AlfalfaGEDB | Msa1006820

M. sativa cultivar zhongmu-4 / Msa1006820

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00076.25

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1006820	XP_003621177.1	95.276	254	12	0	1	254	1	254	1.17e-170	481

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1006820	sp\|Q9LFD5\|BPA1_ARATH	33.603	247	128	7	9	251	9	223	8.32e-36	131

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1006820	G7KZY3	95.276	254	12	0	1	254	1	254	5.61e-171	481

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003340	Msa1006820	0.801238	9.896412e-49	-8.615850e-47
Msa0011910	Msa1006820	0.802605	5.181751e-49	-8.615850e-47
Msa0016380	Msa1006820	0.800026	1.748109e-48	-8.615850e-47
Msa0022960	Msa1006820	0.818983	1.474182e-52	-8.615850e-47
Msa0037300	Msa1006820	0.802633	5.113281e-49	-8.615850e-47
Msa0042210	Msa1006820	0.810865	9.320109e-51	-8.615850e-47
Msa0064310	Msa1006820	0.848686	5.234113e-60	-8.615850e-47
Msa0069230	Msa1006820	0.818919	1.524406e-52	-8.615850e-47
Msa0076590	Msa1006820	0.808066	3.716649e-50	-8.615850e-47
Msa0076990	Msa1006820	0.805414	1.350487e-49	-8.615850e-47

Showing 1 to 10 of 133 entries

Previous1 2 3 4 5…14Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1006820	MtrunA17_Chr7g0217131	95.276	254	12	0	1	254	1	254	1.08e-174	481
Msa1006820	MtrunA17_Chr5g0416421	49.600	250	111	4	5	251	7	244	1.32e-80	242
Msa1006820	MtrunA17_Chr1g0161591	33.865	251	125	4	7	249	33	250	2.73e-39	138
Msa1006820	MtrunA17_Chr7g0253621	33.878	245	144	5	7	245	5	237	8.06e-37	130
Msa1006820	MtrunA17_Chr8g0366351	33.333	255	132	5	7	252	5	230	4.92e-35	126
Msa1006820	MtrunA17_Chr8g0392141	33.198	247	133	5	7	249	33	251	1.93e-34	125
Msa1006820	MtrunA17_Chr5g0410831	34.766	256	127	7	7	252	5	230	2.52e-34	124
Msa1006820	MtrunA17_Chr5g0410821	36.434	129	67	3	128	252	1	118	6.17e-15	70.1

Showing 1 to 8 of 8 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1006820	AT3G01210.2	52.157	255	116	2	1	255	1	249	3.76e-72	221
Msa1006820	AT3G01210.1	52.157	255	116	2	1	255	1	249	3.76e-72	221
Msa1006820	AT1G14340.1	45.122	246	122	2	5	250	6	238	3.03e-64	201
Msa1006820	AT5G16840.2	34.413	247	127	7	9	251	9	224	1.33e-37	133
Msa1006820	AT5G46870.2	33.465	254	139	6	7	252	5	236	7.32e-37	132
Msa1006820	AT5G46870.1	33.465	254	139	6	7	252	5	236	7.32e-37	132
Msa1006820	AT5G16840.3	33.603	247	128	7	9	251	7	221	7.88e-37	131
Msa1006820	AT5G16840.1	33.603	247	128	7	9	251	9	223	8.46e-37	131
Msa1006820	AT4G17720.1	32.685	257	133	5	7	252	5	232	6.93e-36	130
Msa1006820	AT5G32450.1	33.603	247	141	5	7	244	6	238	1.61e-34	125

Showing 1 to 10 of 14 entries

Previous1 2Next

Find 72 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATACACTAAAATGTT+TGG	0.369742	7_1:-5670068	Msa1006820:three_prime_UTR
AAACCAATTGCTGCTCATCA+TGG	0.501280	7_1:+5669943	None:intergenic
AAATATATTACTTTGTTTCC+AGG	0.331798	7_1:+5675478	None:intergenic
AAATCAGCTGTGACCGTAAC+GGG	0.347381	7_1:-5670263	Msa1006820:CDS
AATATTGAAAATTGTGAAAA+AGG	0.242144	7_1:+5675594	None:intergenic
AATCAGCTGTGACCGTAACG+GGG	0.690827	7_1:-5670262	Msa1006820:CDS
AATCCATGATGAGCAGCAAT+TGG	0.455021	7_1:-5669946	Msa1006820:three_prime_UTR
AATGTTGATATCACTAGTTT+TGG	0.328741	7_1:-5669971	Msa1006820:three_prime_UTR
ACATCATTCTCTGTCGCTCT+TGG	0.337209	7_1:+5673891	None:intergenic
ACCAGATAAGTAGCCGTATA+CGG	0.406295	7_1:+5669997	None:intergenic

Showing 1 to 10 of 72 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATGTGTTTAGGCTTAAATTG+AGG	-	chr7_1:5670215-5670234	Msa1006820:CDS	30.0%
TAGTATGAAGCATACTCAAA+AGG	-	chr7_1:5670781-5670800	Msa1006820:intron	30.0%
TTACTTGCTTTGCTTTATGT+AGG	-	chr7_1:5671441-5671460	Msa1006820:intron	30.0%
TTTATGTAGGTTGTTGAATC+TGG	-	chr7_1:5671454-5671473	Msa1006820:intron	30.0%
CAGTTAACAAATATGTATCC+CGG	-	chr7_1:5671509-5671528	Msa1006820:intron	30.0%
TATTAATGAGTTTCAACACC+TGG	+	chr7_1:5671786-5671805	None:intergenic	30.0%
AACTTCATTAACCACGAATT+TGG	-	chr7_1:5671814-5671833	Msa1006820:CDS	30.0%
TTGTATGCAGTTCAAATATG+TGG	+	chr7_1:5671873-5671892	None:intergenic	30.0%
ACATGGATAACCATAATTTC+AGG	-	chr7_1:5671920-5671939	Msa1006820:intron	30.0%
ATTTGAACACCTGAAAATTG+TGG	-	chr7_1:5671960-5671979	Msa1006820:intron	30.0%

Showing 1 to 10 of 284 entries

Previous1 2 3 4 5…29Next

Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	5669779	5675697	5669779	ID=Msa1006820;Name=Msa1006820
chr7_1	mRNA	5669779	5675697	5669779	ID=Msa1006820-mRNA-1;Parent=Msa1006820;Name=Msa1006820-mRNA-1;_AED=0.02;_eAED=0.02;_QI=393\|1\|1\|1\|0.75\|0.6\|5\|318\|255
chr7_1	exon	5669779	5670555	5669779	ID=Msa1006820-mRNA-1:exon:1828;Parent=Msa1006820-mRNA-1
chr7_1	exon	5671720	5671836	5671720	ID=Msa1006820-mRNA-1:exon:1827;Parent=Msa1006820-mRNA-1
chr7_1	exon	5672782	5672857	5672782	ID=Msa1006820-mRNA-1:exon:1826;Parent=Msa1006820-mRNA-1
chr7_1	exon	5673840	5674034	5673840	ID=Msa1006820-mRNA-1:exon:1825;Parent=Msa1006820-mRNA-1
chr7_1	exon	5675384	5675697	5675384	ID=Msa1006820-mRNA-1:exon:1824;Parent=Msa1006820-mRNA-1
chr7_1	five_prime_UTR	5675384	5675697	5675384	ID=Msa1006820-mRNA-1:five_prime_utr;Parent=Msa1006820-mRNA-1
chr7_1	five_prime_UTR	5673956	5674034	5673956	ID=Msa1006820-mRNA-1:five_prime_utr;Parent=Msa1006820-mRNA-1
chr7_1	CDS	5673840	5673955	5673840	ID=Msa1006820-mRNA-1:cds;Parent=Msa1006820-mRNA-1
chr7_1	CDS	5672782	5672857	5672782	ID=Msa1006820-mRNA-1:cds;Parent=Msa1006820-mRNA-1
chr7_1	CDS	5671720	5671836	5671720	ID=Msa1006820-mRNA-1:cds;Parent=Msa1006820-mRNA-1
chr7_1	CDS	5670097	5670555	5670097	ID=Msa1006820-mRNA-1:cds;Parent=Msa1006820-mRNA-1
chr7_1	three_prime_UTR	5669779	5670096	5669779	ID=Msa1006820-mRNA-1:three_prime_utr;Parent=Msa1006820-mRNA-1

Gene Sequence

>Msa1006820

ATGTATCCCGGTGGCTATACTGCTGAAATCACAAACTTAACCCCAAGAGCGACAGAGAATGATGTGCAGAACTTTTTTGAATACTGTGGTGTAATTGAACGTGTTGATGTGATAAGGTCCAGTGATTATGAGTCTACTGCATATGTGACTTTTAGGGATGCTTATGCCCTGGAAACTGCATTATTGCTGAATGGATCAATGATTTTGGACCGATGCATTTCTATTTCACGCTGGGAAACTTATACAGATGACAGCAATAACTGGAACAATCATACACCACACCATGAAGACAGTATTACATACTCACAAGATATGCACATGGACAAGTTTATTTCTTCCCCTGGAGAAGCACTGACTATGGCCCAACAGGTTGTCAAAACAATGGTAGCTAAAGGATTTGTGCTGAGCAAAGATGCATTTGTGATGGCAAAAGCTTTTGATGAATCGCGCAGTGTATCATCTACAGCAGCAAACAAGGTTGCTGAACTCAGCAACAAAATTGGTTTGACTGAAACCATAAATTCAGGCATTGAAAGATTTAAATATGTGGATGAAAACTATCATGTTACAGATATCACCAAATCAGCTGTGACCGTAACGGGGACAACAGCTATAGTTGCGGCAACAGTTACTGGGAGAGCAGCTATGGCTGCTGGTAATGCTATAGCCAGTAGCAGCTACTTCGCGAAAGGAGCTCTTTGGGTTTCGGATATGTTATCTCGTGCGGCGAAATCAGCCGCTGATTTGGGTCATCATCAAAACAACTGA

Protein sequence

>Msa1006820

MYPGGYTAEITNLTPRATENDVQNFFEYCGVIERVDVIRSSDYESTAYVTFRDAYALETALLLNGSMILDRCISISRWETYTDDSNNWNNHTPHHEDSITYSQDMHMDKFISSPGEALTMAQQVVKTMVAKGFVLSKDAFVMAKAFDESRSVSSTAANKVAELSNKIGLTETINSGIERFKYVDENYHVTDITKSAVTVTGTTAIVAATVTGRAAMAAGNAIASSSYFAKGALWVSDMLSRAAKSAADLGHHQNN*