AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0381130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381130 MtrunA17_Chr3g0136321 72.199 241 29 2 6 210 7 245 5.16e-111 317
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381130 AT5G21920.1 35.533 197 78 3 50 210 64 247 5.97e-27 103
Msa0381130 AT5G21920.2 49.074 108 53 1 50 157 64 169 1.14e-25 98.2

Find 69 sgRNAs with CRISPR-Local

Find 378 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTCTTAGTGGACCAATT+TGG 0.285644 3_1:+83104830 Msa0381130:CDS
GAGTTGTGGAGGGGAGAAAT+TGG 0.307574 3_1:-83104570 None:intergenic
TACTCTTAGTGGACCAATTT+GGG 0.313339 3_1:+83104831 Msa0381130:CDS
AGAGAGTAGTTTGTTTAAGA+AGG 0.343444 3_1:-83104660 None:intergenic
ATTATCGACGGCGTTGGAAA+TGG 0.365129 3_1:-83104600 None:intergenic
TTGAGAAAGGGGAATGCTAA+TGG 0.370536 3_1:-83104536 None:intergenic
GCTGGCTTAGTGGTGGCTAA+TGG 0.379478 3_1:+83104893 Msa0381130:CDS
AGCTAAGGAGTGGAGAAGTT+TGG 0.382379 3_1:-83104627 None:intergenic
GAGAGTAGTTTGTTTAAGAA+GGG 0.386231 3_1:-83104659 None:intergenic
ATGGATGTGGGGAGTTGTGG+AGG 0.386437 3_1:-83104581 None:intergenic
TGAGAAAGGGGAATGCTAAT+GGG 0.387303 3_1:-83104535 None:intergenic
CATACAAATTGGTCCCAAAT+TGG 0.389259 3_1:-83104844 None:intergenic
ATTATGATATTCTAATTTGT+AGG 0.389591 3_1:-83106473 None:intergenic
TAACCTGTAGGCACGTGTTA+TGG 0.398782 3_1:-83104697 None:intergenic
TCTGTGACTGGAAGCTCAGC+AGG 0.408614 3_1:-83106341 None:intergenic
TTACTTCTTCACAGAACAAA+TGG 0.415101 3_1:+83106411 Msa0381130:CDS
TCTTGCCTCAAGACCTTGCT+TGG 0.419675 3_1:-83106369 None:intergenic
GAAATGGATGTGGGGAGTTG+TGG 0.420790 3_1:-83104584 None:intergenic
CTGCCATCGTTGCTCCTCTC+AGG 0.431185 3_1:+83104993 Msa0381130:CDS
ACTACTGGTGATTCCGTGGC+TGG 0.435256 3_1:+83104875 Msa0381130:CDS
ACAACACCTTGCTCGTTGCC+AGG 0.436913 3_1:+83104939 Msa0381130:CDS
AGTAGTAGGTTTACTCTTAG+TGG 0.445081 3_1:+83104820 Msa0381130:CDS
TGCTTGGATTGTTCTGTGAC+TGG 0.455730 3_1:-83106353 None:intergenic
TTGCCAGGCTTGTTCTTACC+TGG 0.458380 3_1:+83104954 Msa0381130:CDS
GAGGGGAGAAATTGGAGATG+GGG 0.461617 3_1:-83104562 None:intergenic
TGAGGCGGCTTCAAGGGATC+GGG 0.461867 3_1:+83106435 Msa0381130:CDS
TGATTCCGTGGCTGGCTTAG+TGG 0.463142 3_1:+83104883 Msa0381130:CDS
TTGTATGCTTCGTCTACTAC+TGG 0.472877 3_1:+83104860 Msa0381130:CDS
AGTAGACGAAGCATACAAAT+TGG 0.477338 3_1:-83104855 None:intergenic
ATGAGGCGGCTTCAAGGGAT+CGG 0.480718 3_1:+83106434 Msa0381130:CDS
AAATGGATGAGGCGGCTTCA+AGG 0.483527 3_1:+83106428 Msa0381130:CDS
AGGGGAGAAATTGGAGATGG+GGG 0.483831 3_1:-83104561 None:intergenic
ACGATGGCAGGAGGAGCGTT+AGG 0.485173 3_1:-83104980 None:intergenic
AATGGATGAGGCGGCTTCAA+GGG 0.495750 3_1:+83106429 Msa0381130:CDS
GAGAAAGGGGAATGCTAATG+GGG 0.512370 3_1:-83104534 None:intergenic
AGAGTAGTTTGTTTAAGAAG+GGG 0.518070 3_1:-83104658 None:intergenic
GGAGGGGAGAAATTGGAGAT+GGG 0.518301 3_1:-83104563 None:intergenic
GACGGCGTTGGAAATGGATG+TGG 0.519771 3_1:-83104594 None:intergenic
CTGAGAGGAGCAACGATGGC+AGG 0.520472 3_1:-83104992 None:intergenic
GGAACAATTATCGACGGCGT+TGG 0.521064 3_1:-83104606 None:intergenic
TGGATGTGGGGAGTTGTGGA+GGG 0.527405 3_1:-83104580 None:intergenic
TGGAGGGGAGAAATTGGAGA+TGG 0.528680 3_1:-83104564 None:intergenic
GTAACTACAGGAACAGTAGT+AGG 0.531529 3_1:+83104806 Msa0381130:CDS
GATATTCTAATTTGTAGGAG+TGG 0.536702 3_1:-83106468 None:intergenic
AGGAGGAGCGTTAGGAAACC+AGG 0.547677 3_1:-83104972 None:intergenic
AAACCAGGTAAGAACAAGCC+TGG 0.548754 3_1:-83104957 None:intergenic
CTTCGTTTCTGTATCAGTGG+TGG 0.549154 3_1:-83104477 None:intergenic
CTTCTTCGTTTCTGTATCAG+TGG 0.559382 3_1:-83104480 None:intergenic
AACAAGCCTGGCAACGAGCA+AGG 0.565234 3_1:-83104945 None:intergenic
AGATTCGGTGCAGTAACTAC+AGG 0.574341 3_1:+83104794 Msa0381130:intron
GGATGTGGGGAGTTGTGGAG+GGG 0.574841 3_1:-83104579 None:intergenic
ACGGCGTTGGAAATGGATGT+GGG 0.580391 3_1:-83104593 None:intergenic
ACAATCCAAGCAAGGTCTTG+AGG 0.586357 3_1:+83106364 Msa0381130:CDS
TGTGAAGAAGTAACATCGGT+AGG 0.592614 3_1:-83106401 None:intergenic
GTCTACTACTGGTGATTCCG+TGG 0.593759 3_1:+83104871 Msa0381130:CDS
CACAGAACAAATGGATGAGG+CGG 0.594547 3_1:+83106420 Msa0381130:CDS
ATTCTAATTTGTAGGAGTGG+AGG 0.598689 3_1:-83106465 None:intergenic
CTTCACAGAACAAATGGATG+AGG 0.621441 3_1:+83106417 Msa0381130:CDS
TTCCGTGGCTGGCTTAGTGG+TGG 0.624704 3_1:+83104886 Msa0381130:CDS
TGACCTGAGAGGAGCAACGA+TGG 0.624970 3_1:-83104996 None:intergenic
GTCACAGAACAATCCAAGCA+AGG 0.632647 3_1:+83106356 Msa0381130:CDS
AGAGGAGCAACGATGGCAGG+AGG 0.633054 3_1:-83104989 None:intergenic
CTGTGACTGGAAGCTCAGCA+GGG 0.634111 3_1:-83106340 None:intergenic
AGCCACCACTAAGCCAGCCA+CGG 0.636007 3_1:-83104888 None:intergenic
AAGTTTGGAACAATTATCGA+CGG 0.638484 3_1:-83104612 None:intergenic
GCACGTGTTATGGAATTGAG+AGG 0.651865 3_1:-83104687 None:intergenic
CGGCGTTGGAAATGGATGTG+GGG 0.658267 3_1:-83104592 None:intergenic
GTTCTGTGAAGAAGTAACAT+CGG 0.677536 3_1:-83106405 None:intergenic
TAACATGTGACTGACCTGAG+AGG 0.738072 3_1:-83105007 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAGATAATTAAATTCTATT+GGG - chr3_1:83106004-83106023 None:intergenic 15.0%
!!! TCAAATATTTTGGTAATTTA+AGG - chr3_1:83106026-83106045 None:intergenic 15.0%
!!! AATAACAGAATCAAATATTT+TGG - chr3_1:83106036-83106055 None:intergenic 15.0%
!! GTAGATAATTAAATTCTATT+GGG - chr3_1:83106004-83106023 None:intergenic 15.0%
!!! TCAAATATTTTGGTAATTTA+AGG - chr3_1:83106026-83106045 None:intergenic 15.0%
!!! AATAACAGAATCAAATATTT+TGG - chr3_1:83106036-83106055 None:intergenic 15.0%
!! GTTAGAAAATTATAGTAGAA+TGG + chr3_1:83105057-83105076 Msa0381130:intron 20.0%
!!! TATTTTTTTGTTGAAATGCA+AGG + chr3_1:83105140-83105159 Msa0381130:intron 20.0%
!!! ATTTTTTTGTTGAAATGCAA+GGG + chr3_1:83105141-83105160 Msa0381130:intron 20.0%
!! TTGAATTATTAACTAAGTCA+CGG - chr3_1:83105238-83105257 None:intergenic 20.0%
!! GGTAGATAATTAAATTCTAT+TGG - chr3_1:83106005-83106024 None:intergenic 20.0%
!! ATTAAAATTATTAGCTACGT+TGG - chr3_1:83106126-83106145 None:intergenic 20.0%
!! GTTAGAAAATTATAGTAGAA+TGG + chr3_1:83105057-83105076 Msa0381130:intron 20.0%
!!! TATTTTTTTGTTGAAATGCA+AGG + chr3_1:83105140-83105159 Msa0381130:intron 20.0%
!!! ATTTTTTTGTTGAAATGCAA+GGG + chr3_1:83105141-83105160 Msa0381130:intron 20.0%
!! TTGAATTATTAACTAAGTCA+CGG - chr3_1:83105238-83105257 None:intergenic 20.0%
!! GGTAGATAATTAAATTCTAT+TGG - chr3_1:83106005-83106024 None:intergenic 20.0%
!! ATTAAAATTATTAGCTACGT+TGG - chr3_1:83106126-83106145 None:intergenic 20.0%
! GAAAATTATAGTAGAATGGT+TGG + chr3_1:83105061-83105080 Msa0381130:intron 25.0%
!! AAAATTTTATCTTCCATGAG+TGG + chr3_1:83105100-83105119 Msa0381130:intron 25.0%
! TATCATGTGACAAAAACATA+GGG - chr3_1:83105299-83105318 None:intergenic 25.0%
! TTATCATGTGACAAAAACAT+AGG - chr3_1:83105300-83105319 None:intergenic 25.0%
!!! TATGTTTTTGTCACATGATA+AGG + chr3_1:83105299-83105318 Msa0381130:intron 25.0%
!!! ATGTTTTTGTCACATGATAA+GGG + chr3_1:83105300-83105319 Msa0381130:intron 25.0%
! TTGTCAAAAGTTTCACAATT+GGG - chr3_1:83105327-83105346 None:intergenic 25.0%
!! CTAGTTTGAAATCTTAACAA+AGG + chr3_1:83105355-83105374 Msa0381130:intron 25.0%
! TAGCATTTCTCTTAGAAAAA+TGG + chr3_1:83105638-83105657 Msa0381130:intron 25.0%
! AGCATTTCTCTTAGAAAAAT+GGG + chr3_1:83105639-83105658 Msa0381130:intron 25.0%
!! ACCATTTGATTTCAATCAAA+TGG - chr3_1:83105838-83105857 None:intergenic 25.0%
!! TCAAGTATTTTCTACGTAAA+TGG - chr3_1:83105961-83105980 None:intergenic 25.0%
! AATTTGAGTGTTCAATAAAG+TGG + chr3_1:83106178-83106197 Msa0381130:intron 25.0%
! GAAAATTATAGTAGAATGGT+TGG + chr3_1:83105061-83105080 Msa0381130:intron 25.0%
!! AAAATTTTATCTTCCATGAG+TGG + chr3_1:83105100-83105119 Msa0381130:intron 25.0%
! TATCATGTGACAAAAACATA+GGG - chr3_1:83105299-83105318 None:intergenic 25.0%
! TTATCATGTGACAAAAACAT+AGG - chr3_1:83105300-83105319 None:intergenic 25.0%
!!! TATGTTTTTGTCACATGATA+AGG + chr3_1:83105299-83105318 Msa0381130:intron 25.0%
!!! ATGTTTTTGTCACATGATAA+GGG + chr3_1:83105300-83105319 Msa0381130:intron 25.0%
! TTGTCAAAAGTTTCACAATT+GGG - chr3_1:83105327-83105346 None:intergenic 25.0%
!! CTAGTTTGAAATCTTAACAA+AGG + chr3_1:83105355-83105374 Msa0381130:intron 25.0%
! TAGCATTTCTCTTAGAAAAA+TGG + chr3_1:83105638-83105657 Msa0381130:intron 25.0%
! AGCATTTCTCTTAGAAAAAT+GGG + chr3_1:83105639-83105658 Msa0381130:intron 25.0%
!! ACCATTTGATTTCAATCAAA+TGG - chr3_1:83105838-83105857 None:intergenic 25.0%
!! TCAAGTATTTTCTACGTAAA+TGG - chr3_1:83105961-83105980 None:intergenic 25.0%
! AATTTGAGTGTTCAATAAAG+TGG + chr3_1:83106178-83106197 Msa0381130:intron 25.0%
! AAGTTTGGAACAATTATCGA+CGG - chr3_1:83104615-83104634 None:intergenic 30.0%
!! AGAGTAGTTTGTTTAAGAAG+GGG - chr3_1:83104661-83104680 None:intergenic 30.0%
!! GAGAGTAGTTTGTTTAAGAA+GGG - chr3_1:83104662-83104681 None:intergenic 30.0%
!! AGAGAGTAGTTTGTTTAAGA+AGG - chr3_1:83104663-83104682 None:intergenic 30.0%
AATTATAGTAGAATGGTTGG+AGG + chr3_1:83105064-83105083 Msa0381130:intron 30.0%
!! TTCAAACTAGTCTCTGTTTT+TGG + chr3_1:83105253-83105272 Msa0381130:intron 30.0%
! TTGGCAAAAGTTTATCGATT+CGG + chr3_1:83105272-83105291 Msa0381130:intron 30.0%
CTTGTCAAAAGTTTCACAAT+TGG - chr3_1:83105328-83105347 None:intergenic 30.0%
CATTTGATCTTCCACTTTAT+TGG + chr3_1:83105524-83105543 Msa0381130:intron 30.0%
TTCCACTTTATTGGAATACA+TGG + chr3_1:83105533-83105552 Msa0381130:intron 30.0%
TCCACTTTATTGGAATACAT+GGG + chr3_1:83105534-83105553 Msa0381130:intron 30.0%
! TAAGAGAAATGCTACTTGTA+GGG - chr3_1:83105632-83105651 None:intergenic 30.0%
GCCATTTGATTGAAATCAAA+TGG + chr3_1:83105834-83105853 Msa0381130:intron 30.0%
CTTCATGTTTCTTCACTTAT+TGG + chr3_1:83106080-83106099 Msa0381130:intron 30.0%
ACAGCATACACAGATTTAAT+TGG + chr3_1:83106149-83106168 Msa0381130:intron 30.0%
TTACTTCTTCACAGAACAAA+TGG + chr3_1:83106411-83106430 Msa0381130:CDS 30.0%
! AAGTTTGGAACAATTATCGA+CGG - chr3_1:83104615-83104634 None:intergenic 30.0%
!! AGAGTAGTTTGTTTAAGAAG+GGG - chr3_1:83104661-83104680 None:intergenic 30.0%
!! GAGAGTAGTTTGTTTAAGAA+GGG - chr3_1:83104662-83104681 None:intergenic 30.0%
!! AGAGAGTAGTTTGTTTAAGA+AGG - chr3_1:83104663-83104682 None:intergenic 30.0%
AATTATAGTAGAATGGTTGG+AGG + chr3_1:83105064-83105083 Msa0381130:intron 30.0%
!! TTCAAACTAGTCTCTGTTTT+TGG + chr3_1:83105253-83105272 Msa0381130:intron 30.0%
! TTGGCAAAAGTTTATCGATT+CGG + chr3_1:83105272-83105291 Msa0381130:intron 30.0%
CTTGTCAAAAGTTTCACAAT+TGG - chr3_1:83105328-83105347 None:intergenic 30.0%
CATTTGATCTTCCACTTTAT+TGG + chr3_1:83105524-83105543 Msa0381130:intron 30.0%
TTCCACTTTATTGGAATACA+TGG + chr3_1:83105533-83105552 Msa0381130:intron 30.0%
TCCACTTTATTGGAATACAT+GGG + chr3_1:83105534-83105553 Msa0381130:intron 30.0%
! TAAGAGAAATGCTACTTGTA+GGG - chr3_1:83105632-83105651 None:intergenic 30.0%
GCCATTTGATTGAAATCAAA+TGG + chr3_1:83105834-83105853 Msa0381130:intron 30.0%
CTTCATGTTTCTTCACTTAT+TGG + chr3_1:83106080-83106099 Msa0381130:intron 30.0%
ACAGCATACACAGATTTAAT+TGG + chr3_1:83106149-83106168 Msa0381130:intron 30.0%
TTACTTCTTCACAGAACAAA+TGG + chr3_1:83106411-83106430 Msa0381130:CDS 30.0%
! TGCAACTTTTACTAACCTGT+AGG - chr3_1:83104712-83104731 None:intergenic 35.0%
AGTAGTAGGTTTACTCTTAG+TGG + chr3_1:83104820-83104839 Msa0381130:CDS 35.0%
! TTACTCTTAGTGGACCAATT+TGG + chr3_1:83104830-83104849 Msa0381130:CDS 35.0%
! TACTCTTAGTGGACCAATTT+GGG + chr3_1:83104831-83104850 Msa0381130:CDS 35.0%
CATACAAATTGGTCCCAAAT+TGG - chr3_1:83104847-83104866 None:intergenic 35.0%
AGTAGACGAAGCATACAAAT+TGG - chr3_1:83104858-83104877 None:intergenic 35.0%
GAATGAGTAAACCACCAAAT+TGG + chr3_1:83105180-83105199 Msa0381130:intron 35.0%
AAAGATAGGTACCAATTTGG+TGG - chr3_1:83105194-83105213 None:intergenic 35.0%
CACAAAGATAGGTACCAATT+TGG - chr3_1:83105197-83105216 None:intergenic 35.0%
! ACTAAGTCACGGACTAATTT+GGG - chr3_1:83105227-83105246 None:intergenic 35.0%
! AACTAAGTCACGGACTAATT+TGG - chr3_1:83105228-83105247 None:intergenic 35.0%
TACAAAGATAGGGACCAATT+TGG + chr3_1:83105401-83105420 Msa0381130:intron 35.0%
CTAAGAGTAAACCACCAAAT+TGG - chr3_1:83105418-83105437 None:intergenic 35.0%
! ATTTGGTGGTTTACTCTTAG+TGG + chr3_1:83105418-83105437 Msa0381130:intron 35.0%
ACCCATGTATTCCAATAAAG+TGG - chr3_1:83105538-83105557 None:intergenic 35.0%
ACTTTATTGGAATACATGGG+TGG + chr3_1:83105537-83105556 Msa0381130:intron 35.0%
GTGGTTACACAAGAATTACA+AGG + chr3_1:83105556-83105575 Msa0381130:intron 35.0%
GTTACACAAGAATTACAAGG+AGG + chr3_1:83105559-83105578 Msa0381130:intron 35.0%
! CTAAGAGAAATGCTACTTGT+AGG - chr3_1:83105633-83105652 None:intergenic 35.0%
! AGAAAAATGGGATGCTTTTG+AGG + chr3_1:83105651-83105670 Msa0381130:intron 35.0%
ACACGTAAGTTCCATACTTA+AGG + chr3_1:83105710-83105729 Msa0381130:intron 35.0%
CGTAGAAAATACTTGAGTAG+CGG + chr3_1:83105965-83105984 Msa0381130:intron 35.0%
GTAGAAAATACTTGAGTAGC+GGG + chr3_1:83105966-83105985 Msa0381130:intron 35.0%
ATTCAAATACGGGTCACATA+CGG - chr3_1:83106222-83106241 None:intergenic 35.0%
CACGGAATACATTCAAATAC+GGG - chr3_1:83106232-83106251 None:intergenic 35.0%
CCACGGAATACATTCAAATA+CGG - chr3_1:83106233-83106252 None:intergenic 35.0%
CGTATTTGAATGTATTCCGT+GGG + chr3_1:83106231-83106250 Msa0381130:intron 35.0%
CATTCAAAACAAGGAATGCT+AGG - chr3_1:83106295-83106314 None:intergenic 35.0%
!! TAGTGAAGGCATTCAAAACA+AGG - chr3_1:83106304-83106323 None:intergenic 35.0%
GTTCTGTGAAGAAGTAACAT+CGG - chr3_1:83106408-83106427 None:intergenic 35.0%
! TGCAACTTTTACTAACCTGT+AGG - chr3_1:83104712-83104731 None:intergenic 35.0%
AGTAGTAGGTTTACTCTTAG+TGG + chr3_1:83104820-83104839 Msa0381130:CDS 35.0%
! TTACTCTTAGTGGACCAATT+TGG + chr3_1:83104830-83104849 Msa0381130:CDS 35.0%
! TACTCTTAGTGGACCAATTT+GGG + chr3_1:83104831-83104850 Msa0381130:CDS 35.0%
CATACAAATTGGTCCCAAAT+TGG - chr3_1:83104847-83104866 None:intergenic 35.0%
AGTAGACGAAGCATACAAAT+TGG - chr3_1:83104858-83104877 None:intergenic 35.0%
GAATGAGTAAACCACCAAAT+TGG + chr3_1:83105180-83105199 Msa0381130:intron 35.0%
AAAGATAGGTACCAATTTGG+TGG - chr3_1:83105194-83105213 None:intergenic 35.0%
CACAAAGATAGGTACCAATT+TGG - chr3_1:83105197-83105216 None:intergenic 35.0%
! ACTAAGTCACGGACTAATTT+GGG - chr3_1:83105227-83105246 None:intergenic 35.0%
! AACTAAGTCACGGACTAATT+TGG - chr3_1:83105228-83105247 None:intergenic 35.0%
TACAAAGATAGGGACCAATT+TGG + chr3_1:83105401-83105420 Msa0381130:intron 35.0%
CTAAGAGTAAACCACCAAAT+TGG - chr3_1:83105418-83105437 None:intergenic 35.0%
! ATTTGGTGGTTTACTCTTAG+TGG + chr3_1:83105418-83105437 Msa0381130:intron 35.0%
ACCCATGTATTCCAATAAAG+TGG - chr3_1:83105538-83105557 None:intergenic 35.0%
ACTTTATTGGAATACATGGG+TGG + chr3_1:83105537-83105556 Msa0381130:intron 35.0%
GTGGTTACACAAGAATTACA+AGG + chr3_1:83105556-83105575 Msa0381130:intron 35.0%
GTTACACAAGAATTACAAGG+AGG + chr3_1:83105559-83105578 Msa0381130:intron 35.0%
! CTAAGAGAAATGCTACTTGT+AGG - chr3_1:83105633-83105652 None:intergenic 35.0%
! AGAAAAATGGGATGCTTTTG+AGG + chr3_1:83105651-83105670 Msa0381130:intron 35.0%
ACACGTAAGTTCCATACTTA+AGG + chr3_1:83105710-83105729 Msa0381130:intron 35.0%
CGTAGAAAATACTTGAGTAG+CGG + chr3_1:83105965-83105984 Msa0381130:intron 35.0%
GTAGAAAATACTTGAGTAGC+GGG + chr3_1:83105966-83105985 Msa0381130:intron 35.0%
ATTCAAATACGGGTCACATA+CGG - chr3_1:83106222-83106241 None:intergenic 35.0%
CACGGAATACATTCAAATAC+GGG - chr3_1:83106232-83106251 None:intergenic 35.0%
CCACGGAATACATTCAAATA+CGG - chr3_1:83106233-83106252 None:intergenic 35.0%
CGTATTTGAATGTATTCCGT+GGG + chr3_1:83106231-83106250 Msa0381130:intron 35.0%
CATTCAAAACAAGGAATGCT+AGG - chr3_1:83106295-83106314 None:intergenic 35.0%
!! TAGTGAAGGCATTCAAAACA+AGG - chr3_1:83106304-83106323 None:intergenic 35.0%
GTTCTGTGAAGAAGTAACAT+CGG - chr3_1:83106408-83106427 None:intergenic 35.0%
CTTCTTCGTTTCTGTATCAG+TGG - chr3_1:83104483-83104502 None:intergenic 40.0%
! AGAAGAACGTCTCGTTTTGT+TGG + chr3_1:83104498-83104517 Msa0381130:CDS 40.0%
!! GAAGAACGTCTCGTTTTGTT+GGG + chr3_1:83104499-83104518 Msa0381130:CDS 40.0%
!! AAGAACGTCTCGTTTTGTTG+GGG + chr3_1:83104500-83104519 Msa0381130:CDS 40.0%
TGAGAAAGGGGAATGCTAAT+GGG - chr3_1:83104538-83104557 None:intergenic 40.0%
TTGAGAAAGGGGAATGCTAA+TGG - chr3_1:83104539-83104558 None:intergenic 40.0%
TATGCTTCGTCTACCAGATT+CGG + chr3_1:83104779-83104798 Msa0381130:intron 40.0%
GTAACTACAGGAACAGTAGT+AGG + chr3_1:83104806-83104825 Msa0381130:CDS 40.0%
TTGTATGCTTCGTCTACTAC+TGG + chr3_1:83104860-83104879 Msa0381130:CDS 40.0%
GTCACATGTTAGTCACAATG+TGG + chr3_1:83105019-83105038 Msa0381130:intron 40.0%
AATGCACTGTTATCCACTCA+TGG - chr3_1:83105116-83105135 None:intergenic 40.0%
TGAGAGAGGCTTACAAAGAT+AGG + chr3_1:83105390-83105409 Msa0381130:intron 40.0%
GAGAGAGGCTTACAAAGATA+GGG + chr3_1:83105391-83105410 Msa0381130:intron 40.0%
AAAGATAGGGACCAATTTGG+TGG + chr3_1:83105404-83105423 Msa0381130:intron 40.0%
!! AGAGTTTCGCGAGTTGTTTT+TGG + chr3_1:83105500-83105519 Msa0381130:intron 40.0%
ACACAAGAATTACAAGGAGG+AGG + chr3_1:83105562-83105581 Msa0381130:intron 40.0%
!! AAAATGGGATGCTTTTGAGG+TGG + chr3_1:83105654-83105673 Msa0381130:intron 40.0%
!! TTGAGGTGGTTGAGTTGAAA+AGG + chr3_1:83105668-83105687 Msa0381130:intron 40.0%
!! TGAGGTGGTTGAGTTGAAAA+GGG + chr3_1:83105669-83105688 Msa0381130:intron 40.0%
TAAGTTCCATACTTAAGGCC+AGG + chr3_1:83105715-83105734 Msa0381130:intron 40.0%
AAGTTCCATACTTAAGGCCA+GGG + chr3_1:83105716-83105735 Msa0381130:intron 40.0%
! TAGGTTGGATGCTATTAGAG+AGG + chr3_1:83105764-83105783 Msa0381130:intron 40.0%
AGGTTGGATGCTATTAGAGA+GGG + chr3_1:83105765-83105784 Msa0381130:intron 40.0%
GAATCCTATCGTCAATGCAT+TGG + chr3_1:83105810-83105829 Msa0381130:intron 40.0%
GATGATTGAAGTCTTCTTGC+AGG + chr3_1:83105914-83105933 Msa0381130:intron 40.0%
! TCTACGTAAATGGATTCCCT+AGG - chr3_1:83105951-83105970 None:intergenic 40.0%
AAGTTACAGCATACGCATCA+GGG - chr3_1:83106063-83106082 None:intergenic 40.0%
CCGTATTTGAATGTATTCCG+TGG + chr3_1:83106230-83106249 Msa0381130:intron 40.0%
TGTGAAGAAGTAACATCGGT+AGG - chr3_1:83106404-83106423 None:intergenic 40.0%
CTTCACAGAACAAATGGATG+AGG + chr3_1:83106417-83106436 Msa0381130:CDS 40.0%
CTTCTTCGTTTCTGTATCAG+TGG - chr3_1:83104483-83104502 None:intergenic 40.0%
! AGAAGAACGTCTCGTTTTGT+TGG + chr3_1:83104498-83104517 Msa0381130:CDS 40.0%
!! GAAGAACGTCTCGTTTTGTT+GGG + chr3_1:83104499-83104518 Msa0381130:CDS 40.0%
!! AAGAACGTCTCGTTTTGTTG+GGG + chr3_1:83104500-83104519 Msa0381130:CDS 40.0%
TGAGAAAGGGGAATGCTAAT+GGG - chr3_1:83104538-83104557 None:intergenic 40.0%
TTGAGAAAGGGGAATGCTAA+TGG - chr3_1:83104539-83104558 None:intergenic 40.0%
TATGCTTCGTCTACCAGATT+CGG + chr3_1:83104779-83104798 Msa0381130:intron 40.0%
GTAACTACAGGAACAGTAGT+AGG + chr3_1:83104806-83104825 Msa0381130:CDS 40.0%
TTGTATGCTTCGTCTACTAC+TGG + chr3_1:83104860-83104879 Msa0381130:CDS 40.0%
GTCACATGTTAGTCACAATG+TGG + chr3_1:83105019-83105038 Msa0381130:intron 40.0%
AATGCACTGTTATCCACTCA+TGG - chr3_1:83105116-83105135 None:intergenic 40.0%
TGAGAGAGGCTTACAAAGAT+AGG + chr3_1:83105390-83105409 Msa0381130:intron 40.0%
GAGAGAGGCTTACAAAGATA+GGG + chr3_1:83105391-83105410 Msa0381130:intron 40.0%
AAAGATAGGGACCAATTTGG+TGG + chr3_1:83105404-83105423 Msa0381130:intron 40.0%
!! AGAGTTTCGCGAGTTGTTTT+TGG + chr3_1:83105500-83105519 Msa0381130:intron 40.0%
ACACAAGAATTACAAGGAGG+AGG + chr3_1:83105562-83105581 Msa0381130:intron 40.0%
!! AAAATGGGATGCTTTTGAGG+TGG + chr3_1:83105654-83105673 Msa0381130:intron 40.0%
!! TTGAGGTGGTTGAGTTGAAA+AGG + chr3_1:83105668-83105687 Msa0381130:intron 40.0%
!! TGAGGTGGTTGAGTTGAAAA+GGG + chr3_1:83105669-83105688 Msa0381130:intron 40.0%
TAAGTTCCATACTTAAGGCC+AGG + chr3_1:83105715-83105734 Msa0381130:intron 40.0%
AAGTTCCATACTTAAGGCCA+GGG + chr3_1:83105716-83105735 Msa0381130:intron 40.0%
! TAGGTTGGATGCTATTAGAG+AGG + chr3_1:83105764-83105783 Msa0381130:intron 40.0%
AGGTTGGATGCTATTAGAGA+GGG + chr3_1:83105765-83105784 Msa0381130:intron 40.0%
GAATCCTATCGTCAATGCAT+TGG + chr3_1:83105810-83105829 Msa0381130:intron 40.0%
GATGATTGAAGTCTTCTTGC+AGG + chr3_1:83105914-83105933 Msa0381130:intron 40.0%
! TCTACGTAAATGGATTCCCT+AGG - chr3_1:83105951-83105970 None:intergenic 40.0%
AAGTTACAGCATACGCATCA+GGG - chr3_1:83106063-83106082 None:intergenic 40.0%
CCGTATTTGAATGTATTCCG+TGG + chr3_1:83106230-83106249 Msa0381130:intron 40.0%
TGTGAAGAAGTAACATCGGT+AGG - chr3_1:83106404-83106423 None:intergenic 40.0%
CTTCACAGAACAAATGGATG+AGG + chr3_1:83106417-83106436 Msa0381130:CDS 40.0%
CTTCGTTTCTGTATCAGTGG+TGG - chr3_1:83104480-83104499 None:intergenic 45.0%
GAGAAAGGGGAATGCTAATG+GGG - chr3_1:83104537-83104556 None:intergenic 45.0%
AGATGGGGGATTTGAGAAAG+GGG - chr3_1:83104550-83104569 None:intergenic 45.0%
GAGATGGGGGATTTGAGAAA+GGG - chr3_1:83104551-83104570 None:intergenic 45.0%
! ATTATCGACGGCGTTGGAAA+TGG - chr3_1:83104603-83104622 None:intergenic 45.0%
AGCTAAGGAGTGGAGAAGTT+TGG - chr3_1:83104630-83104649 None:intergenic 45.0%
!!! GGTTTTGAGAAGCTAAGGAG+TGG - chr3_1:83104640-83104659 None:intergenic 45.0%
!!! GAAGGGGTTTTGAGAAGCTA+AGG - chr3_1:83104645-83104664 None:intergenic 45.0%
GCACGTGTTATGGAATTGAG+AGG - chr3_1:83104690-83104709 None:intergenic 45.0%
ATTCCATAACACGTGCCTAC+AGG + chr3_1:83104694-83104713 Msa0381130:intron 45.0%
TAACCTGTAGGCACGTGTTA+TGG - chr3_1:83104700-83104719 None:intergenic 45.0%
TGTAGTTACTGCACCGAATC+TGG - chr3_1:83104795-83104814 None:intergenic 45.0%
!! AGATTCGGTGCAGTAACTAC+AGG + chr3_1:83104794-83104813 Msa0381130:intron 45.0%
AAACCAGGTAAGAACAAGCC+TGG - chr3_1:83104960-83104979 None:intergenic 45.0%
TAACATGTGACTGACCTGAG+AGG - chr3_1:83105010-83105029 None:intergenic 45.0%
TTTGTTGAAATGCAAGGGCG+TGG + chr3_1:83105146-83105165 Msa0381130:intron 45.0%
! TTGTTGAAATGCAAGGGCGT+GGG + chr3_1:83105147-83105166 Msa0381130:intron 45.0%
TGGGAGTAGCTCACAAAGAT+AGG - chr3_1:83105208-83105227 None:intergenic 45.0%
!! GAATTCCCTGGCCTTAAGTA+TGG - chr3_1:83105724-83105743 None:intergenic 45.0%
TTAAGGCCAGGGAATTCCAA+TGG + chr3_1:83105727-83105746 Msa0381130:intron 45.0%
TAAGGCCAGGGAATTCCAAT+GGG + chr3_1:83105728-83105747 Msa0381130:intron 45.0%
TACAATCCAACACCTCCCAT+TGG - chr3_1:83105746-83105765 None:intergenic 45.0%
!! AATGGGAGGTGTTGGATTGT+AGG + chr3_1:83105745-83105764 Msa0381130:intron 45.0%
ACCTAGATTCTCCACGGTTA+GGG + chr3_1:83105788-83105807 Msa0381130:intron 45.0%
GAAGTTACAGCATACGCATC+AGG - chr3_1:83106064-83106083 None:intergenic 45.0%
TGCTTGGATTGTTCTGTGAC+TGG - chr3_1:83106356-83106375 None:intergenic 45.0%
GTCACAGAACAATCCAAGCA+AGG + chr3_1:83106356-83106375 Msa0381130:CDS 45.0%
ACAATCCAAGCAAGGTCTTG+AGG + chr3_1:83106364-83106383 Msa0381130:CDS 45.0%
CACAGAACAAATGGATGAGG+CGG + chr3_1:83106420-83106439 Msa0381130:CDS 45.0%
CTTCGTTTCTGTATCAGTGG+TGG - chr3_1:83104480-83104499 None:intergenic 45.0%
GAGAAAGGGGAATGCTAATG+GGG - chr3_1:83104537-83104556 None:intergenic 45.0%
AGATGGGGGATTTGAGAAAG+GGG - chr3_1:83104550-83104569 None:intergenic 45.0%
GAGATGGGGGATTTGAGAAA+GGG - chr3_1:83104551-83104570 None:intergenic 45.0%
! ATTATCGACGGCGTTGGAAA+TGG - chr3_1:83104603-83104622 None:intergenic 45.0%
AGCTAAGGAGTGGAGAAGTT+TGG - chr3_1:83104630-83104649 None:intergenic 45.0%
!!! GGTTTTGAGAAGCTAAGGAG+TGG - chr3_1:83104640-83104659 None:intergenic 45.0%
!!! GAAGGGGTTTTGAGAAGCTA+AGG - chr3_1:83104645-83104664 None:intergenic 45.0%
GCACGTGTTATGGAATTGAG+AGG - chr3_1:83104690-83104709 None:intergenic 45.0%
ATTCCATAACACGTGCCTAC+AGG + chr3_1:83104694-83104713 Msa0381130:intron 45.0%
TAACCTGTAGGCACGTGTTA+TGG - chr3_1:83104700-83104719 None:intergenic 45.0%
TGTAGTTACTGCACCGAATC+TGG - chr3_1:83104795-83104814 None:intergenic 45.0%
!! AGATTCGGTGCAGTAACTAC+AGG + chr3_1:83104794-83104813 Msa0381130:intron 45.0%
AAACCAGGTAAGAACAAGCC+TGG - chr3_1:83104960-83104979 None:intergenic 45.0%
TAACATGTGACTGACCTGAG+AGG - chr3_1:83105010-83105029 None:intergenic 45.0%
TTTGTTGAAATGCAAGGGCG+TGG + chr3_1:83105146-83105165 Msa0381130:intron 45.0%
! TTGTTGAAATGCAAGGGCGT+GGG + chr3_1:83105147-83105166 Msa0381130:intron 45.0%
TGGGAGTAGCTCACAAAGAT+AGG - chr3_1:83105208-83105227 None:intergenic 45.0%
!! GAATTCCCTGGCCTTAAGTA+TGG - chr3_1:83105724-83105743 None:intergenic 45.0%
TTAAGGCCAGGGAATTCCAA+TGG + chr3_1:83105727-83105746 Msa0381130:intron 45.0%
TAAGGCCAGGGAATTCCAAT+GGG + chr3_1:83105728-83105747 Msa0381130:intron 45.0%
TACAATCCAACACCTCCCAT+TGG - chr3_1:83105746-83105765 None:intergenic 45.0%
!! AATGGGAGGTGTTGGATTGT+AGG + chr3_1:83105745-83105764 Msa0381130:intron 45.0%
ACCTAGATTCTCCACGGTTA+GGG + chr3_1:83105788-83105807 Msa0381130:intron 45.0%
GAAGTTACAGCATACGCATC+AGG - chr3_1:83106064-83106083 None:intergenic 45.0%
TGCTTGGATTGTTCTGTGAC+TGG - chr3_1:83106356-83106375 None:intergenic 45.0%
GTCACAGAACAATCCAAGCA+AGG + chr3_1:83106356-83106375 Msa0381130:CDS 45.0%
ACAATCCAAGCAAGGTCTTG+AGG + chr3_1:83106364-83106383 Msa0381130:CDS 45.0%
CACAGAACAAATGGATGAGG+CGG + chr3_1:83106420-83106439 Msa0381130:CDS 45.0%
GGAGATGGGGGATTTGAGAA+AGG - chr3_1:83104552-83104571 None:intergenic 50.0%
AGGGGAGAAATTGGAGATGG+GGG - chr3_1:83104564-83104583 None:intergenic 50.0%
GAGGGGAGAAATTGGAGATG+GGG - chr3_1:83104565-83104584 None:intergenic 50.0%
GGAGGGGAGAAATTGGAGAT+GGG - chr3_1:83104566-83104585 None:intergenic 50.0%
TGGAGGGGAGAAATTGGAGA+TGG - chr3_1:83104567-83104586 None:intergenic 50.0%
GAGTTGTGGAGGGGAGAAAT+TGG - chr3_1:83104573-83104592 None:intergenic 50.0%
GAAATGGATGTGGGGAGTTG+TGG - chr3_1:83104587-83104606 None:intergenic 50.0%
! ACGGCGTTGGAAATGGATGT+GGG - chr3_1:83104596-83104615 None:intergenic 50.0%
GGAACAATTATCGACGGCGT+TGG - chr3_1:83104609-83104628 None:intergenic 50.0%
GTCTACTACTGGTGATTCCG+TGG + chr3_1:83104871-83104890 Msa0381130:CDS 50.0%
! TTGCCAGGCTTGTTCTTACC+TGG + chr3_1:83104954-83104973 Msa0381130:CDS 50.0%
! TGTTGAAATGCAAGGGCGTG+GGG + chr3_1:83105148-83105167 Msa0381130:intron 50.0%
!! GGCAGAGACTGATTTGAGAG+AGG + chr3_1:83105376-83105395 Msa0381130:intron 50.0%
! GGAATTCCAATGGGAGGTGT+TGG + chr3_1:83105737-83105756 Msa0381130:intron 50.0%
!! GGAGGTGTTGGATTGTAGGT+TGG + chr3_1:83105749-83105768 Msa0381130:intron 50.0%
AGAGGGACCTAGATTCTCCA+CGG + chr3_1:83105782-83105801 Msa0381130:intron 50.0%
GACCTAGATTCTCCACGGTT+AGG + chr3_1:83105787-83105806 Msa0381130:intron 50.0%
TCCCTAACCGTGGAGAATCT+AGG - chr3_1:83105792-83105811 None:intergenic 50.0%
ACGATAGGATTCCCTAACCG+TGG - chr3_1:83105802-83105821 None:intergenic 50.0%
! GGCTCCAATGCATTGACGAT+AGG - chr3_1:83105817-83105836 None:intergenic 50.0%
GGATTCCCTAGGTCAGATAG+TGG - chr3_1:83105940-83105959 None:intergenic 50.0%
! CTTGAGTAGCGGGATGCAAT+TGG + chr3_1:83105976-83105995 Msa0381130:intron 50.0%
AGAGATCCAGTCCTCCAAGA+GGG - chr3_1:83106265-83106284 None:intergenic 50.0%
TGCAACAGCAGTGCTAGTGA+AGG - chr3_1:83106318-83106337 None:intergenic 50.0%
TCTTGCCTCAAGACCTTGCT+TGG - chr3_1:83106372-83106391 None:intergenic 50.0%
AAATGGATGAGGCGGCTTCA+AGG + chr3_1:83106428-83106447 Msa0381130:CDS 50.0%
AATGGATGAGGCGGCTTCAA+GGG + chr3_1:83106429-83106448 Msa0381130:CDS 50.0%
GGAGATGGGGGATTTGAGAA+AGG - chr3_1:83104552-83104571 None:intergenic 50.0%
AGGGGAGAAATTGGAGATGG+GGG - chr3_1:83104564-83104583 None:intergenic 50.0%
GAGGGGAGAAATTGGAGATG+GGG - chr3_1:83104565-83104584 None:intergenic 50.0%
GGAGGGGAGAAATTGGAGAT+GGG - chr3_1:83104566-83104585 None:intergenic 50.0%
TGGAGGGGAGAAATTGGAGA+TGG - chr3_1:83104567-83104586 None:intergenic 50.0%
GAGTTGTGGAGGGGAGAAAT+TGG - chr3_1:83104573-83104592 None:intergenic 50.0%
GAAATGGATGTGGGGAGTTG+TGG - chr3_1:83104587-83104606 None:intergenic 50.0%
! ACGGCGTTGGAAATGGATGT+GGG - chr3_1:83104596-83104615 None:intergenic 50.0%
GGAACAATTATCGACGGCGT+TGG - chr3_1:83104609-83104628 None:intergenic 50.0%
GTCTACTACTGGTGATTCCG+TGG + chr3_1:83104871-83104890 Msa0381130:CDS 50.0%
! TTGCCAGGCTTGTTCTTACC+TGG + chr3_1:83104954-83104973 Msa0381130:CDS 50.0%
! TGTTGAAATGCAAGGGCGTG+GGG + chr3_1:83105148-83105167 Msa0381130:intron 50.0%
!! GGCAGAGACTGATTTGAGAG+AGG + chr3_1:83105376-83105395 Msa0381130:intron 50.0%
! GGAATTCCAATGGGAGGTGT+TGG + chr3_1:83105737-83105756 Msa0381130:intron 50.0%
!! GGAGGTGTTGGATTGTAGGT+TGG + chr3_1:83105749-83105768 Msa0381130:intron 50.0%
AGAGGGACCTAGATTCTCCA+CGG + chr3_1:83105782-83105801 Msa0381130:intron 50.0%
GACCTAGATTCTCCACGGTT+AGG + chr3_1:83105787-83105806 Msa0381130:intron 50.0%
TCCCTAACCGTGGAGAATCT+AGG - chr3_1:83105792-83105811 None:intergenic 50.0%
ACGATAGGATTCCCTAACCG+TGG - chr3_1:83105802-83105821 None:intergenic 50.0%
! GGCTCCAATGCATTGACGAT+AGG - chr3_1:83105817-83105836 None:intergenic 50.0%
GGATTCCCTAGGTCAGATAG+TGG - chr3_1:83105940-83105959 None:intergenic 50.0%
! CTTGAGTAGCGGGATGCAAT+TGG + chr3_1:83105976-83105995 Msa0381130:intron 50.0%
AGAGATCCAGTCCTCCAAGA+GGG - chr3_1:83106265-83106284 None:intergenic 50.0%
TGCAACAGCAGTGCTAGTGA+AGG - chr3_1:83106318-83106337 None:intergenic 50.0%
TCTTGCCTCAAGACCTTGCT+TGG - chr3_1:83106372-83106391 None:intergenic 50.0%
AAATGGATGAGGCGGCTTCA+AGG + chr3_1:83106428-83106447 Msa0381130:CDS 50.0%
AATGGATGAGGCGGCTTCAA+GGG + chr3_1:83106429-83106448 Msa0381130:CDS 50.0%
TGGATGTGGGGAGTTGTGGA+GGG - chr3_1:83104583-83104602 None:intergenic 55.0%
ATGGATGTGGGGAGTTGTGG+AGG - chr3_1:83104584-83104603 None:intergenic 55.0%
! CGGCGTTGGAAATGGATGTG+GGG - chr3_1:83104595-83104614 None:intergenic 55.0%
! GACGGCGTTGGAAATGGATG+TGG - chr3_1:83104597-83104616 None:intergenic 55.0%
ACTACTGGTGATTCCGTGGC+TGG + chr3_1:83104875-83104894 Msa0381130:CDS 55.0%
!! TGATTCCGTGGCTGGCTTAG+TGG + chr3_1:83104883-83104902 Msa0381130:CDS 55.0%
! GCTGGCTTAGTGGTGGCTAA+TGG + chr3_1:83104893-83104912 Msa0381130:CDS 55.0%
ACAACACCTTGCTCGTTGCC+AGG + chr3_1:83104939-83104958 Msa0381130:CDS 55.0%
AACAAGCCTGGCAACGAGCA+AGG - chr3_1:83104948-83104967 None:intergenic 55.0%
!! AGGAGGAGCGTTAGGAAACC+AGG - chr3_1:83104975-83104994 None:intergenic 55.0%
TGACCTGAGAGGAGCAACGA+TGG - chr3_1:83104999-83105018 None:intergenic 55.0%
! CAAGGGCGTGGGGTTATTAG+TGG + chr3_1:83105158-83105177 Msa0381130:intron 55.0%
CACCTCCCATTGGAATTCCC+TGG - chr3_1:83105736-83105755 None:intergenic 55.0%
TGCAGGCCACTATCTGACCT+AGG + chr3_1:83105931-83105950 Msa0381130:intron 55.0%
GCAGGCCACTATCTGACCTA+GGG + chr3_1:83105932-83105951 Msa0381130:intron 55.0%
AGATCCAGTCCTCCAAGAGG+GGG - chr3_1:83106263-83106282 None:intergenic 55.0%
GAGATCCAGTCCTCCAAGAG+GGG - chr3_1:83106264-83106283 None:intergenic 55.0%
GAGAGATCCAGTCCTCCAAG+AGG - chr3_1:83106266-83106285 None:intergenic 55.0%
CTGTGACTGGAAGCTCAGCA+GGG - chr3_1:83106343-83106362 None:intergenic 55.0%
TCTGTGACTGGAAGCTCAGC+AGG - chr3_1:83106344-83106363 None:intergenic 55.0%
ATGAGGCGGCTTCAAGGGAT+CGG + chr3_1:83106434-83106453 Msa0381130:CDS 55.0%
TGGATGTGGGGAGTTGTGGA+GGG - chr3_1:83104583-83104602 None:intergenic 55.0%
ATGGATGTGGGGAGTTGTGG+AGG - chr3_1:83104584-83104603 None:intergenic 55.0%
! CGGCGTTGGAAATGGATGTG+GGG - chr3_1:83104595-83104614 None:intergenic 55.0%
! GACGGCGTTGGAAATGGATG+TGG - chr3_1:83104597-83104616 None:intergenic 55.0%
ACTACTGGTGATTCCGTGGC+TGG + chr3_1:83104875-83104894 Msa0381130:CDS 55.0%
!! TGATTCCGTGGCTGGCTTAG+TGG + chr3_1:83104883-83104902 Msa0381130:CDS 55.0%
! GCTGGCTTAGTGGTGGCTAA+TGG + chr3_1:83104893-83104912 Msa0381130:CDS 55.0%
ACAACACCTTGCTCGTTGCC+AGG + chr3_1:83104939-83104958 Msa0381130:CDS 55.0%
AACAAGCCTGGCAACGAGCA+AGG - chr3_1:83104948-83104967 None:intergenic 55.0%
!! AGGAGGAGCGTTAGGAAACC+AGG - chr3_1:83104975-83104994 None:intergenic 55.0%
TGACCTGAGAGGAGCAACGA+TGG - chr3_1:83104999-83105018 None:intergenic 55.0%
! CAAGGGCGTGGGGTTATTAG+TGG + chr3_1:83105158-83105177 Msa0381130:intron 55.0%
CACCTCCCATTGGAATTCCC+TGG - chr3_1:83105736-83105755 None:intergenic 55.0%
TGCAGGCCACTATCTGACCT+AGG + chr3_1:83105931-83105950 Msa0381130:intron 55.0%
GCAGGCCACTATCTGACCTA+GGG + chr3_1:83105932-83105951 Msa0381130:intron 55.0%
AGATCCAGTCCTCCAAGAGG+GGG - chr3_1:83106263-83106282 None:intergenic 55.0%
GAGATCCAGTCCTCCAAGAG+GGG - chr3_1:83106264-83106283 None:intergenic 55.0%
GAGAGATCCAGTCCTCCAAG+AGG - chr3_1:83106266-83106285 None:intergenic 55.0%
CTGTGACTGGAAGCTCAGCA+GGG - chr3_1:83106343-83106362 None:intergenic 55.0%
TCTGTGACTGGAAGCTCAGC+AGG - chr3_1:83106344-83106363 None:intergenic 55.0%
ATGAGGCGGCTTCAAGGGAT+CGG + chr3_1:83106434-83106453 Msa0381130:CDS 55.0%
GGATGTGGGGAGTTGTGGAG+GGG - chr3_1:83104582-83104601 None:intergenic 60.0%
!! TTCCGTGGCTGGCTTAGTGG+TGG + chr3_1:83104886-83104905 Msa0381130:CDS 60.0%
AGCCACCACTAAGCCAGCCA+CGG - chr3_1:83104891-83104910 None:intergenic 60.0%
!! ACGATGGCAGGAGGAGCGTT+AGG - chr3_1:83104983-83105002 None:intergenic 60.0%
AGAGGAGCAACGATGGCAGG+AGG - chr3_1:83104992-83105011 None:intergenic 60.0%
CTGAGAGGAGCAACGATGGC+AGG - chr3_1:83104995-83105014 None:intergenic 60.0%
CTGCCATCGTTGCTCCTCTC+AGG + chr3_1:83104993-83105012 Msa0381130:CDS 60.0%
GGCCAGGGAATTCCAATGGG+AGG + chr3_1:83105731-83105750 Msa0381130:intron 60.0%
CAAGAGGGGGGATAAGCCCA+CGG - chr3_1:83106250-83106269 None:intergenic 60.0%
TATCCCCCCTCTTGGAGGAC+TGG + chr3_1:83106256-83106275 Msa0381130:intron 60.0%
GATCCAGTCCTCCAAGAGGG+GGG - chr3_1:83106262-83106281 None:intergenic 60.0%
TGAGGCGGCTTCAAGGGATC+GGG + chr3_1:83106435-83106454 Msa0381130:CDS 60.0%
GGATGTGGGGAGTTGTGGAG+GGG - chr3_1:83104582-83104601 None:intergenic 60.0%
!! TTCCGTGGCTGGCTTAGTGG+TGG + chr3_1:83104886-83104905 Msa0381130:CDS 60.0%
AGCCACCACTAAGCCAGCCA+CGG - chr3_1:83104891-83104910 None:intergenic 60.0%
!! ACGATGGCAGGAGGAGCGTT+AGG - chr3_1:83104983-83105002 None:intergenic 60.0%
AGAGGAGCAACGATGGCAGG+AGG - chr3_1:83104992-83105011 None:intergenic 60.0%
CTGAGAGGAGCAACGATGGC+AGG - chr3_1:83104995-83105014 None:intergenic 60.0%
CTGCCATCGTTGCTCCTCTC+AGG + chr3_1:83104993-83105012 Msa0381130:CDS 60.0%
GGCCAGGGAATTCCAATGGG+AGG + chr3_1:83105731-83105750 Msa0381130:intron 60.0%
CAAGAGGGGGGATAAGCCCA+CGG - chr3_1:83106250-83106269 None:intergenic 60.0%
TATCCCCCCTCTTGGAGGAC+TGG + chr3_1:83106256-83106275 Msa0381130:intron 60.0%
GATCCAGTCCTCCAAGAGGG+GGG - chr3_1:83106262-83106281 None:intergenic 60.0%
TGAGGCGGCTTCAAGGGATC+GGG + chr3_1:83106435-83106454 Msa0381130:CDS 60.0%
CGTGGGCTTATCCCCCCTCT+TGG + chr3_1:83106248-83106267 Msa0381130:intron 65.0%
GGGCTTATCCCCCCTCTTGG+AGG + chr3_1:83106251-83106270 Msa0381130:intron 65.0%
CGTGGGCTTATCCCCCCTCT+TGG + chr3_1:83106248-83106267 Msa0381130:intron 65.0%
GGGCTTATCCCCCCTCTTGG+AGG + chr3_1:83106251-83106270 Msa0381130:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 83104452 83106484 83104452 ID=Msa0381130;Name=Msa0381130
chr3_1 mRNA 83104452 83106484 83104452 ID=Msa0381130-mRNA-1;Parent=Msa0381130;Name=Msa0381130-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|1|1|1|3|0|210
chr3_1 exon 83104452 83104705 83104452 ID=Msa0381130-mRNA-1:exon:21322;Parent=Msa0381130-mRNA-1
chr3_1 exon 83104796 83105014 83104796 ID=Msa0381130-mRNA-1:exon:21323;Parent=Msa0381130-mRNA-1
chr3_1 exon 83106325 83106484 83106325 ID=Msa0381130-mRNA-1:exon:21324;Parent=Msa0381130-mRNA-1
chr3_1 CDS 83104452 83104705 83104452 ID=Msa0381130-mRNA-1:cds;Parent=Msa0381130-mRNA-1
chr3_1 CDS 83104796 83105014 83104796 ID=Msa0381130-mRNA-1:cds;Parent=Msa0381130-mRNA-1
chr3_1 CDS 83106325 83106484 83106325 ID=Msa0381130-mRNA-1:cds;Parent=Msa0381130-mRNA-1
Gene Sequence

>Msa0381130

ATGCTTAAAAAAATATGCGACTCGTCCACCACTGATACAGAAACGAAGAAGAACGTCTCGTTTTGTTGGGGTAATTCTCAATCCCCATTAGCATTCCCCTTTCTCAAATCCCCCATCTCCAATTTCTCCCCTCCACAACTCCCCACATCCATTTCCAACGCCGTCGATAATTGTTCCAAACTTCTCCACTCCTTAGCTTCTCAAAACCCCTTCTTAAACAAACTACTCTCTCTTTCCTCTCAATTCCATAACACATTCGGTGCAGTAACTACAGGAACAGTAGTAGGTTTACTCTTAGTGGACCAATTTGGGACCAATTTGTATGCTTCGTCTACTACTGGTGATTCCGTGGCTGGCTTAGTGGTGGCTAATGGACTTAATAATTTTTTGAGTCTTTACAACACCTTGCTCGTTGCCAGGCTTGTTCTTACCTGGTTTCCTAACGCTCCTCCTGCCATCGTTGCTCCTCTCAGCACTGCTGTTGCACTCCCTGCTGAGCTTCCAGTCACAGAACAATCCAAGCAAGGTCTTGAGGCAAGATTACAACAACCTACCGATGTTACTTCTTCACAGAACAAATGGATGAGGCGGCTTCAAGGGATCGGGTCAAAGACCTCCACTCCTACAAATTAG

Protein sequence

>Msa0381130

MLKKICDSSTTDTETKKNVSFCWGNSQSPLAFPFLKSPISNFSPPQLPTSISNAVDNCSKLLHSLASQNPFLNKLLSLSSQFHNTFGAVTTGTVVGLLLVDQFGTNLYASSTTGDSVAGLVVANGLNNFLSLYNTLLVARLVLTWFPNAPPAIVAPLSTAVALPAELPVTEQSKQGLEARLQQPTDVTSSQNKWMRRLQGIGSKTSTPTN*