Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006820 | XP_003621177.1 | 95.276 | 254 | 12 | 0 | 1 | 254 | 1 | 254 | 1.17e-170 | 481 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006820 | sp|Q9LFD5|BPA1_ARATH | 33.603 | 247 | 128 | 7 | 9 | 251 | 9 | 223 | 8.32e-36 | 131 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006820 | G7KZY3 | 95.276 | 254 | 12 | 0 | 1 | 254 | 1 | 254 | 5.61e-171 | 481 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003340 | Msa1006820 | 0.801238 | 9.896412e-49 | -8.615850e-47 |
| Msa0011910 | Msa1006820 | 0.802605 | 5.181751e-49 | -8.615850e-47 |
| Msa0016380 | Msa1006820 | 0.800026 | 1.748109e-48 | -8.615850e-47 |
| Msa0022960 | Msa1006820 | 0.818983 | 1.474182e-52 | -8.615850e-47 |
| Msa0037300 | Msa1006820 | 0.802633 | 5.113281e-49 | -8.615850e-47 |
| Msa0042210 | Msa1006820 | 0.810865 | 9.320109e-51 | -8.615850e-47 |
| Msa0064310 | Msa1006820 | 0.848686 | 5.234113e-60 | -8.615850e-47 |
| Msa0069230 | Msa1006820 | 0.818919 | 1.524406e-52 | -8.615850e-47 |
| Msa0076590 | Msa1006820 | 0.808066 | 3.716649e-50 | -8.615850e-47 |
| Msa0076990 | Msa1006820 | 0.805414 | 1.350487e-49 | -8.615850e-47 |
| Msa0078080 | Msa1006820 | 0.801221 | 9.972837e-49 | -8.615850e-47 |
| Msa0086620 | Msa1006820 | 0.810481 | 1.128422e-50 | -8.615850e-47 |
| Msa0093360 | Msa1006820 | 0.803243 | 3.826442e-49 | -8.615850e-47 |
| Msa0606260 | Msa1006820 | 0.802065 | 6.693481e-49 | -8.615850e-47 |
| Msa0619450 | Msa1006820 | 0.803044 | 4.205665e-49 | -8.615850e-47 |
| Msa0619530 | Msa1006820 | 0.815791 | 7.715253e-52 | -8.615850e-47 |
| Msa0623350 | Msa1006820 | 0.814222 | 1.719646e-51 | -8.615850e-47 |
| Msa0640780 | Msa1006820 | 0.814740 | 1.320628e-51 | -8.615850e-47 |
| Msa0643330 | Msa1006820 | 0.805133 | 1.546237e-49 | -8.615850e-47 |
| Msa0651120 | Msa1006820 | 0.808501 | 3.002796e-50 | -8.615850e-47 |
| Msa0653370 | Msa1006820 | 0.813057 | 3.103327e-51 | -8.615850e-47 |
| Msa0659580 | Msa1006820 | 0.803943 | 2.737870e-49 | -8.615850e-47 |
| Msa0681100 | Msa1006820 | 0.856487 | 3.113264e-62 | -8.615850e-47 |
| Msa0695930 | Msa1006820 | 0.827056 | 1.930818e-54 | -8.615850e-47 |
| Msa0699200 | Msa1006820 | 0.826581 | 2.507284e-54 | -8.615850e-47 |
| Msa0704790 | Msa1006820 | 0.800902 | 1.159008e-48 | -8.615850e-47 |
| Msa0719330 | Msa1006820 | 0.825622 | 4.240759e-54 | -8.615850e-47 |
| Msa0724120 | Msa1006820 | 0.812753 | 3.616793e-51 | -8.615850e-47 |
| Msa0751540 | Msa1006820 | 0.808775 | 2.623500e-50 | -8.615850e-47 |
| Msa0768240 | Msa1006820 | 0.809311 | 2.014646e-50 | -8.615850e-47 |
| Msa0796840 | Msa1006820 | 0.809588 | 1.756568e-50 | -8.615850e-47 |
| Msa0826940 | Msa1006820 | 0.824954 | 6.100992e-54 | -8.615850e-47 |
| Msa0124460 | Msa1006820 | 0.805762 | 1.141554e-49 | -8.615850e-47 |
| Msa0159240 | Msa1006820 | 0.801896 | 7.253640e-49 | -8.615850e-47 |
| Msa0162170 | Msa1006820 | 0.801487 | 8.798511e-49 | -8.615850e-47 |
| Msa0164580 | Msa1006820 | 0.808314 | 3.290979e-50 | -8.615850e-47 |
| Msa0165820 | Msa1006820 | 0.828285 | 9.787030e-55 | -8.615850e-47 |
| Msa0170550 | Msa1006820 | 0.802844 | 4.625414e-49 | -8.615850e-47 |
| Msa0172820 | Msa1006820 | 0.801221 | 9.973055e-49 | -8.615850e-47 |
| Msa0177180 | Msa1006820 | 0.800538 | 1.375202e-48 | -8.615850e-47 |
| Msa0178020 | Msa1006820 | 0.804126 | 2.508236e-49 | -8.615850e-47 |
| Msa0181560 | Msa1006820 | 0.802238 | 6.169466e-49 | -8.615850e-47 |
| Msa0184900 | Msa1006820 | 0.807709 | 4.428247e-50 | -8.615850e-47 |
| Msa0185540 | Msa1006820 | 0.805302 | 1.425720e-49 | -8.615850e-47 |
| Msa0209370 | Msa1006820 | 0.808497 | 3.008912e-50 | -8.615850e-47 |
| Msa0209590 | Msa1006820 | 0.816748 | 4.713461e-52 | -8.615850e-47 |
| Msa0224180 | Msa1006820 | 0.808257 | 3.384250e-50 | -8.615850e-47 |
| Msa0367600 | Msa1006820 | 0.809249 | 2.077330e-50 | -8.615850e-47 |
| Msa0379590 | Msa1006820 | 0.813187 | 2.906480e-51 | -8.615850e-47 |
| Msa0379890 | Msa1006820 | 0.815834 | 7.546989e-52 | -8.615850e-47 |
| Msa0382060 | Msa1006820 | 0.805029 | 1.625757e-49 | -8.615850e-47 |
| Msa0390760 | Msa1006820 | 0.808797 | 2.595703e-50 | -8.615850e-47 |
| Msa0408830 | Msa1006820 | 0.861191 | 1.220092e-63 | -8.615850e-47 |
| Msa0415210 | Msa1006820 | 0.808544 | 2.940331e-50 | -8.615850e-47 |
| Msa0416430 | Msa1006820 | 0.814328 | 1.629547e-51 | -8.615850e-47 |
| Msa0418790 | Msa1006820 | 0.830028 | 3.697807e-55 | -8.615850e-47 |
| Msa0428280 | Msa1006820 | 0.818578 | 1.822230e-52 | -8.615850e-47 |
| Msa0464730 | Msa1006820 | 0.876930 | 9.433704e-69 | -8.615850e-47 |
| Msa0475700 | Msa1006820 | 0.807350 | 5.276275e-50 | -8.615850e-47 |
| Msa0476140 | Msa1006820 | 0.824856 | 6.434055e-54 | -8.615850e-47 |
| Msa1006820 | Msa1020160 | 0.808829 | 2.554659e-50 | -8.615850e-47 |
| Msa1006820 | Msa1033460 | 0.802150 | 6.430705e-49 | -8.615850e-47 |
| Msa1006820 | Msa1036370 | 0.801802 | 7.582714e-49 | -8.615850e-47 |
| Msa1006820 | Msa1044050 | 0.820292 | 7.409892e-53 | -8.615850e-47 |
| Msa1006820 | Msa1076530 | 0.816941 | 4.265517e-52 | -8.615850e-47 |
| Msa1006820 | Msa1106730 | 0.830099 | 3.554152e-55 | -8.615850e-47 |
| Msa1006820 | Msa1121920 | 0.804736 | 1.872323e-49 | -8.615850e-47 |
| Msa1006820 | Msa1123260 | 0.800011 | 1.759998e-48 | -8.615850e-47 |
| Msa1006820 | Msa1127530 | 0.812420 | 4.277136e-51 | -8.615850e-47 |
| Msa1006820 | Msa1128200 | 0.803192 | 3.919425e-49 | -8.615850e-47 |
| Msa1006820 | Msa1130150 | 0.803875 | 2.828432e-49 | -8.615850e-47 |
| Msa1006820 | Msa1131300 | 0.800568 | 1.355828e-48 | -8.615850e-47 |
| Msa1006820 | Msa1135910 | 0.867015 | 1.868074e-65 | -8.615850e-47 |
| Msa1006820 | Msa1136770 | 0.828683 | 7.846264e-55 | -8.615850e-47 |
| Msa1006820 | Msa1156120 | 0.804565 | 2.032339e-49 | -8.615850e-47 |
| Msa1006820 | Msa1161060 | 0.808985 | 2.365807e-50 | -8.615850e-47 |
| Msa1006820 | Msa1161550 | 0.807137 | 5.852920e-50 | -8.615850e-47 |
| Msa1006820 | Msa1165330 | 0.815869 | 7.411028e-52 | -8.615850e-47 |
| Msa1006820 | Msa1190510 | 0.822216 | 2.667615e-53 | -8.615850e-47 |
| Msa1006820 | Msa1202220 | 0.823821 | 1.126801e-53 | -8.615850e-47 |
| Msa1006820 | Msa1223520 | 0.808821 | 2.564826e-50 | -8.615850e-47 |
| Msa1006820 | Msa1249740 | 0.808300 | 3.314401e-50 | -8.615850e-47 |
| Msa1006820 | Msa1255030 | 0.807784 | 4.268820e-50 | -8.615850e-47 |
| Msa1006820 | Msa1263600 | 0.803090 | 4.115838e-49 | -8.615850e-47 |
| Msa1006820 | Msa1263970 | 0.804212 | 2.407943e-49 | -8.615850e-47 |
| Msa1006820 | Msa1264670 | 0.800711 | 1.267801e-48 | -8.615850e-47 |
| Msa1006820 | Msa1270860 | 0.809896 | 1.508080e-50 | -8.615850e-47 |
| Msa1006820 | Msa1275500 | 0.800011 | 1.760516e-48 | -8.615850e-47 |
| Msa1006820 | Msa1286470 | 0.866899 | 2.034339e-65 | -8.615850e-47 |
| Msa1006820 | Msa1297490 | 0.834744 | 2.510421e-56 | -8.615850e-47 |
| Msa1006820 | Msa1320660 | 0.818682 | 1.725914e-52 | -8.615850e-47 |
| Msa1006820 | Msa1330080 | 0.808295 | 3.322483e-50 | -8.615850e-47 |
| Msa1006820 | Msa1335200 | 0.801388 | 9.217154e-49 | -8.615850e-47 |
| Msa1006820 | Msa1335210 | 0.815136 | 1.078983e-51 | -8.615850e-47 |
| Msa1006820 | Msa1337950 | 0.832471 | 9.277011e-56 | -8.615850e-47 |
| Msa1006820 | Msa1367690 | 0.803264 | 3.788268e-49 | -8.615850e-47 |
| Msa1006820 | Msa1369390 | 0.826111 | 3.244410e-54 | -8.615850e-47 |
| Msa1006820 | Msa1373570 | 0.803347 | 3.639790e-49 | -8.615850e-47 |
| Msa1006820 | Msa1375650 | 0.803550 | 3.304638e-49 | -8.615850e-47 |
| Msa1006820 | Msa1376510 | 0.804603 | 1.995542e-49 | -8.615850e-47 |
| Msa1006820 | Msa1392570 | 0.817408 | 3.349692e-52 | -8.615850e-47 |
| Msa1006820 | Msa1403840 | 0.802837 | 4.641391e-49 | -8.615850e-47 |
| Msa1006820 | Msa1410360 | 0.807287 | 5.440315e-50 | -8.615850e-47 |
| Msa1006820 | Msa1411390 | 0.804377 | 2.224241e-49 | -8.615850e-47 |
| Msa1006820 | Msa1415510 | 0.800592 | 1.340683e-48 | -8.615850e-47 |
| Msa1006820 | Msa1427600 | 0.802775 | 4.781028e-49 | -8.615850e-47 |
| Msa1006820 | Msa1432100 | 0.804671 | 1.931732e-49 | -8.615850e-47 |
| Msa1006820 | Msa1439000 | 0.812917 | 3.329780e-51 | -8.615850e-47 |
| Msa1006820 | Msa1439880 | 0.804190 | 2.432944e-49 | -8.615850e-47 |
| Msa1006820 | Msa1451200 | 0.812630 | 3.848942e-51 | -8.615850e-47 |
| Msa1006820 | Msa1452800 | 0.802990 | 4.315824e-49 | -8.615850e-47 |
| Msa1006820 | Msa1460340 | 0.817123 | 3.881549e-52 | -8.615850e-47 |
| Msa0256770 | Msa1006820 | 0.824015 | 1.014555e-53 | -8.615850e-47 |
| Msa0285510 | Msa1006820 | 0.802208 | 6.255020e-49 | -8.615850e-47 |
| Msa0292300 | Msa1006820 | 0.849091 | 4.038036e-60 | -8.615850e-47 |
| Msa0296490 | Msa1006820 | 0.820572 | 6.391666e-53 | -8.615850e-47 |
| Msa0317820 | Msa1006820 | 0.805274 | 1.444720e-49 | -8.615850e-47 |
| Msa0483090 | Msa1006820 | 0.816146 | 6.428001e-52 | -8.615850e-47 |
| Msa0486240 | Msa1006820 | 0.811655 | 6.281926e-51 | -8.615850e-47 |
| Msa0498250 | Msa1006820 | 0.821212 | 4.552642e-53 | -8.615850e-47 |
| Msa0506700 | Msa1006820 | 0.809110 | 2.224305e-50 | -8.615850e-47 |
| Msa0508620 | Msa1006820 | 0.805919 | 1.057953e-49 | -8.615850e-47 |
| Msa0508660 | Msa1006820 | 0.808735 | 2.676099e-50 | -8.615850e-47 |
| Msa0514630 | Msa1006820 | 0.818508 | 1.889916e-52 | -8.615850e-47 |
| Msa0519090 | Msa1006820 | 0.804010 | 2.652274e-49 | -8.615850e-47 |
| Msa0546020 | Msa1006820 | 0.839892 | 1.207443e-57 | -8.615850e-47 |
| Msa0554700 | Msa1006820 | 0.808488 | 3.022454e-50 | -8.615850e-47 |
| Msa0562040 | Msa1006820 | 0.810992 | 8.746780e-51 | -8.615850e-47 |
| Msa0584250 | Msa1006820 | 0.822284 | 2.572420e-53 | -8.615850e-47 |
| Msa0600940 | Msa1006820 | 0.802690 | 4.976642e-49 | -8.615850e-47 |
| Msa0872800 | Msa1006820 | 0.808284 | 3.340076e-50 | -8.615850e-47 |
| Msa0930150 | Msa1006820 | 0.842953 | 1.886809e-58 | -8.615850e-47 |
| Msa0968970 | Msa1006820 | 0.810957 | 8.902565e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006820 | MtrunA17_Chr7g0217131 | 95.276 | 254 | 12 | 0 | 1 | 254 | 1 | 254 | 1.08e-174 | 481 |
| Msa1006820 | MtrunA17_Chr5g0416421 | 49.600 | 250 | 111 | 4 | 5 | 251 | 7 | 244 | 1.32e-80 | 242 |
| Msa1006820 | MtrunA17_Chr1g0161591 | 33.865 | 251 | 125 | 4 | 7 | 249 | 33 | 250 | 2.73e-39 | 138 |
| Msa1006820 | MtrunA17_Chr7g0253621 | 33.878 | 245 | 144 | 5 | 7 | 245 | 5 | 237 | 8.06e-37 | 130 |
| Msa1006820 | MtrunA17_Chr8g0366351 | 33.333 | 255 | 132 | 5 | 7 | 252 | 5 | 230 | 4.92e-35 | 126 |
| Msa1006820 | MtrunA17_Chr8g0392141 | 33.198 | 247 | 133 | 5 | 7 | 249 | 33 | 251 | 1.93e-34 | 125 |
| Msa1006820 | MtrunA17_Chr5g0410831 | 34.766 | 256 | 127 | 7 | 7 | 252 | 5 | 230 | 2.52e-34 | 124 |
| Msa1006820 | MtrunA17_Chr5g0410821 | 36.434 | 129 | 67 | 3 | 128 | 252 | 1 | 118 | 6.17e-15 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006820 | AT3G01210.2 | 52.157 | 255 | 116 | 2 | 1 | 255 | 1 | 249 | 3.76e-72 | 221 |
| Msa1006820 | AT3G01210.1 | 52.157 | 255 | 116 | 2 | 1 | 255 | 1 | 249 | 3.76e-72 | 221 |
| Msa1006820 | AT1G14340.1 | 45.122 | 246 | 122 | 2 | 5 | 250 | 6 | 238 | 3.03e-64 | 201 |
| Msa1006820 | AT5G16840.2 | 34.413 | 247 | 127 | 7 | 9 | 251 | 9 | 224 | 1.33e-37 | 133 |
| Msa1006820 | AT5G46870.2 | 33.465 | 254 | 139 | 6 | 7 | 252 | 5 | 236 | 7.32e-37 | 132 |
| Msa1006820 | AT5G46870.1 | 33.465 | 254 | 139 | 6 | 7 | 252 | 5 | 236 | 7.32e-37 | 132 |
| Msa1006820 | AT5G16840.3 | 33.603 | 247 | 128 | 7 | 9 | 251 | 7 | 221 | 7.88e-37 | 131 |
| Msa1006820 | AT5G16840.1 | 33.603 | 247 | 128 | 7 | 9 | 251 | 9 | 223 | 8.46e-37 | 131 |
| Msa1006820 | AT4G17720.1 | 32.685 | 257 | 133 | 5 | 7 | 252 | 5 | 232 | 6.93e-36 | 130 |
| Msa1006820 | AT5G32450.1 | 33.603 | 247 | 141 | 5 | 7 | 244 | 6 | 238 | 1.61e-34 | 125 |
| Msa1006820 | AT1G67950.1 | 33.198 | 247 | 131 | 6 | 4 | 245 | 27 | 244 | 1.82e-30 | 115 |
| Msa1006820 | AT1G67950.2 | 33.198 | 247 | 131 | 6 | 4 | 245 | 28 | 245 | 1.82e-30 | 115 |
| Msa1006820 | AT1G67950.3 | 33.198 | 247 | 132 | 7 | 4 | 245 | 27 | 245 | 2.65e-30 | 114 |
| Msa1006820 | AT1G67950.4 | 33.333 | 213 | 109 | 5 | 38 | 245 | 1 | 185 | 1.37e-24 | 98.2 |
Find 72 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTCAATGCCTGAATTTA+TGG | 0.074898 | 7_1:+5670328 | None:intergenic |
| GTTTCAGGGATCAATGATTT+TGG | 0.185854 | 7_1:-5671821 | Msa1006820:intron |
| AATATTGAAAATTGTGAAAA+AGG | 0.242144 | 7_1:+5675594 | None:intergenic |
| GAGTTTATATTTGTATCTAT+TGG | 0.258387 | 7_1:-5669885 | Msa1006820:three_prime_UTR |
| GCTGAACTCAGCAACAAAAT+TGG | 0.265972 | 7_1:-5670362 | Msa1006820:CDS |
| CATCATTCTCTGTCGCTCTT+GGG | 0.292251 | 7_1:+5673892 | None:intergenic |
| TTTATGTAGGTTGTTGAATC+TGG | 0.304615 | 7_1:-5674000 | Msa1006820:five_prime_UTR |
| GGCGAAATCAGCCGCTGATT+TGG | 0.309158 | 7_1:-5670117 | Msa1006820:CDS |
| AGTTTATATTTGTATCTATT+GGG | 0.311772 | 7_1:-5669884 | Msa1006820:three_prime_UTR |
| ACTTCGCGAAAGGAGCTCTT+TGG | 0.322549 | 7_1:-5670163 | Msa1006820:CDS |
| AATGTTGATATCACTAGTTT+TGG | 0.328741 | 7_1:-5669971 | Msa1006820:three_prime_UTR |
| ATAGTTGCGGCAACAGTTAC+TGG | 0.329391 | 7_1:-5670230 | Msa1006820:CDS |
| AAATATATTACTTTGTTTCC+AGG | 0.331798 | 7_1:+5675478 | None:intergenic |
| ACATCATTCTCTGTCGCTCT+TGG | 0.337209 | 7_1:+5673891 | None:intergenic |
| GAAAGGAGCTCTTTGGGTTT+CGG | 0.346069 | 7_1:-5670156 | Msa1006820:CDS |
| AAATCAGCTGTGACCGTAAC+GGG | 0.347381 | 7_1:-5670263 | Msa1006820:CDS |
| ACCGTATACGGCTACTTATC+TGG | 0.357802 | 7_1:-5669998 | Msa1006820:three_prime_UTR |
| CGTTACGGTCACAGCTGATT+TGG | 0.364880 | 7_1:+5670265 | None:intergenic |
| GCGAAATCAGCCGCTGATTT+GGG | 0.367461 | 7_1:-5670116 | Msa1006820:CDS |
| TCAGCAATAATGCAGTTTCC+AGG | 0.367505 | 7_1:+5672784 | None:intergenic |
| TTGACTGAAACCATAAATTC+AGG | 0.369568 | 7_1:-5670338 | Msa1006820:CDS |
| AAAACATACACTAAAATGTT+TGG | 0.369742 | 7_1:-5670068 | Msa1006820:three_prime_UTR |
| CTTCGCGAAAGGAGCTCTTT+GGG | 0.373138 | 7_1:-5670162 | Msa1006820:CDS |
| CTGATTGAAGATTCTGAAGA+TGG | 0.375782 | 7_1:+5673965 | None:intergenic |
| ATACAGATGACAGCAATAAC+TGG | 0.385974 | 7_1:-5671765 | Msa1006820:CDS |
| TTACTTGCTTTGCTTTATGT+AGG | 0.386403 | 7_1:-5674013 | Msa1006820:five_prime_UTR |
| TGATACTGTATTACCGTATA+CGG | 0.386674 | 7_1:-5670010 | Msa1006820:three_prime_UTR |
| ACCAGATAAGTAGCCGTATA+CGG | 0.406295 | 7_1:+5669997 | None:intergenic |
| CCCTGGAGAAGCACTGACTA+TGG | 0.407984 | 7_1:-5670504 | Msa1006820:CDS |
| TATTGTCTGTCTCTTACTCC+TGG | 0.413207 | 7_1:-5675496 | Msa1006820:five_prime_UTR |
| GCCATAGTCAGTGCTTCTCC+AGG | 0.433235 | 7_1:+5670503 | None:intergenic |
| AGCACTGACTATGGCCCAAC+AGG | 0.435623 | 7_1:-5670495 | Msa1006820:CDS |
| GACAAGTTTATTTCTTCCCC+TGG | 0.448188 | 7_1:-5670521 | Msa1006820:CDS |
| AATCCATGATGAGCAGCAAT+TGG | 0.455021 | 7_1:-5669946 | Msa1006820:three_prime_UTR |
| AGTATGTAATACTGTCTTCA+TGG | 0.485803 | 7_1:+5671725 | None:intergenic |
| AAACCAATTGCTGCTCATCA+TGG | 0.501280 | 7_1:+5669943 | None:intergenic |
| GTCAAAACAATGGTAGCTAA+AGG | 0.506039 | 7_1:-5670470 | Msa1006820:CDS |
| ATGCATTTCTATTTCACGCT+GGG | 0.512664 | 7_1:-5671794 | Msa1006820:CDS |
| ATCATTCTCTGTCGCTCTTG+GGG | 0.518956 | 7_1:+5673893 | None:intergenic |
| CATTGAAAGATTTAAATATG+TGG | 0.523394 | 7_1:-5670315 | Msa1006820:CDS |
| TATAGCTGTTGTCCCCGTTA+CGG | 0.523895 | 7_1:+5670250 | None:intergenic |
| TGCAGTAGACTCATAATCAC+TGG | 0.524529 | 7_1:+5672833 | None:intergenic |
| AGTTACTGGGAGAGCAGCTA+TGG | 0.528793 | 7_1:-5670216 | Msa1006820:CDS |
| ACTGTATTATAAAATATGAC+TGG | 0.530872 | 7_1:+5669791 | None:intergenic |
| ATATTGCTTCACTATTTCAA+AGG | 0.537105 | 7_1:-5675576 | Msa1006820:five_prime_UTR |
| TTTCGCGAAGTAGCTGCTAC+TGG | 0.543753 | 7_1:+5670175 | None:intergenic |
| TTGAACGTGTTGATGTGATA+AGG | 0.555755 | 7_1:-5673839 | Msa1006820:intron |
| AGTAGCAGCTACTTCGCGAA+AGG | 0.561199 | 7_1:-5670173 | Msa1006820:CDS |
| ATCATCTACAGCAGCAAACA+AGG | 0.563010 | 7_1:-5670387 | Msa1006820:CDS |
| CAGCAATAATGCAGTTTCCA+GGG | 0.565158 | 7_1:+5672785 | None:intergenic |
| GGGAGAGCAGCTATGGCTGC+TGG | 0.571991 | 7_1:-5670209 | Msa1006820:CDS |
| GAGGAGAAGAGAAACAGAGA+AGG | 0.572294 | 7_1:+5675658 | None:intergenic |
| CAGTTAACAAATATGTATCC+CGG | 0.572446 | 7_1:-5673945 | Msa1006820:exon |
| GATTTCAGCAGTATAGCCAC+CGG | 0.578842 | 7_1:+5673926 | None:intergenic |
| CCATAGTCAGTGCTTCTCCA+GGG | 0.584544 | 7_1:+5670504 | None:intergenic |
| TAGTTGCGGCAACAGTTACT+GGG | 0.586425 | 7_1:-5670229 | Msa1006820:CDS |
| TTGTATTTGAAGTGAAACAG+AGG | 0.590154 | 7_1:+5675639 | None:intergenic |
| CAAATCAGCTGTGACCGTAA+CGG | 0.593214 | 7_1:-5670264 | Msa1006820:CDS |
| GTAATACTGTCTTCATGGTG+TGG | 0.594318 | 7_1:+5671730 | None:intergenic |
| TTCGGATATGTTATCTCGTG+CGG | 0.601464 | 7_1:-5670138 | Msa1006820:CDS |
| AGGAGAAGAGAAACAGAGAA+GGG | 0.604359 | 7_1:+5675659 | None:intergenic |
| AGCGTGAAATAGAAATGCAT+CGG | 0.616795 | 7_1:+5671797 | None:intergenic |
| GATGCATTTCTATTTCACGC+TGG | 0.620963 | 7_1:-5671795 | Msa1006820:CDS |
| CATAGTCAGTGCTTCTCCAG+GGG | 0.633935 | 7_1:+5670505 | None:intergenic |
| GAGCAAAGATGCATTTGTGA+TGG | 0.651958 | 7_1:-5670438 | Msa1006820:CDS |
| CCAACAGGTTGTCAAAACAA+TGG | 0.652844 | 7_1:-5670480 | Msa1006820:CDS |
| TCTTCGACAGGATATGCACA+TGG | 0.669039 | 7_1:-5670543 | Msa1006820:intron |
| ATTTCAGCAGTATAGCCACC+GGG | 0.672279 | 7_1:+5673927 | None:intergenic |
| AATCAGCTGTGACCGTAACG+GGG | 0.690827 | 7_1:-5670262 | Msa1006820:CDS |
| TTGATGATGACCCAAATCAG+CGG | 0.695347 | 7_1:+5670106 | None:intergenic |
| GGGGACAACAGCTATAGTTG+CGG | 0.707278 | 7_1:-5670243 | Msa1006820:CDS |
| TTAACAAATATGTATCCCGG+TGG | 0.755255 | 7_1:-5673942 | Msa1006820:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTATTGTATTTTGTTTA+TGG | - | chr7_1:5673410-5673429 | Msa1006820:intron | 10.0% |
| !!! | TTTTTTTTTCTTTACATTTT+CGG | - | chr7_1:5673809-5673828 | Msa1006820:intron | 10.0% |
| !!! | AAATTTATGTTTTGAAAAAT+TGG | - | chr7_1:5673960-5673979 | Msa1006820:five_prime_UTR | 10.0% |
| !! | AATATTGAAAATTGTGAAAA+AGG | + | chr7_1:5669863-5669882 | None:intergenic | 15.0% |
| !!! | TTTTTTCTTAATAATGATAC+AGG | - | chr7_1:5672597-5672616 | Msa1006820:intron | 15.0% |
| !!! | CTCTAAAGTATTTAATATTA+TGG | + | chr7_1:5674544-5674563 | None:intergenic | 15.0% |
| !! | CATTATGAAATTTAATTAAC+AGG | + | chr7_1:5674796-5674815 | None:intergenic | 15.0% |
| !! | CTGTTAATTAAATTTCATAA+TGG | - | chr7_1:5674794-5674813 | Msa1006820:intron | 15.0% |
| !! | AGTTTATATTTGTATCTATT+GGG | - | chr7_1:5675570-5675589 | Msa1006820:five_prime_UTR | 15.0% |
| !!! | AAATATATTACTTTGTTTCC+AGG | + | chr7_1:5669979-5669998 | None:intergenic | 20.0% |
| !! | AAACAATTAAGTTATGTGAT+TGG | - | chr7_1:5670184-5670203 | Msa1006820:CDS | 20.0% |
| !! | AACAATTAAGTTATGTGATT+GGG | - | chr7_1:5670185-5670204 | Msa1006820:CDS | 20.0% |
| !!! | TCATTTTCTCAAATTATTAC+TGG | + | chr7_1:5670385-5670404 | None:intergenic | 20.0% |
| !! | TATAATTACAGAATATAGCA+CGG | - | chr7_1:5670652-5670671 | Msa1006820:intron | 20.0% |
| !! | AACAATGAAGTTATGTAATT+AGG | - | chr7_1:5670935-5670954 | Msa1006820:intron | 20.0% |
| !! | ACAATGAAGTTATGTAATTA+GGG | - | chr7_1:5670936-5670955 | Msa1006820:intron | 20.0% |
| !!! | ATAGTTTTTGAATTTGTTTC+TGG | - | chr7_1:5671710-5671729 | Msa1006820:intron | 20.0% |
| !! | TGACAAAGTTTAATAATTAC+AGG | - | chr7_1:5672391-5672410 | Msa1006820:intron | 20.0% |
| !! | GACAAAGTTTAATAATTACA+GGG | - | chr7_1:5672392-5672411 | Msa1006820:intron | 20.0% |
| !!! | TTCTAGTCTATCTTATATTT+TGG | + | chr7_1:5672982-5673001 | None:intergenic | 20.0% |
| !!! | TTTACTTTTTAATCCAAATG+TGG | - | chr7_1:5673019-5673038 | Msa1006820:intron | 20.0% |
| !! | ATATTAATAGATAGCTTCAA+TGG | - | chr7_1:5673455-5673474 | Msa1006820:intron | 20.0% |
| !! | AACAAAATACTCTAATGTAA+TGG | + | chr7_1:5673548-5673567 | None:intergenic | 20.0% |
| !!! | TCAAATAACTTTAATTTCTG+TGG | + | chr7_1:5673914-5673933 | None:intergenic | 20.0% |
| !! | ATAATTCAATGTTCAGAATA+AGG | - | chr7_1:5673936-5673955 | Msa1006820:CDS | 20.0% |
| !! | TAATTCAATGTTCAGAATAA+GGG | - | chr7_1:5673937-5673956 | Msa1006820:exon | 20.0% |
| !! | ATACAAAATAGAACCTATAA+AGG | - | chr7_1:5674038-5674057 | Msa1006820:intron | 20.0% |
| !! | ACTAATTGAAAAGAAAACAA+TGG | + | chr7_1:5674151-5674170 | None:intergenic | 20.0% |
| !!! | TTCACAATCTATTTTTACTT+TGG | - | chr7_1:5674442-5674461 | Msa1006820:intron | 20.0% |
| !! | CATTGAAAGATTTAAATATG+TGG | - | chr7_1:5675139-5675158 | Msa1006820:intron | 20.0% |
| !!! | AAACATTTTAGTGTATGTTT+TGG | + | chr7_1:5675387-5675406 | None:intergenic | 20.0% |
| !! | AAAACATACACTAAAATGTT+TGG | - | chr7_1:5675386-5675405 | Msa1006820:five_prime_UTR | 20.0% |
| !! | GAGTTTATATTTGTATCTAT+TGG | - | chr7_1:5675569-5675588 | Msa1006820:five_prime_UTR | 20.0% |
| !! | ACTGTATTATAAAATATGAC+TGG | + | chr7_1:5675666-5675685 | None:intergenic | 20.0% |
| ! | ATATTGCTTCACTATTTCAA+AGG | - | chr7_1:5669878-5669897 | Msa1006820:three_prime_UTR | 25.0% |
| !!! | CATACTTTGTTTTTTCATCT+TGG | - | chr7_1:5669903-5669922 | Msa1006820:three_prime_UTR | 25.0% |
| ! | ACAATTAAGTTATGTGATTG+GGG | - | chr7_1:5670186-5670205 | Msa1006820:CDS | 25.0% |
| ! | GAATATCTGTGTTATATTGA+TGG | - | chr7_1:5670839-5670858 | Msa1006820:intron | 25.0% |
| !!! | ATTGATGCTTATTTCTGTTA+TGG | - | chr7_1:5670981-5671000 | Msa1006820:intron | 25.0% |
| !! | TCATTTTCTCAAATTATTGC+CGG | + | chr7_1:5671134-5671153 | None:intergenic | 25.0% |
| ! | TTGATACTTCACTATAATGT+TGG | - | chr7_1:5671231-5671250 | Msa1006820:intron | 25.0% |
| ! | TTCAGATACTGATAGTTAAA+AGG | + | chr7_1:5671338-5671357 | None:intergenic | 25.0% |
| ! | ACATGATATGAACAAAAAGA+GGG | + | chr7_1:5671388-5671407 | None:intergenic | 25.0% |
| ! | AACATGATATGAACAAAAAG+AGG | + | chr7_1:5671389-5671408 | None:intergenic | 25.0% |
| ! | GGTTACTTAACATTGTTTAT+TGG | - | chr7_1:5671641-5671660 | Msa1006820:intron | 25.0% |
| !! | TCTGGTTTATGATTACATAT+TGG | - | chr7_1:5671728-5671747 | Msa1006820:CDS | 25.0% |
| !! | ATTGTTGCTTAGATAGTTAA+TGG | - | chr7_1:5671755-5671774 | Msa1006820:CDS | 25.0% |
| ! | AATTTCATTAACCACAACTT+TGG | - | chr7_1:5671897-5671916 | Msa1006820:intron | 25.0% |
| ! | TAATGAAACACCTGAAATTA+TGG | + | chr7_1:5671933-5671952 | None:intergenic | 25.0% |
| !! | AATTTTTGTAGCCATGAATT+TGG | + | chr7_1:5671996-5672015 | None:intergenic | 25.0% |
| ! | TGGCTACAAAAATTACATTA+AGG | - | chr7_1:5672002-5672021 | Msa1006820:intron | 25.0% |
| ! | GGCTACAAAAATTACATTAA+GGG | - | chr7_1:5672003-5672022 | Msa1006820:intron | 25.0% |
| ! | ATATGGTTAATAGATATACC+AGG | + | chr7_1:5672045-5672064 | None:intergenic | 25.0% |
| !! | TGTATTATTTCTCCTAATAG+TGG | - | chr7_1:5672260-5672279 | Msa1006820:intron | 25.0% |
| ! | AAATGATCTTTACCACTATT+AGG | + | chr7_1:5672275-5672294 | None:intergenic | 25.0% |
| ! | CTTACAAAAACTGACTATTA+TGG | + | chr7_1:5672333-5672352 | None:intergenic | 25.0% |
| ! | TTCAACAGAGATATGAAATA+TGG | + | chr7_1:5672467-5672486 | None:intergenic | 25.0% |
| ! | ATTGAAAGTTGAAAAGAACA+AGG | + | chr7_1:5672756-5672775 | None:intergenic | 25.0% |
| !! | TCTATAAAGCATGAAAGTTT+TGG | - | chr7_1:5672805-5672824 | Msa1006820:CDS | 25.0% |
| !! | GATTCAATTCATCTTGATTT+TGG | - | chr7_1:5673601-5673620 | Msa1006820:intron | 25.0% |
| ! | ATAGTAATGAGATATCCTTA+TGG | + | chr7_1:5674074-5674093 | None:intergenic | 25.0% |
| ! | ATTGAAAAGAAAACAATGGT+TGG | + | chr7_1:5674147-5674166 | None:intergenic | 25.0% |
| !! | TTAAGTTGCTTATCCAAATA+AGG | - | chr7_1:5674405-5674424 | Msa1006820:intron | 25.0% |
| ! | AAATTTAATTAACAGGCCTA+AGG | + | chr7_1:5674789-5674808 | None:intergenic | 25.0% |
| !! | GTTGAAATAAGTTGACAAAT+AGG | + | chr7_1:5674883-5674902 | None:intergenic | 25.0% |
| ! | AGCAAAAAACTACAATTGTT+TGG | - | chr7_1:5675421-5675440 | Msa1006820:five_prime_UTR | 25.0% |
| !!! | AATGTTGATATCACTAGTTT+TGG | - | chr7_1:5675483-5675502 | Msa1006820:five_prime_UTR | 25.0% |
| ! | TTGTATTTGAAGTGAAACAG+AGG | + | chr7_1:5669818-5669837 | None:intergenic | 30.0% |
| ATGTGTTTAGGCTTAAATTG+AGG | - | chr7_1:5670215-5670234 | Msa1006820:CDS | 30.0% | |
| TAGTATGAAGCATACTCAAA+AGG | - | chr7_1:5670781-5670800 | Msa1006820:intron | 30.0% | |
| !! | CAAAAGGTTTGTTTTTCCAT+TGG | - | chr7_1:5670797-5670816 | Msa1006820:intron | 30.0% |
| TTACTTGCTTTGCTTTATGT+AGG | - | chr7_1:5671441-5671460 | Msa1006820:intron | 30.0% | |
| TTTATGTAGGTTGTTGAATC+TGG | - | chr7_1:5671454-5671473 | Msa1006820:intron | 30.0% | |
| CAGTTAACAAATATGTATCC+CGG | - | chr7_1:5671509-5671528 | Msa1006820:intron | 30.0% | |
| !!! | CAGAACTTTTTTGAATACTG+TGG | - | chr7_1:5671587-5671606 | Msa1006820:intron | 30.0% |
| TATTAATGAGTTTCAACACC+TGG | + | chr7_1:5671786-5671805 | None:intergenic | 30.0% | |
| AACTTCATTAACCACGAATT+TGG | - | chr7_1:5671814-5671833 | Msa1006820:CDS | 30.0% | |
| TTGTATGCAGTTCAAATATG+TGG | + | chr7_1:5671873-5671892 | None:intergenic | 30.0% | |
| ACATGGATAACCATAATTTC+AGG | - | chr7_1:5671920-5671939 | Msa1006820:intron | 30.0% | |
| ATTTGAACACCTGAAAATTG+TGG | - | chr7_1:5671960-5671979 | Msa1006820:intron | 30.0% | |
| ! | TGTCATAAACCACAATTTTC+AGG | + | chr7_1:5671972-5671991 | None:intergenic | 30.0% |
| GTTTATGACATCCAAATTCA+TGG | - | chr7_1:5671982-5672001 | Msa1006820:intron | 30.0% | |
| GTTAACGAAGTTCAAATAAG+TGG | + | chr7_1:5672083-5672102 | None:intergenic | 30.0% | |
| AGAGATATGAAATATGGTCA+AGG | + | chr7_1:5672461-5672480 | None:intergenic | 30.0% | |
| CATGTTGTAACTTTGTAAGT+TGG | - | chr7_1:5672498-5672517 | Msa1006820:intron | 30.0% | |
| ! | TTGTAACTTTGTAAGTTGGA+GGG | - | chr7_1:5672502-5672521 | Msa1006820:intron | 30.0% |
| AACTAACAGTTCTACCATAT+AGG | + | chr7_1:5672528-5672547 | None:intergenic | 30.0% | |
| TAGTATATGTGAAGAGTTCT+TGG | - | chr7_1:5672555-5672574 | Msa1006820:intron | 30.0% | |
| ! | TACTGCATATGTGACTTTTA+GGG | - | chr7_1:5672637-5672656 | Msa1006820:intron | 30.0% |
| ! | AAGGCTTTTATCATCTTTGT+TGG | - | chr7_1:5672697-5672716 | Msa1006820:intron | 30.0% |
| ATCATCTTTGTTGGATATCA+TGG | - | chr7_1:5672706-5672725 | Msa1006820:intron | 30.0% | |
| ! | ATAAACAAGTCCTTTTCCAA+AGG | - | chr7_1:5673181-5673200 | Msa1006820:intron | 30.0% |
| TTTCTCCATAAATGTTGTTC+TGG | + | chr7_1:5673392-5673411 | None:intergenic | 30.0% | |
| TTGTAGAGCTATATTTGGAA+AGG | + | chr7_1:5673488-5673507 | None:intergenic | 30.0% | |
| ! | TTCCAAATATAGCTCTACAA+TGG | - | chr7_1:5673488-5673507 | Msa1006820:intron | 30.0% |
| ! | TCCAAATATAGCTCTACAAT+GGG | - | chr7_1:5673489-5673508 | Msa1006820:intron | 30.0% |
| AGTATGTAATACTGTCTTCA+TGG | + | chr7_1:5673732-5673751 | None:intergenic | 30.0% | |
| AACATGTGCATTCATTTCAA+CGG | + | chr7_1:5673881-5673900 | None:intergenic | 30.0% | |
| ! | TGGATTTGAGTTTCCTTTAT+AGG | + | chr7_1:5674054-5674073 | None:intergenic | 30.0% |
| AAAGGAAACTCAAATCCATA+AGG | - | chr7_1:5674056-5674075 | Msa1006820:intron | 30.0% | |
| AACTTAGGACATGTTTGAAT+TGG | - | chr7_1:5674191-5674210 | Msa1006820:intron | 30.0% | |
| GATTGTGAAACAATTGACTA+AGG | + | chr7_1:5674431-5674450 | None:intergenic | 30.0% | |
| TGTAAGGTTAGATTGTGATT+AGG | + | chr7_1:5674637-5674656 | None:intergenic | 30.0% | |
| AGATGACAAAGAAACCTTAT+GGG | - | chr7_1:5674691-5674710 | Msa1006820:intron | 30.0% | |
| CGATCGTTATTAACAGTTAT+AGG | - | chr7_1:5674738-5674757 | Msa1006820:intron | 30.0% | |
| TTGACTGAAACCATAAATTC+AGG | - | chr7_1:5675116-5675135 | Msa1006820:intron | 30.0% | |
| TCTTTCAATGCCTGAATTTA+TGG | + | chr7_1:5675129-5675148 | None:intergenic | 30.0% | |
| TGATACTGTATTACCGTATA+CGG | - | chr7_1:5675444-5675463 | Msa1006820:five_prime_UTR | 30.0% | |
| CGACATTACAATTGATACGT+AGG | - | chr7_1:5670357-5670376 | Msa1006820:CDS | 35.0% | |
| ! | ACGTTTTCAATCTGTCATGT+TGG | - | chr7_1:5670486-5670505 | Msa1006820:CDS | 35.0% |
| TTTGATGTCTTCAAAGACGT+AGG | + | chr7_1:5670599-5670618 | None:intergenic | 35.0% | |
| CATATTCAGAAAACCACAGT+TGG | + | chr7_1:5670741-5670760 | None:intergenic | 35.0% | |
| !! | TTTGTTTTTCCATTGGTTGC+TGG | - | chr7_1:5670804-5670823 | Msa1006820:intron | 35.0% |
| ACAAGCAGTTCATCACAAAT+GGG | + | chr7_1:5670877-5670896 | None:intergenic | 35.0% | |
| TACAAGCAGTTCATCACAAA+TGG | + | chr7_1:5670878-5670897 | None:intergenic | 35.0% | |
| ATTTGTGATGAACTGCTTGT+AGG | - | chr7_1:5670877-5670896 | Msa1006820:intron | 35.0% | |
| TTTGTGATGAACTGCTTGTA+GGG | - | chr7_1:5670878-5670897 | Msa1006820:intron | 35.0% | |
| TTAGGGACATCAATGTGTTT+AGG | - | chr7_1:5670953-5670972 | Msa1006820:intron | 35.0% | |
| TTGAATATAACCTCACGTGT+TGG | - | chr7_1:5671160-5671179 | Msa1006820:intron | 35.0% | |
| ACAATACACTGTCTCACAAA+TGG | - | chr7_1:5671284-5671303 | Msa1006820:intron | 35.0% | |
| TCACAAATGGAGCAATCATA+GGG | - | chr7_1:5671297-5671316 | Msa1006820:intron | 35.0% | |
| GTAACATTAATGTTCCTTGC+AGG | - | chr7_1:5671358-5671377 | Msa1006820:intron | 35.0% | |
| ! | CTGATTGAAGATTCTGAAGA+TGG | + | chr7_1:5671492-5671511 | None:intergenic | 35.0% |
| TTAACAAATATGTATCCCGG+TGG | - | chr7_1:5671512-5671531 | Msa1006820:intron | 35.0% | |
| ! | TTGAACGTGTTGATGTGATA+AGG | - | chr7_1:5671615-5671634 | Msa1006820:intron | 35.0% |
| ! | AGATAGTTAATGGATACACC+AGG | - | chr7_1:5671765-5671784 | Msa1006820:CDS | 35.0% |
| ATTAACCACGAATTTGGACT+TGG | - | chr7_1:5671820-5671839 | Msa1006820:intron | 35.0% | |
| ATTAACCACAACTTTGGACA+TGG | - | chr7_1:5671903-5671922 | Msa1006820:intron | 35.0% | |
| ! | GTTGTAACTTTGTAAGTTGG+AGG | - | chr7_1:5672501-5672520 | Msa1006820:intron | 35.0% |
| ! | CTACTGCATATGTGACTTTT+AGG | - | chr7_1:5672636-5672655 | Msa1006820:intron | 35.0% |
| CTGCATTATTGCTGAATGTA+AGG | - | chr7_1:5672678-5672697 | Msa1006820:intron | 35.0% | |
| CTCAAGTCAATATATGAACG+AGG | - | chr7_1:5673141-5673160 | Msa1006820:intron | 35.0% | |
| ! | CTATGTCTTCTGAAAAGCAA+TGG | + | chr7_1:5673241-5673260 | None:intergenic | 35.0% |
| !! | TTGCTTTTCAGAAGACATAG+TGG | - | chr7_1:5673241-5673260 | Msa1006820:intron | 35.0% |
| TCAGTCCAGAACAACATTTA+TGG | - | chr7_1:5673384-5673403 | Msa1006820:intron | 35.0% | |
| ACCCATTGTAGAGCTATATT+TGG | + | chr7_1:5673493-5673512 | None:intergenic | 35.0% | |
| ! | GTTTCAGGGATCAATGATTT+TGG | - | chr7_1:5673633-5673652 | Msa1006820:intron | 35.0% |
| AGCGTGAAATAGAAATGCAT+CGG | + | chr7_1:5673660-5673679 | None:intergenic | 35.0% | |
| ATGCATTTCTATTTCACGCT+GGG | - | chr7_1:5673660-5673679 | Msa1006820:intron | 35.0% | |
| ATACAGATGACAGCAATAAC+TGG | - | chr7_1:5673689-5673708 | Msa1006820:intron | 35.0% | |
| !! | GTAAGAGAGCATTCTAAGTA+AGG | + | chr7_1:5673773-5673792 | None:intergenic | 35.0% |
| TCGGAGATATTCATAAACCA+TGG | - | chr7_1:5673828-5673847 | Msa1006820:intron | 35.0% | |
| GTGATCTCAAATTGTTACCA+TGG | + | chr7_1:5673848-5673867 | None:intergenic | 35.0% | |
| TATTGCTCTTCTCTTATGAG+AGG | + | chr7_1:5674021-5674040 | None:intergenic | 35.0% | |
| ACATGTCCTAAGTTACTCTT+GGG | + | chr7_1:5674185-5674204 | None:intergenic | 35.0% | |
| AACATGTCCTAAGTTACTCT+TGG | + | chr7_1:5674186-5674205 | None:intergenic | 35.0% | |
| GCTTATTACATAAGCTCTCT+TGG | - | chr7_1:5674314-5674333 | Msa1006820:intron | 35.0% | |
| !! | CAATTGACTAAGGCCTTATT+TGG | + | chr7_1:5674421-5674440 | None:intergenic | 35.0% |
| !! | TTACTTTGGCCTTTTGTAGT+TGG | - | chr7_1:5674456-5674475 | Msa1006820:intron | 35.0% |
| AAACATACCTTCTTCCATGA+TGG | - | chr7_1:5674588-5674607 | Msa1006820:intron | 35.0% | |
| TGAGAAAGAACGAACATGTA+AGG | + | chr7_1:5674653-5674672 | None:intergenic | 35.0% | |
| TGTCATCTGTCATCAATAAC+AGG | + | chr7_1:5674679-5674698 | None:intergenic | 35.0% | |
| CAGATGACAAAGAAACCTTA+TGG | - | chr7_1:5674690-5674709 | Msa1006820:intron | 35.0% | |
| ATGACTTTATCTCTCCCATA+AGG | + | chr7_1:5674708-5674727 | None:intergenic | 35.0% | |
| !!! | CAACATGTTTTTTCTTCGAC+AGG | - | chr7_1:5674899-5674918 | Msa1006820:intron | 35.0% |
| !!! | CATTGTTTTGACAACCTGTT+GGG | + | chr7_1:5674976-5674995 | None:intergenic | 35.0% |
| GTCAAAACAATGGTAGCTAA+AGG | - | chr7_1:5674984-5675003 | Msa1006820:intron | 35.0% | |
| AGGAGAAGAGAAACAGAGAA+GGG | + | chr7_1:5669798-5669817 | None:intergenic | 40.0% | |
| TATTGTCTGTCTCTTACTCC+TGG | - | chr7_1:5669958-5669977 | Msa1006820:three_prime_UTR | 40.0% | |
| TTGGGGACATCAATGTGTTT+AGG | - | chr7_1:5670203-5670222 | Msa1006820:CDS | 40.0% | |
| TGACAGATTGAAAACGTAGC+TGG | + | chr7_1:5670483-5670502 | None:intergenic | 40.0% | |
| TCACAAAGTTCAACCAACTG+TGG | - | chr7_1:5670725-5670744 | Msa1006820:intron | 40.0% | |
| CTCACAAATGGAGCAATCAT+AGG | - | chr7_1:5671296-5671315 | Msa1006820:intron | 40.0% | |
| ! | CGTGTTGATGTGATAAGGTA+AGG | - | chr7_1:5671620-5671639 | Msa1006820:intron | 40.0% |
| GTTAACCAAGTCCAAATTCG+TGG | + | chr7_1:5671828-5671847 | None:intergenic | 40.0% | |
| GTTATCCATGTCCAAAGTTG+TGG | + | chr7_1:5671911-5671930 | None:intergenic | 40.0% | |
| GGTTGATTGCGTTCAGTATA+TGG | + | chr7_1:5672062-5672081 | None:intergenic | 40.0% | |
| ACAGTGAAGCTAAGATAAGC+TGG | + | chr7_1:5672173-5672192 | None:intergenic | 40.0% | |
| TGCAGTAGACTCATAATCAC+TGG | + | chr7_1:5672624-5672643 | None:intergenic | 40.0% | |
| CAGCAATAATGCAGTTTCCA+GGG | + | chr7_1:5672672-5672691 | None:intergenic | 40.0% | |
| TCAGCAATAATGCAGTTTCC+AGG | + | chr7_1:5672673-5672692 | None:intergenic | 40.0% | |
| !!! | GCATGAAAGTTTTGGTGTTG+TGG | - | chr7_1:5672813-5672832 | Msa1006820:CDS | 40.0% |
| ATGTGCTCTACAACATGTTG+TGG | - | chr7_1:5672858-5672877 | Msa1006820:intron | 40.0% | |
| TCTACAACATGTTGTGGTTG+TGG | - | chr7_1:5672864-5672883 | Msa1006820:intron | 40.0% | |
| ! | CCATGCTTCATAGTTTGTCA+CGG | - | chr7_1:5672934-5672953 | Msa1006820:intron | 40.0% |
| ATATGAACGAGGTGAGTTAG+AGG | - | chr7_1:5673152-5673171 | Msa1006820:intron | 40.0% | |
| ! | CAAGTCCTTTTCCAAAGGAA+TGG | - | chr7_1:5673186-5673205 | Msa1006820:intron | 40.0% |
| ! | TCACACCATTCCTTTGGAAA+AGG | + | chr7_1:5673194-5673213 | None:intergenic | 40.0% |
| ! | TGGTGTGAGAGTAGTGTTTT+CGG | - | chr7_1:5673206-5673225 | Msa1006820:intron | 40.0% |
| !! | AGAAGACATAGTGGATGACA+TGG | - | chr7_1:5673250-5673269 | Msa1006820:intron | 40.0% |
| ATCAGATGAATCACACGTTC+AGG | - | chr7_1:5673291-5673310 | Msa1006820:intron | 40.0% | |
| TTCAGGATTACGTGACTTCT+GGG | - | chr7_1:5673308-5673327 | Msa1006820:intron | 40.0% | |
| AAAAAGACTCCGCCTATGAA+TGG | - | chr7_1:5673343-5673362 | Msa1006820:intron | 40.0% | |
| GAGCTATATTTGGAAAGGAC+AGG | + | chr7_1:5673483-5673502 | None:intergenic | 40.0% | |
| !!! | TTTTGGTCCAATGCTGTTTC+AGG | - | chr7_1:5673618-5673637 | Msa1006820:intron | 40.0% |
| !! | TTTGGTCCAATGCTGTTTCA+GGG | - | chr7_1:5673619-5673638 | Msa1006820:intron | 40.0% |
| ATTGATCCCTGAAACAGCAT+TGG | + | chr7_1:5673628-5673647 | None:intergenic | 40.0% | |
| GATGCATTTCTATTTCACGC+TGG | - | chr7_1:5673659-5673678 | Msa1006820:intron | 40.0% | |
| GTAATACTGTCTTCATGGTG+TGG | + | chr7_1:5673727-5673746 | None:intergenic | 40.0% | |
| TCTTCTCTTATGAGAGGAGA+CGG | + | chr7_1:5674015-5674034 | None:intergenic | 40.0% | |
| CTCTTTCCCAAGAGTAACTT+AGG | - | chr7_1:5674176-5674195 | Msa1006820:intron | 40.0% | |
| TAAGCACTTGTGAGACTGTT+TGG | - | chr7_1:5674238-5674257 | Msa1006820:intron | 40.0% | |
| AAGCACTTGTGAGACTGTTT+GGG | - | chr7_1:5674239-5674258 | Msa1006820:intron | 40.0% | |
| ! | GTGTCATAAGCTGTTTCAAC+AGG | + | chr7_1:5674269-5674288 | None:intergenic | 40.0% |
| GTACACAAGCCAACTACAAA+AGG | + | chr7_1:5674468-5674487 | None:intergenic | 40.0% | |
| ACTTCTACTCTCTACCATCA+TGG | + | chr7_1:5674605-5674624 | None:intergenic | 40.0% | |
| ! | GACAAGTTTATTTCTTCCCC+TGG | - | chr7_1:5674933-5674952 | Msa1006820:intron | 40.0% |
| !!! | CCATTGTTTTGACAACCTGT+TGG | + | chr7_1:5674977-5674996 | None:intergenic | 40.0% |
| CCAACAGGTTGTCAAAACAA+TGG | - | chr7_1:5674974-5674993 | Msa1006820:intron | 40.0% | |
| GAGCAAAGATGCATTTGTGA+TGG | - | chr7_1:5675016-5675035 | Msa1006820:intron | 40.0% | |
| ATCATCTACAGCAGCAAACA+AGG | - | chr7_1:5675067-5675086 | Msa1006820:intron | 40.0% | |
| GCTGAACTCAGCAACAAAAT+TGG | - | chr7_1:5675092-5675111 | Msa1006820:intron | 40.0% | |
| TTCGGATATGTTATCTCGTG+CGG | - | chr7_1:5675316-5675335 | Msa1006820:intron | 40.0% | |
| !! | TTGATGATGACCCAAATCAG+CGG | + | chr7_1:5675351-5675370 | None:intergenic | 40.0% |
| ACCAGATAAGTAGCCGTATA+CGG | + | chr7_1:5675460-5675479 | None:intergenic | 40.0% | |
| AATCCATGATGAGCAGCAAT+TGG | - | chr7_1:5675508-5675527 | Msa1006820:five_prime_UTR | 40.0% | |
| AAACCAATTGCTGCTCATCA+TGG | + | chr7_1:5675514-5675533 | None:intergenic | 40.0% | |
| GAGGAGAAGAGAAACAGAGA+AGG | + | chr7_1:5669799-5669818 | None:intergenic | 45.0% | |
| TAACCGCTTGTGTGTGTTGT+TGG | - | chr7_1:5670418-5670437 | Msa1006820:CDS | 45.0% | |
| TGTCCAACAACACACACAAG+CGG | + | chr7_1:5670424-5670443 | None:intergenic | 45.0% | |
| ATTCACACTCCAGCAACCAA+TGG | + | chr7_1:5670816-5670835 | None:intergenic | 45.0% | |
| ATGAAGCACGCTCATAGATG+TGG | - | chr7_1:5671073-5671092 | Msa1006820:intron | 45.0% | |
| CTGCATAACTGTCAGTGTAC+TGG | + | chr7_1:5671106-5671125 | None:intergenic | 45.0% | |
| TGACAGTTATGCAGAGACAC+CGG | - | chr7_1:5671112-5671131 | Msa1006820:intron | 45.0% | |
| AAAAAGAGGGTGATCCTGCA+AGG | + | chr7_1:5671375-5671394 | None:intergenic | 45.0% | |
| ATTTCAGCAGTATAGCCACC+GGG | + | chr7_1:5671530-5671549 | None:intergenic | 45.0% | |
| GATTTCAGCAGTATAGCCAC+CGG | + | chr7_1:5671531-5671550 | None:intergenic | 45.0% | |
| ATCATTCTCTGTCGCTCTTG+GGG | + | chr7_1:5671564-5671583 | None:intergenic | 45.0% | |
| CATCATTCTCTGTCGCTCTT+GGG | + | chr7_1:5671565-5671584 | None:intergenic | 45.0% | |
| ACATCATTCTCTGTCGCTCT+TGG | + | chr7_1:5671566-5671585 | None:intergenic | 45.0% | |
| ! | TGTAAGTTGGAGGGCCTATA+TGG | - | chr7_1:5672511-5672530 | Msa1006820:intron | 45.0% |
| !! | TTTTAGGGATGCTTATGCCC+TGG | - | chr7_1:5672652-5672671 | Msa1006820:intron | 45.0% |
| TGTCTGATACACAAACCCAC+AGG | + | chr7_1:5672839-5672858 | None:intergenic | 45.0% | |
| CCGTGACAAACTATGAAGCA+TGG | + | chr7_1:5672937-5672956 | None:intergenic | 45.0% | |
| ACTCACTCTGACCATTCTCT+CGG | + | chr7_1:5673046-5673065 | None:intergenic | 45.0% | |
| CTACTCTCACACCATTCCTT+TGG | + | chr7_1:5673200-5673219 | None:intergenic | 45.0% | |
| ! | TGTGAGAGTAGTGTTTTCGG+CGG | - | chr7_1:5673209-5673228 | Msa1006820:intron | 45.0% |
| GTTCAGGATTACGTGACTTC+TGG | - | chr7_1:5673307-5673326 | Msa1006820:intron | 45.0% | |
| TCAGGATTACGTGACTTCTG+GGG | - | chr7_1:5673309-5673328 | Msa1006820:intron | 45.0% | |
| CAAACCAGACCATTCATAGG+CGG | + | chr7_1:5673355-5673374 | None:intergenic | 45.0% | |
| ! | GCCTATGAATGGTCTGGTTT+GGG | - | chr7_1:5673354-5673373 | Msa1006820:intron | 45.0% |
| AAGAAGCGACGAATCAAGAC+AGG | + | chr7_1:5674492-5674511 | None:intergenic | 45.0% | |
| CTCTCTACCATCATGGAAGA+AGG | + | chr7_1:5674598-5674617 | None:intergenic | 45.0% | |
| TCTTCGACAGGATATGCACA+TGG | - | chr7_1:5674911-5674930 | Msa1006820:intron | 45.0% | |
| CAAATCAGCTGTGACCGTAA+CGG | - | chr7_1:5675190-5675209 | Msa1006820:intron | 45.0% | |
| AAATCAGCTGTGACCGTAAC+GGG | - | chr7_1:5675191-5675210 | Msa1006820:intron | 45.0% | |
| TATAGCTGTTGTCCCCGTTA+CGG | + | chr7_1:5675207-5675226 | None:intergenic | 45.0% | |
| ATAGTTGCGGCAACAGTTAC+TGG | - | chr7_1:5675224-5675243 | Msa1006820:intron | 45.0% | |
| TAGTTGCGGCAACAGTTACT+GGG | - | chr7_1:5675225-5675244 | Msa1006820:intron | 45.0% | |
| ! | GAAAGGAGCTCTTTGGGTTT+CGG | - | chr7_1:5675298-5675317 | Msa1006820:intron | 45.0% |
| ACCGTATACGGCTACTTATC+TGG | - | chr7_1:5675456-5675475 | Msa1006820:five_prime_UTR | 45.0% | |
| ! | GTGCCAAACACTGGAAGTGT+CGG | - | chr7_1:5671182-5671201 | Msa1006820:intron | 50.0% |
| !! | CAAACACTGGAAGTGTCGGT+CGG | - | chr7_1:5671186-5671205 | Msa1006820:intron | 50.0% |
| !!! | GGTTAGCGAGTTTTGAGACC+TGG | - | chr7_1:5672024-5672043 | Msa1006820:intron | 50.0% |
| !!! | AGTTTTGGTGTTGTGGCCTG+TGG | - | chr7_1:5672820-5672839 | Msa1006820:CDS | 50.0% |
| !!! | GTTTTGGTGTTGTGGCCTGT+GGG | - | chr7_1:5672821-5672840 | Msa1006820:CDS | 50.0% |
| CCATTCTCTCGGTCCACATT+TGG | + | chr7_1:5673035-5673054 | None:intergenic | 50.0% | |
| CCAAATGTGGACCGAGAGAA+TGG | - | chr7_1:5673032-5673051 | Msa1006820:intron | 50.0% | |
| GTGAGTAGCAGACGTGTGTT+AGG | - | chr7_1:5673060-5673079 | Msa1006820:intron | 50.0% | |
| AGTAGCAGACGTGTGTTAGG+CGG | - | chr7_1:5673063-5673082 | Msa1006820:intron | 50.0% | |
| ! | CAGTAGCAAGAGTACGTCAG+CGG | - | chr7_1:5673090-5673109 | Msa1006820:intron | 50.0% |
| ! | AGTAGCAAGAGTACGTCAGC+GGG | - | chr7_1:5673091-5673110 | Msa1006820:intron | 50.0% |
| ! | GTGAGAGTAGTGTTTTCGGC+GGG | - | chr7_1:5673210-5673229 | Msa1006820:intron | 50.0% |
| AGTGGATGACATGGCGTGAT+TGG | - | chr7_1:5673259-5673278 | Msa1006820:intron | 50.0% | |
| CAGGATTACGTGACTTCTGG+GGG | - | chr7_1:5673310-5673329 | Msa1006820:intron | 50.0% | |
| CGCCTATGAATGGTCTGGTT+TGG | - | chr7_1:5673353-5673372 | Msa1006820:intron | 50.0% | |
| GCCCAAACCAGACCATTCAT+AGG | + | chr7_1:5673358-5673377 | None:intergenic | 50.0% | |
| GGAGACGGTCACACATAAAC+TGG | + | chr7_1:5674000-5674019 | None:intergenic | 50.0% | |
| CATAGTCAGTGCTTCTCCAG+GGG | + | chr7_1:5674952-5674971 | None:intergenic | 50.0% | |
| CCATAGTCAGTGCTTCTCCA+GGG | + | chr7_1:5674953-5674972 | None:intergenic | 50.0% | |
| CGTTACGGTCACAGCTGATT+TGG | + | chr7_1:5675192-5675211 | None:intergenic | 50.0% | |
| AATCAGCTGTGACCGTAACG+GGG | - | chr7_1:5675192-5675211 | Msa1006820:intron | 50.0% | |
| GGGGACAACAGCTATAGTTG+CGG | - | chr7_1:5675211-5675230 | Msa1006820:intron | 50.0% | |
| AGTTACTGGGAGAGCAGCTA+TGG | - | chr7_1:5675238-5675257 | Msa1006820:intron | 50.0% | |
| TTTCGCGAAGTAGCTGCTAC+TGG | + | chr7_1:5675282-5675301 | None:intergenic | 50.0% | |
| AGTAGCAGCTACTTCGCGAA+AGG | - | chr7_1:5675281-5675300 | Msa1006820:intron | 50.0% | |
| ACTTCGCGAAAGGAGCTCTT+TGG | - | chr7_1:5675291-5675310 | Msa1006820:intron | 50.0% | |
| CTTCGCGAAAGGAGCTCTTT+GGG | - | chr7_1:5675292-5675311 | Msa1006820:intron | 50.0% | |
| !! | GCGAAATCAGCCGCTGATTT+GGG | - | chr7_1:5675338-5675357 | Msa1006820:intron | 50.0% |
| GTGTTTGGCACCAACACGTG+AGG | + | chr7_1:5671173-5671192 | None:intergenic | 55.0% | |
| !! | CACGTGTTGGTGCCAAACAC+TGG | - | chr7_1:5671173-5671192 | Msa1006820:intron | 55.0% |
| CGACCGACACTTCCAGTGTT+TGG | + | chr7_1:5671188-5671207 | None:intergenic | 55.0% | |
| ! | GTAGCAAGAGTACGTCAGCG+GGG | - | chr7_1:5673092-5673111 | Msa1006820:intron | 55.0% |
| GGATGACATGGCGTGATTGG+CGG | - | chr7_1:5673262-5673281 | Msa1006820:intron | 55.0% | |
| GACTCCGCCTATGAATGGTC+TGG | - | chr7_1:5673348-5673367 | Msa1006820:intron | 55.0% | |
| !! | TGAATGGTCTGGTTTGGGCC+TGG | - | chr7_1:5673359-5673378 | Msa1006820:intron | 55.0% |
| !! | GAATGGTCTGGTTTGGGCCT+GGG | - | chr7_1:5673360-5673379 | Msa1006820:intron | 55.0% |
| ! | TGTTGTTCTGGACTGAGCCC+AGG | + | chr7_1:5673380-5673399 | None:intergenic | 55.0% |
| !! | CCCTGGAGAAGCACTGACTA+TGG | - | chr7_1:5674950-5674969 | Msa1006820:intron | 55.0% |
| GCCATAGTCAGTGCTTCTCC+AGG | + | chr7_1:5674954-5674973 | None:intergenic | 55.0% | |
| !! | AGCACTGACTATGGCCCAAC+AGG | - | chr7_1:5674959-5674978 | Msa1006820:intron | 55.0% |
| ! | GGCGAAATCAGCCGCTGATT+TGG | - | chr7_1:5675337-5675356 | Msa1006820:intron | 55.0% |
| ! | CAAGAGTACGTCAGCGGGGA+TGG | - | chr7_1:5673096-5673115 | Msa1006820:intron | 60.0% |
| GGGAGAGCAGCTATGGCTGC+TGG | - | chr7_1:5675245-5675264 | Msa1006820:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 5669779 | 5675697 | 5669779 | ID=Msa1006820;Name=Msa1006820 |
| chr7_1 | mRNA | 5669779 | 5675697 | 5669779 | ID=Msa1006820-mRNA-1;Parent=Msa1006820;Name=Msa1006820-mRNA-1;_AED=0.02;_eAED=0.02;_QI=393|1|1|1|0.75|0.6|5|318|255 |
| chr7_1 | exon | 5669779 | 5670555 | 5669779 | ID=Msa1006820-mRNA-1:exon:1828;Parent=Msa1006820-mRNA-1 |
| chr7_1 | exon | 5671720 | 5671836 | 5671720 | ID=Msa1006820-mRNA-1:exon:1827;Parent=Msa1006820-mRNA-1 |
| chr7_1 | exon | 5672782 | 5672857 | 5672782 | ID=Msa1006820-mRNA-1:exon:1826;Parent=Msa1006820-mRNA-1 |
| chr7_1 | exon | 5673840 | 5674034 | 5673840 | ID=Msa1006820-mRNA-1:exon:1825;Parent=Msa1006820-mRNA-1 |
| chr7_1 | exon | 5675384 | 5675697 | 5675384 | ID=Msa1006820-mRNA-1:exon:1824;Parent=Msa1006820-mRNA-1 |
| chr7_1 | five_prime_UTR | 5675384 | 5675697 | 5675384 | ID=Msa1006820-mRNA-1:five_prime_utr;Parent=Msa1006820-mRNA-1 |
| chr7_1 | five_prime_UTR | 5673956 | 5674034 | 5673956 | ID=Msa1006820-mRNA-1:five_prime_utr;Parent=Msa1006820-mRNA-1 |
| chr7_1 | CDS | 5673840 | 5673955 | 5673840 | ID=Msa1006820-mRNA-1:cds;Parent=Msa1006820-mRNA-1 |
| chr7_1 | CDS | 5672782 | 5672857 | 5672782 | ID=Msa1006820-mRNA-1:cds;Parent=Msa1006820-mRNA-1 |
| chr7_1 | CDS | 5671720 | 5671836 | 5671720 | ID=Msa1006820-mRNA-1:cds;Parent=Msa1006820-mRNA-1 |
| chr7_1 | CDS | 5670097 | 5670555 | 5670097 | ID=Msa1006820-mRNA-1:cds;Parent=Msa1006820-mRNA-1 |
| chr7_1 | three_prime_UTR | 5669779 | 5670096 | 5669779 | ID=Msa1006820-mRNA-1:three_prime_utr;Parent=Msa1006820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
