AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1106730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1106730 MtrunA17_Chr7g0239341 91.453 117 9 1 4 120 5 120 6.70e-75 218
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1106730 AT5G02120.1 65.169 89 31 0 32 120 22 110 1.07e-35 118

Find 48 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGATTAAAAGTGAACTTT+TGG 0.241714 7_3:+47230821 None:intergenic
TTAAATTGAGGCTGTACTTT+TGG 0.250391 7_3:+47233380 None:intergenic
GATGAATGATGATGGTAATT+TGG 0.273708 7_3:+47233668 None:intergenic
CAATTTAAACCACCATTTCT+TGG 0.280965 7_3:-47233365 Msa1106730:CDS
AATTTCCTAAGAACACATTT+TGG 0.292574 7_3:+47230876 None:intergenic
TTACCATCATCATTCATCTT+AGG 0.293810 7_3:-47233663 Msa1106730:CDS
CTGCTGGTCTGTTCAAGTTA+TGG 0.307312 7_3:+47233592 None:intergenic
TTACAAAGACTGCTGAAATA+TGG 0.315164 7_3:-47233340 Msa1106730:CDS
TGATACCAAAATGTGTTCTT+AGG 0.323210 7_3:-47230881 Msa1106730:three_prime_UTR
AATGTCAATACAATTGTAAA+TGG 0.333821 7_3:-47230952 Msa1106730:three_prime_UTR
GTAGCTAGTTCTTCACTGTT+GGG 0.358443 7_3:+47233724 None:intergenic
CTCTTCCTGTGAGGTGCTGC+TGG 0.363766 7_3:+47233576 None:intergenic
TTTGAAGGAACAAAAGTTGA+TGG 0.364124 7_3:+47233616 None:intergenic
GAGGTGATTGGACTTGAAAT+TGG 0.366463 7_3:-47231127 Msa1106730:CDS
AATTTAAACCACCATTTCTT+GGG 0.388545 7_3:-47233364 Msa1106730:CDS
AACTCTAGAGCTTGCATGAT+AGG 0.431455 7_3:-47233317 Msa1106730:CDS
TGTAGCTAGTTCTTCACTGT+TGG 0.434682 7_3:+47233723 None:intergenic
GTGTGTTTGGAAGGTGGGGT+TGG 0.453559 7_3:+47233802 None:intergenic
TGTTCTTAGGAAATTACCTT+AGG 0.458111 7_3:-47230868 Msa1106730:three_prime_UTR
ATTGGACTTGAAATTGGAAA+AGG 0.466493 7_3:-47231121 Msa1106730:CDS
GTCTTTGTAAACCCAAGAAA+TGG 0.473103 7_3:+47233353 None:intergenic
AGAAATGGTGGTTTAAATTG+AGG 0.476737 7_3:+47233368 None:intergenic
AAGGGAATACTTGAGGTGAT+TGG 0.488182 7_3:-47231139 Msa1106730:CDS
CAAGCAGTAAAACCTCCTTC+TGG 0.490122 7_3:-47233537 Msa1106730:CDS
GCTTGCATGATAGGACTCAT+TGG 0.494425 7_3:-47233308 Msa1106730:CDS
ATTACCTTAGGAGTTGTCTC+TGG 0.513270 7_3:-47230856 Msa1106730:three_prime_UTR
ATGTTGCTTGATTTAGTACA+TGG 0.521063 7_3:-47230928 Msa1106730:three_prime_UTR
TAGCTAGTTCTTCACTGTTG+GGG 0.525958 7_3:+47233725 None:intergenic
ACTCACAAGTTCTACAATGA+AGG 0.544218 7_3:+47233283 None:intergenic
ATGATCAAAGAGGAATATCA+AGG 0.554694 7_3:+47231098 None:intergenic
GGAAGGTGGGGTTGGCACAA+AGG 0.557853 7_3:+47233810 None:intergenic
ATGAAATTGAATGATCAAAG+AGG 0.565873 7_3:+47231088 None:intergenic
TATAAAGTGCTTACACCAGA+AGG 0.567321 7_3:+47233522 None:intergenic
GTTCCTAAGATGAATGATGA+TGG 0.568966 7_3:+47233660 None:intergenic
TTTGGTTGATGAGGTAGCCA+TGG 0.573745 7_3:+47233686 None:intergenic
TTTGTAAACCCAAGAAATGG+TGG 0.575768 7_3:+47233356 None:intergenic
TCACCTCAAGTATTCCCTTG+TGG 0.604136 7_3:+47231143 None:intergenic
ATAGCCAGAGACAACTCCTA+AGG 0.604652 7_3:+47230852 None:intergenic
ACAGACCAGCAGCACCTCAC+AGG 0.606120 7_3:-47233581 Msa1106730:CDS
GTTTGTAGAGTGAAGTGAAG+GGG 0.621170 7_3:+47233638 None:intergenic
AATCCACAAGGGAATACTTG+AGG 0.628186 7_3:-47231146 Msa1106730:CDS
TGATGGTAATTTGGTTGATG+AGG 0.628797 7_3:+47233677 None:intergenic
ACAGTTATCAACCATTGCCA+TGG 0.631294 7_3:-47233703 Msa1106730:exon
TGGTTTGTAGAGTGAAGTGA+AGG 0.633356 7_3:+47233636 None:intergenic
TGATGAGGTAGCCATGGCAA+TGG 0.664851 7_3:+47233692 None:intergenic
AAAGTGCTTACACCAGAAGG+AGG 0.671074 7_3:+47233525 None:intergenic
AAGGAAACTCTCTTCCTGTG+AGG 0.718755 7_3:+47233567 None:intergenic
GGTTTGTAGAGTGAAGTGAA+GGG 0.731952 7_3:+47233637 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATTAAATGTTTATAAAT+GGG - chr7_3:47232729-47232748 Msa1106730:intron 10.0%
!! AAATTAAATGTTTATAAATG+GGG - chr7_3:47232730-47232749 Msa1106730:intron 10.0%
!!! TCAATTTTAACTTTTTAAAA+TGG - chr7_3:47233542-47233561 Msa1106730:CDS 10.0%
!!! TAAGTTATTTATGAAGTTTT+TGG - chr7_3:47231142-47231161 Msa1106730:CDS 15.0%
!!! ATTTGCATTTTATATGTAAT+AGG - chr7_3:47231344-47231363 Msa1106730:intron 15.0%
!!! ACAATTAATAAAATGGATTT+TGG - chr7_3:47231771-47231790 Msa1106730:intron 15.0%
!! CCATTTATAAACATTTAATT+TGG + chr7_3:47232731-47232750 None:intergenic 15.0%
!! CCAAATTAAATGTTTATAAA+TGG - chr7_3:47232728-47232747 Msa1106730:intron 15.0%
!! GTTATAAAATAACAAATAGT+TGG - chr7_3:47233076-47233095 Msa1106730:intron 15.0%
!!! TAATTTTTATAAGCTTATAG+TGG + chr7_3:47233238-47233257 None:intergenic 15.0%
!!! TATGAAGTTTTTGGATTATT+TGG - chr7_3:47231151-47231170 Msa1106730:CDS 20.0%
!!! ATGAAGTTTTTGGATTATTT+GGG - chr7_3:47231152-47231171 Msa1106730:intron 20.0%
!! TGCACAAAATTAAGAATAAA+TGG - chr7_3:47231400-47231419 Msa1106730:intron 20.0%
!! ATAAAAACATTGAGATTAGA+TGG - chr7_3:47231426-47231445 Msa1106730:intron 20.0%
!! AATACAATGTAAATGTATAG+AGG - chr7_3:47231522-47231541 Msa1106730:intron 20.0%
!!! TAAACTTTGATTTTAATCTC+GGG + chr7_3:47231548-47231567 None:intergenic 20.0%
!!! GTAAACTTTGATTTTAATCT+CGG + chr7_3:47231549-47231568 None:intergenic 20.0%
!! AAATCAAAGTTTACTAATGT+TGG - chr7_3:47231555-47231574 Msa1106730:intron 20.0%
!! ATGAAACTAATATGAAAAGT+TGG + chr7_3:47232037-47232056 None:intergenic 20.0%
!!! ACTTTTCATATTAGTTTCAT+AGG - chr7_3:47232037-47232056 Msa1106730:intron 20.0%
!! GTAGTGTTTGATAAAATTAA+CGG - chr7_3:47233178-47233197 Msa1106730:intron 20.0%
!!! TTGAATGAAAAAGATCTTTT+TGG + chr7_3:47233302-47233321 None:intergenic 20.0%
!! AGAATAATGTTTATGCTTAA+AGG + chr7_3:47233372-47233391 None:intergenic 20.0%
!! AATCACACAATAACTTAATT+AGG + chr7_3:47233396-47233415 None:intergenic 20.0%
!! AATGTCAATACAATTGTAAA+TGG - chr7_3:47233628-47233647 Msa1106730:CDS 20.0%
! AATTTAAACCACCATTTCTT+GGG - chr7_3:47231216-47231235 Msa1106730:intron 25.0%
! GTATTCTATTTGATCAAGAT+CGG + chr7_3:47231507-47231526 None:intergenic 25.0%
! ATGTTAAGAAGTTGAAAGAT+AGG - chr7_3:47231659-47231678 Msa1106730:intron 25.0%
! TGTTAAGAAGTTGAAAGATA+GGG - chr7_3:47231660-47231679 Msa1106730:intron 25.0%
! CAGAAAACTAATTGTGAATA+AGG + chr7_3:47231863-47231882 None:intergenic 25.0%
! TGAGACATTAAAATGAATGA+AGG - chr7_3:47232475-47232494 Msa1106730:intron 25.0%
! GAGACATTAAAATGAATGAA+GGG - chr7_3:47232476-47232495 Msa1106730:intron 25.0%
!!! TTAAGGTGTCATTAAAAGAA+TGG - chr7_3:47232509-47232528 Msa1106730:intron 25.0%
!! ACCTGTAAAGTGTTTATAAT+TGG - chr7_3:47232892-47232911 Msa1106730:intron 25.0%
!! CCTGTAAAGTGTTTATAATT+GGG - chr7_3:47232893-47232912 Msa1106730:intron 25.0%
!! CTGTAAAGTGTTTATAATTG+GGG - chr7_3:47232894-47232913 Msa1106730:intron 25.0%
!!! ACACTTTTATAATTTGTGGT+TGG + chr7_3:47232964-47232983 None:intergenic 25.0%
!! AGTCACACTTTTATAATTTG+TGG + chr7_3:47232968-47232987 None:intergenic 25.0%
!!! CCTAAACCAAAATTTTAAGA+TGG + chr7_3:47233048-47233067 None:intergenic 25.0%
!!! CCATCTTAAAATTTTGGTTT+AGG - chr7_3:47233045-47233064 Msa1106730:intron 25.0%
! TATAACAGATGAACTTATAG+CGG - chr7_3:47233101-47233120 Msa1106730:intron 25.0%
!!! GAAAAAGATCTTTTTGGTAA+CGG + chr7_3:47233296-47233315 None:intergenic 25.0%
! ATAATGTTTATGCTTAAAGG+AGG + chr7_3:47233369-47233388 None:intergenic 25.0%
! ATTAAGTTATTGTGTGATTC+TGG - chr7_3:47233397-47233416 Msa1106730:intron 25.0%
! ATGAAATTGAATGATCAAAG+AGG + chr7_3:47233495-47233514 None:intergenic 25.0%
!! AATTTCCTAAGAACACATTT+TGG + chr7_3:47233707-47233726 None:intergenic 25.0%
!! CAAGATTAAAAGTGAACTTT+TGG + chr7_3:47233762-47233781 None:intergenic 25.0%
!!! CAAAAGTTCACTTTTAATCT+TGG - chr7_3:47233760-47233779 Msa1106730:five_prime_UTR 25.0%
!! GATGAATGATGATGGTAATT+TGG + chr7_3:47230915-47230934 None:intergenic 30.0%
TTACCATCATCATTCATCTT+AGG - chr7_3:47230917-47230936 Msa1106730:three_prime_UTR 30.0%
TTTGAAGGAACAAAAGTTGA+TGG + chr7_3:47230967-47230986 None:intergenic 30.0%
!!! TGTTCAAGTTATGGTTTTGA+AGG + chr7_3:47230982-47231001 None:intergenic 30.0%
! TTTTACTGCTTGAACAGTTA+AGG + chr7_3:47231035-47231054 None:intergenic 30.0%
!!! TTTGGGTTTGTGTTATTTTC+AGG - chr7_3:47231169-47231188 Msa1106730:intron 30.0%
! TAAATTGAGGCTGTACTTTT+GGG + chr7_3:47231202-47231221 None:intergenic 30.0%
! TTAAATTGAGGCTGTACTTT+TGG + chr7_3:47231203-47231222 None:intergenic 30.0%
AGAAATGGTGGTTTAAATTG+AGG + chr7_3:47231215-47231234 None:intergenic 30.0%
CAATTTAAACCACCATTTCT+TGG - chr7_3:47231215-47231234 Msa1106730:intron 30.0%
TTACAAAGACTGCTGAAATA+TGG - chr7_3:47231240-47231259 Msa1106730:intron 30.0%
ACATTGAGATTAGATGGAAA+AGG - chr7_3:47231432-47231451 Msa1106730:intron 30.0%
AAACAGGAGAAAAAGTTAAC+TGG + chr7_3:47231698-47231717 None:intergenic 30.0%
TAAAAATGGATGGTTAGGAT+TGG + chr7_3:47231730-47231749 None:intergenic 30.0%
TGATCTAAAAATGGATGGTT+AGG + chr7_3:47231735-47231754 None:intergenic 30.0%
!! ACCATCCATTTTTAGATCAA+CGG - chr7_3:47231736-47231755 Msa1106730:intron 30.0%
TATAACAACAAAGCAAAGCA+AGG + chr7_3:47231948-47231967 None:intergenic 30.0%
GATATGATGTTAAGATCACA+GGG + chr7_3:47232001-47232020 None:intergenic 30.0%
TGATATGATGTTAAGATCAC+AGG + chr7_3:47232002-47232021 None:intergenic 30.0%
GGCAGTTTATGTAAATTACT+TGG + chr7_3:47232096-47232115 None:intergenic 30.0%
TGAACATGTGATTAAACTAG+CGG + chr7_3:47232140-47232159 None:intergenic 30.0%
ACAAGAAGAGATAACGATAA+CGG - chr7_3:47232306-47232325 Msa1106730:intron 30.0%
ATGTTCAATCTTGAACATCA+CGG + chr7_3:47232669-47232688 None:intergenic 30.0%
GTGTGTTAAGAGTCTAATAT+TGG - chr7_3:47232696-47232715 Msa1106730:intron 30.0%
AGTTAGATCCAATTCTAACA+TGG - chr7_3:47232768-47232787 Msa1106730:intron 30.0%
CTCTAATACCATGTTAGAAT+TGG + chr7_3:47232779-47232798 None:intergenic 30.0%
CCCAATTATAAACACTTTAC+AGG + chr7_3:47232896-47232915 None:intergenic 30.0%
! CGTCTACCATCTTAAAATTT+TGG - chr7_3:47233039-47233058 Msa1106730:intron 30.0%
TCAAACACTACAAATTCCAT+CGG + chr7_3:47233169-47233188 None:intergenic 30.0%
! TATTTTGCAGATAATCCACA+AGG - chr7_3:47233422-47233441 Msa1106730:intron 30.0%
! ATTTTGCAGATAATCCACAA+GGG - chr7_3:47233423-47233442 Msa1106730:intron 30.0%
ATTGGACTTGAAATTGGAAA+AGG - chr7_3:47233459-47233478 Msa1106730:intron 30.0%
ATGATCAAAGAGGAATATCA+AGG + chr7_3:47233485-47233504 None:intergenic 30.0%
! AGTACATGTTTTCTGTCATT+TGG - chr7_3:47233570-47233589 Msa1106730:CDS 30.0%
! ATGTTGCTTGATTTAGTACA+TGG - chr7_3:47233652-47233671 Msa1106730:CDS 30.0%
TGATACCAAAATGTGTTCTT+AGG - chr7_3:47233699-47233718 Msa1106730:exon 30.0%
TGTTCTTAGGAAATTACCTT+AGG - chr7_3:47233712-47233731 Msa1106730:five_prime_UTR 30.0%
! TTTTTGTGTGTTTGGAAGGT+GGG + chr7_3:47230786-47230805 None:intergenic 35.0%
!!! CTTGTTTTTGTGTGTTTGGA+AGG + chr7_3:47230790-47230809 None:intergenic 35.0%
TCCAAACACACAAAAACAAG+TGG - chr7_3:47230790-47230809 Msa1106730:three_prime_UTR 35.0%
!!! TCCACTTGTTTTTGTGTGTT+TGG + chr7_3:47230794-47230813 None:intergenic 35.0%
! TGATGGTAATTTGGTTGATG+AGG + chr7_3:47230906-47230925 None:intergenic 35.0%
GTTCCTAAGATGAATGATGA+TGG + chr7_3:47230923-47230942 None:intergenic 35.0%
! TATAAAGTGCTTACACCAGA+AGG + chr7_3:47231061-47231080 None:intergenic 35.0%
TTTGTAAACCCAAGAAATGG+TGG + chr7_3:47231227-47231246 None:intergenic 35.0%
GTCTTTGTAAACCCAAGAAA+TGG + chr7_3:47231230-47231249 None:intergenic 35.0%
ACTCACAAGTTCTACAATGA+AGG + chr7_3:47231300-47231319 None:intergenic 35.0%
AGGATTTAGATTCTCTTCTG+TGG - chr7_3:47231452-47231471 Msa1106730:intron 35.0%
TCTATTTGATCAAGATCGGA+CGG + chr7_3:47231503-47231522 None:intergenic 35.0%
AACTGCTTTAATCCGTGAAT+TGG - chr7_3:47231603-47231622 Msa1106730:intron 35.0%
GTATATGATTGTGCAGAGAT+GGG + chr7_3:47231841-47231860 None:intergenic 35.0%
GTAGATTGCAAAGTGACTTA+GGG + chr7_3:47231902-47231921 None:intergenic 35.0%
TGTAGATTGCAAAGTGACTT+AGG + chr7_3:47231903-47231922 None:intergenic 35.0%
CATAAACTGCCAAGACATAT+AGG - chr7_3:47232105-47232124 Msa1106730:intron 35.0%
TGTTGTTATGGAAGATGAAG+CGG - chr7_3:47232401-47232420 Msa1106730:intron 35.0%
TGAAGGGCTAAGATCAATTA+AGG - chr7_3:47232492-47232511 Msa1106730:intron 35.0%
!! GGTGTCATTAAAAGAATGGA+CGG - chr7_3:47232513-47232532 Msa1106730:intron 35.0%
! GTGTCATTAAAAGAATGGAC+GGG - chr7_3:47232514-47232533 Msa1106730:intron 35.0%
ATTATTCCACAGGAGAAAAC+AGG - chr7_3:47232541-47232560 Msa1106730:intron 35.0%
ACCGATCATTTAATACTGCT+GGG - chr7_3:47232836-47232855 Msa1106730:intron 35.0%
CTAACACAACTCCACAAAAT+CGG + chr7_3:47232939-47232958 None:intergenic 35.0%
! TCATTGAACCATGTGTTACT+GGG + chr7_3:47233005-47233024 None:intergenic 35.0%
TTCATTGAACCATGTGTTAC+TGG + chr7_3:47233006-47233025 None:intergenic 35.0%
ACATAAACCAAACAAACCCT+TGG - chr7_3:47233335-47233354 Msa1106730:CDS 35.0%
TTTATGCTTAAAGGAGGAGT+GGG + chr7_3:47233363-47233382 None:intergenic 35.0%
! TTTTGTGTGTTTGGAAGGTG+GGG + chr7_3:47230785-47230804 None:intergenic 40.0%
! GTTTTTGTGTGTTTGGAAGG+TGG + chr7_3:47230787-47230806 None:intergenic 40.0%
! TAGCTAGTTCTTCACTGTTG+GGG + chr7_3:47230858-47230877 None:intergenic 40.0%
! GTAGCTAGTTCTTCACTGTT+GGG + chr7_3:47230859-47230878 None:intergenic 40.0%
! TGTAGCTAGTTCTTCACTGT+TGG + chr7_3:47230860-47230879 None:intergenic 40.0%
ACAGTTATCAACCATTGCCA+TGG - chr7_3:47230877-47230896 Msa1106730:three_prime_UTR 40.0%
GTTTGTAGAGTGAAGTGAAG+GGG + chr7_3:47230945-47230964 None:intergenic 40.0%
GGTTTGTAGAGTGAAGTGAA+GGG + chr7_3:47230946-47230965 None:intergenic 40.0%
! TGGTTTGTAGAGTGAAGTGA+AGG + chr7_3:47230947-47230966 None:intergenic 40.0%
!! AACTCTAGAGCTTGCATGAT+AGG - chr7_3:47231263-47231282 Msa1106730:intron 40.0%
CATCAAGAGTCACCAATTCA+CGG + chr7_3:47231618-47231637 None:intergenic 40.0%
GACTCTTGATGCTATTAGAC+TGG - chr7_3:47231627-47231646 Msa1106730:intron 40.0%
GCCGTTGATCTAAAAATGGA+TGG + chr7_3:47231740-47231759 None:intergenic 40.0%
AGCTGCCGTTGATCTAAAAA+TGG + chr7_3:47231744-47231763 None:intergenic 40.0%
GGTATATGATTGTGCAGAGA+TGG + chr7_3:47231842-47231861 None:intergenic 40.0%
AAGTGACTTAGGGTACGAAT+TGG + chr7_3:47231892-47231911 None:intergenic 40.0%
CATGATTCAGATCTTCACAC+CGG + chr7_3:47232235-47232254 None:intergenic 40.0%
! AGAGATAACGATAACGGTGA+CGG - chr7_3:47232312-47232331 Msa1106730:intron 40.0%
! TCATTGGGTCTGTGTTGTTA+TGG - chr7_3:47232389-47232408 Msa1106730:intron 40.0%
!! AGCGGTTTCTATTTTTCTCC+AGG - chr7_3:47232419-47232438 Msa1106730:intron 40.0%
AAGCCAGAATGTGAAAAGGA+AGG - chr7_3:47232442-47232461 Msa1106730:intron 40.0%
AGCCAGAATGTGAAAAGGAA+GGG - chr7_3:47232443-47232462 Msa1106730:intron 40.0%
! TTCCCTTCCTTTTCACATTC+TGG + chr7_3:47232448-47232467 None:intergenic 40.0%
TCTCCCTGAAAGATAGAAGA+GGG - chr7_3:47232589-47232608 Msa1106730:intron 40.0%
ATGCCCTCTTCTATCTTTCA+GGG + chr7_3:47232595-47232614 None:intergenic 40.0%
AATGCCCTCTTCTATCTTTC+AGG + chr7_3:47232596-47232615 None:intergenic 40.0%
!! AGAGTGTCGTTCAAGATTGT+TGG - chr7_3:47232795-47232814 Msa1106730:intron 40.0%
CACCGATCATTTAATACTGC+TGG - chr7_3:47232835-47232854 Msa1106730:intron 40.0%
CCCCAGCAGTATTAAATGAT+CGG + chr7_3:47232840-47232859 None:intergenic 40.0%
CCGATCATTTAATACTGCTG+GGG - chr7_3:47232837-47232856 Msa1106730:intron 40.0%
CGATCATTTAATACTGCTGG+GGG - chr7_3:47232838-47232857 Msa1106730:intron 40.0%
GTTGAGAGTCTCACATTAGA+TGG - chr7_3:47232866-47232885 Msa1106730:intron 40.0%
!! CACCTGTAAAACCGATTTTG+TGG - chr7_3:47232925-47232944 Msa1106730:intron 40.0%
!! CTCCACAAAATCGGTTTTAC+AGG + chr7_3:47232930-47232949 None:intergenic 40.0%
! CGATTTTGTGGAGTTGTGTT+AGG - chr7_3:47232937-47232956 Msa1106730:intron 40.0%
GTTTATGCTTAAAGGAGGAG+TGG + chr7_3:47233364-47233383 None:intergenic 40.0%
AATCCACAAGGGAATACTTG+AGG - chr7_3:47233434-47233453 Msa1106730:intron 40.0%
AAGGGAATACTTGAGGTGAT+TGG - chr7_3:47233441-47233460 Msa1106730:intron 40.0%
GAGGTGATTGGACTTGAAAT+TGG - chr7_3:47233453-47233472 Msa1106730:intron 40.0%
ATTACCTTAGGAGTTGTCTC+TGG - chr7_3:47233724-47233743 Msa1106730:five_prime_UTR 40.0%
!! TTTGGTTGATGAGGTAGCCA+TGG + chr7_3:47230897-47230916 None:intergenic 45.0%
! CTGCTGGTCTGTTCAAGTTA+TGG + chr7_3:47230991-47231010 None:intergenic 45.0%
AAGGAAACTCTCTTCCTGTG+AGG + chr7_3:47231016-47231035 None:intergenic 45.0%
CAAGCAGTAAAACCTCCTTC+TGG - chr7_3:47231043-47231062 Msa1106730:three_prime_UTR 45.0%
! AAAGTGCTTACACCAGAAGG+AGG + chr7_3:47231058-47231077 None:intergenic 45.0%
GCTTGCATGATAGGACTCAT+TGG - chr7_3:47231272-47231291 Msa1106730:intron 45.0%
GTCTCGTGAGGAAGAAAGAA+GGG + chr7_3:47231803-47231822 None:intergenic 45.0%
! AGAGATGGGTTTGTGAGGAA+GGG + chr7_3:47231827-47231846 None:intergenic 45.0%
ACTGCCAAGACATATAGGCA+TGG - chr7_3:47232110-47232129 Msa1106730:intron 45.0%
CTGCCAAGACATATAGGCAT+GGG - chr7_3:47232111-47232130 Msa1106730:intron 45.0%
CATCCCATGCCTATATGTCT+TGG + chr7_3:47232117-47232136 None:intergenic 45.0%
CGGTGTGAAGATCTGAATCA+TGG - chr7_3:47232233-47232252 Msa1106730:intron 45.0%
GATCTGAATCATGGAGTTGC+TGG - chr7_3:47232242-47232261 Msa1106730:intron 45.0%
GCTGGCGATCGTGAAAAAAT+AGG - chr7_3:47232260-47232279 Msa1106730:intron 45.0%
!!! CTTTTCACATTCTGGCTTCC+TGG + chr7_3:47232440-47232459 None:intergenic 45.0%
CAGGAAGCCAGAATGTGAAA+AGG - chr7_3:47232438-47232457 Msa1106730:intron 45.0%
ATTCCACAGGAGAAAACAGG+AGG - chr7_3:47232544-47232563 Msa1106730:intron 45.0%
! ATTCCTCCTGTTTTCTCCTG+TGG + chr7_3:47232550-47232569 None:intergenic 45.0%
! GGAGGAATTTTCCACTGTAG+TGG - chr7_3:47232562-47232581 Msa1106730:intron 45.0%
CTCTTCTATCTTTCAGGGAG+AGG + chr7_3:47232590-47232609 None:intergenic 45.0%
CTCTCCCTGAAAGATAGAAG+AGG - chr7_3:47232588-47232607 Msa1106730:intron 45.0%
ATTGTTGGACCACCTGCTAT+TGG - chr7_3:47232810-47232829 Msa1106730:intron 45.0%
TTGTTGGACCACCTGCTATT+GGG - chr7_3:47232811-47232830 Msa1106730:intron 45.0%
! ACCATGTGTTACTGGGTACT+GGG + chr7_3:47232998-47233017 None:intergenic 45.0%
! AACCATGTGTTACTGGGTAC+TGG + chr7_3:47232999-47233018 None:intergenic 45.0%
ATAGCAGATAAGCTGACCGA+TGG - chr7_3:47233150-47233169 Msa1106730:intron 45.0%
TCACCTCAAGTATTCCCTTG+TGG + chr7_3:47233440-47233459 None:intergenic 45.0%
ATAGCCAGAGACAACTCCTA+AGG + chr7_3:47233731-47233750 None:intergenic 45.0%
!! AATAAAAACAATTAATAAAA+TGG - chr7_3:47231764-47231783 Msa1106730:intron 5.0%
TGATGAGGTAGCCATGGCAA+TGG + chr7_3:47230891-47230910 None:intergenic 50.0%
! GGATTGGCACAGGAGAAAAC+AGG + chr7_3:47231714-47231733 None:intergenic 50.0%
! TGGATGGTTAGGATTGGCAC+AGG + chr7_3:47231724-47231743 None:intergenic 50.0%
GGTCTCGTGAGGAAGAAAGA+AGG + chr7_3:47231804-47231823 None:intergenic 50.0%
! AGATGGGTTTGTGAGGAAGG+GGG + chr7_3:47231825-47231844 None:intergenic 50.0%
! GAGATGGGTTTGTGAGGAAG+GGG + chr7_3:47231826-47231845 None:intergenic 50.0%
! CAGAGATGGGTTTGTGAGGA+AGG + chr7_3:47231828-47231847 None:intergenic 50.0%
! TGTGCAGAGATGGGTTTGTG+AGG + chr7_3:47231832-47231851 None:intergenic 50.0%
GATTCAGATCTTCACACCGG+CGG + chr7_3:47232232-47232251 None:intergenic 50.0%
! ATGGCAATCAAGGAGCACGT+CGG - chr7_3:47232337-47232356 Msa1106730:intron 50.0%
AGCACGTCGGTGGTAATCAA+TGG - chr7_3:47232350-47232369 Msa1106730:intron 50.0%
CGGTGGTAATCAATGGAGCA+CGG - chr7_3:47232357-47232376 Msa1106730:intron 50.0%
GACGGGCAAGATTATTCCAC+AGG - chr7_3:47232531-47232550 Msa1106730:intron 50.0%
ATGATCGGTGACCCAATAGC+AGG + chr7_3:47232825-47232844 None:intergenic 50.0%
ACCCAGTACCCAGTAACACA+TGG - chr7_3:47232994-47233013 Msa1106730:intron 50.0%
! GTGGGAACCAAGGGTTTGTT+TGG + chr7_3:47233345-47233364 None:intergenic 50.0%
AAAGGAGGAGTGGGAACCAA+GGG + chr7_3:47233354-47233373 None:intergenic 50.0%
TAAAGGAGGAGTGGGAACCA+AGG + chr7_3:47233355-47233374 None:intergenic 50.0%
GTGTGTTTGGAAGGTGGGGT+TGG + chr7_3:47230781-47230800 None:intergenic 55.0%
GGCGATTTGCGAAGGTTGAG+GGG + chr7_3:47232168-47232187 None:intergenic 55.0%
CGGCGATTTGCGAAGGTTGA+GGG + chr7_3:47232169-47232188 None:intergenic 55.0%
ACGGCGATTTGCGAAGGTTG+AGG + chr7_3:47232170-47232189 None:intergenic 55.0%
GAGACAACGGCGATTTGCGA+AGG + chr7_3:47232176-47232195 None:intergenic 55.0%
ATTCGAGATCGTGCGACTCG+CGG + chr7_3:47232200-47232219 None:intergenic 55.0%
CGAGTCGCACGATCTCGAAT+GGG - chr7_3:47232200-47232219 Msa1106730:intron 55.0%
! AACGATAACGGTGACGGCGA+TGG - chr7_3:47232318-47232337 Msa1106730:intron 55.0%
AGCACGGCGATGACGTTCAT+TGG - chr7_3:47232373-47232392 Msa1106730:intron 55.0%
GCACGGCGATGACGTTCATT+GGG - chr7_3:47232374-47232393 Msa1106730:intron 55.0%
AGGGAGAGGATCCACTACAG+TGG + chr7_3:47232576-47232595 None:intergenic 55.0%
ATCGGTGACCCAATAGCAGG+TGG + chr7_3:47232822-47232841 None:intergenic 55.0%
! GGAAGGTGGGGTTGGCACAA+AGG + chr7_3:47230773-47230792 None:intergenic 60.0%
ACAGACCAGCAGCACCTCAC+AGG - chr7_3:47230999-47231018 Msa1106730:three_prime_UTR 60.0%
!! CTCTTCCTGTGAGGTGCTGC+TGG + chr7_3:47231007-47231026 None:intergenic 60.0%
GCGAGTCGCACGATCTCGAA+TGG - chr7_3:47232199-47232218 Msa1106730:intron 60.0%
TCAGATCTTCACACCGGCGG+CGG + chr7_3:47232229-47232248 None:intergenic 60.0%
! GGTGACGGCGATGGCAATCA+AGG - chr7_3:47232327-47232346 Msa1106730:intron 60.0%
! GCAATCAAGGAGCACGTCGG+TGG - chr7_3:47232340-47232359 Msa1106730:intron 60.0%
GTGAGGAAGGGGGTCTCGTG+AGG + chr7_3:47231815-47231834 None:intergenic 65.0%
TGCGACTCGCGGCGAGACAA+CGG + chr7_3:47232189-47232208 None:intergenic 65.0%
!! CTCGAATGGGTTGCCGCCGC+CGG - chr7_3:47232213-47232232 Msa1106730:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 47230755 47233847 47230755 ID=Msa1106730;Name=Msa1106730
chr7_3 mRNA 47230755 47233847 47230755 ID=Msa1106730-mRNA-1;Parent=Msa1106730;Name=Msa1106730-mRNA-1;_AED=0.01;_eAED=0.01;_QI=141|1|1|1|1|1|3|347|120
chr7_3 exon 47230755 47231170 47230755 ID=Msa1106730-mRNA-1:exon:9635;Parent=Msa1106730-mRNA-1
chr7_3 exon 47233289 47233411 47233289 ID=Msa1106730-mRNA-1:exon:9634;Parent=Msa1106730-mRNA-1
chr7_3 exon 47233536 47233847 47233536 ID=Msa1106730-mRNA-1:exon:9633;Parent=Msa1106730-mRNA-1
chr7_3 five_prime_UTR 47233707 47233847 47233707 ID=Msa1106730-mRNA-1:five_prime_utr;Parent=Msa1106730-mRNA-1
chr7_3 CDS 47233536 47233706 47233536 ID=Msa1106730-mRNA-1:cds;Parent=Msa1106730-mRNA-1
chr7_3 CDS 47233289 47233411 47233289 ID=Msa1106730-mRNA-1:cds;Parent=Msa1106730-mRNA-1
chr7_3 CDS 47231102 47231170 47231102 ID=Msa1106730-mRNA-1:cds;Parent=Msa1106730-mRNA-1
chr7_3 three_prime_UTR 47230755 47231101 47230755 ID=Msa1106730-mRNA-1:three_prime_utr;Parent=Msa1106730-mRNA-1
Gene Sequence

>Msa1106730

ATGGCTACCTCATCAACCAAATTACCATCATCATTCATCTTAGGAACCCCTTCACTTCACTCTACAAACCATCAACTTTTGTTCCTTCAAAACCATAACTTGAACAGACCAGCAGCACCTCACAGGAAGAGAGTTTCCTTAACTGTTCAAGCAGTAAAACCTCCTTCTGGTGTTGAATTCCCAAAAGTACAGCCTCAATTTAAACCACCATTTCTTGGGTTTACAAAGACTGCTGAAATATGGAACTCTAGAGCTTGCATGATAGGACTCATTGGAACCTTCATTGTAGAACTTATAATCCACAAGGGAATACTTGAGGTGATTGGACTTGAAATTGGAAAAGGCCTTGATATTCCTCTTTGA

Protein sequence

>Msa1106730

MATSSTKLPSSFILGTPSLHSTNHQLLFLQNHNLNRPAAPHRKRVSLTVQAVKPPSGVEFPKVQPQFKPPFLGFTKTAEIWNSRACMIGLIGTFIVELIIHKGILEVIGLEIGKGLDIPL*