AlfalfaGEDB | Msa0604690

M. sativa cultivar zhongmu-4 / Msa0604690

KEGG: -
GO: -
PFAM: PF01276.23

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0604690	QCD88483.1	70.573	1135	265	7	18	1151	30	1096	0.0	1594
Msa0604690	QCD88483.1	78.476	525	110	1	629	1153	64	585	0.0	847

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0604690	sp\|P21885\|SPEA_BACSU	36.701	485	295	4	112	592	7	483	1.50e-97	322
Msa0604690	sp\|P21885\|SPEA_BACSU	36.008	486	299	4	671	1152	7	484	3.80e-95	315

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0604690	A0A4D6LIV7	70.573	1135	265	7	18	1151	30	1096	0.0	1594
Msa0604690	A0A4D6LIV7	78.476	525	110	1	629	1153	64	585	0.0	847

Showing 1 to 2 of 2 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0604690	0.821281	4.388404e-53	-8.615850e-47
Msa0000610	Msa0604690	0.846705	1.836120e-59	-8.615850e-47
Msa0000800	Msa0604690	-0.821153	4.697196e-53	-8.615850e-47
Msa0001510	Msa0604690	0.856275	3.592740e-62	-8.615850e-47
Msa0001540	Msa0604690	0.822434	2.373617e-53	-8.615850e-47
Msa0002110	Msa0604690	0.811927	5.481402e-51	-8.615850e-47
Msa0002690	Msa0604690	0.856426	3.244037e-62	-8.615850e-47
Msa0002700	Msa0604690	0.857529	1.534112e-62	-8.615850e-47
Msa0003340	Msa0604690	0.861621	9.021080e-64	-8.615850e-47
Msa0003370	Msa0604690	0.811653	6.286670e-51	-8.615850e-47

Showing 1 to 10 of 1,776 entries

Previous1 2 3 4 5…178Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0604690	MtrunA17_Chr4g0033871	91.508	577	26	2	18	594	17	570	1069
Msa0604690	MtrunA17_Chr4g0033871	85.333	525	77	0	629	1153	46	570	913
Msa0604690	MtrunA17_Chr4g0033891	96.190	525	20	0	629	1153	26	550	1031
Msa0604690	MtrunA17_Chr4g0033891	85.579	527	76	0	68	594	24	550	921
Msa0604690	MtrunA17_Chr4g0033911	95.627	526	23	0	628	1153	227	752	1026
Msa0604690	MtrunA17_Chr4g0033911	85.199	527	78	0	68	594	226	752	916

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 293 sgRNAs with CRISPR-Local

Find 669 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAACAGTAAGCCGCAA+TGG	0.579462	4_2:-50316060	None:intergenic
AACACTGATGAAGATAAGAT+TGG	0.455943	4_2:+50319157	Msa0604690:CDS
AACAGCCGGTGACAGTTATT+AGG	0.377643	4_2:+50322784	Msa0604690:three_prime_UTR
AACAGTACAGTCTACTCACA+AGG	0.650174	4_2:+50315759	Msa0604690:CDS
AACTGTACAGTCTACTCACA+AGG	0.639033	4_2:+50321978	Msa0604690:CDS
AACTTAATGAAAAGCATGAA+TGG	0.526298	4_2:+50313240	None:intergenic
AAGAAATTCTCCTGGTGAAC+AGG	0.381246	4_2:-50315139	None:intergenic
AAGACATGGTTTCTTGTCGG+AGG	0.641334	4_2:+50315081	Msa0604690:CDS
AAGCAAATGAAATCTTATGC+AGG	0.499702	4_2:+50322328	Msa0604690:CDS
AAGCAGGTAACTAGGACTTG+TGG	0.664545	4_2:-50315875	None:intergenic

Showing 1 to 10 of 293 entries

Previous1 2 3 4 5…30Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TCAATCCCAAAAATCCAAAA+CGG	+	chr4_2:50313330-50313349	Msa0604690:CDS	30.0%
GTTAGCACTTACTGAAAAAT+GGG	-	chr4_2:50313366-50313385	None:intergenic	30.0%
GTCCTTACAAATTGAATTTC+AGG	+	chr4_2:50313458-50313477	Msa0604690:CDS	30.0%
GTCCTGAAATTCAATTTGTA+AGG	-	chr4_2:50313463-50313482	None:intergenic	30.0%
TTATTGGTCAAAAACAATGG+AGG	+	chr4_2:50313641-50313660	Msa0604690:intron	30.0%
TATTGGTCAAAAACAATGGA+GGG	+	chr4_2:50313642-50313661	Msa0604690:intron	30.0%
GTTCAAAAGTTGTCAAAAAG+TGG	+	chr4_2:50313718-50313737	Msa0604690:intron	30.0%
TTTCAAATTATCATCGGTGT+TGG	-	chr4_2:50314089-50314108	None:intergenic	30.0%
GTATAATACACCAAAATGGT+CGG	-	chr4_2:50314470-50314489	None:intergenic	30.0%
TCTGTTTGTGCTTCTAATAT+GGG	-	chr4_2:50315036-50315055	None:intergenic	30.0%

Showing 1 to 10 of 669 entries

Previous1 2 3 4 5…67Next

Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	50313247	50322951	50313247	ID=Msa0604690;Name=Msa0604690
chr4_2	mRNA	50313247	50322951	50313247	ID=Msa0604690-mRNA-1;Parent=Msa0604690;Name=Msa0604690-mRNA-1;_AED=0.10;_eAED=0.12;_QI=34\|0.42\|0.62\|0.87\|1\|1\|8\|172\|1153
chr4_2	exon	50313247	50313373	50313247	ID=Msa0604690-mRNA-1:exon:11855;Parent=Msa0604690-mRNA-1
chr4_2	exon	50313454	50313513	50313454	ID=Msa0604690-mRNA-1:exon:11856;Parent=Msa0604690-mRNA-1
chr4_2	exon	50313791	50313844	50313791	ID=Msa0604690-mRNA-1:exon:11857;Parent=Msa0604690-mRNA-1
chr4_2	exon	50314730	50315287	50314730	ID=Msa0604690-mRNA-1:exon:11858;Parent=Msa0604690-mRNA-1
chr4_2	exon	50315541	50316554	50315541	ID=Msa0604690-mRNA-1:exon:11859;Parent=Msa0604690-mRNA-1
chr4_2	exon	50319148	50319252	50319148	ID=Msa0604690-mRNA-1:exon:11860;Parent=Msa0604690-mRNA-1
chr4_2	exon	50320861	50321418	50320861	ID=Msa0604690-mRNA-1:exon:11861;Parent=Msa0604690-mRNA-1
chr4_2	exon	50321760	50322951	50321760	ID=Msa0604690-mRNA-1:exon:11862;Parent=Msa0604690-mRNA-1
chr4_2	five_prime_UTR	50313247	50313280	50313247	ID=Msa0604690-mRNA-1:five_prime_utr;Parent=Msa0604690-mRNA-1
chr4_2	CDS	50313281	50313373	50313281	ID=Msa0604690-mRNA-1:cds;Parent=Msa0604690-mRNA-1
chr4_2	CDS	50313454	50313513	50313454	ID=Msa0604690-mRNA-1:cds;Parent=Msa0604690-mRNA-1
chr4_2	CDS	50313791	50313844	50313791	ID=Msa0604690-mRNA-1:cds;Parent=Msa0604690-mRNA-1
chr4_2	CDS	50314730	50315287	50314730	ID=Msa0604690-mRNA-1:cds;Parent=Msa0604690-mRNA-1
chr4_2	CDS	50315541	50316554	50315541	ID=Msa0604690-mRNA-1:cds;Parent=Msa0604690-mRNA-1
chr4_2	CDS	50319148	50319252	50319148	ID=Msa0604690-mRNA-1:cds;Parent=Msa0604690-mRNA-1
chr4_2	CDS	50320861	50321418	50320861	ID=Msa0604690-mRNA-1:cds;Parent=Msa0604690-mRNA-1
chr4_2	CDS	50321760	50322779	50321760	ID=Msa0604690-mRNA-1:cds;Parent=Msa0604690-mRNA-1
chr4_2	three_prime_UTR	50322780	50322951	50322780	ID=Msa0604690-mRNA-1:three_prime_utr;Parent=Msa0604690-mRNA-1

Gene Sequence

>Msa0604690

ATGGTGTATATTTCGTTCTCACTATTACTTCCACTCTCGTCGTCCCCTTTCAATCCCAAAAATCCAAAACGGTTTTCACCTTCCCATTTTTCAGGACGTCCTTACAAATTGAATTTCAGGACTTCATTGACGATTCCGTCTTATTCCTCTCAGTTGGGCTGCTCTGGTGGTATTGACTTGGGACCTGGGAGTGTGCTCCTACTCGAGCAAAGAAGCATTGCACTGCCAGAATATGGGAAATACGAGAGCGTTGGGACAGTGAGCACTGAATCAATCACAAACAACCCCAATGAATGCAGCAGTTCACCAGAGCTTCAGCAGAGTGGCCTACCTCCTTTAGTTAGTGCATTGAAAGCCTCAGCTGAAGAAAATGCTGCCACTTTTCACTTTCCTGGACATAACAGAGGCCATGCCGCTCCTGCCTCAATGACTCGACTCATTGGAAGAAGACCATATGCTCATGATTTACCCGAGCTTCCTGAACTTGACAACCTCTTCTGTCCCCAAGGACCCATATTAGAAGCACAAACAGAAGCAGCCAAATTGTTTGGATCATCAAAGACATGGTTTCTTGTCGGAGGTACTACTTGTGGGATCCAGGCAGCAATAATGGCAACCTGTTCACCAGGAGAATTTCTTATTCTTCCTCGAAATTGTCATTTATCGGCTATATCGGCCATGGTATTATCCGGTGCAGTGCCTAAGTACATTGTTCCTGACTATAAAAATGATTGGGACATCGCTGGTGGTGTCACTCCATTACAGGTATTGAGTGCTATCCAGGAACTCGAATTGGAAGGAAAAAAAGCAGCAGCAGTTTTCATCACTTCACCTACTTATCATGGTATTTGCAGTAACTTGAGCGACATTTCTGAGTTGTGTCATTACCGTAAAATTCCTCTGATTGTTGATGAAGCTCACGGTGCACATCTAGGATTTCATTCTGAACTGCCTAGCTCAGCCCTCCAGCAAGGGGCTGATCTAACAGTACAGTCTACTCACAAGGTTCTTTGCTCTCTTACTCAGTCATCTATGCTGCACATGTCAGGTGACATTGTAGATAAAGAAAAAATATCTAGGTGTCTCCAAACTCTCCAAACCACAAGTCCTAGTTACCTGCTTTTGGCATCCCTAGATGCTGCTAGATCTCAACTTAGTGAAAGCCCTGATACTGTATTCAACCAAGCGATTAAATTAGCAAATGAAGCAAAGTGCTCTCTTAAACAATTCCCTGGCATCTCAGTGCTTGAGAATTCAAGCTTTCCGACCATTCCTGCAATTGATCCATTGCGGCTTACTGTTGGTTTTTGGGAGCTTGGGTTATCAGGTTACGAAGCGGATGAAATCTTATATCGGGATTTCGGAATTGTTTGTGAACTCGTTGGGAATAAATCTATCACTTATGCACTTAATCTTGGAACTTGTAGGGACCATGTCCAAAGGCTTTTATCGGGAATAAAGCATCTAGCTGCAACATATCCTTCCATTCAGCAACCTAAAGACGGAGTACTTACTGAACGCGCACCCTTTGATGATATAATCACGAGCTTGACCCCCAGAGATGCATTTTTTGCAAGTAAAAGAAAAGTAACGATAAAGGAGAGCATTGGTAAGGTTTCGGGGGAGCTTATTTGTCCATATCCTCCAGGTATACCTGTATTGATCCCCGGTGAGGTTATTACTGAGAGAGCCGTCAATTATCTACTCCATGTAAGAAGTGAAGGTGCTGATATTAGTGGAGCATCTGATCCCTTACTTTCTTCTATAGTTGTCTGCGATTTAGTTGGTAACACTGATGAAGATAAGATTGGTTTAGCCTTTTACGGAAAACAAGATCCAAAGCAGGAAGCTGTGGAAGAAGAAGAAGAAGAAGAAGAAAATGGTGAAAAAAGCACTGCACTACAAGAATATGGGCAAGAAGATAGCATTGGGACAGTGAACACTGCATCAATCCCAAACAACGCCGTTTTGTTCAGCAATTCACCAGAGCTTCAGCAGAGTGGCCTACCTCCTCTAGTCAGTGCATTGAAAGCCTCAGCTGAAGAAAATGCTGCCAGTTTTCACTTTCCTGGACACAACAGAGGCCATGCCGCTCCTTCTTCGTTGACTCAACTCATTGGAATAAGACCATATGCTCATGATTTGTCTAGCATTCCAGAACTTGACAACCTCTTTTGTCCCCAAGGGCCCATATTAGAAGCACAAAGAGAAGCATCCAAACTGTTTGGATCATCAGAGACATGGTTTCTTGTCAACGGTACTACTTGTGGAGTCCAGGCAGCAATCATGGCAACCTGTTCACCGGGAGGATATTTGATTCTTCCTAGGAATTCTCATTTATCAGCTATATCTGCCATGGTTTTATCTGGTGCAGTGCCTAAGTACATTATTCCCGACTATAAAAATGATTGGGACATCGCTGGTGGCGTCACTCCATTACAGGTATTGAATGCAATCCAGGAACTAGAATCTGAAGGAAAGAAAGCAGCAGCAGTTTTCATCACTTCACCTACTTATCATGGTGTTTGCAGTAACTTGAGTGACATTTCTGCATTGTGTCATTCTCGTAAAATTCCTTTGATTGTTGATGAAGCTCATGGCGCACATCTAGGATTACATCCTGAACTGCCTAGCTCAGCCCTCCAGCAAGGGGCTGATCTAACTGTACAGTCTACTCACAAGGTTCTTTCCTCTCTTACTCAGTCGTCTATGCTGCATATGTCGGGCGACATTGTAGAAAAGGAAAAAATATCTAGGTGTCTTCAAACACTCCAAAGCACAAGTCCTAGTTACCTGCTTTTGGCATCCCTAGATGCTGCTAGAGCTCAACTTAGTGAAAGCCCTGCTATTGTATTCAAACAAGCCATTGAATTAGCAAATGAAGCAAAGTTTTTGCTAAAAAGAATCCCTGGCGTCTCAGTGCTTGAGAATGCAAGCTTTCCAAATTTTCCCGCATTTGATCCATTCCGGCTTACTGTAGGCTTTTGGGAGCTTGGTTTATCAGGTTACCAAGCAAATGAAATCTTATGCAGGGATTTTGGAATCATCCGTGAGCTTGTTGGGTATAAATCTATCACTTATGTACTTAATCTTGGAACTTGTAGAGACCATGTCCAAAGGCTTTTATCGGGAGCAAAGCATTTAGCTGCAGTATATTCTTCCATTCAGCAACGTAAAGACAGAGCACTTACTGATTATGCACCCTTTGACGATATAATCATGAATTTGACCCCTAGAGATGCATTTTTTGCAAGTAAAAGAAAGGTAACGGTGAAGGAGAGCATCGGTAAGGTTTCGGGGGAGCTTATATGTCCATACCCTCCCGGCATACCGGTATTGATCCCAGGCGAGGTTATTACTGAGAAAGCAGTCGATTATCTACTCCATGTAAGAAGTGAAGGTGCTGATATTAGTGGAGCATCTGATCCCTTACTTTCTTCTATAGTTGTCTGCAATGTATAG

Protein sequence

>Msa0604690

MVYISFSLLLPLSSSPFNPKNPKRFSPSHFSGRPYKLNFRTSLTIPSYSSQLGCSGGIDLGPGSVLLLEQRSIALPEYGKYESVGTVSTESITNNPNECSSSPELQQSGLPPLVSALKASAEENAATFHFPGHNRGHAAPASMTRLIGRRPYAHDLPELPELDNLFCPQGPILEAQTEAAKLFGSSKTWFLVGGTTCGIQAAIMATCSPGEFLILPRNCHLSAISAMVLSGAVPKYIVPDYKNDWDIAGGVTPLQVLSAIQELELEGKKAAAVFITSPTYHGICSNLSDISELCHYRKIPLIVDEAHGAHLGFHSELPSSALQQGADLTVQSTHKVLCSLTQSSMLHMSGDIVDKEKISRCLQTLQTTSPSYLLLASLDAARSQLSESPDTVFNQAIKLANEAKCSLKQFPGISVLENSSFPTIPAIDPLRLTVGFWELGLSGYEADEILYRDFGIVCELVGNKSITYALNLGTCRDHVQRLLSGIKHLAATYPSIQQPKDGVLTERAPFDDIITSLTPRDAFFASKRKVTIKESIGKVSGELICPYPPGIPVLIPGEVITERAVNYLLHVRSEGADISGASDPLLSSIVVCDLVGNTDEDKIGLAFYGKQDPKQEAVEEEEEEEENGEKSTALQEYGQEDSIGTVNTASIPNNAVLFSNSPELQQSGLPPLVSALKASAEENAASFHFPGHNRGHAAPSSLTQLIGIRPYAHDLSSIPELDNLFCPQGPILEAQREASKLFGSSETWFLVNGTTCGVQAAIMATCSPGGYLILPRNSHLSAISAMVLSGAVPKYIIPDYKNDWDIAGGVTPLQVLNAIQELESEGKKAAAVFITSPTYHGVCSNLSDISALCHSRKIPLIVDEAHGAHLGLHPELPSSALQQGADLTVQSTHKVLSSLTQSSMLHMSGDIVEKEKISRCLQTLQSTSPSYLLLASLDAARAQLSESPAIVFKQAIELANEAKFLLKRIPGVSVLENASFPNFPAFDPFRLTVGFWELGLSGYQANEILCRDFGIIRELVGYKSITYVLNLGTCRDHVQRLLSGAKHLAAVYSSIQQRKDRALTDYAPFDDIIMNLTPRDAFFASKRKVTVKESIGKVSGELICPYPPGIPVLIPGEVITEKAVDYLLHVRSEGADISGASDPLLSSIVVCNV*