AlfalfaGEDB | Msa1106730

M. sativa cultivar zhongmu-4 / Msa1106730

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1106730	XP_013448931.1	91.453	117	9	1	4	120	5	120	7.28e-71	218

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1106730	sp\|O81208\|OHP1_ARATH	65.169	89	31	0	32	120	22	110	1.05e-34	118

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1106730	A0A072U1E0	91.453	117	9	1	4	120	5	120	3.48e-71	218

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa1106730	0.829953	3.856876e-55	-8.615850e-47
Msa0000800	Msa1106730	-0.828849	7.153150e-55	-8.615850e-47
Msa0001040	Msa1106730	0.835631	1.499777e-56	-8.615850e-47
Msa0001510	Msa1106730	0.913028	9.883329e-84	-8.615850e-47
Msa0001550	Msa1106730	0.805694	1.179875e-49	-8.615850e-47
Msa0002110	Msa1106730	0.918592	1.287579e-86	-8.615850e-47
Msa0002690	Msa1106730	0.915472	5.656261e-85	-8.615850e-47
Msa0002700	Msa1106730	0.903246	4.229136e-79	-8.615850e-47
Msa0003340	Msa1106730	0.886898	2.289582e-72	-8.615850e-47
Msa0004180	Msa1106730	0.926708	3.233891e-91	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1106730	MtrunA17_Chr7g0239341	91.453	117	9	1	4	120	5	120	6.70e-75	218

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1106730	AT5G02120.1	65.169	89	31	0	32	120	22	110	1.07e-35	118

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Find 48 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGCTTACACCAGAAGG+AGG	0.671074	7_3:+47233525	None:intergenic
AACTCTAGAGCTTGCATGAT+AGG	0.431455	7_3:-47233317	Msa1106730:CDS
AAGGAAACTCTCTTCCTGTG+AGG	0.718755	7_3:+47233567	None:intergenic
AAGGGAATACTTGAGGTGAT+TGG	0.488182	7_3:-47231139	Msa1106730:CDS
AATCCACAAGGGAATACTTG+AGG	0.628186	7_3:-47231146	Msa1106730:CDS
AATGTCAATACAATTGTAAA+TGG	0.333821	7_3:-47230952	Msa1106730:three_prime_UTR
AATTTAAACCACCATTTCTT+GGG	0.388545	7_3:-47233364	Msa1106730:CDS
AATTTCCTAAGAACACATTT+TGG	0.292574	7_3:+47230876	None:intergenic
ACAGACCAGCAGCACCTCAC+AGG	0.606120	7_3:-47233581	Msa1106730:CDS
ACAGTTATCAACCATTGCCA+TGG	0.631294	7_3:-47233703	Msa1106730:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTACCATCATCATTCATCTT+AGG	-	chr7_3:47230917-47230936	Msa1106730:three_prime_UTR	30.0%
TTTGAAGGAACAAAAGTTGA+TGG	+	chr7_3:47230967-47230986	None:intergenic	30.0%
AGAAATGGTGGTTTAAATTG+AGG	+	chr7_3:47231215-47231234	None:intergenic	30.0%
CAATTTAAACCACCATTTCT+TGG	-	chr7_3:47231215-47231234	Msa1106730:intron	30.0%
TTACAAAGACTGCTGAAATA+TGG	-	chr7_3:47231240-47231259	Msa1106730:intron	30.0%
ACATTGAGATTAGATGGAAA+AGG	-	chr7_3:47231432-47231451	Msa1106730:intron	30.0%
AAACAGGAGAAAAAGTTAAC+TGG	+	chr7_3:47231698-47231717	None:intergenic	30.0%
TAAAAATGGATGGTTAGGAT+TGG	+	chr7_3:47231730-47231749	None:intergenic	30.0%
TGATCTAAAAATGGATGGTT+AGG	+	chr7_3:47231735-47231754	None:intergenic	30.0%
TATAACAACAAAGCAAAGCA+AGG	+	chr7_3:47231948-47231967	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	47230755	47233847	47230755	ID=Msa1106730;Name=Msa1106730
chr7_3	mRNA	47230755	47233847	47230755	ID=Msa1106730-mRNA-1;Parent=Msa1106730;Name=Msa1106730-mRNA-1;_AED=0.01;_eAED=0.01;_QI=141\|1\|1\|1\|1\|1\|3\|347\|120
chr7_3	exon	47230755	47231170	47230755	ID=Msa1106730-mRNA-1:exon:9635;Parent=Msa1106730-mRNA-1
chr7_3	exon	47233289	47233411	47233289	ID=Msa1106730-mRNA-1:exon:9634;Parent=Msa1106730-mRNA-1
chr7_3	exon	47233536	47233847	47233536	ID=Msa1106730-mRNA-1:exon:9633;Parent=Msa1106730-mRNA-1
chr7_3	five_prime_UTR	47233707	47233847	47233707	ID=Msa1106730-mRNA-1:five_prime_utr;Parent=Msa1106730-mRNA-1
chr7_3	CDS	47233536	47233706	47233536	ID=Msa1106730-mRNA-1:cds;Parent=Msa1106730-mRNA-1
chr7_3	CDS	47233289	47233411	47233289	ID=Msa1106730-mRNA-1:cds;Parent=Msa1106730-mRNA-1
chr7_3	CDS	47231102	47231170	47231102	ID=Msa1106730-mRNA-1:cds;Parent=Msa1106730-mRNA-1
chr7_3	three_prime_UTR	47230755	47231101	47230755	ID=Msa1106730-mRNA-1:three_prime_utr;Parent=Msa1106730-mRNA-1

Gene Sequence	>Msa1106730 ATGGCTACCTCATCAACCAAATTACCATCATCATTCATCTTAGGAACCCCTTCACTTCACTCTACAAACCATCAACTTTTGTTCCTTCAAAACCATAACTTGAACAGACCAGCAGCACCTCACAGGAAGAGAGTTTCCTTAACTGTTCAAGCAGTAAAACCTCCTTCTGGTGTTGAATTCCCAAAAGTACAGCCTCAATTTAAACCACCATTTCTTGGGTTTACAAAGACTGCTGAAATATGGAACTCTAGAGCTTGCATGATAGGACTCATTGGAACCTTCATTGTAGAACTTATAATCCACAAGGGAATACTTGAGGTGATTGGACTTGAAATTGGAAAAGGCCTTGATATTCCTCTTTGA
Protein sequence	>Msa1106730 MATSSTKLPSSFILGTPSLHSTNHQLLFLQNHNLNRPAAPHRKRVSLTVQAVKPPSGVEFPKVQPQFKPPFLGFTKTAEIWNSRACMIGLIGTFIVELIIHKGILEVIGLEIGKGLDIPL*