AlfalfaGEDB | Msa0256770

M. sativa cultivar zhongmu-4 / Msa0256770

KEGG: K08914
GO: GO:0001101 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009635 GO:0009636 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009765 GO:0009768 GO:0009769 GO:0009941 GO:0009987 GO:0010033 GO:0010119 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0019904 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0097159 GO:0097305 GO:1901363 GO:1901700
PFAM: PF00504.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0256770	ACA47401.1	100.000	266	0	0	1	266	1	266	0.0	541

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0256770	sp\|P27489\|CB23_SOLLC	92.857	266	18	1	1	266	1	265	0.0	504

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0256770	B1P0S0	100.000	266	0	0	1	266	1	266	0.0	541

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001420	Msa0256770	0.802902	4.500783e-49	-8.615850e-47
Msa0001510	Msa0256770	0.820453	6.803572e-53	-8.615850e-47
Msa0001540	Msa0256770	0.805291	1.433010e-49	-8.615850e-47
Msa0002110	Msa0256770	0.808792	2.602535e-50	-8.615850e-47
Msa0002690	Msa0256770	0.893227	7.645919e-75	-8.615850e-47
Msa0002700	Msa0256770	0.885604	7.044455e-72	-8.615850e-47
Msa0003340	Msa0256770	0.812344	4.445858e-51	-8.615850e-47
Msa0004180	Msa0256770	0.870471	1.422767e-66	-8.615850e-47
Msa0005500	Msa0256770	0.806568	7.722023e-50	-8.615850e-47
Msa0007570	Msa0256770	0.829517	4.925927e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0256770	MtrunA17_Chr2g0318521	99.248	266	0	1	1	266	1	264	0.0	533
Msa0256770	MtrunA17_Chr5g0447531	69.288	267	69	6	10	266	2	265	6.36e-126	358
Msa0256770	MtrunA17_Chr4g0051941	69.434	265	76	4	1	265	6	265	6.54e-122	348
Msa0256770	MtrunA17_Chr6g0453181	78.440	218	45	2	48	265	49	264	5.43e-120	343
Msa0256770	MtrunA17_Chr6g0453151	77.523	218	47	2	48	265	116	331	1.65e-119	345
Msa0256770	MtrunA17_Chr6g0453141	77.523	218	47	2	48	265	49	264	7.58e-119	340
Msa0256770	MtrunA17_Chr6g0453161	78.899	218	44	2	48	265	316	531	1.09e-116	344
Msa0256770	MtrunA17_Chr6g0453161	77.523	218	47	2	48	265	51	266	3.21e-115	341
Msa0256770	MtrunA17_Chr6g0464511	63.596	228	47	2	38	265	20	211	2.00e-91	269
Msa0256770	MtrunA17_Chr6g0476641	48.361	244	110	6	16	254	42	274	1.89e-58	187

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0256770	AT5G54270.1	87.925	265	30	2	4	266	1	265	2.00e-174	481
Msa0256770	AT2G05070.1	68.421	266	71	6	10	265	2	264	5.94e-124	353
Msa0256770	AT2G05100.1	68.914	267	70	6	10	266	2	265	8.33e-124	353
Msa0256770	AT3G27690.1	68.302	265	79	5	2	265	5	265	2.15e-122	350
Msa0256770	AT3G27690.2	68.302	265	79	5	2	265	37	297	2.57e-122	351
Msa0256770	AT1G29930.1	70.539	241	58	4	36	265	28	266	1.07e-117	338
Msa0256770	AT1G29920.1	70.539	241	58	4	36	265	28	266	1.24e-117	338
Msa0256770	AT1G29910.1	70.539	241	58	4	36	265	28	266	1.24e-117	338
Msa0256770	AT2G34420.1	66.543	269	73	6	8	265	2	264	1.35e-117	338
Msa0256770	AT2G34430.1	71.967	239	55	4	37	265	29	265	1.97e-117	337

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Find 98 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGCAGTTGAAAACT+TGG	0.479704	2_2:-51820331	Msa0256770:five_prime_UTR
AAACTCCTTTCCTTGGTCAA+AGG	0.511273	2_2:-51820252	Msa0256770:CDS
AAAGTGAAGGAAATCAAGAA+TGG	0.545234	2_2:-51818966	Msa0256770:CDS
AAATACCATGGTGAATCTTG+AGG	0.601532	2_2:+51820186	None:intergenic
AACATTGATGTTTAAGAACC+GGG	0.550538	2_2:+51818807	None:intergenic
AACCTCAAGAGCCCTGTTCT+TGG	0.335763	2_2:+51819496	None:intergenic
AAGGGAAATGAATTGTGGTA+TGG	0.568995	2_2:-51819641	Msa0256770:CDS
AAGGTGGTCTTGACTATTTA+GGG	0.341687	2_2:-51819178	Msa0256770:CDS
AATTCCCTGGTGATTATGGA+TGG	0.526464	2_2:-51819556	Msa0256770:CDS
AATTCTCCAGTTAAGTATGA+AGG	0.558241	2_2:+51819575	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAGTTATTTGAGTGAACTA+AGG	-	chr2_2:51818677-51818696	Msa0256770:three_prime_UTR	30.0%
AAAAGAAGCAGTTGAAAACT+TGG	-	chr2_2:51818713-51818732	Msa0256770:three_prime_UTR	30.0%
AAAACTTGGAACAAAAACCA+TGG	-	chr2_2:51818727-51818746	Msa0256770:three_prime_UTR	30.0%
AGATACAATATTAGTCACAC+AGG	+	chr2_2:51818952-51818971	None:intergenic	30.0%
ATCTTACATCATGCATAAGT+TGG	+	chr2_2:51819115-51819134	None:intergenic	30.0%
CATTGTGTTTGTGATTGTAA+AGG	-	chr2_2:51819384-51819403	Msa0256770:intron	30.0%
TTGTAAAGGGAAATGAATTG+TGG	-	chr2_2:51819398-51819417	Msa0256770:intron	30.0%
AATTCTCCAGTTAAGTATGA+AGG	+	chr2_2:51819472-51819491	None:intergenic	30.0%
TTAAATAAGCCCCAATACAA+TGG	-	chr2_2:51819582-51819601	Msa0256770:CDS	30.0%
TGAGAAAGAACCATTGTATT+GGG	+	chr2_2:51819595-51819614	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	51818663	51820403	51818663	ID=Msa0256770;Name=Msa0256770
chr2_2	mRNA	51818663	51820403	51818663	ID=Msa0256770-mRNA-1;Parent=Msa0256770;Name=Msa0256770-mRNA-1;_AED=0.08;_eAED=0.08;_QI=83\|1\|1\|1\|1\|1\|3\|155\|266
chr2_2	exon	51818663	51819327	51818663	ID=Msa0256770-mRNA-1:exon:15651;Parent=Msa0256770-mRNA-1
chr2_2	exon	51819499	51819660	51819499	ID=Msa0256770-mRNA-1:exon:15650;Parent=Msa0256770-mRNA-1
chr2_2	exon	51820192	51820403	51820192	ID=Msa0256770-mRNA-1:exon:15649;Parent=Msa0256770-mRNA-1
chr2_2	five_prime_UTR	51820321	51820403	51820321	ID=Msa0256770-mRNA-1:five_prime_utr;Parent=Msa0256770-mRNA-1
chr2_2	CDS	51820192	51820320	51820192	ID=Msa0256770-mRNA-1:cds;Parent=Msa0256770-mRNA-1
chr2_2	CDS	51819499	51819660	51819499	ID=Msa0256770-mRNA-1:cds;Parent=Msa0256770-mRNA-1
chr2_2	CDS	51818818	51819327	51818818	ID=Msa0256770-mRNA-1:cds;Parent=Msa0256770-mRNA-1
chr2_2	three_prime_UTR	51818663	51818817	51818663	ID=Msa0256770-mRNA-1:three_prime_utr;Parent=Msa0256770-mRNA-1

Gene Sequence

>Msa0256770

ATGGCATTGATGGCTGCTACAGCAAGTTCAGCAGCTGTTGTTAAACAAACTCCTTTCCTTGGTCAAAGGAAGGGAGCTGCCAACCCTCTTAGAGATGTTGTCGCCATGGGAACCTCAAGATTCACCATGGGAAATGAATTGTGGTATGGACCAGACAGAGTGAAATATTTGGGACCATTTTCAGCTCAGACTCCTTCATACTTAACTGGAGAATTCCCTGGTGATTATGGATGGGATACTGCTGGTTTATCTGCTGATCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGGTGATCCATGGAAGATGGGCTATGCTAGGAGCACTAGGATGCATCACACCAGAAGTACTTGAAAAATGGGTAAGAGTTGACTTCAAAGAACCAGTTTGGTTCAAAGCAGGATCACAAATCTTCTCAGAAGGTGGTCTTGACTATTTAGGGAACCCAAACCTTGTTCATGCACAAAGCATCTTAGCAGTACTAGGTTTCCAAGTTGTTCTAATGGGTCTTGTGGAAGGCTTTCGCATCAACGGTCTTCCTGGTGTCGGAGAGGGCAACAACCTCTACCCTGGTGGCCAATACTTTGACCCTCTTGGTCTAGCTGACGATCCAGTTACTTTCGCTGAGCTTAAAGTGAAGGAAATCAAGAATGGAAGATTGGCTATGTTTTCGATGTTTGGTTTCTTTGTTCAAGCTATTGTCACAGGTAAAGGACCTTTGGAGAATCTTTTGGATCACATTGATAACCCTGTTGCCAATAATGCTTGGGTTTATGCCACCAAGTTTGTGCCCGGTTCTTAA

Protein sequence

>Msa0256770

MALMAATASSAAVVKQTPFLGQRKGAANPLRDVVAMGTSRFTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHIDNPVANNAWVYATKFVPGS*