAGGTGGTGGTAACTTGCGA+GGG - chr3_3:69488268-69488287 None:intergenic 50.0%
! GATGATGACGATAGTGCCAC+TGG - chr3_3:69488292-69488311 None:intergenic 50.0%
!! CGAAGAGCATCATGAGAGTC+GGG - chr3_3:69488407-69488426 None:intergenic 50.0%
ATGATGCTCTTCGTCAAGCC+AGG + chr3_3:69488414-69488433 Msa0467980:CDS 50.0%
TGATGCTCTTCGTCAAGCCA+GGG + chr3_3:69488415-69488434 Msa0467980:CDS 50.0%
TTGTATTTGCCAACGGGGGT+TGG + chr3_3:69488701-69488720 Msa0467980:intron 50.0%
! GGGTTGGCACCTATGAAGTA+CGG + chr3_3:69488717-69488736 Msa0467980:intron 50.0%
! TACTCGGATTAGGCGTATCC+CGG - chr3_3:69488844-69488863 None:intergenic 50.0%
GAGTAGTGTCCGTGCTTCAT+AGG + chr3_3:69488859-69488878 Msa0467980:intron 50.0%
AGTGTCCGTGCTTCATAGGT+TGG + chr3_3:69488863-69488882 Msa0467980:intron 50.0%
! TTTTAATGCTGGAGGCCTGC+TGG + chr3_3:69489145-69489164 Msa0467980:CDS 50.0%
AGAGAAGCCGCAAATAGGGT+TGG - chr3_3:69489636-69489655 None:intergenic 50.0%
! AGCAAGAGTCGGTTCTGTTG+AGG + chr3_3:69490050-69490069 Msa0467980:CDS 50.0%
! GTCGGTTCTGTTGAGGACTA+TGG + chr3_3:69490057-69490076 Msa0467980:CDS 50.0%
GTGACATCACAGAATGCTGC+AGG + chr3_3:69490175-69490194 Msa0467980:intron 50.0%
ATTGTATCCAGCCCCGGTAA+GGG - chr3_3:69491280-69491299 None:intergenic 50.0%
TATTGTATCCAGCCCCGGTA+AGG - chr3_3:69491281-69491300 None:intergenic 50.0%
AGACATCCTTGATTGCTGCG+CGG + chr3_3:69491619-69491638 Msa0467980:intron 50.0%
CGATGCAAGAATCAGTCGTC+AGG + chr3_3:69492847-69492866 Msa0467980:CDS 50.0%
GTAAACCTTTGGTCCATGGG+AGG - chr3_3:69493003-69493022 None:intergenic 50.0%
TTTACTCTCCTTGCTCGAGC+TGG + chr3_3:69493018-69493037 Msa0467980:CDS 50.0%
ATCCTGTGTGTGATCCATCC+AGG + chr3_3:69493267-69493286 Msa0467980:intron 50.0%
AACCTGGATGGATCACACAC+AGG - chr3_3:69493272-69493291 None:intergenic 50.0%
TGTGTGATCCATCCAGGTTC+AGG + chr3_3:69493273-69493292 Msa0467980:intron 50.0%
! CATGGCACCGAAGGAACCTA+GGG - chr3_3:69488165-69488184 None:intergenic 55.0%
! ACATGGCACCGAAGGAACCT+AGG - chr3_3:69488166-69488185 None:intergenic 55.0%
! CAAGGTGGTGGTAACTTGCG+AGG - chr3_3:69488269-69488288 None:intergenic 55.0%
AGTTACCACCACCTTGCCAG+TGG + chr3_3:69488273-69488292 Msa0467980:CDS 55.0%
! TGACGATAGTGCCACTGGCA+AGG - chr3_3:69488287-69488306 None:intergenic 55.0%
CATGAGAGTCGGGAGCAGAA+GGG - chr3_3:69488397-69488416 None:intergenic 55.0%
TCATGAGAGTCGGGAGCAGA+AGG - chr3_3:69488398-69488417 None:intergenic 55.0%
GATTAGGCGTATCCCGGTGT+CGG - chr3_3:69488838-69488857 None:intergenic 55.0%
GCACGGACACTACTCGGATT+AGG - chr3_3:69488854-69488873 None:intergenic 55.0%
AGCCCCGTGCATTCATGTCA+AGG + chr3_3:69489212-69489231 Msa0467980:CDS 55.0%
GTTCATCTGCGCTTCCCTGA+CGG + chr3_3:69490087-69490106 Msa0467980:CDS 55.0%
! CAGTCGCATCGATCCCTTAC+CGG + chr3_3:69491264-69491283 Msa0467980:CDS 55.0%
! AGTCGCATCGATCCCTTACC+GGG + chr3_3:69491265-69491284 Msa0467980:CDS 55.0%
CATCCATCCCTTGCCCCATA+CGG + chr3_3:69491386-69491405 Msa0467980:intron 55.0%
AAACCGTATGGGGCAAGGGA+TGG - chr3_3:69491392-69491411 None:intergenic 55.0%
GACATCCTTGATTGCTGCGC+GGG + chr3_3:69491620-69491639 Msa0467980:intron 55.0%
CTAATCCCGCGCAGCAATCA+AGG - chr3_3:69491628-69491647 None:intergenic 55.0%
! GATTGCTGCGCGGGATTAGT+AGG + chr3_3:69491629-69491648 Msa0467980:intron 55.0%
! GAGGAAGGACATGGCACCGA+AGG - chr3_3:69488174-69488193 None:intergenic 60.0%
! TAGTGCCACTGGCAAGGTGG+TGG - chr3_3:69488281-69488300 None:intergenic 60.0%
! CGATAGTGCCACTGGCAAGG+TGG - chr3_3:69488284-69488303 None:intergenic 60.0%
TCATAGGTGCCAACCCCCGT+TGG - chr3_3:69488713-69488732 None:intergenic 60.0%
ACACGACACGTGTCCGACAC+CGG + chr3_3:69488822-69488841 Msa0467980:intron 60.0%
! ATGCTGGAGGCCTGCTGGTT+CGG + chr3_3:69489150-69489169 Msa0467980:CDS 60.0%
AATGCACGGGGCTCAGCTGT+GGG - chr3_3:69489205-69489224 None:intergenic 60.0%
! GTCGCATCGATCCCTTACCG+GGG + chr3_3:69491266-69491285 Msa0467980:CDS 60.0%
!! TTGGTCCATGGGAGGTGCCT+GGG - chr3_3:69492995-69493014 None:intergenic 60.0%
!! TTTGGTCCATGGGAGGTGCC+TGG - chr3_3:69492996-69493015 None:intergenic 60.0%
AGGCACCTCCCATGGACCAA+AGG + chr3_3:69492995-69493014 Msa0467980:intron 60.0%
CCTGTCTTCCAGCTCGAGCA+AGG - chr3_3:69493029-69493048 None:intergenic 60.0%
CCTTGCTCGAGCTGGAAGAC+AGG + chr3_3:69493026-69493045 Msa0467980:CDS 60.0%
CACGACACGTGTCCGACACC+GGG + chr3_3:69488823-69488842 Msa0467980:intron 65.0%
ACGGGGCTCAGCTGTGGGAA+CGG - chr3_3:69489200-69489219 None:intergenic 65.0%
GAATGCACGGGGCTCAGCTG+TGG - chr3_3:69489206-69489225 None:intergenic 65.0%
CATCGATCCCTTACCGGGGC+TGG + chr3_3:69491270-69491289 Msa0467980:CDS 65.0%
CGGGGCTCAGCTGTGGGAAC+GGG - chr3_3:69489199-69489218 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 69487992 69493626 69487992 ID=Msa0467980;Name=Msa0467980
chr3_3 mRNA 69487992 69493626 69487992 ID=Msa0467980-mRNA-1;Parent=Msa0467980;Name=Msa0467980-mRNA-1;_AED=0.02;_eAED=0.02;_QI=151|1|1|1|1|1|10|254|398
chr3_3 exon 69487992 69488436 69487992 ID=Msa0467980-mRNA-1:exon:16457;Parent=Msa0467980-mRNA-1
chr3_3 exon 69489074 69489233 69489074 ID=Msa0467980-mRNA-1:exon:16458;Parent=Msa0467980-mRNA-1
chr3_3 exon 69489524 69489585 69489524 ID=Msa0467980-mRNA-1:exon:16459;Parent=Msa0467980-mRNA-1
chr3_3 exon 69489949 69490108 69489949 ID=Msa0467980-mRNA-1:exon:16460;Parent=Msa0467980-mRNA-1
chr3_3 exon 69490197 69490317 69490197 ID=Msa0467980-mRNA-1:exon:16461;Parent=Msa0467980-mRNA-1
chr3_3 exon 69490742 69490823 69490742 ID=Msa0467980-mRNA-1:exon:16462;Parent=Msa0467980-mRNA-1
chr3_3 exon 69491223 69491326 69491223 ID=Msa0467980-mRNA-1:exon:16463;Parent=Msa0467980-mRNA-1
chr3_3 exon 69492841 69492919 69492841 ID=Msa0467980-mRNA-1:exon:16464;Parent=Msa0467980-mRNA-1
chr3_3 exon 69492997 69493047 69492997 ID=Msa0467980-mRNA-1:exon:16465;Parent=Msa0467980-mRNA-1
chr3_3 exon 69493289 69493626 69493289 ID=Msa0467980-mRNA-1:exon:16466;Parent=Msa0467980-mRNA-1
chr3_3 five_prime_UTR 69487992 69488142 69487992 ID=Msa0467980-mRNA-1:five_prime_utr;Parent=Msa0467980-mRNA-1
chr3_3 CDS 69488143 69488436 69488143 ID=Msa0467980-mRNA-1:cds;Parent=Msa0467980-mRNA-1
chr3_3 CDS 69489074 69489233 69489074 ID=Msa0467980-mRNA-1:cds;Parent=Msa0467980-mRNA-1
chr3_3 CDS 69489524 69489585 69489524 ID=Msa0467980-mRNA-1:cds;Parent=Msa0467980-mRNA-1
chr3_3 CDS 69489949 69490108 69489949 ID=Msa0467980-mRNA-1:cds;Parent=Msa0467980-mRNA-1
chr3_3 CDS 69490197 69490317 69490197 ID=Msa0467980-mRNA-1:cds;Parent=Msa0467980-mRNA-1
chr3_3 CDS 69490742 69490823 69490742 ID=Msa0467980-mRNA-1:cds;Parent=Msa0467980-mRNA-1
chr3_3 CDS 69491223 69491326 69491223 ID=Msa0467980-mRNA-1:cds;Parent=Msa0467980-mRNA-1
chr3_3 CDS 69492841 69492919 69492841 ID=Msa0467980-mRNA-1:cds;Parent=Msa0467980-mRNA-1
chr3_3 CDS 69492997 69493047 69492997 ID=Msa0467980-mRNA-1:cds;Parent=Msa0467980-mRNA-1
chr3_3 CDS 69493289 69493372 69493289 ID=Msa0467980-mRNA-1:cds;Parent=Msa0467980-mRNA-1
chr3_3 three_prime_UTR 69493373 69493626 69493373 ID=Msa0467980-mRNA-1:three_prime_utr;Parent=Msa0467980-mRNA-1
Gene Sequence

>Msa0467980

ATGGCTATCTTCTCTGCAACCCTAGGTTCCTTCGGTGCCATGTCCTTCCTCTCATCTTCACAATCACAACAACACGACCCTTCTTCTTCCTCAATCGTCAATCCTTTCAATTTCCCTAAATGCCCTCGCAAGTTACCACCACCTTGCCAGTGGCACTATCGTCATCATCACAATTATAAAATCATGGTATCTAGTAGTAGTAGTAGTAACAATACTCATATTGATGAATTCGACAGTGGTCTTCTTCAACGCCCTTCTGCTCCCGACTCTCATGATGCTCTTCGTCAAGCCAGGAGATCATCAGATTGGAAGGCTGCAAACGCATATAGAGACAGTGGACTCATTTACAATGGTAGGGTTGAGGGTTTTAATGCTGGAGGCCTGCTGGTTCGGTTTTACTCTATCATGGGCTTTCTCCCGTTCCCACAGCTGAGCCCCGTGCATTCATGTCAAGAACCAGATAAAACTATCCAAGAACTTGCAAGAGAGTTGATCGGTTCCATCTTATCAGTGAAGGTAATTATAGTAGACGAGGAGAAACGGAAATTGGTCTTATCTGAAAAGGAAGCTTCATGGTTTAAATATTCAAAACATATCAACATAGGGGACCTTTTTGAAGCAAGAGTCGGTTCTGTTGAGGACTATGGTGCTTTTGTTCATCTGCGCTTCCCTGACGGTCTTTATCACCTTACCGGACTAATACATATCTCAGAAGTGTCGTGGGATCTAGTTCAAGATGTAAGAGACTTCTTAAGAGAAGGTGAAGAAGTGAGGGTCAAAGTTATCAGTATTGATACTGTAAAAATGAGGCTTACACTGTCAATTAAACAGCTAGAAGAAGATCCACTGCTAGAAACTCTGGACAAAGTAATACCTCAGGATGGTTCAGCTGTTCCCGATTCTTTCAGCAGTACTACTAGCAGTCGCATCGATCCCTTACCGGGGCTGGATACAATACTTGAAGAGCTATTGCAGGAAGATGGCATATACGATGCAAGAATCAGTCGTCAGGGGTTTGAAAAACGAGTGGTCTCACAAGACTTGCAGCTTTGGCTTTCTAATGCACCTCCCATGGACCAAAGGTTTACTCTCCTTGCTCGAGCTGGAAGACAGGTTCAGGAGATACATCTGAAAACATCCCTTGACCAGGAAGGCATCAAAAAGGCAATACAACGAGTATTGGAGCGTGTTCCTTGA

Protein sequence

>Msa0467980

MAIFSATLGSFGAMSFLSSSQSQQHDPSSSSIVNPFNFPKCPRKLPPPCQWHYRHHHNYKIMVSSSSSSNNTHIDEFDSGLLQRPSAPDSHDALRQARRSSDWKAANAYRDSGLIYNGRVEGFNAGGLLVRFYSIMGFLPFPQLSPVHSCQEPDKTIQELARELIGSILSVKVIIVDEEKRKLVLSEKEASWFKYSKHINIGDLFEARVGSVEDYGAFVHLRFPDGLYHLTGLIHISEVSWDLVQDVRDFLREGEEVRVKVISIDTVKMRLTLSIKQLEEDPLLETLDKVIPQDGSAVPDSFSSTTSSRIDPLPGLDTILEELLQEDGIYDARISRQGFEKRVVSQDLQLWLSNAPPMDQRFTLLARAGRQVQEIHLKTSLDQEGIKKAIQRVLERVP*