AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1135910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1135910 MtrunA17_Chr7g0217131 94.882 254 13 0 1 254 1 254 3.27e-174 479
Msa1135910 MtrunA17_Chr5g0416421 50.400 250 109 4 5 251 7 244 1.78e-82 247
Msa1135910 MtrunA17_Chr1g0161591 33.068 251 127 4 7 249 33 250 3.16e-38 135
Msa1135910 MtrunA17_Chr7g0253621 34.286 245 143 5 7 245 5 237 2.20e-37 132
Msa1135910 MtrunA17_Chr8g0366351 33.333 255 132 5 7 252 5 230 1.53e-35 127
Msa1135910 MtrunA17_Chr5g0410831 34.766 256 127 7 7 252 5 230 8.13e-35 126
Msa1135910 MtrunA17_Chr8g0392141 32.794 247 134 5 7 249 33 251 9.06e-34 124
Msa1135910 MtrunA17_Chr5g0410821 36.434 129 67 3 128 252 1 118 4.44e-15 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1135910 AT3G01210.2 52.941 255 114 2 1 255 1 249 8.52e-74 225
Msa1135910 AT3G01210.1 52.941 255 114 2 1 255 1 249 8.52e-74 225
Msa1135910 AT1G14340.1 45.935 246 120 2 5 250 6 238 4.24e-66 206
Msa1135910 AT5G16840.2 33.735 249 130 6 7 251 7 224 2.73e-39 137
Msa1135910 AT5G16840.1 34.137 249 128 7 7 251 7 223 1.52e-38 135
Msa1135910 AT5G16840.3 34.137 249 128 7 7 251 5 221 1.69e-38 135
Msa1135910 AT5G46870.2 33.858 254 138 6 7 252 5 236 5.10e-38 135
Msa1135910 AT5G46870.1 33.858 254 138 6 7 252 5 236 5.10e-38 135
Msa1135910 AT4G17720.1 32.685 257 133 5 7 252 5 232 5.67e-36 130
Msa1135910 AT5G32450.1 33.603 247 141 5 7 244 6 238 1.36e-34 125
Msa1135910 AT1G67950.1 33.198 247 131 6 4 245 27 244 3.99e-30 114
Msa1135910 AT1G67950.2 33.198 247 131 6 4 245 28 245 4.43e-30 114
Msa1135910 AT1G67950.3 33.198 247 132 7 4 245 27 245 6.34e-30 113
Msa1135910 AT1G67950.4 33.333 213 109 5 38 245 1 185 3.06e-24 97.1

Find 71 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCAATGCCTGAATTTA+TGG 0.074898 7_4:-3750036 None:intergenic
GTTTCAGGGATCAATGATTT+TGG 0.185854 7_4:+3748516 Msa1135910:intron
TATTGTCTGTCTCTTACTTC+TGG 0.239854 7_4:+3744387 Msa1135910:five_prime_UTR
AATATTGAAAATTGTGAAAA+AGG 0.242144 7_4:-3744290 None:intergenic
GCTGAACTCAGCAACAAAAT+TGG 0.265972 7_4:+3750002 Msa1135910:CDS
AGTTTATATTTGTATGTATT+GGG 0.280029 7_4:+3750480 Msa1135910:three_prime_UTR
GGCGAAATCTGCCGCTGATT+TGG 0.280434 7_4:+3750247 Msa1135910:CDS
CATCATTCTCTGTCGCTCTT+GGG 0.292251 7_4:-3745810 None:intergenic
GCGAAATCTGCCGCTGATTT+GGG 0.295701 7_4:+3750248 Msa1135910:CDS
TTTATGTAGGTTGTTGAATC+TGG 0.304615 7_4:+3745703 Msa1135910:five_prime_UTR
ACTTCGCGAAAGGAGCTCTT+TGG 0.322549 7_4:+3750201 Msa1135910:CDS
AATGTTGATATCACTAGTTT+TGG 0.328741 7_4:+3750393 Msa1135910:three_prime_UTR
ACATCATTCTCTGTCGCTCT+TGG 0.337209 7_4:-3745811 None:intergenic
GAAAGGAGCTCTTTGGGTTT+CGG 0.346069 7_4:+3750208 Msa1135910:CDS
AAATCAGCTGTGACCGTAAC+GGG 0.347381 7_4:+3750101 Msa1135910:CDS
AATATTGCTTAACTCTTTCA+AGG 0.347766 7_4:+3744307 Msa1135910:five_prime_UTR
TGAGCAGTAATGCAGTTTCC+AGG 0.355838 7_4:-3747539 None:intergenic
ACCGTATACGGCTACTTATC+TGG 0.357802 7_4:+3750366 Msa1135910:three_prime_UTR
GAGTTTATATTTGTATGTAT+TGG 0.360981 7_4:+3750479 Msa1135910:three_prime_UTR
CGTTACGGTCACAGCTGATT+TGG 0.364880 7_4:-3750099 None:intergenic
TTGACTGAAACCATAAATTC+AGG 0.369568 7_4:+3750026 Msa1135910:CDS
AAAACATACACTAAAATGTT+TGG 0.369742 7_4:+3750296 Msa1135910:three_prime_UTR
CTTCGCGAAAGGAGCTCTTT+GGG 0.373138 7_4:+3750202 Msa1135910:CDS
CTGATTGAAGATTCTGAAGA+TGG 0.375782 7_4:-3745737 None:intergenic
ATACAGATGACAGCAATAAC+TGG 0.385974 7_4:+3748572 Msa1135910:CDS
TGATACTGTATTACCGTATA+CGG 0.386674 7_4:+3750354 Msa1135910:three_prime_UTR
ATAGTTGCGGCAACAGTTAC+CGG 0.400255 7_4:+3750134 Msa1135910:CDS
ACCAGATAAGTAGCCGTATA+CGG 0.406295 7_4:-3750367 None:intergenic
CCCTGGAGAAGCACTGACTA+TGG 0.407984 7_4:+3749860 Msa1135910:CDS
TGCAGTAGACTCATAATCAT+TGG 0.433105 7_4:-3747490 None:intergenic
GCCATAGTCAGTGCTTCTCC+AGG 0.433235 7_4:-3749861 None:intergenic
AGCACTGACTATGGCCCAAC+AGG 0.435623 7_4:+3749869 Msa1135910:CDS
TTTCGCGAAGTAGCTGCTAT+TGG 0.444755 7_4:-3750189 None:intergenic
GACAAGTTTATTTCTTCCCC+TGG 0.448188 7_4:+3749843 Msa1135910:CDS
AATCCATGATGAGCAGCAAT+TGG 0.455021 7_4:+3750418 Msa1135910:three_prime_UTR
AGTATGTAATACTGTCTTCA+TGG 0.485803 7_4:-3748612 None:intergenic
AGCAGCCATAGCTGCTCTCC+CGG 0.505893 7_4:-3750153 None:intergenic
GTCAAAACAATGGTAGCTAA+AGG 0.506039 7_4:+3749894 Msa1135910:CDS
AAACCAATTGCTGCTCATCA+TGG 0.508087 7_4:-3750421 None:intergenic
ATGCATTTCTATTTCACGCT+GGG 0.512664 7_4:+3748543 Msa1135910:CDS
ATCATTCTCTGTCGCTCTTG+GGG 0.518956 7_4:-3745809 None:intergenic
CATTGAAAGATTTAAATATG+TGG 0.523394 7_4:+3750049 Msa1135910:CDS
TATAGCTGTTGTCCCCGTTA+CGG 0.523895 7_4:-3750114 None:intergenic
ACTGTATTATAAAATATGAC+TGG 0.530872 7_4:-3750573 None:intergenic
AGTTACCGGGAGAGCAGCTA+TGG 0.540397 7_4:+3750148 Msa1135910:CDS
TTGAACGTGTTGATGTGATA+AGG 0.555755 7_4:+3745863 Msa1135910:CDS
ATCATCTACAGCAGCAAACA+AGG 0.563010 7_4:+3749977 Msa1135910:CDS
GAGGAGAAGAGAAACAGAGA+AGG 0.572294 7_4:-3744226 None:intergenic
CAGTTAACAAATATGTATCC+CGG 0.572446 7_4:+3745757 Msa1135910:exon
AGCGTGAAATAGAAATGCAT+TGG 0.573031 7_4:-3748540 None:intergenic
GATTTCAGCAGTATAGCCAC+CGG 0.578842 7_4:-3745776 None:intergenic
GGGAGAGCAGCTATGGCTGC+TGG 0.580006 7_4:+3750155 Msa1135910:CDS
GAGCAGTAATGCAGTTTCCA+GGG 0.580206 7_4:-3747538 None:intergenic
CCATAGTCAGTGCTTCTCCA+GGG 0.584544 7_4:-3749860 None:intergenic
TTGTATTTGAAGTGAAACAG+AGG 0.590154 7_4:-3744245 None:intergenic
CAAATCAGCTGTGACCGTAA+CGG 0.593214 7_4:+3750100 Msa1135910:CDS
GTAATACTGTCTTCATGGTG+TGG 0.594318 7_4:-3748607 None:intergenic
TTCGGATATGTTATCTCGTG+CGG 0.601464 7_4:+3750226 Msa1135910:CDS
AATAGCAGCTACTTCGCGAA+AGG 0.601571 7_4:+3750191 Msa1135910:CDS
AGGAGAAGAGAAACAGAGAA+GGG 0.604359 7_4:-3744225 None:intergenic
TAGTTGCGGCAACAGTTACC+GGG 0.619088 7_4:+3750135 Msa1135910:CDS
AATGCATTTCTATTTCACGC+TGG 0.619462 7_4:+3748542 Msa1135910:CDS
CATAGTCAGTGCTTCTCCAG+GGG 0.633935 7_4:-3749859 None:intergenic
GAGCAAAGATGCATTTGTGA+TGG 0.651958 7_4:+3749926 Msa1135910:CDS
CCAACAGGTTGTCAAAACAA+TGG 0.652844 7_4:+3749884 Msa1135910:CDS
TTGATGATGACCCAAATCAG+CGG 0.660400 7_4:-3750258 None:intergenic
TCTTCGACAGGATATGCACA+TGG 0.669039 7_4:+3749821 Msa1135910:intron
ATTTCAGCAGTATAGCCACC+GGG 0.672279 7_4:-3745775 None:intergenic
AATCAGCTGTGACCGTAACG+GGG 0.690827 7_4:+3750102 Msa1135910:CDS
GGGGACAACAGCTATAGTTG+CGG 0.707278 7_4:+3750121 Msa1135910:CDS
TTAACAAATATGTATCCCGG+TGG 0.755255 7_4:+3745760 Msa1135910:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTATTGTATTTTGTTTA+TGG + chr7_4:3748293-3748312 Msa1135910:intron 10.0%
!!! TTTTTTTTTCTTTACATTTT+CGG + chr7_4:3748693-3748712 Msa1135910:intron 10.0%
!! AATATTGAAAATTGTGAAAA+AGG - chr7_4:3744293-3744312 None:intergenic 15.0%
!!! TTATTTTCTCAAATTATTAC+TGG - chr7_4:3744806-3744825 None:intergenic 15.0%
!! AAATTTATGTTTCAGAAAAT+TGG + chr7_4:3748844-3748863 Msa1135910:intron 15.0%
!!! CTCTAAAGTATTTATTATTA+TGG - chr7_4:3749453-3749472 None:intergenic 15.0%
!! CATTATGAAATTTAATTAAC+AGG - chr7_4:3749705-3749724 None:intergenic 15.0%
!! CTGTTAATTAAATTTCATAA+TGG + chr7_4:3749703-3749722 Msa1135910:intron 15.0%
!! AGTTTATATTTGTATGTATT+GGG + chr7_4:3750480-3750499 Msa1135910:three_prime_UTR 15.0%
!!! TTTACTTTGTTTTCTCATAT+TGG + chr7_4:3744333-3744352 Msa1135910:five_prime_UTR 20.0%
!! AAACAATTAAGTTATGTGAT+TGG + chr7_4:3744613-3744632 Msa1135910:intron 20.0%
!! AACAATTAAGTTATGTGATT+GGG + chr7_4:3744614-3744633 Msa1135910:intron 20.0%
!! ATAGCTTATAAACATCATTT+AGG - chr7_4:3744725-3744744 None:intergenic 20.0%
!! TATAATTACAGAATATAGTG+CGG + chr7_4:3745143-3745162 Msa1135910:intron 20.0%
!! AAACATTATGAACAAAAAGA+GGG - chr7_4:3745638-3745657 None:intergenic 20.0%
!!! AATTTTAGTAACCATGAATT+TGG - chr7_4:3746521-3746540 None:intergenic 20.0%
!! TGGTTACTAAAATTACATTA+AGG + chr7_4:3746527-3746546 Msa1135910:intron 20.0%
!! GGTTACTAAAATTACATTAA+GGG + chr7_4:3746528-3746547 Msa1135910:intron 20.0%
!! CTATTCTATTCTATCAAATA+CGG - chr7_4:3746671-3746690 None:intergenic 20.0%
!! ATTACAAAAACTGACTATTA+TGG - chr7_4:3747202-3747221 None:intergenic 20.0%
!! TTCAACAGAAATATGAAATA+TGG - chr7_4:3747336-3747355 None:intergenic 20.0%
!!! TCTATATAGCATGAAATTTT+TGG + chr7_4:3747674-3747693 Msa1135910:intron 20.0%
!!! TTCTAGTCTATCTTATATTT+TGG - chr7_4:3747864-3747883 None:intergenic 20.0%
!!! TTTACTTTTTAATCCAAATG+TGG + chr7_4:3747900-3747919 Msa1135910:intron 20.0%
!! ATATTAATAGATAGCTTCAA+TGG + chr7_4:3748338-3748357 Msa1135910:intron 20.0%
!! AACAAAATACTCTAATGTAA+TGG - chr7_4:3748431-3748450 None:intergenic 20.0%
!! ATACAAAATAGAAGCTATAA+AGG + chr7_4:3748951-3748970 Msa1135910:intron 20.0%
!! ACTAATTGAAAAGAAAACAA+TGG - chr7_4:3749064-3749083 None:intergenic 20.0%
!! CATTGAAAGATTTAAATATG+TGG + chr7_4:3750049-3750068 Msa1135910:CDS 20.0%
!!! AAACATTTTAGTGTATGTTT+TGG - chr7_4:3750297-3750316 None:intergenic 20.0%
!! AAAACATACACTAAAATGTT+TGG + chr7_4:3750296-3750315 Msa1135910:three_prime_UTR 20.0%
!! GAGTTTATATTTGTATGTAT+TGG + chr7_4:3750479-3750498 Msa1135910:three_prime_UTR 20.0%
!! ACTGTATTATAAAATATGAC+TGG - chr7_4:3750576-3750595 None:intergenic 20.0%
! AATATTGCTTAACTCTTTCA+AGG + chr7_4:3744307-3744326 Msa1135910:five_prime_UTR 25.0%
! ACAATTAAGTTATGTGATTG+GGG + chr7_4:3744615-3744634 Msa1135910:intron 25.0%
!! ATGTGTTTAGGATTAAATTG+AGG + chr7_4:3744644-3744663 Msa1135910:intron 25.0%
!!! ATTAACAAATTTTGACTTGC+AGG + chr7_4:3745019-3745038 Msa1135910:intron 25.0%
! ATTGATGCTTATTTGTGTTA+TGG + chr7_4:3745208-3745227 Msa1135910:intron 25.0%
!! TCATTTTCTCAAATTATTGC+CGG - chr7_4:3745364-3745383 None:intergenic 25.0%
! ATTGAATATAACCTATGTGT+TGG + chr7_4:3745389-3745408 Msa1135910:intron 25.0%
! GAAACATTATGAACAAAAAG+AGG - chr7_4:3745639-3745658 None:intergenic 25.0%
!!! ATACTTGTTTTGCTTTATGT+AGG + chr7_4:3745690-3745709 Msa1135910:intron 25.0%
! GGTTACTTAACATTGTTTAT+TGG + chr7_4:3745889-3745908 Msa1135910:intron 25.0%
!!! ATAGTTTTTGAATTTGTTCC+TGG + chr7_4:3745958-3745977 Msa1135910:intron 25.0%
! AAATTCCTTGATACATTATC+AGG - chr7_4:3746059-3746078 None:intergenic 25.0%
! GTTCAAATAAGTGGTTAATT+TGG + chr7_4:3746260-3746279 Msa1135910:intron 25.0%
! AATATGTGGTTAATTACGTT+CGG - chr7_4:3746381-3746400 None:intergenic 25.0%
! AACTTCATTAACCACAAATT+TGG + chr7_4:3746419-3746438 Msa1135910:intron 25.0%
! TAATGAAACACCTGAAATTA+TGG - chr7_4:3746455-3746474 None:intergenic 25.0%
! TTTGTACTTGCAAAAAAGTA+CGG + chr7_4:3746788-3746807 Msa1135910:intron 25.0%
! AACCATCATAATATTCCTAA+AGG - chr7_4:3747111-3747130 None:intergenic 25.0%
! AAATTATCTTTACCACTGTT+AGG - chr7_4:3747147-3747166 None:intergenic 25.0%
!!! TTTGTCAAATTTTGATGACA+TGG - chr7_4:3747247-3747266 None:intergenic 25.0%
! AGAAATATGAAATATGGTCA+AGG - chr7_4:3747330-3747349 None:intergenic 25.0%
! ATTGAAAGTTGAAAAGAACA+AGG - chr7_4:3747625-3747644 None:intergenic 25.0%
!! GATTCAATTCATCTTGATTT+TGG + chr7_4:3748484-3748503 Msa1135910:intron 25.0%
! TAATTCAATGTTCAGAATGT+CGG + chr7_4:3748821-3748840 Msa1135910:intron 25.0%
! ATAGTAATGAGATATCCTTA+TGG - chr7_4:3748987-3749006 None:intergenic 25.0%
! ATTGAAAAGAAAACAATGGT+TGG - chr7_4:3749060-3749079 None:intergenic 25.0%
!! TTAAGTTGCTTATCCAAATA+AGG + chr7_4:3749314-3749333 Msa1135910:intron 25.0%
!!! TTCACAATCTATTTTTACGT+TGG + chr7_4:3749351-3749370 Msa1135910:intron 25.0%
! AAATTTAATTAACAGGCCTA+AGG - chr7_4:3749698-3749717 None:intergenic 25.0%
! AGCAAAAAACTACAATTGTT+TGG + chr7_4:3750331-3750350 Msa1135910:three_prime_UTR 25.0%
!!! AATGTTGATATCACTAGTTT+TGG + chr7_4:3750393-3750412 Msa1135910:three_prime_UTR 25.0%
! TTGTATTTGAAGTGAAACAG+AGG - chr7_4:3744248-3744267 None:intergenic 30.0%
! TGTCTTTTTCTAACAATGCA+TGG + chr7_4:3744962-3744981 Msa1135910:intron 30.0%
! TTTGCTATCTTCAAAGAAGT+AGG - chr7_4:3745090-3745109 None:intergenic 30.0%
ATCGGATACTGATAGTTAAA+AGG - chr7_4:3745588-3745607 None:intergenic 30.0%
AAGGAACGTTAATGTTACAT+CGG - chr7_4:3745606-3745625 None:intergenic 30.0%
TTTATGTAGGTTGTTGAATC+TGG + chr7_4:3745703-3745722 Msa1135910:five_prime_UTR 30.0%
CAGTTAACAAATATGTATCC+CGG + chr7_4:3745757-3745776 Msa1135910:exon 30.0%
!!! CAGAACTTTTTTGAATACTG+TGG + chr7_4:3745835-3745854 Msa1135910:CDS 30.0%
CAATTCTCTTTCAAATACGA+AGG - chr7_4:3746181-3746200 None:intergenic 30.0%
! CAGGAAAAGTTGTCTAATTT+TGG - chr7_4:3746216-3746235 None:intergenic 30.0%
!! TTTCCTGACAACTTTTTAAG+TGG + chr7_4:3746229-3746248 Msa1135910:intron 30.0%
TAACCACTTAAAAAGTTGTC+AGG - chr7_4:3746235-3746254 None:intergenic 30.0%
GTTAACACAGTTCAAATAAG+TGG + chr7_4:3746251-3746270 Msa1135910:intron 30.0%
! GGTTAATTTGGTTCATTAGA+TGG + chr7_4:3746272-3746291 Msa1135910:intron 30.0%
TTGGTTCATTAGATGGTTAA+TGG + chr7_4:3746279-3746298 Msa1135910:intron 30.0%
GTAACTTCATTAACCGAATT+TGG + chr7_4:3746336-3746355 Msa1135910:intron 30.0%
ATTAACCACAAATTTGGACA+TGG + chr7_4:3746425-3746444 Msa1135910:intron 30.0%
ACATGGATAACCATAATTTC+AGG + chr7_4:3746442-3746461 Msa1135910:intron 30.0%
AGATGGCTAATAGATATATC+AGG - chr7_4:3746570-3746589 None:intergenic 30.0%
GTTAACGAAGTTCAAATAAG+TGG - chr7_4:3746608-3746627 None:intergenic 30.0%
! AGCCTTTAGGAATATTATGA+TGG + chr7_4:3747106-3747125 Msa1135910:intron 30.0%
! AGTATTATTTCTCCTAACAG+TGG + chr7_4:3747132-3747151 Msa1135910:intron 30.0%
CATGTTGTAACTTTGTAAGT+TGG + chr7_4:3747367-3747386 Msa1135910:intron 30.0%
! TTGTAACTTTGTAAGTTGGA+GGG + chr7_4:3747371-3747390 Msa1135910:intron 30.0%
AACTAACAGTTCTACCATAT+AGG - chr7_4:3747397-3747416 None:intergenic 30.0%
TAGTATATGTGAAGAGTTCT+TGG + chr7_4:3747424-3747443 Msa1135910:intron 30.0%
! TACTGCATATGTGACTTTTA+GGG + chr7_4:3747506-3747525 Msa1135910:CDS 30.0%
ATCATCTTTGTTGCATATCA+TGG + chr7_4:3747575-3747594 Msa1135910:intron 30.0%
!!! CATGAAATTTTTGGTGTTGT+GGG + chr7_4:3747683-3747702 Msa1135910:intron 30.0%
! ATAAACAAGTCCTTTTCCAA+AGG + chr7_4:3748064-3748083 Msa1135910:intron 30.0%
! CTATGTCTTCTGAAAAGAAA+TGG - chr7_4:3748124-3748143 None:intergenic 30.0%
! TTTCTTTTCAGAAGACATAG+TGG + chr7_4:3748124-3748143 Msa1135910:intron 30.0%
TTTCTCCATAAATGTTGTTC+AGG - chr7_4:3748275-3748294 None:intergenic 30.0%
TTGTAGAGCTATATTTGGAA+AGG - chr7_4:3748371-3748390 None:intergenic 30.0%
! TTCCAAATATAGCTCTACAA+TGG + chr7_4:3748371-3748390 Msa1135910:intron 30.0%
! TCCAAATATAGCTCTACAAT+GGG + chr7_4:3748372-3748391 Msa1135910:intron 30.0%
AGTATGTAATACTGTCTTCA+TGG - chr7_4:3748615-3748634 None:intergenic 30.0%
!! ATAAGTAAGAGAGCATTCTA+AGG - chr7_4:3748660-3748679 None:intergenic 30.0%
AAAGGAAACTCAAATCCATA+AGG + chr7_4:3748969-3748988 Msa1135910:intron 30.0%
AACTTAGGACATGTTTGAAT+TGG + chr7_4:3749104-3749123 Msa1135910:intron 30.0%
GCAGCTTATTTACATAATCT+AGG + chr7_4:3749223-3749242 Msa1135910:intron 30.0%
GATTGTGAAACAATTGACTA+TGG - chr7_4:3749340-3749359 None:intergenic 30.0%
TGTAAGGTTAGATTGTGATT+AGG - chr7_4:3749546-3749565 None:intergenic 30.0%
AGATGACAAAGAAACCTTAT+GGG + chr7_4:3749600-3749619 Msa1135910:intron 30.0%
CGATCGTTATTAACAGTTAT+AGG + chr7_4:3749647-3749666 Msa1135910:intron 30.0%
!!! AACATGTTTTTTTCTTCGAC+AGG + chr7_4:3749809-3749828 Msa1135910:intron 30.0%
TTGACTGAAACCATAAATTC+AGG + chr7_4:3750026-3750045 Msa1135910:CDS 30.0%
TCTTTCAATGCCTGAATTTA+TGG - chr7_4:3750039-3750058 None:intergenic 30.0%
TGATACTGTATTACCGTATA+CGG + chr7_4:3750354-3750373 Msa1135910:three_prime_UTR 30.0%
TATTGTCTGTCTCTTACTTC+TGG + chr7_4:3744387-3744406 Msa1135910:five_prime_UTR 35.0%
ATCAAAGACATATGCACGAT+TGG - chr7_4:3744525-3744544 None:intergenic 35.0%
ATCAATTGTAGTGTTGTGTC+TGG - chr7_4:3744774-3744793 None:intergenic 35.0%
CAACACTACAATTGATACGT+AGG + chr7_4:3744778-3744797 Msa1135910:intron 35.0%
ACGTATTCAATCTGTCATGT+TGG + chr7_4:3744920-3744939 Msa1135910:intron 35.0%
! TTTTCCTTTGATTGCTCAGT+TGG - chr7_4:3744993-3745012 None:intergenic 35.0%
TCGATCCTTCACTATAATGT+TGG + chr7_4:3745481-3745500 Msa1135910:intron 35.0%
AGAGACCAACATTATAGTGA+AGG - chr7_4:3745489-3745508 None:intergenic 35.0%
! CTGATTGAAGATTCTGAAGA+TGG - chr7_4:3745740-3745759 None:intergenic 35.0%
TTAACAAATATGTATCCCGG+TGG + chr7_4:3745760-3745779 Msa1135910:exon 35.0%
! TTGAACGTGTTGATGTGATA+AGG + chr7_4:3745863-3745882 Msa1135910:CDS 35.0%
CCAATACGTAATCATAAACC+AGG - chr7_4:3745979-3745998 None:intergenic 35.0%
CCTGGTTTATGATTACGTAT+TGG + chr7_4:3745976-3745995 Msa1135910:intron 35.0%
! ACACACCTGATAATGTATCA+AGG + chr7_4:3746051-3746070 Msa1135910:intron 35.0%
ACTGTAGCCTGAATTTAAGT+CGG - chr7_4:3746138-3746157 None:intergenic 35.0%
CTTAAATTCAGGCTACAGTT+TGG + chr7_4:3746139-3746158 Msa1135910:intron 35.0%
! TAGATGGTTAATGGATACAC+CGG + chr7_4:3746288-3746307 Msa1135910:intron 35.0%
TCATTAACCGAATTTGGACT+TGG + chr7_4:3746342-3746361 Msa1135910:intron 35.0%
ACGTTAACCAAGTCCAAATT+CGG - chr7_4:3746352-3746371 None:intergenic 35.0%
TGTGGTTAATGAAGTTACGT+TGG - chr7_4:3746415-3746434 None:intergenic 35.0%
GTTATCCATGTCCAAATTTG+TGG - chr7_4:3746433-3746452 None:intergenic 35.0%
ATTTGAACAGCTGAAAACTG+TGG + chr7_4:3746482-3746501 Msa1135910:intron 35.0%
TGTTGTGACATCCAAATTCA+TGG + chr7_4:3746507-3746526 Msa1135910:intron 35.0%
ACAGTAAAGCTAAGATAAGC+TGG - chr7_4:3746697-3746716 None:intergenic 35.0%
! ACTTGCAAAAAAGTACGGTA+AGG + chr7_4:3746793-3746812 Msa1135910:intron 35.0%
! CTTGCAAAAAAGTACGGTAA+GGG + chr7_4:3746794-3746813 Msa1135910:intron 35.0%
! AGGGTTAAGTATCGTATTCT+AGG + chr7_4:3746822-3746841 Msa1135910:intron 35.0%
! GGGTTAAGTATCGTATTCTA+GGG + chr7_4:3746823-3746842 Msa1135910:intron 35.0%
CTAGGGTTTAGACTGATTAT+TGG + chr7_4:3746840-3746859 Msa1135910:intron 35.0%
ATGGTATTTATAGCCTGCTA+TGG + chr7_4:3746886-3746905 Msa1135910:intron 35.0%
TGGTATTTATAGCCTGCTAT+GGG + chr7_4:3746887-3746906 Msa1135910:intron 35.0%
! TTTAGAATGGCCCTTCAAAA+TGG - chr7_4:3747057-3747076 None:intergenic 35.0%
!! ATTTTGAAGGGCCATTCTAA+AGG + chr7_4:3747056-3747075 Msa1135910:intron 35.0%
!! TTTTGAAGGGCCATTCTAAA+GGG + chr7_4:3747057-3747076 Msa1135910:intron 35.0%
! GTTGTAACTTTGTAAGTTGG+AGG + chr7_4:3747370-3747389 Msa1135910:intron 35.0%
TGCAGTAGACTCATAATCAT+TGG - chr7_4:3747493-3747512 None:intergenic 35.0%
! CTACTGCATATGTGACTTTT+AGG + chr7_4:3747505-3747524 Msa1135910:CDS 35.0%
!!! GCATGAAATTTTTGGTGTTG+TGG + chr7_4:3747682-3747701 Msa1135910:intron 35.0%
TGACTTGATACAGCAAAACA+GGG - chr7_4:3747780-3747799 None:intergenic 35.0%
CTCAAGTCAATATATGAACG+AGG + chr7_4:3748024-3748043 Msa1135910:intron 35.0%
TCAGTCCTGAACAACATTTA+TGG + chr7_4:3748267-3748286 Msa1135910:intron 35.0%
ACCCATTGTAGAGCTATATT+TGG - chr7_4:3748376-3748395 None:intergenic 35.0%
! AAATATAGCTCTACAATGGG+TGG + chr7_4:3748375-3748394 Msa1135910:intron 35.0%
! GTTTCAGGGATCAATGATTT+TGG + chr7_4:3748516-3748535 Msa1135910:intron 35.0%
AGCGTGAAATAGAAATGCAT+TGG - chr7_4:3748543-3748562 None:intergenic 35.0%
AATGCATTTCTATTTCACGC+TGG + chr7_4:3748542-3748561 Msa1135910:CDS 35.0%
ATGCATTTCTATTTCACGCT+GGG + chr7_4:3748543-3748562 Msa1135910:CDS 35.0%
ATACAGATGACAGCAATAAC+TGG + chr7_4:3748572-3748591 Msa1135910:CDS 35.0%
TCGGAGATATTCATAAACCA+TGG + chr7_4:3748712-3748731 Msa1135910:intron 35.0%
GTGATCTCAAATTGTTACCA+TGG - chr7_4:3748732-3748751 None:intergenic 35.0%
TATTGCTCTTCTCTTATGAG+AGG - chr7_4:3748934-3748953 None:intergenic 35.0%
ACATGTCCTAAGTTACTCTT+GGG - chr7_4:3749098-3749117 None:intergenic 35.0%
AACATGTCCTAAGTTACTCT+TGG - chr7_4:3749099-3749118 None:intergenic 35.0%
!! CAATTGACTATGGCCTTATT+TGG - chr7_4:3749330-3749349 None:intergenic 35.0%
AAACATACCTTCTTCCATGA+TGG + chr7_4:3749497-3749516 Msa1135910:intron 35.0%
TGAGAAAGAACGAACATGTA+AGG - chr7_4:3749562-3749581 None:intergenic 35.0%
TGTCATCTGTCATCAATAAC+AGG - chr7_4:3749588-3749607 None:intergenic 35.0%
CAGATGACAAAGAAACCTTA+TGG + chr7_4:3749599-3749618 Msa1135910:intron 35.0%
ACTGTTAATAACGATCGAAC+AGG - chr7_4:3749644-3749663 None:intergenic 35.0%
ACTTCTGACACTAAATCCTT+AGG + chr7_4:3749679-3749698 Msa1135910:intron 35.0%
!!! CATTGTTTTGACAACCTGTT+GGG - chr7_4:3749886-3749905 None:intergenic 35.0%
GTCAAAACAATGGTAGCTAA+AGG + chr7_4:3749894-3749913 Msa1135910:CDS 35.0%
AGGAGAAGAGAAACAGAGAA+GGG - chr7_4:3744228-3744247 None:intergenic 40.0%
TTGGGGACATCAATGTGTTT+AGG + chr7_4:3744632-3744651 Msa1135910:intron 40.0%
TGACAGATTGAATACGTAGC+TGG - chr7_4:3744917-3744936 None:intergenic 40.0%
ATGAAACAATCGCGTAGATG+TGG + chr7_4:3745303-3745322 Msa1135910:intron 40.0%
ACACCTTCAACTTGAAGTGT+CGG + chr7_4:3745436-3745455 Msa1135910:intron 40.0%
TCACAGATGGAGCAATCATA+GGG + chr7_4:3745547-3745566 Msa1135910:intron 40.0%
GTAACATTAACGTTCCTTGC+AGG + chr7_4:3745608-3745627 Msa1135910:intron 40.0%
! CGTGTTGATGTGATAAGGTA+AGG + chr7_4:3745868-3745887 Msa1135910:intron 40.0%
TACATTATCAGGTGTGTGTG+TGG - chr7_4:3746048-3746067 None:intergenic 40.0%
! AGATGGTTAATGGATACACC+GGG + chr7_4:3746289-3746308 Msa1135910:intron 40.0%
GATTAATGAGTTTCAACGCC+CGG - chr7_4:3746310-3746329 None:intergenic 40.0%
AAAGTACGGTAAGGGATACT+AGG + chr7_4:3746802-3746821 Msa1135910:intron 40.0%
AAGTACGGTAAGGGATACTA+GGG + chr7_4:3746803-3746822 Msa1135910:intron 40.0%
GATTATTGGATGCCTTGAGA+AGG + chr7_4:3746854-3746873 Msa1135910:intron 40.0%
!! CAGGGGTATTTGTGTACTTT+CGG + chr7_4:3746941-3746960 Msa1135910:intron 40.0%
CTGCATTACTGCTCAATGTA+AGG + chr7_4:3747547-3747566 Msa1135910:intron 40.0%
GTGACTTGATACAGCAAAAC+AGG - chr7_4:3747781-3747800 None:intergenic 40.0%
CCATCACAAACTATGAAGCA+TGG - chr7_4:3747819-3747838 None:intergenic 40.0%
! CCATGCTTCATAGTTTGTGA+TGG + chr7_4:3747816-3747835 Msa1135910:intron 40.0%
ATATGAACGAGGTGAGTTAG+AGG + chr7_4:3748035-3748054 Msa1135910:intron 40.0%
! CAAGTCCTTTTCCAAAGGAA+TGG + chr7_4:3748069-3748088 Msa1135910:intron 40.0%
!! AGAAGACATAGTGGATGACA+TGG + chr7_4:3748133-3748152 Msa1135910:intron 40.0%
AAATAGACTCCGCCTATGAA+TGG + chr7_4:3748226-3748245 Msa1135910:intron 40.0%
GAGCTATATTTGGAAAGGAC+AGG - chr7_4:3748366-3748385 None:intergenic 40.0%
!!! TTTTGGTCCAATGCTGTTTC+AGG + chr7_4:3748501-3748520 Msa1135910:intron 40.0%
!! TTTGGTCCAATGCTGTTTCA+GGG + chr7_4:3748502-3748521 Msa1135910:intron 40.0%
ATTGATCCCTGAAACAGCAT+TGG - chr7_4:3748511-3748530 None:intergenic 40.0%
GTAATACTGTCTTCATGGTG+TGG - chr7_4:3748610-3748629 None:intergenic 40.0%
!! GTAAGAGAGCATTCTAAGGA+AGG - chr7_4:3748656-3748675 None:intergenic 40.0%
CTCTTTCCCAAGAGTAACTT+AGG + chr7_4:3749089-3749108 Msa1135910:intron 40.0%
TACACACTTGTGAGACTGTT+TGG + chr7_4:3749151-3749170 Msa1135910:intron 40.0%
ACACACTTGTGAGACTGTTT+GGG + chr7_4:3749152-3749171 Msa1135910:intron 40.0%
!!! TTACGTTGGCCTTTTGTAGT+TGG + chr7_4:3749365-3749384 Msa1135910:intron 40.0%
GTACACAAGCCAACTACAAA+AGG - chr7_4:3749377-3749396 None:intergenic 40.0%
ACTTCTACTCTCTACCATCA+TGG - chr7_4:3749514-3749533 None:intergenic 40.0%
! GACAAGTTTATTTCTTCCCC+TGG + chr7_4:3749843-3749862 Msa1135910:CDS 40.0%
!!! CCATTGTTTTGACAACCTGT+TGG - chr7_4:3749887-3749906 None:intergenic 40.0%
CCAACAGGTTGTCAAAACAA+TGG + chr7_4:3749884-3749903 Msa1135910:CDS 40.0%
GAGCAAAGATGCATTTGTGA+TGG + chr7_4:3749926-3749945 Msa1135910:CDS 40.0%
ATCATCTACAGCAGCAAACA+AGG + chr7_4:3749977-3749996 Msa1135910:CDS 40.0%
GCTGAACTCAGCAACAAAAT+TGG + chr7_4:3750002-3750021 Msa1135910:CDS 40.0%
TTCGGATATGTTATCTCGTG+CGG + chr7_4:3750226-3750245 Msa1135910:CDS 40.0%
!! TTGATGATGACCCAAATCAG+CGG - chr7_4:3750261-3750280 None:intergenic 40.0%
ACCAGATAAGTAGCCGTATA+CGG - chr7_4:3750370-3750389 None:intergenic 40.0%
AATCCATGATGAGCAGCAAT+TGG + chr7_4:3750418-3750437 Msa1135910:three_prime_UTR 40.0%
AAACCAATTGCTGCTCATCA+TGG - chr7_4:3750424-3750443 None:intergenic 40.0%
GAGGAGAAGAGAAACAGAGA+AGG - chr7_4:3744229-3744248 None:intergenic 45.0%
CAGTGTCATGTGTGTGTTGT+TGG + chr7_4:3744852-3744871 Msa1135910:intron 45.0%
CTCACCAACTGAGCAATCAA+AGG + chr7_4:3744986-3745005 Msa1135910:intron 45.0%
CTGCATAACTGTCAGTGTCA+TGG - chr7_4:3745336-3745355 None:intergenic 45.0%
TGACAGTTATGCAGAGACAC+CGG + chr7_4:3745342-3745361 Msa1135910:intron 45.0%
!! TATGTGTTGGTGCCAAACAC+CGG + chr7_4:3745402-3745421 Msa1135910:intron 45.0%
TGATTGCTCCATCTGTGAGA+CGG - chr7_4:3745545-3745564 None:intergenic 45.0%
CTCACAGATGGAGCAATCAT+AGG + chr7_4:3745546-3745565 Msa1135910:intron 45.0%
AAAAAGAGGGTGATCCTGCA+AGG - chr7_4:3745625-3745644 None:intergenic 45.0%
ATTTCAGCAGTATAGCCACC+GGG - chr7_4:3745778-3745797 None:intergenic 45.0%
GATTTCAGCAGTATAGCCAC+CGG - chr7_4:3745779-3745798 None:intergenic 45.0%
ATCATTCTCTGTCGCTCTTG+GGG - chr7_4:3745812-3745831 None:intergenic 45.0%
CATCATTCTCTGTCGCTCTT+GGG - chr7_4:3745813-3745832 None:intergenic 45.0%
ACATCATTCTCTGTCGCTCT+TGG - chr7_4:3745814-3745833 None:intergenic 45.0%
GCCTCTTCCGACTTAAATTC+AGG + chr7_4:3746128-3746147 Msa1135910:intron 45.0%
GCCTGAATTTAAGTCGGAAG+AGG - chr7_4:3746132-3746151 None:intergenic 45.0%
TGGTACGCAGGTCAAATATG+TGG - chr7_4:3746395-3746414 None:intergenic 45.0%
ATGAAGTTACGTTGGTACGC+AGG - chr7_4:3746407-3746426 None:intergenic 45.0%
GGTTGATTGCGTTCAGTAGA+TGG - chr7_4:3746587-3746606 None:intergenic 45.0%
TTTATAGCCTGCTATGGGCT+TGG + chr7_4:3746892-3746911 Msa1135910:intron 45.0%
TTATAGCCTGCTATGGGCTT+GGG + chr7_4:3746893-3746912 Msa1135910:intron 45.0%
! CACAAATACCCCTGTTGCTT+GGG - chr7_4:3746935-3746954 None:intergenic 45.0%
ACACAAATACCCCTGTTGCT+TGG - chr7_4:3746936-3746955 None:intergenic 45.0%
GGGTATTTGTGTACTTTCGG+CGG + chr7_4:3746944-3746963 Msa1135910:intron 45.0%
! AGGCTTCTAGAAACTGAGGA+AGG + chr7_4:3746974-3746993 Msa1135910:intron 45.0%
! CTTCTAGAAACTGAGGAAGG+CGG + chr7_4:3746977-3746996 Msa1135910:intron 45.0%
ATGGCCCTTCAAAATGGTCT+GGG - chr7_4:3747051-3747070 None:intergenic 45.0%
AATGGCCCTTCAAAATGGTC+TGG - chr7_4:3747052-3747071 None:intergenic 45.0%
!! AGGCTCTAAGCCCTTTAGAA+TGG - chr7_4:3747070-3747089 None:intergenic 45.0%
TAAAGGGCTTAGAGCCTTTC+TGG + chr7_4:3747073-3747092 Msa1135910:intron 45.0%
! TGGAGGGCTTTTAAGCCTTT+AGG + chr7_4:3747093-3747112 Msa1135910:intron 45.0%
! TGTAAGTTGGAGGGCCTATA+TGG + chr7_4:3747380-3747399 Msa1135910:intron 45.0%
!! TTTTAGGGATGCTTATGCCC+TGG + chr7_4:3747521-3747540 Msa1135910:CDS 45.0%
GAGCAGTAATGCAGTTTCCA+GGG - chr7_4:3747541-3747560 None:intergenic 45.0%
TGAGCAGTAATGCAGTTTCC+AGG - chr7_4:3747542-3747561 None:intergenic 45.0%
TGTCCAACTCACCAATGTTG+TGG + chr7_4:3747738-3747757 Msa1135910:intron 45.0%
CAACCACAACATTGGTGAGT+TGG - chr7_4:3747744-3747763 None:intergenic 45.0%
ACTCACCAATGTTGTGGTTG+TGG + chr7_4:3747744-3747763 Msa1135910:intron 45.0%
CCATTCTTTCGGTCCACATT+TGG - chr7_4:3747916-3747935 None:intergenic 45.0%
CCAAATGTGGACCGAAAGAA+TGG + chr7_4:3747913-3747932 Msa1135910:intron 45.0%
ATGTGGACCGAAAGAATGGT+CGG + chr7_4:3747917-3747936 Msa1135910:intron 45.0%
ACTCACTCCGACCATTCTTT+CGG - chr7_4:3747927-3747946 None:intergenic 45.0%
! GTACAGTAGCAAGAGTACGT+TGG + chr7_4:3747970-3747989 Msa1135910:intron 45.0%
! TCACGCCATTCCTTTGGAAA+AGG - chr7_4:3748077-3748096 None:intergenic 45.0%
! TGGCGTGAGAGTAGTGTTTT+CGG + chr7_4:3748089-3748108 Msa1135910:intron 45.0%
ATCAGATGAATCGCACGTTC+AGG + chr7_4:3748174-3748193 Msa1135910:intron 45.0%
CAAACCAGACCATTCATAGG+CGG - chr7_4:3748238-3748257 None:intergenic 45.0%
! GCCTATGAATGGTCTGGTTT+GGG + chr7_4:3748237-3748256 Msa1135910:intron 45.0%
! CCTCTAGGAGATACAGAAAC+TGG - chr7_4:3748884-3748903 None:intergenic 45.0%
CCAGTTTCTGTATCTCCTAG+AGG + chr7_4:3748881-3748900 Msa1135910:intron 45.0%
CTGTGAACTGAAAAGCCTCT+AGG - chr7_4:3748899-3748918 None:intergenic 45.0%
CTCTCTACCATCATGGAAGA+AGG - chr7_4:3749507-3749526 None:intergenic 45.0%
GAAACCTTATGGGAGAGCTA+AGG + chr7_4:3749610-3749629 Msa1135910:intron 45.0%
! ATGACCTTAGCTCTCCCATA+AGG - chr7_4:3749617-3749636 None:intergenic 45.0%
TCTTCGACAGGATATGCACA+TGG + chr7_4:3749821-3749840 Msa1135910:intron 45.0%
CAAATCAGCTGTGACCGTAA+CGG + chr7_4:3750100-3750119 Msa1135910:CDS 45.0%
AAATCAGCTGTGACCGTAAC+GGG + chr7_4:3750101-3750120 Msa1135910:CDS 45.0%
TATAGCTGTTGTCCCCGTTA+CGG - chr7_4:3750117-3750136 None:intergenic 45.0%
ATAGTTGCGGCAACAGTTAC+CGG + chr7_4:3750134-3750153 Msa1135910:CDS 45.0%
TTTCGCGAAGTAGCTGCTAT+TGG - chr7_4:3750192-3750211 None:intergenic 45.0%
AATAGCAGCTACTTCGCGAA+AGG + chr7_4:3750191-3750210 Msa1135910:CDS 45.0%
! GAAAGGAGCTCTTTGGGTTT+CGG + chr7_4:3750208-3750227 Msa1135910:CDS 45.0%
ACCGTATACGGCTACTTATC+TGG + chr7_4:3750366-3750385 Msa1135910:three_prime_UTR 45.0%
ACACATGACACTGATGCACG+TGG - chr7_4:3744845-3744864 None:intergenic 50.0%
GGTGTTTGGCACCAACACAT+AGG - chr7_4:3745403-3745422 None:intergenic 50.0%
TGTGATGCATCTCCGGTGTT+TGG - chr7_4:3745417-3745436 None:intergenic 50.0%
! GAAGGTGTGTGATGCATCTC+CGG - chr7_4:3745424-3745443 None:intergenic 50.0%
!! GCACCGACACTTCAAGTTGA+AGG - chr7_4:3745442-3745461 None:intergenic 50.0%
ACAATGCACCGTCTCACAGA+TGG + chr7_4:3745534-3745553 Msa1135910:intron 50.0%
AGTCGGAAGAGGCAATGTGA+AGG - chr7_4:3746121-3746140 None:intergenic 50.0%
ATGCCTTGAGAAGGCTCTCA+AGG + chr7_4:3746863-3746882 Msa1135910:intron 50.0%
CATCCTTGAGAGCCTTCTCA+AGG - chr7_4:3746869-3746888 None:intergenic 50.0%
CTTGAGAAGGCTCTCAAGGA+TGG + chr7_4:3746867-3746886 Msa1135910:intron 50.0%
TTGCTTGGTTCCCAAGCAAC+AGG + chr7_4:3746922-3746941 Msa1135910:intron 50.0%
TGCTTGGTTCCCAAGCAACA+GGG + chr7_4:3746923-3746942 Msa1135910:intron 50.0%
! CTCAGTTTCTAGAAGCCTCG+AGG - chr7_4:3746972-3746991 None:intergenic 50.0%
! CTCGAGGCTTCTAGAAACTG+AGG + chr7_4:3746970-3746989 Msa1135910:intron 50.0%
GGCTTAAAAGCCCTCCAGAA+AGG - chr7_4:3747090-3747109 None:intergenic 50.0%
CAACGCCACAACCACAACAT+TGG - chr7_4:3747752-3747771 None:intergenic 50.0%
GAGTAGCAGACGTGTGTGTT+AGG + chr7_4:3747943-3747962 Msa1135910:intron 50.0%
TAGCAGACGTGTGTGTTAGG+CGG + chr7_4:3747946-3747965 Msa1135910:intron 50.0%
! CAGTAGCAAGAGTACGTTGG+CGG + chr7_4:3747973-3747992 Msa1135910:intron 50.0%
! AGTAGCAAGAGTACGTTGGC+GGG + chr7_4:3747974-3747993 Msa1135910:intron 50.0%
CTACTCTCACGCCATTCCTT+TGG - chr7_4:3748083-3748102 None:intergenic 50.0%
! CGTGAGAGTAGTGTTTTCGG+CGG + chr7_4:3748092-3748111 Msa1135910:intron 50.0%
! GTGAGAGTAGTGTTTTCGGC+GGG + chr7_4:3748093-3748112 Msa1135910:intron 50.0%
AGTGGATGACATGGCGTGAT+TGG + chr7_4:3748142-3748161 Msa1135910:intron 50.0%
CGCCTATGAATGGTCTGGTT+TGG + chr7_4:3748236-3748255 Msa1135910:intron 50.0%
GCCCAAACCAGACCATTCAT+AGG - chr7_4:3748241-3748260 None:intergenic 50.0%
TGTTGTTCAGGACTGAGCCA+AGG - chr7_4:3748263-3748282 None:intergenic 50.0%
AAGAAGCGACGCATCAAGAC+AGG - chr7_4:3749401-3749420 None:intergenic 50.0%
CATAGTCAGTGCTTCTCCAG+GGG - chr7_4:3749862-3749881 None:intergenic 50.0%
CCATAGTCAGTGCTTCTCCA+GGG - chr7_4:3749863-3749882 None:intergenic 50.0%
CGTTACGGTCACAGCTGATT+TGG - chr7_4:3750102-3750121 None:intergenic 50.0%
AATCAGCTGTGACCGTAACG+GGG + chr7_4:3750102-3750121 Msa1135910:CDS 50.0%
GGGGACAACAGCTATAGTTG+CGG + chr7_4:3750121-3750140 Msa1135910:CDS 50.0%
TAGTTGCGGCAACAGTTACC+GGG + chr7_4:3750135-3750154 Msa1135910:CDS 50.0%
ACTTCGCGAAAGGAGCTCTT+TGG + chr7_4:3750201-3750220 Msa1135910:CDS 50.0%
CTTCGCGAAAGGAGCTCTTT+GGG + chr7_4:3750202-3750221 Msa1135910:CDS 50.0%
!! GCGAAATCTGCCGCTGATTT+GGG + chr7_4:3750248-3750267 Msa1135910:CDS 50.0%
CCTGCTATGGGCTTGGGTTT+CGG + chr7_4:3746899-3746918 Msa1135910:intron 55.0%
GCTTGGTTCCCAAGCAACAG+GGG + chr7_4:3746924-3746943 Msa1135910:intron 55.0%
! GGCGCCCAGACCATTTTGAA+GGG + chr7_4:3747044-3747063 Msa1135910:intron 55.0%
AGGGCTTAGAGCCTTTCTGG+AGG + chr7_4:3747076-3747095 Msa1135910:intron 55.0%
GGGCTTAGAGCCTTTCTGGA+GGG + chr7_4:3747077-3747096 Msa1135910:intron 55.0%
! GTAGCAAGAGTACGTTGGCG+GGG + chr7_4:3747975-3747994 Msa1135910:intron 55.0%
GGATGACATGGCGTGATTGG+CGG + chr7_4:3748145-3748164 Msa1135910:intron 55.0%
GACTCCGCCTATGAATGGTC+TGG + chr7_4:3748231-3748250 Msa1135910:intron 55.0%
!! GAATGGTCTGGTTTGGGCCT+TGG + chr7_4:3748243-3748262 Msa1135910:intron 55.0%
!! CCCTGGAGAAGCACTGACTA+TGG + chr7_4:3749860-3749879 Msa1135910:CDS 55.0%
GCCATAGTCAGTGCTTCTCC+AGG - chr7_4:3749864-3749883 None:intergenic 55.0%
!! AGCACTGACTATGGCCCAAC+AGG + chr7_4:3749869-3749888 Msa1135910:CDS 55.0%
AGTTACCGGGAGAGCAGCTA+TGG + chr7_4:3750148-3750167 Msa1135910:CDS 55.0%
! GGCGAAATCTGCCGCTGATT+TGG + chr7_4:3750247-3750266 Msa1135910:CDS 55.0%
CCGAAACCCAAGCCCATAGC+AGG - chr7_4:3746902-3746921 None:intergenic 60.0%
GGGCTTGGGTTTCGGTTGCT+TGG + chr7_4:3746907-3746926 Msa1135910:intron 60.0%
GTACTTTCGGCGGTTCCTCG+AGG + chr7_4:3746954-3746973 Msa1135910:intron 60.0%
GCCTAGGCGCGCTCATCTTA+GGG - chr7_4:3747005-3747024 None:intergenic 60.0%
! GGGCGCCCAGACCATTTTGA+AGG + chr7_4:3747043-3747062 Msa1135910:intron 60.0%
! CAAGAGTACGTTGGCGGGGA+TGG + chr7_4:3747979-3747998 Msa1135910:intron 60.0%
AGCAGCCATAGCTGCTCTCC+CGG - chr7_4:3750156-3750175 None:intergenic 60.0%
GCCCTAAGATGAGCGCGCCT+AGG + chr7_4:3747001-3747020 Msa1135910:intron 65.0%
GGCCTAGGCGCGCTCATCTT+AGG - chr7_4:3747006-3747025 None:intergenic 65.0%
GGGAGAGCAGCTATGGCTGC+TGG + chr7_4:3750155-3750174 Msa1135910:CDS 65.0%
ATGAGCGCGCCTAGGCCTCG+AGG + chr7_4:3747009-3747028 Msa1135910:intron 70.0%
TGAGCGCGCCTAGGCCTCGA+GGG + chr7_4:3747010-3747029 Msa1135910:intron 70.0%
CAGAAGGGCCCTCGAGGCCT+AGG - chr7_4:3747021-3747040 None:intergenic 70.0%
CTAGGCCTCGAGGGCCCTTC+TGG + chr7_4:3747019-3747038 Msa1135910:intron 70.0%
GCCTCGAGGGCCCTTCTGGA+GGG + chr7_4:3747023-3747042 Msa1135910:intron 70.0%
GGTCTGGGCGCCCTCCAGAA+GGG - chr7_4:3747036-3747055 None:intergenic 70.0%
TGGTCTGGGCGCCCTCCAGA+AGG - chr7_4:3747037-3747056 None:intergenic 70.0%
GGCCTCGAGGGCCCTTCTGG+AGG + chr7_4:3747022-3747041 Msa1135910:intron 75.0%
GCCCTCCAGAAGGGCCCTCG+AGG - chr7_4:3747027-3747046 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 3744209 3750607 3744209 ID=Msa1135910;Name=Msa1135910
chr7_4 mRNA 3744209 3750607 3744209 ID=Msa1135910-mRNA-1;Parent=Msa1135910;Name=Msa1135910-mRNA-1;_AED=0.02;_eAED=0.02;_QI=385|1|1|1|0.75|0.6|5|318|255
chr7_4 exon 3744209 3744521 3744209 ID=Msa1135910-mRNA-1:exon:1056;Parent=Msa1135910-mRNA-1
chr7_4 exon 3745697 3745884 3745697 ID=Msa1135910-mRNA-1:exon:1057;Parent=Msa1135910-mRNA-1
chr7_4 exon 3747488 3747563 3747488 ID=Msa1135910-mRNA-1:exon:1058;Parent=Msa1135910-mRNA-1
chr7_4 exon 3748523 3748639 3748523 ID=Msa1135910-mRNA-1:exon:1059;Parent=Msa1135910-mRNA-1
chr7_4 exon 3749831 3750607 3749831 ID=Msa1135910-mRNA-1:exon:1060;Parent=Msa1135910-mRNA-1
chr7_4 five_prime_UTR 3744209 3744521 3744209 ID=Msa1135910-mRNA-1:five_prime_utr;Parent=Msa1135910-mRNA-1
chr7_4 five_prime_UTR 3745697 3745768 3745697 ID=Msa1135910-mRNA-1:five_prime_utr;Parent=Msa1135910-mRNA-1
chr7_4 CDS 3745769 3745884 3745769 ID=Msa1135910-mRNA-1:cds;Parent=Msa1135910-mRNA-1
chr7_4 CDS 3747488 3747563 3747488 ID=Msa1135910-mRNA-1:cds;Parent=Msa1135910-mRNA-1
chr7_4 CDS 3748523 3748639 3748523 ID=Msa1135910-mRNA-1:cds;Parent=Msa1135910-mRNA-1
chr7_4 CDS 3749831 3750289 3749831 ID=Msa1135910-mRNA-1:cds;Parent=Msa1135910-mRNA-1
chr7_4 three_prime_UTR 3750290 3750607 3750290 ID=Msa1135910-mRNA-1:three_prime_utr;Parent=Msa1135910-mRNA-1
Gene Sequence

>Msa1135910

ATGTATCCCGGTGGCTATACTGCTGAAATCACAAACTTAACCCCAAGAGCGACAGAGAATGATGTGCAGAACTTTTTTGAATACTGTGGTGTAATTGAACGTGTTGATGTGATAAGATCCAATGATTATGAGTCTACTGCATATGTGACTTTTAGGGATGCTTATGCCCTGGAAACTGCATTACTGCTCAATGGATCAATGATTTTGGACCAATGCATTTCTATTTCACGCTGGGAAACTTATACAGATGACAGCAATAACTGGAACAATCATACACCACACCATGAAGACAGTATTACATACTCACAAGATATGCACATGGACAAGTTTATTTCTTCCCCTGGAGAAGCACTGACTATGGCCCAACAGGTTGTCAAAACAATGGTAGCTAAAGGATTTGTGCTGAGCAAAGATGCATTTGTGATGGCAAAAGCTTTTGACGAATCGCGCAGTGTATCATCTACAGCAGCAAACAAGGTTGCTGAACTCAGCAACAAAATTGGTTTGACTGAAACCATAAATTCAGGCATTGAAAGATTTAAATATGTGGATGAAAACTATCATGTTACAGATATCACCAAATCAGCTGTGACCGTAACGGGGACAACAGCTATAGTTGCGGCAACAGTTACCGGGAGAGCAGCTATGGCTGCTGGTAATGCTATAGCCAATAGCAGCTACTTCGCGAAAGGAGCTCTTTGGGTTTCGGATATGTTATCTCGTGCGGCGAAATCTGCCGCTGATTTGGGTCATCATCAAAACAACTGA

Protein sequence

>Msa1135910

MYPGGYTAEITNLTPRATENDVQNFFEYCGVIERVDVIRSNDYESTAYVTFRDAYALETALLLNGSMILDQCISISRWETYTDDSNNWNNHTPHHEDSITYSQDMHMDKFISSPGEALTMAQQVVKTMVAKGFVLSKDAFVMAKAFDESRSVSSTAANKVAELSNKIGLTETINSGIERFKYVDENYHVTDITKSAVTVTGTTAIVAATVTGRAAMAAGNAIANSSYFAKGALWVSDMLSRAAKSAADLGHHQNN*