AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1121920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1121920 MtrunA17_Chr7g0249261 98.598 214 3 0 1 214 1 214 6.31e-154 425
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1121920 AT4G12800.1 78.899 218 40 2 2 214 3 219 3.61e-102 295
Msa1121920 AT4G12800.2 78.899 218 40 2 2 214 65 281 5.48e-102 296

Find 99 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTTCCTTCTATATGTTT+TGG 0.240111 7_3:+72017390 Msa1121920:CDS
GCAGGCTCTCTTGCAGCTGC+TGG 0.244287 7_3:+72017175 Msa1121920:CDS
AGCATTTGCCTTACAATCTA+TGG 0.244835 7_3:+72017214 Msa1121920:CDS
ATTTGATTGATAGTTGAAAT+TGG 0.261868 7_3:+72017657 Msa1121920:three_prime_UTR
CTTGAATTTGCATTGAACTA+TGG 0.275527 7_3:+72016111 Msa1121920:five_prime_UTR
CAGGCTCTCTTGCAGCTGCT+GGG 0.294839 7_3:+72017176 Msa1121920:CDS
GAGGAATTTCTGGTGTTACT+TGG 0.304451 7_3:+72017365 Msa1121920:CDS
TTTGTTTACTTAACAAAGTA+TGG 0.310191 7_3:-72017418 None:intergenic
GCATATTCGGTGTTCCTTAG+AGG 0.320651 7_3:-72017145 None:intergenic
TCGTTAAAGCCGGGCCTCTA+AGG 0.342506 7_3:+72017131 Msa1121920:CDS
TGCTCCATCTTTGACCTTAA+CGG 0.346044 7_3:+72017270 Msa1121920:CDS
GCCTGCTGATCCGGCATATT+CGG 0.350236 7_3:-72017158 None:intergenic
GCAATTTAACTTCACTGTTA+AGG 0.363545 7_3:+72016336 Msa1121920:CDS
TCAGCTGTTTGGAGCGGATC+GGG 0.396097 7_3:-72017307 None:intergenic
TGGACCAACCATCAGCTGTT+TGG 0.398888 7_3:-72017318 None:intergenic
TGCAAGAGAGCCTGCTGATC+CGG 0.399513 7_3:-72017167 None:intergenic
GCTCCATCTTTGACCTTAAC+GGG 0.401102 7_3:+72017271 Msa1121920:CDS
GCCTTCTAGAAGGCAATTGA+TGG 0.409064 7_3:-72016315 None:intergenic
CATAGTTCAATGCAAATTCA+AGG 0.412347 7_3:-72016110 None:intergenic
CAATGCAAATTCAAGGTTTG+TGG 0.412400 7_3:-72016103 None:intergenic
AAGTTAAATTGCCTTCTAGA+AGG 0.412684 7_3:-72016325 None:intergenic
ATGAAACTCCATAGATTGTA+AGG 0.413757 7_3:-72017222 None:intergenic
GTCCAGCTTCACTAGACCTT+TGG 0.414369 7_3:+72016258 Msa1121920:CDS
GTTTCAAGGCTTCCAATGAA+TGG 0.415748 7_3:-72016980 None:intergenic
TGCAGTGAACCCACTACTTA+GGG 0.418933 7_3:+72017063 Msa1121920:CDS
ACAAGTGGGCTTGATGTAAC+TGG 0.422772 7_3:-72017004 None:intergenic
GAAGATCCAAAACATATAGA+AGG 0.425165 7_3:-72017396 None:intergenic
GTCACACCTAGGGGACTTTG+TGG 0.427623 7_3:+72016280 Msa1121920:CDS
TCCATCAATTGCCTTCTAGA+AGG 0.440411 7_3:+72016314 Msa1121920:CDS
ACCGAATATGCCGGATCAGC+AGG 0.445265 7_3:+72017157 Msa1121920:CDS
GAGGCCCGGCTTTAACGAAC+GGG 0.446312 7_3:-72017126 None:intergenic
TTCACTGCAGTTCTGTAGCC+TGG 0.450335 7_3:-72017049 None:intergenic
CTGCTTCTTACGGCCCGTTA+AGG 0.452578 7_3:-72017284 None:intergenic
AGGAATTTCTGGTGTTACTT+GGG 0.453497 7_3:+72017366 Msa1121920:CDS
CTGCAGTGAACCCACTACTT+AGG 0.453704 7_3:+72017062 Msa1121920:CDS
ATCAACGGTGACCCATTCAT+TGG 0.455192 7_3:+72016968 Msa1121920:CDS
CATGGCAGCTGCTTCTCCTA+TGG 0.458111 7_3:+72016222 Msa1121920:exon
CTGCAGTTCTGTAGCCTGGT+AGG 0.467767 7_3:-72017045 None:intergenic
CGTTGATTGGTTGAATCACT+TGG 0.469160 7_3:-72016952 None:intergenic
GCGGATCGGGCTGCTTCTTA+CGG 0.470007 7_3:-72017294 None:intergenic
TTCGGTGTTCCTTAGAGGCC+CGG 0.471580 7_3:-72017140 None:intergenic
TTTCAAGGCTTCCAATGAAT+GGG 0.476089 7_3:-72016979 None:intergenic
ATGAATGGGTCACCGTTGAT+TGG 0.494570 7_3:-72016965 None:intergenic
AGTTCTGTTGATTCCACAAG+TGG 0.497526 7_3:-72016194 None:intergenic
GGAGTTTCATCATTCAATGA+AGG 0.498940 7_3:+72017235 Msa1121920:CDS
GTAGGCCCGTTCGTTAAAGC+CGG 0.500427 7_3:+72017121 Msa1121920:CDS
TGTTACACACACTGGTTGAA+AGG 0.505035 7_3:-72016158 None:intergenic
CATCAAGCCCACTTGTTGCA+TGG 0.506359 7_3:+72017011 Msa1121920:CDS
GACCAAAGGTCTAGTGAAGC+TGG 0.510695 7_3:-72016260 None:intergenic
AGATTGTAAGGCAAATGCTT+AGG 0.517259 7_3:-72017210 None:intergenic
TAAGGCAATCCAATCTGAAA+AGG 0.518673 7_3:+72016354 Msa1121920:CDS
TAGTGAAGCTGGACTTGAGT+TGG 0.519806 7_3:-72016249 None:intergenic
TTGATGTAACTGGAGTTTCA+AGG 0.522174 7_3:-72016994 None:intergenic
TAGAAGGCAATTGATGGAGT+GGG 0.523972 7_3:-72016309 None:intergenic
TAGACCTTTGGTCACACCTA+GGG 0.524311 7_3:+72016270 Msa1121920:CDS
GACTTGAGTTGGCTTGCCAT+AGG 0.524629 7_3:-72016238 None:intergenic
CGGCCCGTTAAGGTCAAAGA+TGG 0.530150 7_3:-72017274 None:intergenic
TAGGCCCGTTCGTTAAAGCC+GGG 0.536476 7_3:+72017122 Msa1121920:CDS
CGCTCCAAACAGCTGATGGT+TGG 0.542041 7_3:+72017314 Msa1121920:CDS
GATGGTTGGTCCAAGTTCAC+CGG 0.543878 7_3:+72017328 Msa1121920:CDS
ATCAGCTGTTTGGAGCGGAT+CGG 0.546589 7_3:-72017308 None:intergenic
TATGTGTGTTAATGAGATGA+TGG 0.548175 7_3:+72017468 Msa1121920:three_prime_UTR
GGTTGGTCCAAGTTCACCGG+TGG 0.549766 7_3:+72017331 Msa1121920:CDS
CTAAGGAACACCGAATATGC+CGG 0.551083 7_3:+72017148 Msa1121920:CDS
CTTCAATTCCCCTAAGTAGT+GGG 0.556813 7_3:-72017072 None:intergenic
AGAGGCCCGGCTTTAACGAA+CGG 0.558183 7_3:-72017127 None:intergenic
ACTCTGTGCTGCTCCACTTG+TGG 0.562500 7_3:+72016181 Msa1121920:five_prime_UTR
GATCCGCTCCAAACAGCTGA+TGG 0.563858 7_3:+72017310 Msa1121920:CDS
AGTTCTGTAGCCTGGTAGGT+TGG 0.564607 7_3:-72017041 None:intergenic
CTACTTAGGGGAATTGAAGT+CGG 0.568063 7_3:+72017076 Msa1121920:CDS
ACTTCAATTCCCCTAAGTAG+TGG 0.569195 7_3:-72017073 None:intergenic
CACAGAGTTGTTACACACAC+TGG 0.574641 7_3:-72016166 None:intergenic
GGCCTACGAGGAAGAATCCG+TGG 0.584423 7_3:-72017105 None:intergenic
ATTGAAGTCGGCTTAGCCCA+CGG 0.585782 7_3:+72017088 Msa1121920:CDS
ACACACACTGGTTGAAAGGA+GGG 0.589589 7_3:-72016154 None:intergenic
TGTAGCCTGGTAGGTTGGAG+AGG 0.590006 7_3:-72017036 None:intergenic
GAAGAGCCACAAAGTCCCCT+AGG 0.592421 7_3:-72016286 None:intergenic
CTAGAAGGCAATTGATGGAG+TGG 0.595003 7_3:-72016310 None:intergenic
CTAGACCTTTGGTCACACCT+AGG 0.596879 7_3:+72016269 Msa1121920:CDS
TGGTACCTCTCCAACCTACC+AGG 0.596886 7_3:+72017031 Msa1121920:CDS
TACACACACTGGTTGAAAGG+AGG 0.597296 7_3:-72016155 None:intergenic
GAGAGGTACCATGCAACAAG+TGG 0.599829 7_3:-72017019 None:intergenic
ATGGAAGTACTTAGCCACTC+TGG 0.610637 7_3:+72016130 Msa1121920:five_prime_UTR
TATCAGCCAATGAGAAGTGA+GGG 0.611980 7_3:+72016070 None:intergenic
GTTGGTCCAAGTTCACCGGT+GGG 0.617313 7_3:+72017332 Msa1121920:CDS
AATCAACAGAACTTAAGTCA+TGG 0.622961 7_3:+72016204 Msa1121920:exon
CACACACTGGTTGAAAGGAG+GGG 0.640866 7_3:-72016153 None:intergenic
GCCTACGAGGAAGAATCCGT+GGG 0.642971 7_3:-72017104 None:intergenic
CTTTAACGAACGGGCCTACG+AGG 0.656397 7_3:-72017117 None:intergenic
CAACCATCAGCTGTTTGGAG+CGG 0.658464 7_3:-72017313 None:intergenic
AGAAGGCAATTGATGGAGTG+GGG 0.661086 7_3:-72016308 None:intergenic
ATATCAGCCAATGAGAAGTG+AGG 0.663341 7_3:+72016069 None:intergenic
AGACCTTTGGTCACACCTAG+GGG 0.664459 7_3:+72016271 Msa1121920:CDS
GCAGTGAACCCACTACTTAG+GGG 0.670055 7_3:+72017064 Msa1121920:CDS
CAAGTGATTCAACCAATCAA+CGG 0.677130 7_3:+72016953 Msa1121920:CDS
AGAGGTACCATGCAACAAGT+GGG 0.679084 7_3:-72017018 None:intergenic
AGTCCCCTAGGTGTGACCAA+AGG 0.679971 7_3:-72016274 None:intergenic
GCCCACGGATTCTTCCTCGT+AGG 0.683737 7_3:+72017103 Msa1121920:CDS
GTTGAAAGGAGGGGCCAGAG+TGG 0.690361 7_3:-72016144 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATAACTAACTAAATAAA+GGG - chr7_3:72016512-72016531 None:intergenic 15.0%
!! AAACATAACTAACTAAATAA+AGG - chr7_3:72016513-72016532 None:intergenic 15.0%
!! AACATAACTAACTAAATAAA+GGG - chr7_3:72016512-72016531 None:intergenic 15.0%
!! AAACATAACTAACTAAATAA+AGG - chr7_3:72016513-72016532 None:intergenic 15.0%
!!! TTGCTAATGTATTTTAACTA+TGG - chr7_3:72016464-72016483 None:intergenic 20.0%
!!! AACATGTTCATTATTTTAAG+TGG + chr7_3:72016617-72016636 Msa1121920:intron 20.0%
!! TATATATATGTTCATTGCTT+AGG + chr7_3:72016652-72016671 Msa1121920:intron 20.0%
!! GTTCATTTCTATAATTGAAT+AGG + chr7_3:72016815-72016834 Msa1121920:intron 20.0%
!! ATTGAGTCATTTATTTCAAT+TGG + chr7_3:72016903-72016922 Msa1121920:intron 20.0%
!! TTTGTTTACTTAACAAAGTA+TGG - chr7_3:72017421-72017440 None:intergenic 20.0%
!! TTGAAGTATGTAAAAATTGA+TGG + chr7_3:72017584-72017603 Msa1121920:three_prime_UTR 20.0%
!! TATGTAAAAATTGATGGAAA+TGG + chr7_3:72017590-72017609 Msa1121920:three_prime_UTR 20.0%
!!! ATTTGATTGATAGTTGAAAT+TGG + chr7_3:72017657-72017676 Msa1121920:three_prime_UTR 20.0%
!!! TTGCTAATGTATTTTAACTA+TGG - chr7_3:72016464-72016483 None:intergenic 20.0%
!!! AACATGTTCATTATTTTAAG+TGG + chr7_3:72016617-72016636 Msa1121920:intron 20.0%
!! TATATATATGTTCATTGCTT+AGG + chr7_3:72016652-72016671 Msa1121920:intron 20.0%
!! GTTCATTTCTATAATTGAAT+AGG + chr7_3:72016815-72016834 Msa1121920:intron 20.0%
!! ATTGAGTCATTTATTTCAAT+TGG + chr7_3:72016903-72016922 Msa1121920:intron 20.0%
!! TTTGTTTACTTAACAAAGTA+TGG - chr7_3:72017421-72017440 None:intergenic 20.0%
!! TTGAAGTATGTAAAAATTGA+TGG + chr7_3:72017584-72017603 Msa1121920:three_prime_UTR 20.0%
!! TATGTAAAAATTGATGGAAA+TGG + chr7_3:72017590-72017609 Msa1121920:three_prime_UTR 20.0%
!!! ATTTGATTGATAGTTGAAAT+TGG + chr7_3:72017657-72017676 Msa1121920:three_prime_UTR 20.0%
!! TAAACAAAGAGAGTATACAT+AGG - chr7_3:72016400-72016419 None:intergenic 25.0%
! AGATAAAGTGGAATAGATTA+TGG - chr7_3:72016435-72016454 None:intergenic 25.0%
! GAAATAAATGACTCAATTTC+AGG - chr7_3:72016900-72016919 None:intergenic 25.0%
!! TTACTTCCTTCTATATGTTT+TGG + chr7_3:72017390-72017409 Msa1121920:CDS 25.0%
!! TAAACAAAGAGAGTATACAT+AGG - chr7_3:72016400-72016419 None:intergenic 25.0%
! AGATAAAGTGGAATAGATTA+TGG - chr7_3:72016435-72016454 None:intergenic 25.0%
! GAAATAAATGACTCAATTTC+AGG - chr7_3:72016900-72016919 None:intergenic 25.0%
!! TTACTTCCTTCTATATGTTT+TGG + chr7_3:72017390-72017409 Msa1121920:CDS 25.0%
CATAGTTCAATGCAAATTCA+AGG - chr7_3:72016113-72016132 None:intergenic 30.0%
CTTGAATTTGCATTGAACTA+TGG + chr7_3:72016111-72016130 Msa1121920:five_prime_UTR 30.0%
AATCAACAGAACTTAAGTCA+TGG + chr7_3:72016204-72016223 Msa1121920:exon 30.0%
AAGTTAAATTGCCTTCTAGA+AGG - chr7_3:72016328-72016347 None:intergenic 30.0%
! GCAATTTAACTTCACTGTTA+AGG + chr7_3:72016336-72016355 Msa1121920:CDS 30.0%
! AGAGAGTATACATAGGTAAT+AGG - chr7_3:72016393-72016412 None:intergenic 30.0%
CTATGGTATGATAGATAAAG+TGG - chr7_3:72016447-72016466 None:intergenic 30.0%
CAGAAGCAATTCATGAATTA+AGG - chr7_3:72016555-72016574 None:intergenic 30.0%
TATATGTTCATTGCTTAGGT+TGG + chr7_3:72016656-72016675 Msa1121920:intron 30.0%
CCTATAACAGTAGTCAAAAA+CGG + chr7_3:72016768-72016787 Msa1121920:intron 30.0%
! GCTTTTGTCAAAGTTGTTAT+AGG - chr7_3:72016872-72016891 None:intergenic 30.0%
ATGAAACTCCATAGATTGTA+AGG - chr7_3:72017225-72017244 None:intergenic 30.0%
!! TTTTTCTTTGGAGGAATTTC+TGG + chr7_3:72017355-72017374 Msa1121920:CDS 30.0%
GAAGATCCAAAACATATAGA+AGG - chr7_3:72017399-72017418 None:intergenic 30.0%
TATGTGTGTTAATGAGATGA+TGG + chr7_3:72017468-72017487 Msa1121920:three_prime_UTR 30.0%
CATAGTTCAATGCAAATTCA+AGG - chr7_3:72016113-72016132 None:intergenic 30.0%
CTTGAATTTGCATTGAACTA+TGG + chr7_3:72016111-72016130 Msa1121920:five_prime_UTR 30.0%
AATCAACAGAACTTAAGTCA+TGG + chr7_3:72016204-72016223 Msa1121920:exon 30.0%
AAGTTAAATTGCCTTCTAGA+AGG - chr7_3:72016328-72016347 None:intergenic 30.0%
! GCAATTTAACTTCACTGTTA+AGG + chr7_3:72016336-72016355 Msa1121920:CDS 30.0%
! AGAGAGTATACATAGGTAAT+AGG - chr7_3:72016393-72016412 None:intergenic 30.0%
CTATGGTATGATAGATAAAG+TGG - chr7_3:72016447-72016466 None:intergenic 30.0%
CAGAAGCAATTCATGAATTA+AGG - chr7_3:72016555-72016574 None:intergenic 30.0%
TATATGTTCATTGCTTAGGT+TGG + chr7_3:72016656-72016675 Msa1121920:intron 30.0%
CCTATAACAGTAGTCAAAAA+CGG + chr7_3:72016768-72016787 Msa1121920:intron 30.0%
! GCTTTTGTCAAAGTTGTTAT+AGG - chr7_3:72016872-72016891 None:intergenic 30.0%
ATGAAACTCCATAGATTGTA+AGG - chr7_3:72017225-72017244 None:intergenic 30.0%
!! TTTTTCTTTGGAGGAATTTC+TGG + chr7_3:72017355-72017374 Msa1121920:CDS 30.0%
GAAGATCCAAAACATATAGA+AGG - chr7_3:72017399-72017418 None:intergenic 30.0%
TATGTGTGTTAATGAGATGA+TGG + chr7_3:72017468-72017487 Msa1121920:three_prime_UTR 30.0%
CAATGCAAATTCAAGGTTTG+TGG - chr7_3:72016106-72016125 None:intergenic 35.0%
TAAGGCAATCCAATCTGAAA+AGG + chr7_3:72016354-72016373 Msa1121920:CDS 35.0%
! AGTAGCATACCTTTTCAGAT+TGG - chr7_3:72016366-72016385 None:intergenic 35.0%
GAGTATACATAGGTAATAGG+AGG - chr7_3:72016390-72016409 None:intergenic 35.0%
!! TTAGGTTGGTTTGAGTAGTA+AGG + chr7_3:72016670-72016689 Msa1121920:intron 35.0%
!! CCGTTTTTGACTACTGTTAT+AGG - chr7_3:72016771-72016790 None:intergenic 35.0%
! TGGTAATTTTGCTGCAACAA+TGG - chr7_3:72016935-72016954 None:intergenic 35.0%
CAAGTGATTCAACCAATCAA+CGG + chr7_3:72016953-72016972 Msa1121920:CDS 35.0%
TTTCAAGGCTTCCAATGAAT+GGG - chr7_3:72016982-72017001 None:intergenic 35.0%
TTGATGTAACTGGAGTTTCA+AGG - chr7_3:72016997-72017016 None:intergenic 35.0%
AGATTGTAAGGCAAATGCTT+AGG - chr7_3:72017213-72017232 None:intergenic 35.0%
AGCATTTGCCTTACAATCTA+TGG + chr7_3:72017214-72017233 Msa1121920:CDS 35.0%
GGAGTTTCATCATTCAATGA+AGG + chr7_3:72017235-72017254 Msa1121920:CDS 35.0%
!! AGGAATTTCTGGTGTTACTT+GGG + chr7_3:72017366-72017385 Msa1121920:CDS 35.0%
CAATGCAAATTCAAGGTTTG+TGG - chr7_3:72016106-72016125 None:intergenic 35.0%
TAAGGCAATCCAATCTGAAA+AGG + chr7_3:72016354-72016373 Msa1121920:CDS 35.0%
! AGTAGCATACCTTTTCAGAT+TGG - chr7_3:72016366-72016385 None:intergenic 35.0%
GAGTATACATAGGTAATAGG+AGG - chr7_3:72016390-72016409 None:intergenic 35.0%
!! TTAGGTTGGTTTGAGTAGTA+AGG + chr7_3:72016670-72016689 Msa1121920:intron 35.0%
!! CCGTTTTTGACTACTGTTAT+AGG - chr7_3:72016771-72016790 None:intergenic 35.0%
! TGGTAATTTTGCTGCAACAA+TGG - chr7_3:72016935-72016954 None:intergenic 35.0%
CAAGTGATTCAACCAATCAA+CGG + chr7_3:72016953-72016972 Msa1121920:CDS 35.0%
TTTCAAGGCTTCCAATGAAT+GGG - chr7_3:72016982-72017001 None:intergenic 35.0%
TTGATGTAACTGGAGTTTCA+AGG - chr7_3:72016997-72017016 None:intergenic 35.0%
AGATTGTAAGGCAAATGCTT+AGG - chr7_3:72017213-72017232 None:intergenic 35.0%
AGCATTTGCCTTACAATCTA+TGG + chr7_3:72017214-72017233 Msa1121920:CDS 35.0%
GGAGTTTCATCATTCAATGA+AGG + chr7_3:72017235-72017254 Msa1121920:CDS 35.0%
!! AGGAATTTCTGGTGTTACTT+GGG + chr7_3:72017366-72017385 Msa1121920:CDS 35.0%
! TGTTACACACACTGGTTGAA+AGG - chr7_3:72016161-72016180 None:intergenic 40.0%
!! AGTTCTGTTGATTCCACAAG+TGG - chr7_3:72016197-72016216 None:intergenic 40.0%
TAGAAGGCAATTGATGGAGT+GGG - chr7_3:72016312-72016331 None:intergenic 40.0%
TCCATCAATTGCCTTCTAGA+AGG + chr7_3:72016314-72016333 Msa1121920:CDS 40.0%
! CGTTGATTGGTTGAATCACT+TGG - chr7_3:72016955-72016974 None:intergenic 40.0%
GTTTCAAGGCTTCCAATGAA+TGG - chr7_3:72016983-72017002 None:intergenic 40.0%
CTTCAATTCCCCTAAGTAGT+GGG - chr7_3:72017075-72017094 None:intergenic 40.0%
ACTTCAATTCCCCTAAGTAG+TGG - chr7_3:72017076-72017095 None:intergenic 40.0%
CTACTTAGGGGAATTGAAGT+CGG + chr7_3:72017076-72017095 Msa1121920:CDS 40.0%
TGCTCCATCTTTGACCTTAA+CGG + chr7_3:72017270-72017289 Msa1121920:CDS 40.0%
!! GAGGAATTTCTGGTGTTACT+TGG + chr7_3:72017365-72017384 Msa1121920:CDS 40.0%
! TGTTACACACACTGGTTGAA+AGG - chr7_3:72016161-72016180 None:intergenic 40.0%
!! AGTTCTGTTGATTCCACAAG+TGG - chr7_3:72016197-72016216 None:intergenic 40.0%
TAGAAGGCAATTGATGGAGT+GGG - chr7_3:72016312-72016331 None:intergenic 40.0%
TCCATCAATTGCCTTCTAGA+AGG + chr7_3:72016314-72016333 Msa1121920:CDS 40.0%
! CGTTGATTGGTTGAATCACT+TGG - chr7_3:72016955-72016974 None:intergenic 40.0%
GTTTCAAGGCTTCCAATGAA+TGG - chr7_3:72016983-72017002 None:intergenic 40.0%
CTTCAATTCCCCTAAGTAGT+GGG - chr7_3:72017075-72017094 None:intergenic 40.0%
ACTTCAATTCCCCTAAGTAG+TGG - chr7_3:72017076-72017095 None:intergenic 40.0%
CTACTTAGGGGAATTGAAGT+CGG + chr7_3:72017076-72017095 Msa1121920:CDS 40.0%
TGCTCCATCTTTGACCTTAA+CGG + chr7_3:72017270-72017289 Msa1121920:CDS 40.0%
!! GAGGAATTTCTGGTGTTACT+TGG + chr7_3:72017365-72017384 Msa1121920:CDS 40.0%
!! ATGGAAGTACTTAGCCACTC+TGG + chr7_3:72016130-72016149 Msa1121920:five_prime_UTR 45.0%
! ACACACACTGGTTGAAAGGA+GGG - chr7_3:72016157-72016176 None:intergenic 45.0%
! TACACACACTGGTTGAAAGG+AGG - chr7_3:72016158-72016177 None:intergenic 45.0%
CACAGAGTTGTTACACACAC+TGG - chr7_3:72016169-72016188 None:intergenic 45.0%
TAGTGAAGCTGGACTTGAGT+TGG - chr7_3:72016252-72016271 None:intergenic 45.0%
TAGACCTTTGGTCACACCTA+GGG + chr7_3:72016270-72016289 Msa1121920:CDS 45.0%
AGAAGGCAATTGATGGAGTG+GGG - chr7_3:72016311-72016330 None:intergenic 45.0%
CTAGAAGGCAATTGATGGAG+TGG - chr7_3:72016313-72016332 None:intergenic 45.0%
! GCCTTCTAGAAGGCAATTGA+TGG - chr7_3:72016318-72016337 None:intergenic 45.0%
! GTAAGGCTAGCTAAGTGATC+AGG + chr7_3:72016687-72016706 Msa1121920:intron 45.0%
ATGAATGGGTCACCGTTGAT+TGG - chr7_3:72016968-72016987 None:intergenic 45.0%
ATCAACGGTGACCCATTCAT+TGG + chr7_3:72016968-72016987 Msa1121920:CDS 45.0%
! ACAAGTGGGCTTGATGTAAC+TGG - chr7_3:72017007-72017026 None:intergenic 45.0%
!! AGAGGTACCATGCAACAAGT+GGG - chr7_3:72017021-72017040 None:intergenic 45.0%
TGCAGTGAACCCACTACTTA+GGG + chr7_3:72017063-72017082 Msa1121920:CDS 45.0%
!! GCATATTCGGTGTTCCTTAG+AGG - chr7_3:72017148-72017167 None:intergenic 45.0%
CTAAGGAACACCGAATATGC+CGG + chr7_3:72017148-72017167 Msa1121920:CDS 45.0%
GCTCCATCTTTGACCTTAAC+GGG + chr7_3:72017271-72017290 Msa1121920:CDS 45.0%
!! TTCACCGGTGGGTTTTTCTT+TGG + chr7_3:72017343-72017362 Msa1121920:CDS 45.0%
TCCTCCAAAGAAAAACCCAC+CGG - chr7_3:72017350-72017369 None:intergenic 45.0%
!! ATGGAAGTACTTAGCCACTC+TGG + chr7_3:72016130-72016149 Msa1121920:five_prime_UTR 45.0%
! ACACACACTGGTTGAAAGGA+GGG - chr7_3:72016157-72016176 None:intergenic 45.0%
! TACACACACTGGTTGAAAGG+AGG - chr7_3:72016158-72016177 None:intergenic 45.0%
CACAGAGTTGTTACACACAC+TGG - chr7_3:72016169-72016188 None:intergenic 45.0%
TAGTGAAGCTGGACTTGAGT+TGG - chr7_3:72016252-72016271 None:intergenic 45.0%
TAGACCTTTGGTCACACCTA+GGG + chr7_3:72016270-72016289 Msa1121920:CDS 45.0%
AGAAGGCAATTGATGGAGTG+GGG - chr7_3:72016311-72016330 None:intergenic 45.0%
CTAGAAGGCAATTGATGGAG+TGG - chr7_3:72016313-72016332 None:intergenic 45.0%
! GCCTTCTAGAAGGCAATTGA+TGG - chr7_3:72016318-72016337 None:intergenic 45.0%
! GTAAGGCTAGCTAAGTGATC+AGG + chr7_3:72016687-72016706 Msa1121920:intron 45.0%
ATGAATGGGTCACCGTTGAT+TGG - chr7_3:72016968-72016987 None:intergenic 45.0%
ATCAACGGTGACCCATTCAT+TGG + chr7_3:72016968-72016987 Msa1121920:CDS 45.0%
! ACAAGTGGGCTTGATGTAAC+TGG - chr7_3:72017007-72017026 None:intergenic 45.0%
!! AGAGGTACCATGCAACAAGT+GGG - chr7_3:72017021-72017040 None:intergenic 45.0%
TGCAGTGAACCCACTACTTA+GGG + chr7_3:72017063-72017082 Msa1121920:CDS 45.0%
!! GCATATTCGGTGTTCCTTAG+AGG - chr7_3:72017148-72017167 None:intergenic 45.0%
CTAAGGAACACCGAATATGC+CGG + chr7_3:72017148-72017167 Msa1121920:CDS 45.0%
GCTCCATCTTTGACCTTAAC+GGG + chr7_3:72017271-72017290 Msa1121920:CDS 45.0%
!! TTCACCGGTGGGTTTTTCTT+TGG + chr7_3:72017343-72017362 Msa1121920:CDS 45.0%
TCCTCCAAAGAAAAACCCAC+CGG - chr7_3:72017350-72017369 None:intergenic 45.0%
! CACACACTGGTTGAAAGGAG+GGG - chr7_3:72016156-72016175 None:intergenic 50.0%
!! GACTTGAGTTGGCTTGCCAT+AGG - chr7_3:72016241-72016260 None:intergenic 50.0%
GTCCAGCTTCACTAGACCTT+TGG + chr7_3:72016258-72016277 Msa1121920:CDS 50.0%
GACCAAAGGTCTAGTGAAGC+TGG - chr7_3:72016263-72016282 None:intergenic 50.0%
CTAGACCTTTGGTCACACCT+AGG + chr7_3:72016269-72016288 Msa1121920:CDS 50.0%
AGACCTTTGGTCACACCTAG+GGG + chr7_3:72016271-72016290 Msa1121920:CDS 50.0%
! CATCAAGCCCACTTGTTGCA+TGG + chr7_3:72017011-72017030 Msa1121920:CDS 50.0%
!! GAGAGGTACCATGCAACAAG+TGG - chr7_3:72017022-72017041 None:intergenic 50.0%
AGTTCTGTAGCCTGGTAGGT+TGG - chr7_3:72017044-72017063 None:intergenic 50.0%
TTCACTGCAGTTCTGTAGCC+TGG - chr7_3:72017052-72017071 None:intergenic 50.0%
CTGCAGTGAACCCACTACTT+AGG + chr7_3:72017062-72017081 Msa1121920:CDS 50.0%
GCAGTGAACCCACTACTTAG+GGG + chr7_3:72017064-72017083 Msa1121920:CDS 50.0%
! ATTGAAGTCGGCTTAGCCCA+CGG + chr7_3:72017088-72017107 Msa1121920:CDS 50.0%
! ATCAGCTGTTTGGAGCGGAT+CGG - chr7_3:72017311-72017330 None:intergenic 50.0%
CAACCATCAGCTGTTTGGAG+CGG - chr7_3:72017316-72017335 None:intergenic 50.0%
TGGACCAACCATCAGCTGTT+TGG - chr7_3:72017321-72017340 None:intergenic 50.0%
! GATGGTTGGTCCAAGTTCAC+CGG + chr7_3:72017328-72017347 Msa1121920:CDS 50.0%
GAAAAACCCACCGGTGAACT+TGG - chr7_3:72017341-72017360 None:intergenic 50.0%
!! ACCGGTGGGTTTTTCTTTGG+AGG + chr7_3:72017346-72017365 Msa1121920:CDS 50.0%
GTTGAAGTCCCTCACTTCTC+TGG - chr7_3:72016081-72016100 None:intergenic 50.0%
! CACACACTGGTTGAAAGGAG+GGG - chr7_3:72016156-72016175 None:intergenic 50.0%
!! GACTTGAGTTGGCTTGCCAT+AGG - chr7_3:72016241-72016260 None:intergenic 50.0%
GTCCAGCTTCACTAGACCTT+TGG + chr7_3:72016258-72016277 Msa1121920:CDS 50.0%
GACCAAAGGTCTAGTGAAGC+TGG - chr7_3:72016263-72016282 None:intergenic 50.0%
CTAGACCTTTGGTCACACCT+AGG + chr7_3:72016269-72016288 Msa1121920:CDS 50.0%
AGACCTTTGGTCACACCTAG+GGG + chr7_3:72016271-72016290 Msa1121920:CDS 50.0%
! CATCAAGCCCACTTGTTGCA+TGG + chr7_3:72017011-72017030 Msa1121920:CDS 50.0%
!! GAGAGGTACCATGCAACAAG+TGG - chr7_3:72017022-72017041 None:intergenic 50.0%
AGTTCTGTAGCCTGGTAGGT+TGG - chr7_3:72017044-72017063 None:intergenic 50.0%
TTCACTGCAGTTCTGTAGCC+TGG - chr7_3:72017052-72017071 None:intergenic 50.0%
CTGCAGTGAACCCACTACTT+AGG + chr7_3:72017062-72017081 Msa1121920:CDS 50.0%
GCAGTGAACCCACTACTTAG+GGG + chr7_3:72017064-72017083 Msa1121920:CDS 50.0%
! ATTGAAGTCGGCTTAGCCCA+CGG + chr7_3:72017088-72017107 Msa1121920:CDS 50.0%
! ATCAGCTGTTTGGAGCGGAT+CGG - chr7_3:72017311-72017330 None:intergenic 50.0%
CAACCATCAGCTGTTTGGAG+CGG - chr7_3:72017316-72017335 None:intergenic 50.0%
TGGACCAACCATCAGCTGTT+TGG - chr7_3:72017321-72017340 None:intergenic 50.0%
! GATGGTTGGTCCAAGTTCAC+CGG + chr7_3:72017328-72017347 Msa1121920:CDS 50.0%
GAAAAACCCACCGGTGAACT+TGG - chr7_3:72017341-72017360 None:intergenic 50.0%
!! ACCGGTGGGTTTTTCTTTGG+AGG + chr7_3:72017346-72017365 Msa1121920:CDS 50.0%
! ACTCTGTGCTGCTCCACTTG+TGG + chr7_3:72016181-72016200 Msa1121920:five_prime_UTR 55.0%
CATGGCAGCTGCTTCTCCTA+TGG + chr7_3:72016222-72016241 Msa1121920:exon 55.0%
AGTCCCCTAGGTGTGACCAA+AGG - chr7_3:72016277-72016296 None:intergenic 55.0%
GTCACACCTAGGGGACTTTG+TGG + chr7_3:72016280-72016299 Msa1121920:CDS 55.0%
GAAGAGCCACAAAGTCCCCT+AGG - chr7_3:72016289-72016308 None:intergenic 55.0%
TGGTACCTCTCCAACCTACC+AGG + chr7_3:72017031-72017050 Msa1121920:CDS 55.0%
! TGTAGCCTGGTAGGTTGGAG+AGG - chr7_3:72017039-72017058 None:intergenic 55.0%
CTGCAGTTCTGTAGCCTGGT+AGG - chr7_3:72017048-72017067 None:intergenic 55.0%
GCCTACGAGGAAGAATCCGT+GGG - chr7_3:72017107-72017126 None:intergenic 55.0%
CTTTAACGAACGGGCCTACG+AGG - chr7_3:72017120-72017139 None:intergenic 55.0%
GTAGGCCCGTTCGTTAAAGC+CGG + chr7_3:72017121-72017140 Msa1121920:CDS 55.0%
TAGGCCCGTTCGTTAAAGCC+GGG + chr7_3:72017122-72017141 Msa1121920:CDS 55.0%
! AGAGGCCCGGCTTTAACGAA+CGG - chr7_3:72017130-72017149 None:intergenic 55.0%
TCGTTAAAGCCGGGCCTCTA+AGG + chr7_3:72017131-72017150 Msa1121920:CDS 55.0%
!! TTCGGTGTTCCTTAGAGGCC+CGG - chr7_3:72017143-72017162 None:intergenic 55.0%
ACCGAATATGCCGGATCAGC+AGG + chr7_3:72017157-72017176 Msa1121920:CDS 55.0%
GCCTGCTGATCCGGCATATT+CGG - chr7_3:72017161-72017180 None:intergenic 55.0%
TGCAAGAGAGCCTGCTGATC+CGG - chr7_3:72017170-72017189 None:intergenic 55.0%
CGGCCCGTTAAGGTCAAAGA+TGG - chr7_3:72017277-72017296 None:intergenic 55.0%
CTGCTTCTTACGGCCCGTTA+AGG - chr7_3:72017287-72017306 None:intergenic 55.0%
! TCAGCTGTTTGGAGCGGATC+GGG - chr7_3:72017310-72017329 None:intergenic 55.0%
GATCCGCTCCAAACAGCTGA+TGG + chr7_3:72017310-72017329 Msa1121920:CDS 55.0%
CGCTCCAAACAGCTGATGGT+TGG + chr7_3:72017314-72017333 Msa1121920:CDS 55.0%
GTTGGTCCAAGTTCACCGGT+GGG + chr7_3:72017332-72017351 Msa1121920:CDS 55.0%
! ACTCTGTGCTGCTCCACTTG+TGG + chr7_3:72016181-72016200 Msa1121920:five_prime_UTR 55.0%
CATGGCAGCTGCTTCTCCTA+TGG + chr7_3:72016222-72016241 Msa1121920:exon 55.0%
AGTCCCCTAGGTGTGACCAA+AGG - chr7_3:72016277-72016296 None:intergenic 55.0%
GTCACACCTAGGGGACTTTG+TGG + chr7_3:72016280-72016299 Msa1121920:CDS 55.0%
GAAGAGCCACAAAGTCCCCT+AGG - chr7_3:72016289-72016308 None:intergenic 55.0%
TGGTACCTCTCCAACCTACC+AGG + chr7_3:72017031-72017050 Msa1121920:CDS 55.0%
! TGTAGCCTGGTAGGTTGGAG+AGG - chr7_3:72017039-72017058 None:intergenic 55.0%
CTGCAGTTCTGTAGCCTGGT+AGG - chr7_3:72017048-72017067 None:intergenic 55.0%
GCCTACGAGGAAGAATCCGT+GGG - chr7_3:72017107-72017126 None:intergenic 55.0%
CTTTAACGAACGGGCCTACG+AGG - chr7_3:72017120-72017139 None:intergenic 55.0%
GTAGGCCCGTTCGTTAAAGC+CGG + chr7_3:72017121-72017140 Msa1121920:CDS 55.0%
TAGGCCCGTTCGTTAAAGCC+GGG + chr7_3:72017122-72017141 Msa1121920:CDS 55.0%
! AGAGGCCCGGCTTTAACGAA+CGG - chr7_3:72017130-72017149 None:intergenic 55.0%
TCGTTAAAGCCGGGCCTCTA+AGG + chr7_3:72017131-72017150 Msa1121920:CDS 55.0%
!! TTCGGTGTTCCTTAGAGGCC+CGG - chr7_3:72017143-72017162 None:intergenic 55.0%
ACCGAATATGCCGGATCAGC+AGG + chr7_3:72017157-72017176 Msa1121920:CDS 55.0%
GCCTGCTGATCCGGCATATT+CGG - chr7_3:72017161-72017180 None:intergenic 55.0%
TGCAAGAGAGCCTGCTGATC+CGG - chr7_3:72017170-72017189 None:intergenic 55.0%
CGGCCCGTTAAGGTCAAAGA+TGG - chr7_3:72017277-72017296 None:intergenic 55.0%
CTGCTTCTTACGGCCCGTTA+AGG - chr7_3:72017287-72017306 None:intergenic 55.0%
! TCAGCTGTTTGGAGCGGATC+GGG - chr7_3:72017310-72017329 None:intergenic 55.0%
GATCCGCTCCAAACAGCTGA+TGG + chr7_3:72017310-72017329 Msa1121920:CDS 55.0%
CGCTCCAAACAGCTGATGGT+TGG + chr7_3:72017314-72017333 Msa1121920:CDS 55.0%
GTTGGTCCAAGTTCACCGGT+GGG + chr7_3:72017332-72017351 Msa1121920:CDS 55.0%
GTTGAAAGGAGGGGCCAGAG+TGG - chr7_3:72016147-72016166 None:intergenic 60.0%
GCCCACGGATTCTTCCTCGT+AGG + chr7_3:72017103-72017122 Msa1121920:CDS 60.0%
GGCCTACGAGGAAGAATCCG+TGG - chr7_3:72017108-72017127 None:intergenic 60.0%
! GAGGCCCGGCTTTAACGAAC+GGG - chr7_3:72017129-72017148 None:intergenic 60.0%
CAGGCTCTCTTGCAGCTGCT+GGG + chr7_3:72017176-72017195 Msa1121920:CDS 60.0%
GCGGATCGGGCTGCTTCTTA+CGG - chr7_3:72017297-72017316 None:intergenic 60.0%
! GGTTGGTCCAAGTTCACCGG+TGG + chr7_3:72017331-72017350 Msa1121920:CDS 60.0%
GTTGAAAGGAGGGGCCAGAG+TGG - chr7_3:72016147-72016166 None:intergenic 60.0%
GCCCACGGATTCTTCCTCGT+AGG + chr7_3:72017103-72017122 Msa1121920:CDS 60.0%
GGCCTACGAGGAAGAATCCG+TGG - chr7_3:72017108-72017127 None:intergenic 60.0%
! GAGGCCCGGCTTTAACGAAC+GGG - chr7_3:72017129-72017148 None:intergenic 60.0%
CAGGCTCTCTTGCAGCTGCT+GGG + chr7_3:72017176-72017195 Msa1121920:CDS 60.0%
GCGGATCGGGCTGCTTCTTA+CGG - chr7_3:72017297-72017316 None:intergenic 60.0%
! GGTTGGTCCAAGTTCACCGG+TGG + chr7_3:72017331-72017350 Msa1121920:CDS 60.0%
GCAGGCTCTCTTGCAGCTGC+TGG + chr7_3:72017175-72017194 Msa1121920:CDS 65.0%
GCAGGCTCTCTTGCAGCTGC+TGG + chr7_3:72017175-72017194 Msa1121920:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 72016081 72017686 72016081 ID=Msa1121920;Name=Msa1121920
chr7_3 mRNA 72016081 72017686 72016081 ID=Msa1121920-mRNA-1;Parent=Msa1121920;Name=Msa1121920-mRNA-1;_AED=0.02;_eAED=0.02;_QI=142|1|1|1|1|1|2|251|214
chr7_3 exon 72016081 72016375 72016081 ID=Msa1121920-mRNA-1:exon:18612;Parent=Msa1121920-mRNA-1
chr7_3 exon 72016944 72017686 72016944 ID=Msa1121920-mRNA-1:exon:18613;Parent=Msa1121920-mRNA-1
chr7_3 five_prime_UTR 72016081 72016222 72016081 ID=Msa1121920-mRNA-1:five_prime_utr;Parent=Msa1121920-mRNA-1
chr7_3 CDS 72016223 72016375 72016223 ID=Msa1121920-mRNA-1:cds;Parent=Msa1121920-mRNA-1
chr7_3 CDS 72016944 72017435 72016944 ID=Msa1121920-mRNA-1:cds;Parent=Msa1121920-mRNA-1
chr7_3 three_prime_UTR 72017436 72017686 72017436 ID=Msa1121920-mRNA-1:three_prime_utr;Parent=Msa1121920-mRNA-1
Gene Sequence

>Msa1121920

ATGGCAGCTGCTTCTCCTATGGCAAGCCAACTCAAGTCCAGCTTCACTAGACCTTTGGTCACACCTAGGGGACTTTGTGGCTCTTCCCCACTCCATCAATTGCCTTCTAGAAGGCAATTTAACTTCACTGTTAAGGCAATCCAATCTGAAAAGCAAAATTACCAAGTGATTCAACCAATCAACGGTGACCCATTCATTGGAAGCCTTGAAACTCCAGTTACATCAAGCCCACTTGTTGCATGGTACCTCTCCAACCTACCAGGCTACAGAACTGCAGTGAACCCACTACTTAGGGGAATTGAAGTCGGCTTAGCCCACGGATTCTTCCTCGTAGGCCCGTTCGTTAAAGCCGGGCCTCTAAGGAACACCGAATATGCCGGATCAGCAGGCTCTCTTGCAGCTGCTGGGCTTATTGTTATCCTAAGCATTTGCCTTACAATCTATGGAGTTTCATCATTCAATGAAGGTGATGCATCAACTGCTCCATCTTTGACCTTAACGGGCCGTAAGAAGCAGCCCGATCCGCTCCAAACAGCTGATGGTTGGTCCAAGTTCACCGGTGGGTTTTTCTTTGGAGGAATTTCTGGTGTTACTTGGGCTTACTTCCTTCTATATGTTTTGGATCTTCCATACTTTGTTAAGTAA

Protein sequence

>Msa1121920

MAAASPMASQLKSSFTRPLVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKQNYQVIQPINGDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFFLVGPFVKAGPLRNTEYAGSAGSLAAAGLIVILSICLTIYGVSSFNEGDASTAPSLTLTGRKKQPDPLQTADGWSKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK*