AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0011910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0011910 MtrunA17_Chr1g0160461 99.839 621 1 0 1 621 1 621 0.0 1275
Msa0011910 MtrunA17_Chr4g0044181 77.877 669 90 15 1 621 1 659 0.0 975
Msa0011910 MtrunA17_Chr6g0478431 63.281 640 180 13 1 621 1 604 0.0 759
Msa0011910 MtrunA17_Chr7g0255941 63.323 638 170 14 1 621 1 591 0.0 736
Msa0011910 MtrunA17_Chr4g0071571 58.779 655 206 12 1 621 1 625 0.0 713
Msa0011910 MtrunA17_Chr8g0393111 57.235 622 130 15 1 591 1 517 0.0 628
Msa0011910 MtrunA17_Chr1g0159341 47.943 632 213 19 1 621 1 527 2.13e-166 485
Msa0011910 MtrunA17_Chr4g0071551 74.178 213 54 1 1 212 1 213 7.42e-114 339
Msa0011910 MtrunA17_Chr2g0298971 49.402 251 102 5 1 248 1 229 4.77e-74 246
Msa0011910 MtrunA17_Chr2g0298971 39.271 247 101 5 401 600 273 517 3.57e-45 168
Msa0011910 MtrunA17_Chr4g0071561 72.727 154 42 0 444 597 163 316 2.95e-73 238
Msa0011910 MtrunA17_Chr7g0216571 67.089 158 52 0 464 621 210 367 2.32e-65 219
Msa0011910 MtrunA17_Chr7g0216571 55.696 158 70 0 1 158 12 169 2.10e-52 184
Msa0011910 MtrunA17_Chr6g0452821 63.190 163 58 1 461 621 198 360 7.52e-63 212
Msa0011910 MtrunA17_Chr6g0452821 56.329 158 68 1 1 157 1 158 6.40e-51 180
Msa0011910 MtrunA17_Chr7g0249141 53.289 152 71 0 468 619 208 359 1.09e-51 182
Msa0011910 MtrunA17_Chr7g0249141 51.613 155 75 0 1 155 1 155 3.29e-47 170
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0011910 AT1G70940.1 74.923 646 131 13 1 621 1 640 0.0 908
Msa0011910 AT2G01420.1 74.725 637 120 14 1 621 1 612 0.0 900
Msa0011910 AT2G01420.2 74.411 637 126 13 1 621 1 616 0.0 892
Msa0011910 AT1G23080.1 73.585 636 136 12 1 621 1 619 0.0 891
Msa0011910 AT1G23080.3 72.956 636 136 11 1 621 1 615 0.0 884
Msa0011910 AT1G23080.4 72.956 636 136 11 1 621 1 615 0.0 884
Msa0011910 AT1G23080.2 70.391 537 123 11 1 522 1 516 0.0 722
Msa0011910 AT5G57090.1 58.471 667 211 11 1 621 1 647 0.0 720
Msa0011910 AT2G01420.3 72.305 538 112 13 1 522 1 517 0.0 719
Msa0011910 AT1G73590.1 59.538 650 206 12 1 621 1 622 0.0 706
Msa0011910 AT5G57090.2 55.556 567 186 11 101 621 1 547 0.0 555
Msa0011910 AT1G77110.1 48.413 630 256 15 1 621 1 570 2.99e-180 523
Msa0011910 AT1G77110.2 47.697 608 249 15 1 599 1 548 1.06e-167 489
Msa0011910 AT5G15100.1 62.805 164 61 0 458 621 204 367 8.27e-61 207
Msa0011910 AT5G15100.1 49.153 177 80 2 1 172 1 172 1.05e-44 163
Msa0011910 AT5G16530.1 54.000 150 69 0 467 616 195 344 7.25e-51 179
Msa0011910 AT5G16530.1 52.229 157 75 0 1 157 1 157 1.06e-49 176
Msa0011910 AT5G16530.2 52.229 157 75 0 1 157 1 157 3.20e-50 177
Msa0011910 AT5G16530.2 51.825 137 66 0 464 600 192 328 3.17e-43 158

Find 225 sgRNAs with CRISPR-Local

Find 415 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACCAAGACATTCCAATTT+TGG 0.071341 1_1:-17913656 Msa0011910:CDS
GGCTTCCATTGTTTCCTTTA+AGG 0.137518 1_1:-17913912 Msa0011910:CDS
ATCTTTAAGTGTTATCATTT+TGG 0.154954 1_1:+17914423 None:intergenic
ACAATGGAAGCCGCGGTTTC+TGG 0.173798 1_1:+17913923 None:intergenic
TAATTGAAAATGAAGGAAAA+TGG 0.174220 1_1:+17914519 None:intergenic
ACTCATTCTGTGCAAAATTT+TGG 0.176459 1_1:+17914598 None:intergenic
TTGAATTGCAGGGTTATATT+TGG 0.190580 1_1:-17909688 Msa0011910:intron
ATTATATTTAGGTCTGTTTA+TGG 0.191838 1_1:-17911255 Msa0011910:intron
CGAGTCTCATTGGTCTTATT+TGG 0.206205 1_1:-17912570 Msa0011910:CDS
ATTGCCTATACCTTTGTTAT+TGG 0.219936 1_1:+17913238 None:intergenic
CCGCGACTCCGGTGGCTTTA+GGG 0.226606 1_1:+17912692 None:intergenic
TCCGCGACTCCGGTGGCTTT+AGG 0.232306 1_1:+17912691 None:intergenic
CTTCGGATTGTTCCGAATTT+CGG 0.239748 1_1:+17913318 None:intergenic
AATCTGAAGTTCATTTGATA+TGG 0.240310 1_1:+17914229 None:intergenic
CATGATAATAATAGGTAAAA+AGG 0.253119 1_1:+17909158 None:intergenic
TGCTAGTAGCACTTTCATTA+TGG 0.257436 1_1:-17914174 Msa0011910:CDS
TCATCTTGGAATTTCTAATA+TGG 0.257757 1_1:+17909384 None:intergenic
CTCAAGTGCTTCACCGGTTT+CGG 0.261627 1_1:-17913363 Msa0011910:CDS
CAAATCATTAGCCCCAAAAT+TGG 0.264008 1_1:+17913643 None:intergenic
CCTTCAAATTTCGAAGAAAA+TGG 0.266779 1_1:-17913581 Msa0011910:CDS
CTTCCTAACACTTTGGTTAT+GGG 0.267472 1_1:-17914091 Msa0011910:CDS
ACTTCCTAACACTTTGGTTA+TGG 0.272014 1_1:-17914092 Msa0011910:CDS
AACATCCGAATCGACCTTAA+AGG 0.272674 1_1:+17913898 None:intergenic
ATGTAGTAGAGTAGAGTAAT+TGG 0.282953 1_1:+17909649 None:intergenic
GACACGTCTCATACTCATTA+TGG 0.285664 1_1:-17912629 Msa0011910:CDS
ACAATAATCATGATAATAAT+AGG 0.297965 1_1:+17909150 None:intergenic
ATATGGAGACATTAGCATTA+TGG 0.309373 1_1:+17909401 None:intergenic
TTAGTAGTAGAGGAGAATTC+CGG 0.312645 1_1:+17913488 None:intergenic
TGATTATTCAGGTAGCTTAA+TGG 0.316996 1_1:-17914041 Msa0011910:CDS
TTTGGTCCCTTGTTGCCTTT+AGG 0.319465 1_1:-17912552 Msa0011910:intron
GCTATGTATGGTGATTATTC+AGG 0.323216 1_1:-17914052 Msa0011910:CDS
TCGAATAAGTGTTTGGATTA+CGG 0.336821 1_1:+17912590 None:intergenic
CCTTACTGGTCCAGCAGTTA+TGG 0.341147 1_1:-17911168 Msa0011910:CDS
GAATTCGAGCCCAACTTGTT+AGG 0.341677 1_1:+17912730 None:intergenic
TTCTCACCGGATCAATGTTC+CGG 0.355844 1_1:-17914319 Msa0011910:CDS
TCGGATGTTATGTCGTTAGA+TGG 0.360086 1_1:-17913884 Msa0011910:CDS
AAGATCATAGCAACATATAA+TGG 0.361273 1_1:+17914373 None:intergenic
TATGGAGACATTAGCATTAT+GGG 0.368773 1_1:+17909402 None:intergenic
TTATGTAGAGGAAAAGAAAT+TGG 0.368887 1_1:-17909195 Msa0011910:three_prime_UTR
ATTCCCACATGCAATGATCT+TGG 0.369808 1_1:+17911223 None:intergenic
AGAGAGCATGTAACATTGTA+AGG 0.373238 1_1:-17909339 Msa0011910:three_prime_UTR
CCTCAATGTCTTCCGAAATT+CGG 0.379629 1_1:-17913330 Msa0011910:CDS
GGAAGTTACATGTTACTGTT+AGG 0.381177 1_1:-17913820 Msa0011910:CDS
AGTTAGTTAACTAGGAGTAT+AGG 0.384939 1_1:+17914560 None:intergenic
TTTGGCACCGGATACGAATT+AGG 0.387532 1_1:+17913512 None:intergenic
TATACAAATGGTTGATAGAA+AGG 0.388340 1_1:+17909248 None:intergenic
GGTGGTCAAGAAAAGGAAAT+TGG 0.389811 1_1:-17912817 Msa0011910:CDS
GCTGATGAACATAATCAAAA+TGG 0.390186 1_1:-17913266 Msa0011910:CDS
CTATCTTCCAAAGTATGAAT+AGG 0.391219 1_1:+17909605 None:intergenic
TTCATATAAAATTATACAAA+TGG 0.391462 1_1:+17909236 None:intergenic
CCTTGAAAATTACATCATCT+TGG 0.393042 1_1:+17909370 None:intergenic
ATACTGTCTGATGCTGGTCT+TGG 0.394410 1_1:-17912300 Msa0011910:CDS
AATTGAAAATGAAGGAAAAT+GGG 0.395968 1_1:+17914520 None:intergenic
GCCCAACTTGTTAGGTCCAT+TGG 0.399378 1_1:+17912738 None:intergenic
AACACTTATTCGAGTCTCAT+TGG 0.400479 1_1:-17912580 Msa0011910:CDS
GGTGCAAGTTCTCCTAGATT+CGG 0.403944 1_1:-17913560 Msa0011910:CDS
CCTACATGTAGCTATTGTTC+AGG 0.405283 1_1:-17911108 Msa0011910:intron
GTCTCATACTCATTATGGTT+TGG 0.406117 1_1:-17912624 Msa0011910:CDS
ATTCCCATAACCAAAGTGTT+AGG 0.414160 1_1:+17914088 None:intergenic
TGGTTCTTCAGTGTATCATT+TGG 0.415072 1_1:-17914009 Msa0011910:CDS
AAGACCAGCATCAGACAGTA+TGG 0.415534 1_1:+17912302 None:intergenic
ATGGCTATAAGATTCCTTAC+TGG 0.418097 1_1:-17911182 Msa0011910:CDS
TGGTGAAATAACTAGTTAGT+AGG 0.419430 1_1:+17909500 None:intergenic
CTACTCTACTACATTCTCCT+TGG 0.419596 1_1:-17909640 Msa0011910:CDS
ATGAGACTCGAATAAGTGTT+TGG 0.420842 1_1:+17912583 None:intergenic
GTAGAGGAGAATTCCGGGTT+TGG 0.423859 1_1:+17913494 None:intergenic
AGGCCAGCACTTTCCGAAAC+CGG 0.423867 1_1:+17913350 None:intergenic
TGTTTCCTTTAAGGTCGATT+CGG 0.427917 1_1:-17913903 Msa0011910:CDS
GGTTGAAATTAGACCCTCTT+GGG 0.428239 1_1:+17913708 None:intergenic
GCCGGATAAAACCCGAATCT+AGG 0.429616 1_1:+17913548 None:intergenic
TAGTAGTAGAGGAGAATTCC+GGG 0.437495 1_1:+17913489 None:intergenic
GTGCAAGTTCTCCTAGATTC+GGG 0.439036 1_1:-17913559 Msa0011910:CDS
TTCTGTTGCTTCATTTGCCA+TGG 0.440626 1_1:-17911201 Msa0011910:CDS
GCCCCAAAATTGGAATGTCT+TGG 0.443621 1_1:+17913653 None:intergenic
TTCCCACATGCAATGATCTT+GGG 0.445777 1_1:+17911224 None:intergenic
ATTGCAGACAAAAGGTTCTC+AGG 0.450066 1_1:-17913414 Msa0011910:CDS
AGTCAAATTATATCTAGAAA+TGG 0.450786 1_1:-17909274 Msa0011910:three_prime_UTR
TTAGGCACAGTTTGCGCTGC+CGG 0.451420 1_1:+17913530 None:intergenic
TCTTCGAAATTTGAAGGTCT+AGG 0.454518 1_1:+17913587 None:intergenic
AAGGAAAATGGGAAAGAAAA+CGG 0.454640 1_1:+17914531 None:intergenic
CCTTTGTTAATTGCTATGTA+TGG 0.454996 1_1:-17914064 Msa0011910:CDS
AGGGTCTAATTTCAACCATC+AGG 0.456670 1_1:-17913702 Msa0011910:CDS
AAGGTGTGTCAGAGAAAGTA+GGG 0.458240 1_1:+17914695 None:intergenic
CCCAACTTGTTAGGTCCATT+GGG 0.459861 1_1:+17912739 None:intergenic
AAATTTATAATTGAAAATGA+AGG 0.461152 1_1:+17914512 None:intergenic
CAGGTTCAATTGCAGACAAA+AGG 0.466019 1_1:-17913422 Msa0011910:CDS
GAAGGTGTGTCAGAGAAAGT+AGG 0.466090 1_1:+17914694 None:intergenic
AAGAGGACTTCAAGTTCAAT+GGG 0.468366 1_1:-17912789 Msa0011910:CDS
TCACCGGTTTCGGAAAGTGC+TGG 0.470039 1_1:-17913353 Msa0011910:CDS
CCTACGGTTCGGTCCGTTGG+TGG 0.474399 1_1:-17914348 Msa0011910:CDS
ATCAACACTTCCTAACACTT+TGG 0.475928 1_1:-17914098 Msa0011910:CDS
TGCTTACGCTGTACTAAGAA+TGG 0.477801 1_1:+17909809 None:intergenic
CTTCACAGGTTTAGTAGTAG+AGG 0.477907 1_1:+17913478 None:intergenic
GGAATGGCTATGTTTAGCTT+AGG 0.479154 1_1:-17912279 Msa0011910:intron
TTCGTATCCGGTGCCAAACC+CGG 0.479487 1_1:-17913507 Msa0011910:CDS
TAGCCTACGGTTCGGTCCGT+TGG 0.480227 1_1:-17914351 Msa0011910:CDS
GATCTCCTTAGCACCCTCTT+CGG 0.482409 1_1:+17913301 None:intergenic
TAGCTTAATGGTTCAAGTTG+TGG 0.483646 1_1:-17914029 Msa0011910:CDS
AAAGGAAATTGGTGGGGAAG+AGG 0.484370 1_1:-17912806 Msa0011910:CDS
GTTCATTTGATATGGATTGT+TGG 0.488470 1_1:+17914237 None:intergenic
AACTGTGCCTAATTCGTATC+CGG 0.489229 1_1:-17913519 Msa0011910:CDS
CCGAATTTCGGAAGACATTG+AGG 0.489492 1_1:+17913330 None:intergenic
GGTTGGTTAGTTAGTTAACT+AGG 0.491382 1_1:+17914552 None:intergenic
AATTGAAGGTGGTCAAGAAA+AGG 0.491402 1_1:-17912824 Msa0011910:intron
CCCAATGGACCTAACAAGTT+GGG 0.493053 1_1:-17912739 Msa0011910:CDS
AAGAGGGTGCTAAGGAGATC+AGG 0.493248 1_1:-17913298 Msa0011910:CDS
GTGGAGCTCAAGTGCTTCAC+CGG 0.493646 1_1:-17913369 Msa0011910:CDS
GAAGAGGACTTCAAGTTCAA+TGG 0.495292 1_1:-17912790 Msa0011910:CDS
GATGCATCAGTTGGTGATGA+TGG 0.503763 1_1:-17913842 Msa0011910:CDS
GTTGAATGGCATGTGAAGAA+AGG 0.505360 1_1:+17914477 None:intergenic
AGGAGTACTTGTAATAGTAC+TGG 0.508743 1_1:+17914633 None:intergenic
CTTGAAACTGATGCATCAGT+TGG 0.511837 1_1:-17913851 Msa0011910:CDS
TCAGCTCCAGTCAAATTTGA+CGG 0.512431 1_1:+17913752 None:intergenic
AAATTTGAAGGTCTAGGAGT+TGG 0.515304 1_1:+17913593 None:intergenic
TACGCTGTACTAAGAATGGC+TGG 0.515311 1_1:+17909813 None:intergenic
ATACAAATGGTTGATAGAAA+GGG 0.515594 1_1:+17909249 None:intergenic
GAAGCTGCTGCCATAACTGC+TGG 0.516874 1_1:+17911158 None:intergenic
CGCGACGAAGCGGTTTATAC+CGG 0.520411 1_1:+17914300 None:intergenic
TCATACTCATTATGGTTTGG+AGG 0.520930 1_1:-17912621 Msa0011910:CDS
GAGAATTCCGGGTTTGGCAC+CGG 0.521354 1_1:+17913500 None:intergenic
CTTGGAATGACAATTTCTGT+TGG 0.522627 1_1:+17909480 None:intergenic
TGGTTGAAATTAGACCCTCT+TGG 0.523061 1_1:+17913707 None:intergenic
CCCTAAAGCCACCGGAGTCG+CGG 0.523391 1_1:-17912692 Msa0011910:CDS
CCGCGACCGTCAAATTTGAC+TGG 0.525623 1_1:-17913758 Msa0011910:CDS
GGTGAAATAACTAGTTAGTA+GGG 0.527381 1_1:+17909501 None:intergenic
TCTGTCCAGTCTTCTTCTAG+AGG 0.530364 1_1:-17913617 Msa0011910:CDS
TCTATCGCCGTTGGCCTCCG+TGG 0.532052 1_1:-17911137 Msa0011910:CDS
GTCTGATGCTGGTCTTGGAA+TGG 0.532632 1_1:-17912295 Msa0011910:CDS
TTGGTCCTCTAGAAGAAGAC+TGG 0.534857 1_1:+17913612 None:intergenic
ATTTGTAATTGTAGAGTACA+AGG 0.536418 1_1:+17914747 None:intergenic
AGTAGAGTAGAGTAATTGGA+AGG 0.536719 1_1:+17909653 None:intergenic
ATTTCCATACTGTCTGATGC+TGG 0.538744 1_1:-17912306 Msa0011910:CDS
CTATCGCCGTTGGCCTCCGT+GGG 0.540857 1_1:-17911136 Msa0011910:CDS
ACCCAATGGACCTAACAAGT+TGG 0.543856 1_1:-17912740 Msa0011910:CDS
CCATAACTGCTGGACCAGTA+AGG 0.545402 1_1:+17911168 None:intergenic
GACACTTGAATCCGCGACTC+CGG 0.551443 1_1:+17912681 None:intergenic
TCTTGGTTGATAACCCATCA+TGG 0.553358 1_1:+17913670 None:intergenic
ATGTTACATGCTCTCTCTTG+AGG 0.554694 1_1:+17909346 None:intergenic
GTGGCTTTAGGGTGGAGCTC+CGG 0.554827 1_1:+17912703 None:intergenic
GCAGCAGCTTCTATCGCCGT+TGG 0.558133 1_1:-17911146 Msa0011910:CDS
TTTGATGCCGCAACAACCGC+AGG 0.558725 1_1:-17913441 Msa0011910:CDS
TTTATACCGGAACATTGATC+CGG 0.563596 1_1:+17914313 None:intergenic
GATTGTTGGTTGAGATGAAG+TGG 0.564135 1_1:+17914251 None:intergenic
TATGATCTTAGCCTACGGTT+CGG 0.565033 1_1:-17914359 Msa0011910:CDS
TGTCGGAAAACTCATGCCTC+CGG 0.565467 1_1:-17912662 Msa0011910:CDS
CCAGTCAAATTTGACGGTCG+CGG 0.567450 1_1:+17913758 None:intergenic
GTCAAGAAAAGGAAATTGGT+GGG 0.568661 1_1:-17912813 Msa0011910:CDS
AAAATGGGAAAGAAAACGGT+TGG 0.570567 1_1:+17914535 None:intergenic
CTTCAAGTTCAATGGGGTGA+AGG 0.574592 1_1:-17912782 Msa0011910:CDS
GAGGGTCCCACGGAGGCCAA+CGG 0.576668 1_1:+17911130 None:intergenic
AATTCGGAACAATCCGAAGA+GGG 0.578362 1_1:-17913314 Msa0011910:CDS
GAGCTCCACCCTAAAGCCAC+CGG 0.581241 1_1:-17912700 Msa0011910:CDS
GAGAGCATGTAACATTGTAA+GGG 0.581953 1_1:-17909338 Msa0011910:three_prime_UTR
GAAATTAGACCCTCTTGGGG+TGG 0.582116 1_1:+17913712 None:intergenic
CAATAGGCTGCACTTCCACA+AGG 0.583775 1_1:-17909876 Msa0011910:intron
AAAAGAGGAAAACATGGGAA+TGG 0.585102 1_1:-17909309 Msa0011910:three_prime_UTR
GAACAATAGCTACATGTAGG+AGG 0.585385 1_1:+17911111 None:intergenic
ACTTGAATCCGCGACTCCGG+TGG 0.585921 1_1:+17912684 None:intergenic
AGTTAACTAGGAGTATAGGA+AGG 0.586720 1_1:+17914564 None:intergenic
GTGGAATGAAAGGAGAGGTA+CGG 0.587057 1_1:+17914270 None:intergenic
AAGTTCAATGGGGTGAAGGT+AGG 0.588094 1_1:-17912778 Msa0011910:CDS
GAACAAGGAGAAGGACCCAA+TGG 0.588943 1_1:-17912754 Msa0011910:CDS
CTGTACTAAGAATGGCTGGA+TGG 0.589732 1_1:+17909817 None:intergenic
AGTAAGGAATCTTATAGCCA+TGG 0.592444 1_1:+17911184 None:intergenic
GGGGTGAAGGTAGGAGAACA+AGG 0.592671 1_1:-17912769 Msa0011910:CDS
ATCGACCTTAAAGGAAACAA+TGG 0.593244 1_1:+17913907 None:intergenic
ACAATCCGAAGAGGGTGCTA+AGG 0.593701 1_1:-17913306 Msa0011910:CDS
GTAGAGTAGAGTAATTGGAA+GGG 0.595548 1_1:+17909654 None:intergenic
TTACACTGTCTTAACAGCAG+TGG 0.596282 1_1:-17914398 Msa0011910:CDS
TTGAGATGAAGTGGAATGAA+AGG 0.597744 1_1:+17914260 None:intergenic
ATGCATCAGTTGGTGATGAT+GGG 0.598176 1_1:-17913841 Msa0011910:CDS
TCATGGAGTAAAACTCCTGA+TGG 0.598436 1_1:+17913687 None:intergenic
GTTGCTATGATCTTAGCCTA+CGG 0.598914 1_1:-17914364 Msa0011910:CDS
AATTGAACCTGCGGTTGTTG+CGG 0.599082 1_1:+17913434 None:intergenic
AGACGTGTCATGACGCTCGC+CGG 0.600055 1_1:+17912643 None:intergenic
AGACATAAAAGAGGAAAACA+TGG 0.600168 1_1:-17909315 Msa0011910:three_prime_UTR
CAACCCAAGATCATTGCATG+TGG 0.601268 1_1:-17911227 Msa0011910:CDS
TTGAGGAAGTAATTATGTAG+AGG 0.602465 1_1:-17909207 Msa0011910:three_prime_UTR
CCTGAACAATAGCTACATGT+AGG 0.602969 1_1:+17911108 None:intergenic
CGACTCCGGTGGCTTTAGGG+TGG 0.603330 1_1:+17912695 None:intergenic
GTATAGAAACTAGAAAGAGA+AGG 0.606056 1_1:+17914676 None:intergenic
AAGGTAGGAGAACAAGGAGA+AGG 0.608019 1_1:-17912763 Msa0011910:CDS
GGTCAAGAAAAGGAAATTGG+TGG 0.613131 1_1:-17912814 Msa0011910:CDS
ATACCTACCTAAAGGCAACA+AGG 0.617062 1_1:+17912545 None:intergenic
AACAATAGCTACATGTAGGA+GGG 0.617085 1_1:+17911112 None:intergenic
GGAGTCGCGGATTCAAGTGT+CGG 0.620160 1_1:-17912679 Msa0011910:CDS
TACCTACCTAAAGGCAACAA+GGG 0.621757 1_1:+17912546 None:intergenic
CGGTATAAACCGCTTCGTCG+CGG 0.622533 1_1:-17914299 Msa0011910:CDS
TGGAAGATAGTAAACATGCA+TGG 0.626487 1_1:-17909592 Msa0011910:three_prime_UTR
CCACCAACGGACCGAACCGT+AGG 0.627762 1_1:+17914348 None:intergenic
AATGGTGAAACCAATAACAA+AGG 0.629421 1_1:-17913248 Msa0011910:intron
AAAGGAAACAATGGAAGCCG+CGG 0.630714 1_1:+17913916 None:intergenic
GAAGTATTCTATTCTTCACA+AGG 0.632098 1_1:-17909558 Msa0011910:three_prime_UTR
ATGAAGTGGAATGAAAGGAG+AGG 0.632775 1_1:+17914265 None:intergenic
TTTGTCTGCAATTGAACCTG+CGG 0.633224 1_1:+17913425 None:intergenic
AAGAGTTGCATATGTTTGTG+TGG 0.633927 1_1:-17913388 Msa0011910:CDS
CGGCGAAAACCGCGACGAAG+CGG 0.635295 1_1:+17914290 None:intergenic
GGTTTGTGAGACTAAGATGA+GGG 0.635837 1_1:+17914654 None:intergenic
GTCTCAGCTCCACCCCAAGA+GGG 0.636397 1_1:-17913721 Msa0011910:CDS
TGCTAAGGAGATCAGGATGG+TGG 0.637132 1_1:-17913291 Msa0011910:CDS
GACATAAAAGAGGAAAACAT+GGG 0.639368 1_1:-17909314 Msa0011910:three_prime_UTR
CGTGTCATGACGCTCGCCGG+AGG 0.639607 1_1:+17912646 None:intergenic
TTGTAAGGGAGACATAAAAG+AGG 0.640038 1_1:-17909324 Msa0011910:three_prime_UTR
TAAGGAGATCAGGATGGTGG+TGG 0.640923 1_1:-17913288 Msa0011910:CDS
GTGAGAAAATCTTCCACCAA+CGG 0.645716 1_1:+17914335 None:intergenic
GTTGAAATTAGACCCTCTTG+GGG 0.655412 1_1:+17913709 None:intergenic
AACCCAAGATCATTGCATGT+GGG 0.657323 1_1:-17911226 Msa0011910:CDS
TCAAGAAAAGGAAATTGGTG+GGG 0.659437 1_1:-17912812 Msa0011910:CDS
AGTCTCAGCTCCACCCCAAG+AGG 0.662338 1_1:-17913722 Msa0011910:CDS
TTAGGAAGTCTAACGCGTCG+CGG 0.669107 1_1:-17913802 Msa0011910:CDS
TGGTTTGTGAGACTAAGATG+AGG 0.671362 1_1:+17914653 None:intergenic
GGGTGCTAAGGAGATCAGGA+TGG 0.673250 1_1:-17913294 Msa0011910:CDS
AAATTCGGAACAATCCGAAG+AGG 0.673663 1_1:-17913315 Msa0011910:CDS
CTACATGTAGGAGGGTCCCA+CGG 0.676202 1_1:+17911120 None:intergenic
ACAAATGGAACAATCCCTTG+TGG 0.676637 1_1:+17909861 None:intergenic
GGAGCAGTTTCCAGAAACCG+CGG 0.676934 1_1:-17913933 Msa0011910:CDS
TGATTAAAAGCTTAGCACCA+CGG 0.678635 1_1:+17913957 None:intergenic
CCATACATAGCAATTAACAA+AGG 0.679313 1_1:+17914064 None:intergenic
AGGTGTGTCAGAGAAAGTAG+GGG 0.684117 1_1:+17914696 None:intergenic
GGAAGTCTAACGCGTCGCGG+AGG 0.686204 1_1:-17913799 Msa0011910:CDS
GGTGTGTCAGAGAAAGTAGG+GGG 0.690706 1_1:+17914697 None:intergenic
AATAGGCTGCACTTCCACAA+GGG 0.700469 1_1:-17909875 Msa0011910:intron
GTTGGGCTCGAATTCAACGC+CGG 0.711535 1_1:-17912722 Msa0011910:CDS
CATGTAGGAGGGTCCCACGG+AGG 0.715446 1_1:+17911123 None:intergenic
AGAGGACTTCAAGTTCAATG+GGG 0.771569 1_1:-17912788 Msa0011910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG - chr1_1:17912791-17912810 Msa0011910:CDS 0.0%
!! TATATATATATATATATATA+GGG - chr1_1:17912792-17912811 Msa0011910:CDS 0.0%
!! ATTATATATATATATATATA+GGG + chr1_1:17913438-17913457 None:intergenic 0.0%
!! TATTATATATATATATATAT+AGG + chr1_1:17913439-17913458 None:intergenic 0.0%
!! AAATTTATAATTGAAAATGA+AGG + chr1_1:17909338-17909357 None:intergenic 10.0%
!! TAATTTAATTCTAATATAGT+TGG - chr1_1:17910789-17910808 Msa0011910:intron 10.0%
!! ATAAAAAATTAAAAGAAGTT+TGG - chr1_1:17911371-17911390 Msa0011910:intron 10.0%
!!! ATGTTGATAATTATAAAAAA+AGG - chr1_1:17911698-17911717 Msa0011910:intron 10.0%
!! ATAAAAGAAAATTAGTATAT+AGG + chr1_1:17912045-17912064 None:intergenic 10.0%
!! CATATTTGTTTATTATATTT+AGG - chr1_1:17912581-17912600 Msa0011910:CDS 10.0%
!!! TTTATTTTTTTTATTTGAGA+AGG - chr1_1:17914321-17914340 Msa0011910:CDS 10.0%
!! TTCATATAAAATTATACAAA+TGG + chr1_1:17914614-17914633 None:intergenic 10.0%
!!! GTATAATTTTATATGAAAAT+CGG - chr1_1:17914617-17914636 Msa0011910:five_prime_UTR 10.0%
!! TTGTTAGATTAATTTAACAA+CGG + chr1_1:17910739-17910758 None:intergenic 15.0%
!! TTGTTAAATTAATCTAACAA+CGG - chr1_1:17910739-17910758 Msa0011910:intron 15.0%
!!! ATTGATTTCTCTATTATTTT+AGG + chr1_1:17911523-17911542 None:intergenic 15.0%
!!! TTGATAATTATAAAAAAAGG+TGG - chr1_1:17911701-17911720 Msa0011910:intron 15.0%
!! TTAGAAATATATCAACAAAA+GGG + chr1_1:17912440-17912459 None:intergenic 15.0%
!! TTTAGAAATATATCAACAAA+AGG + chr1_1:17912441-17912460 None:intergenic 15.0%
!! ATTCATTTGTCTTAAATTAT+TGG + chr1_1:17912468-17912487 None:intergenic 15.0%
!! ATGTGATTGAAAAATAAATA+AGG + chr1_1:17914073-17914092 None:intergenic 15.0%
!!! TTTTTTATAAATTGAATTGC+AGG - chr1_1:17914148-17914167 Msa0011910:CDS 15.0%
!!! TTTTTATAAATTGAATTGCA+GGG - chr1_1:17914149-17914168 Msa0011910:CDS 15.0%
!! ACAATAATCATGATAATAAT+AGG + chr1_1:17914700-17914719 None:intergenic 15.0%
!! AATTGAAAATGAAGGAAAAT+GGG + chr1_1:17909330-17909349 None:intergenic 20.0%
!! TAATTGAAAATGAAGGAAAA+TGG + chr1_1:17909331-17909350 None:intergenic 20.0%
!!! ATCATTTTGGATTTTTTTGT+TGG + chr1_1:17909414-17909433 None:intergenic 20.0%
!!! ATCTTTAAGTGTTATCATTT+TGG + chr1_1:17909427-17909446 None:intergenic 20.0%
!! GTAATGATAAGTTTCTAATT+TGG - chr1_1:17910997-17911016 Msa0011910:intron 20.0%
!! TTCTAATTTGGATAAATTGA+AGG - chr1_1:17911009-17911028 Msa0011910:intron 20.0%
!! AGTTATGTAACTATTATTGT+TGG - chr1_1:17911466-17911485 Msa0011910:intron 20.0%
!! GAAATCTTTGTTAATTAAAG+TGG - chr1_1:17912195-17912214 Msa0011910:intron 20.0%
!! TTGTTAATTAAAGTGGTTAA+TGG - chr1_1:17912202-17912221 Msa0011910:intron 20.0%
!!! AATAAGTTTTATAACACTTG+AGG + chr1_1:17912309-17912328 None:intergenic 20.0%
!! AAAGAAGAATAAACAAAATG+AGG + chr1_1:17912531-17912550 None:intergenic 20.0%
!!! TGTTTATTCTTCTTTTTCTA+AGG - chr1_1:17912536-17912555 Msa0011910:intron 20.0%
!! ATTATATTTAGGTCTGTTTA+TGG - chr1_1:17912592-17912611 Msa0011910:CDS 20.0%
!! AAGTTAATAAATACACCTTA+AGG + chr1_1:17913050-17913069 None:intergenic 20.0%
!! AACCCCATATATATATATAT+AGG - chr1_1:17913127-17913146 Msa0011910:intron 20.0%
!! ACCCCATATATATATATATA+GGG - chr1_1:17913128-17913147 Msa0011910:intron 20.0%
!! ACCCCTATATATATATATAT+GGG + chr1_1:17913133-17913152 None:intergenic 20.0%
!! AACCCCTATATATATATATA+TGG + chr1_1:17913134-17913153 None:intergenic 20.0%
!! TGAATCCTAAGTAAATTTAA+TGG - chr1_1:17913736-17913755 Msa0011910:CDS 20.0%
!! GTATTCCATTAAATTTACTT+AGG + chr1_1:17913744-17913763 None:intergenic 20.0%
!! ATTATGAGATTGTTAACTTA+TGG - chr1_1:17913929-17913948 Msa0011910:CDS 20.0%
!! AGTCAAATTATATCTAGAAA+TGG - chr1_1:17914573-17914592 Msa0011910:five_prime_UTR 20.0%
!! CATGATAATAATAGGTAAAA+AGG + chr1_1:17914692-17914711 None:intergenic 20.0%
! ATTTGTAATTGTAGAGTACA+AGG + chr1_1:17909103-17909122 None:intergenic 25.0%
!!! TTTTAGTGAAGTTTGTTGAA+TGG + chr1_1:17909387-17909406 None:intergenic 25.0%
! AAGATCATAGCAACATATAA+TGG + chr1_1:17909477-17909496 None:intergenic 25.0%
!! AATCTGAAGTTCATTTGATA+TGG + chr1_1:17909621-17909640 None:intergenic 25.0%
! CTAAAAATGGCAATTTAGAA+TGG - chr1_1:17909706-17909725 Msa0011910:intron 25.0%
!! TTTTAAATTGCACCTACAAT+CGG - chr1_1:17910665-17910684 Msa0011910:intron 25.0%
! CGGGTTAATTATAGTTATAA+CGG - chr1_1:17910685-17910704 Msa0011910:intron 25.0%
! AATCAATGACTAATCATTGT+TGG + chr1_1:17910889-17910908 None:intergenic 25.0%
! TAATTTGGATAAATTGAAGG+TGG - chr1_1:17911012-17911031 Msa0011910:intron 25.0%
! ACTTTATAATACCTACCTAA+AGG + chr1_1:17911313-17911332 None:intergenic 25.0%
! AAGAATTATTGAGGAGAAAT+TGG + chr1_1:17911618-17911637 None:intergenic 25.0%
! ATGTGATAGAAGAATTATTG+AGG + chr1_1:17911627-17911646 None:intergenic 25.0%
! TGGTAGTAAAGTAAAATGAA+TGG - chr1_1:17911721-17911740 Msa0011910:intron 25.0%
!! ATGATTGAATTTGAGAGTAT+GGG - chr1_1:17911755-17911774 Msa0011910:intron 25.0%
! GTATGAATATGAGAAAAGTA+TGG - chr1_1:17911781-17911800 Msa0011910:intron 25.0%
!! ATATGAGAAAAGTATGGATT+TGG - chr1_1:17911787-17911806 Msa0011910:intron 25.0%
!! TATGAGAAAAGTATGGATTT+GGG - chr1_1:17911788-17911807 Msa0011910:intron 25.0%
! AACAAACATCACCAATATAA+TGG + chr1_1:17911843-17911862 None:intergenic 25.0%
!! AGGTAACGTAGTTTAAAATT+GGG + chr1_1:17911939-17911958 None:intergenic 25.0%
!! AAGGTAACGTAGTTTAAAAT+TGG + chr1_1:17911940-17911959 None:intergenic 25.0%
! TATATCTTAAAAGACACACA+TGG + chr1_1:17912117-17912136 None:intergenic 25.0%
!!! TTTTTTAAATATCGGAGAAG+TGG - chr1_1:17912171-17912190 Msa0011910:intron 25.0%
! AAAAATGTGACACTTCTTAT+GGG + chr1_1:17912366-17912385 None:intergenic 25.0%
! TAAAAATGTGACACTTCTTA+TGG + chr1_1:17912367-17912386 None:intergenic 25.0%
! CCCCTATATATATATATATG+GGG + chr1_1:17913132-17913151 None:intergenic 25.0%
! CCCCATATATATATATATAG+GGG - chr1_1:17913129-17913148 Msa0011910:intron 25.0%
!! ACACCTTCTAAAAAATAAGT+GGG - chr1_1:17913250-17913269 Msa0011910:CDS 25.0%
!! ACACCTTCTAAAAAATAAGT+GGG + chr1_1:17913250-17913269 None:intergenic 25.0%
! AAGTTGTTAAATACACCTTA+AGG + chr1_1:17913355-17913374 None:intergenic 25.0%
! ACACCTTAATAAAAACTAGT+GGG - chr1_1:17913398-17913417 Msa0011910:CDS 25.0%
!! ATATATATATAGGGTTTGCT+AGG + chr1_1:17913429-17913448 None:intergenic 25.0%
! TTCTTTATTCAGTGTCTATT+GGG + chr1_1:17913514-17913533 None:intergenic 25.0%
! TGTAGCTCATATAGTTAAAA+AGG + chr1_1:17913658-17913677 None:intergenic 25.0%
! TGTCAATAAGCATTTCTATT+TGG - chr1_1:17913795-17913814 Msa0011910:CDS 25.0%
!! ATATTGTCATGTTTTGTGAT+AGG + chr1_1:17913900-17913919 None:intergenic 25.0%
! ACAAAACATGACAATATTGA+AGG - chr1_1:17913903-17913922 Msa0011910:CDS 25.0%
! AAAAACACCTATTCATACTT+TGG - chr1_1:17914235-17914254 Msa0011910:CDS 25.0%
!! ATTTTTCTTTGTTGGAAACT+TGG + chr1_1:17914388-17914407 None:intergenic 25.0%
! AAGTTTCCAACAAAGAAAAA+TGG - chr1_1:17914387-17914406 Msa0011910:CDS 25.0%
! AGTTTCCAACAAAGAAAAAT+GGG - chr1_1:17914388-17914407 Msa0011910:CDS 25.0%
!!! AAATTCCCATTTTTCTTTGT+TGG + chr1_1:17914396-17914415 None:intergenic 25.0%
!! GAATTTGAGAAAAAGTTGAT+AGG - chr1_1:17914410-17914429 Msa0011910:CDS 25.0%
! TCATCTTGGAATTTCTAATA+TGG + chr1_1:17914466-17914485 None:intergenic 25.0%
!!! ATACAAATGGTTGATAGAAA+GGG + chr1_1:17914601-17914620 None:intergenic 25.0%
!!! TATACAAATGGTTGATAGAA+AGG + chr1_1:17914602-17914621 None:intergenic 25.0%
!! TTTTATATGAAAATCGGTTG+AGG - chr1_1:17914623-17914642 Msa0011910:five_prime_UTR 25.0%
! TTATGTAGAGGAAAAGAAAT+TGG - chr1_1:17914652-17914671 Msa0011910:five_prime_UTR 25.0%
GTATAGAAACTAGAAAGAGA+AGG + chr1_1:17909174-17909193 None:intergenic 30.0%
! ACTCATTCTGTGCAAAATTT+TGG + chr1_1:17909252-17909271 None:intergenic 30.0%
! AGTTAGTTAACTAGGAGTAT+AGG + chr1_1:17909290-17909309 None:intergenic 30.0%
AAGGAAAATGGGAAAGAAAA+CGG + chr1_1:17909319-17909338 None:intergenic 30.0%
! GTTCATTTGATATGGATTGT+TGG + chr1_1:17909613-17909632 None:intergenic 30.0%
TGGACATTGTTCACTAAAAA+TGG - chr1_1:17909693-17909712 Msa0011910:intron 30.0%
CCATACATAGCAATTAACAA+AGG + chr1_1:17909786-17909805 None:intergenic 30.0%
CCTTTGTTAATTGCTATGTA+TGG - chr1_1:17909783-17909802 Msa0011910:intron 30.0%
TGATTATTCAGGTAGCTTAA+TGG - chr1_1:17909806-17909825 Msa0011910:intron 30.0%
! AACCAAGACATTCCAATTTT+GGG - chr1_1:17910192-17910211 Msa0011910:intron 30.0%
! CCATTTTCTTCGAAATTTGA+AGG + chr1_1:17910269-17910288 None:intergenic 30.0%
CCTTCAAATTTCGAAGAAAA+TGG - chr1_1:17910266-17910285 Msa0011910:intron 30.0%
!! TTTTGATTCTGATTCTTCAC+AGG + chr1_1:17910386-17910405 None:intergenic 30.0%
GCTGATGAACATAATCAAAA+TGG - chr1_1:17910581-17910600 Msa0011910:intron 30.0%
AATGGTGAAACCAATAACAA+AGG - chr1_1:17910599-17910618 Msa0011910:intron 30.0%
! GAAACCAATAACAAAGGTAT+AGG - chr1_1:17910605-17910624 Msa0011910:intron 30.0%
! ATTGCCTATACCTTTGTTAT+TGG + chr1_1:17910612-17910631 None:intergenic 30.0%
! TAACAAAGGTATAGGCAATT+AGG - chr1_1:17910613-17910632 Msa0011910:intron 30.0%
TTTAAATTGCACCTACAATC+GGG - chr1_1:17910666-17910685 Msa0011910:intron 30.0%
ACTATAATTAACCCGATTGT+AGG + chr1_1:17910680-17910699 None:intergenic 30.0%
AGGTTTAATCTTAGAACCAA+TGG + chr1_1:17910842-17910861 None:intergenic 30.0%
TTAAACCTAGTATATTCCGA+AGG - chr1_1:17910854-17910873 Msa0011910:intron 30.0%
TCGAATAAGTGTTTGGATTA+CGG + chr1_1:17911260-17911279 None:intergenic 30.0%
TTGAGGAGAAATTGGATAAA+TGG + chr1_1:17911610-17911629 None:intergenic 30.0%
ACTCTCAAATTCAATCATGT+TGG + chr1_1:17911753-17911772 None:intergenic 30.0%
CATGATTGAATTTGAGAGTA+TGG - chr1_1:17911754-17911773 Msa0011910:intron 30.0%
! ATGAGAAAAGTATGGATTTG+GGG - chr1_1:17911789-17911808 Msa0011910:intron 30.0%
! AACATCACCAATATAATGGA+TGG + chr1_1:17911839-17911858 None:intergenic 30.0%
TCAACCACTATGGTTAATTA+GGG + chr1_1:17912003-17912022 None:intergenic 30.0%
TTCAACCACTATGGTTAATT+AGG + chr1_1:17912004-17912023 None:intergenic 30.0%
AACCATAGTGGTTGAAATAA+TGG - chr1_1:17912008-17912027 Msa0011910:intron 30.0%
TTCCATTATTTCAACCACTA+TGG + chr1_1:17912013-17912032 None:intergenic 30.0%
GTTTAAATTTGCAGCTAAGA+CGG + chr1_1:17912239-17912258 None:intergenic 30.0%
ATATCAACAAAAGGGTAAAG+TGG + chr1_1:17912432-17912451 None:intergenic 30.0%
!!! TAAGGTTTAGTTTTACTGCT+TGG - chr1_1:17912554-17912573 Msa0011910:CDS 30.0%
GCAAGTGAATAACTAAAAAG+TGG + chr1_1:17912918-17912937 None:intergenic 30.0%
! TACTCCTTCTAAAAAGTAAG+TGG - chr1_1:17912943-17912962 Msa0011910:intron 30.0%
! ACTCCTTCTAAAAAGTAAGT+GGG - chr1_1:17912944-17912963 Msa0011910:intron 30.0%
ACCTTCTAACAAAAACAAGT+GGG + chr1_1:17913009-17913028 None:intergenic 30.0%
TTATAGCAACATACACCTTA+AGG - chr1_1:17913032-17913051 Msa0011910:intron 30.0%
AAGTAGTTAAATGCACCTTA+AGG + chr1_1:17913208-17913227 None:intergenic 30.0%
! CACACCTTCTAAAAAATAAG+TGG - chr1_1:17913249-17913268 Msa0011910:CDS 30.0%
!!! ACACCCACTTATTTTTTAGA+AGG + chr1_1:17913309-17913328 None:intergenic 30.0%
!!! ACACCCACTTATTTTTTAGA+AGG - chr1_1:17913309-17913328 Msa0011910:CDS 30.0%
! CACACCTTCTAAAAAATAAG+TGG + chr1_1:17913249-17913268 None:intergenic 30.0%
! TTTTAGCAACATTCACCTTA+AGG - chr1_1:17913337-17913356 Msa0011910:CDS 30.0%
CACACCTTAATAAAAACTAG+TGG - chr1_1:17913397-17913416 Msa0011910:CDS 30.0%
!!! ACACCCACTAGTTTTTATTA+AGG + chr1_1:17913404-17913423 None:intergenic 30.0%
TCTTTATTCAGTGTCTATTG+GGG + chr1_1:17913513-17913532 None:intergenic 30.0%
CTTCTTTATTCAGTGTCTAT+TGG + chr1_1:17913515-17913534 None:intergenic 30.0%
!! GAGAATGGATTAGCATATAT+TGG + chr1_1:17913821-17913840 None:intergenic 30.0%
! ACTTATGGTAATGAATGTTG+TGG - chr1_1:17913944-17913963 Msa0011910:CDS 30.0%
! TACTCTTTTGCAAACACAAA+TGG + chr1_1:17914004-17914023 None:intergenic 30.0%
TTGAATTGCAGGGTTATATT+TGG - chr1_1:17914159-17914178 Msa0011910:CDS 30.0%
ATGTAGTAGAGTAGAGTAAT+TGG + chr1_1:17914201-17914220 None:intergenic 30.0%
!! ATAGGTGTTTTTACAAACCA+AGG + chr1_1:17914227-17914246 None:intergenic 30.0%
CTATCTTCCAAAGTATGAAT+AGG + chr1_1:17914245-17914264 None:intergenic 30.0%
! GAAGTATTCTATTCTTCACA+AGG - chr1_1:17914289-17914308 Msa0011910:CDS 30.0%
GGTGAAATAACTAGTTAGTA+GGG + chr1_1:17914349-17914368 None:intergenic 30.0%
TGGTGAAATAACTAGTTAGT+AGG + chr1_1:17914350-17914369 None:intergenic 30.0%
TATGGAGACATTAGCATTAT+GGG + chr1_1:17914448-17914467 None:intergenic 30.0%
ATATGGAGACATTAGCATTA+TGG + chr1_1:17914449-17914468 None:intergenic 30.0%
CCTTGAAAATTACATCATCT+TGG + chr1_1:17914480-17914499 None:intergenic 30.0%
! CCAAGATGATGTAATTTTCA+AGG - chr1_1:17914477-17914496 Msa0011910:five_prime_UTR 30.0%
AGACATAAAAGAGGAAAACA+TGG - chr1_1:17914532-17914551 Msa0011910:five_prime_UTR 30.0%
GACATAAAAGAGGAAAACAT+GGG - chr1_1:17914533-17914552 Msa0011910:five_prime_UTR 30.0%
TTGAGGAAGTAATTATGTAG+AGG - chr1_1:17914640-17914659 Msa0011910:five_prime_UTR 30.0%
!! AGGAGTACTTGTAATAGTAC+TGG + chr1_1:17909217-17909236 None:intergenic 35.0%
!! AATTTTGGTGACTACTCTGT+AGG + chr1_1:17909237-17909256 None:intergenic 35.0%
! AGTTAACTAGGAGTATAGGA+AGG + chr1_1:17909286-17909305 None:intergenic 35.0%
! GGTTGGTTAGTTAGTTAACT+AGG + chr1_1:17909298-17909317 None:intergenic 35.0%
AAAATGGGAAAGAAAACGGT+TGG + chr1_1:17909315-17909334 None:intergenic 35.0%
TTTATACCGGAACATTGATC+CGG + chr1_1:17909537-17909556 None:intergenic 35.0%
TTGAGATGAAGTGGAATGAA+AGG + chr1_1:17909590-17909609 None:intergenic 35.0%
TGCTAGTAGCACTTTCATTA+TGG - chr1_1:17909673-17909692 Msa0011910:CDS 35.0%
ATCAACACTTCCTAACACTT+TGG - chr1_1:17909749-17909768 Msa0011910:intron 35.0%
ACTTCCTAACACTTTGGTTA+TGG - chr1_1:17909755-17909774 Msa0011910:intron 35.0%
CTTCCTAACACTTTGGTTAT+GGG - chr1_1:17909756-17909775 Msa0011910:intron 35.0%
! ATTCCCATAACCAAAGTGTT+AGG + chr1_1:17909762-17909781 None:intergenic 35.0%
GCTATGTATGGTGATTATTC+AGG - chr1_1:17909795-17909814 Msa0011910:intron 35.0%
!! TAGCTTAATGGTTCAAGTTG+TGG - chr1_1:17909818-17909837 Msa0011910:CDS 35.0%
TGGTTCTTCAGTGTATCATT+TGG - chr1_1:17909838-17909857 Msa0011910:CDS 35.0%
!!! CTTTTTCTTTTTGAGTACCG+TGG - chr1_1:17909873-17909892 Msa0011910:CDS 35.0%
TGATTAAAAGCTTAGCACCA+CGG + chr1_1:17909893-17909912 None:intergenic 35.0%
!! TGGTGCTAAGCTTTTAATCA+TGG - chr1_1:17909893-17909912 Msa0011910:intron 35.0%
ATCGACCTTAAAGGAAACAA+TGG + chr1_1:17909943-17909962 None:intergenic 35.0%
!! TGTTTCCTTTAAGGTCGATT+CGG - chr1_1:17909944-17909963 Msa0011910:intron 35.0%
GGAAGTTACATGTTACTGTT+AGG - chr1_1:17910027-17910046 Msa0011910:intron 35.0%
! CAACCAAGACATTCCAATTT+TGG - chr1_1:17910191-17910210 Msa0011910:intron 35.0%
! ACCAAGACATTCCAATTTTG+GGG - chr1_1:17910193-17910212 Msa0011910:intron 35.0%
CAAATCATTAGCCCCAAAAT+TGG + chr1_1:17910207-17910226 None:intergenic 35.0%
AAATTTGAAGGTCTAGGAGT+TGG + chr1_1:17910257-17910276 None:intergenic 35.0%
TCTTCGAAATTTGAAGGTCT+AGG + chr1_1:17910263-17910282 None:intergenic 35.0%
TTAGTAGTAGAGGAGAATTC+CGG + chr1_1:17910362-17910381 None:intergenic 35.0%
AAGAGTTGCATATGTTTGTG+TGG - chr1_1:17910459-17910478 Msa0011910:intron 35.0%
AATTGAAGGTGGTCAAGAAA+AGG - chr1_1:17911023-17911042 Msa0011910:intron 35.0%
GTCAAGAAAAGGAAATTGGT+GGG - chr1_1:17911034-17911053 Msa0011910:intron 35.0%
TCAAGAAAAGGAAATTGGTG+GGG - chr1_1:17911035-17911054 Msa0011910:intron 35.0%
! AAGAGGACTTCAAGTTCAAT+GGG - chr1_1:17911058-17911077 Msa0011910:intron 35.0%
GTCTCATACTCATTATGGTT+TGG - chr1_1:17911223-17911242 Msa0011910:CDS 35.0%
! TCATACTCATTATGGTTTGG+AGG - chr1_1:17911226-17911245 Msa0011910:CDS 35.0%
ATGAGACTCGAATAAGTGTT+TGG + chr1_1:17911267-17911286 None:intergenic 35.0%
AACACTTATTCGAGTCTCAT+TGG - chr1_1:17911267-17911286 Msa0011910:intron 35.0%
!!! TTGTTGGTTTTCTTACATGC+AGG - chr1_1:17911482-17911501 Msa0011910:intron 35.0%
! CTATGTTTAGCTTAGGTAAG+TGG - chr1_1:17911575-17911594 Msa0011910:intron 35.0%
! TTGAATTTGAGAGTATGGGT+AGG - chr1_1:17911759-17911778 Msa0011910:intron 35.0%
! TGAGAAAAGTATGGATTTGG+GGG - chr1_1:17911790-17911809 Msa0011910:intron 35.0%
CTCATAGCCATCCATTATAT+TGG - chr1_1:17911829-17911848 Msa0011910:intron 35.0%
TAAAATTGGGTCCCATATGT+CGG + chr1_1:17911926-17911945 None:intergenic 35.0%
AGTAAGGAATCTTATAGCCA+TGG + chr1_1:17912666-17912685 None:intergenic 35.0%
ATGGCTATAAGATTCCTTAC+TGG - chr1_1:17912665-17912684 Msa0011910:CDS 35.0%
AACAATAGCTACATGTAGGA+GGG + chr1_1:17912738-17912757 None:intergenic 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG - chr1_1:17912855-17912874 Msa0011910:intron 35.0%
ACTCCCACATAAAAACTAGT+GGG + chr1_1:17913092-17913111 None:intergenic 35.0%
! TTTTAGCAAAGCTACACCTT+AGG - chr1_1:17912882-17912901 Msa0011910:intron 35.0%
TTTAGCAAAGCTACACCTTA+GGG - chr1_1:17912883-17912902 Msa0011910:intron 35.0%
AAGTGGTTAAATACACCCTA+AGG + chr1_1:17912901-17912920 None:intergenic 35.0%
!!! ACACCCACTTACTTTTTAGA+AGG + chr1_1:17912950-17912969 None:intergenic 35.0%
TGTTCTAGCAAATCCTATAG+GGG + chr1_1:17912984-17913003 None:intergenic 35.0%
GTGTTCTAGCAAATCCTATA+GGG + chr1_1:17912985-17913004 None:intergenic 35.0%
TGTGTTCTAGCAAATCCTAT+AGG + chr1_1:17912986-17913005 None:intergenic 35.0%
!!! ACCCACTTGTTTTTGTTAGA+AGG - chr1_1:17913005-17913024 Msa0011910:intron 35.0%
CACCTTCTAACAAAAACAAG+TGG + chr1_1:17913010-17913029 None:intergenic 35.0%
ACTCCCACATAAAAACTAGT+GGG - chr1_1:17913092-17913111 Msa0011910:intron 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG + chr1_1:17912855-17912874 None:intergenic 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG - chr1_1:17912855-17912874 Msa0011910:intron 35.0%
ACTCCCACATAAAAACTAGT+GGG + chr1_1:17913092-17913111 None:intergenic 35.0%
! TTTTAGCAAGCTACACCTTA+AGG - chr1_1:17913190-17913209 Msa0011910:intron 35.0%
GTATTCTAGCAAATGCCTAT+AGG - chr1_1:17913274-17913293 Msa0011910:CDS 35.0%
TGTATGTTAGCAACTCCTAT+AGG + chr1_1:17913292-17913311 None:intergenic 35.0%
AGACACTGAATAAAGAAGAG+TGG - chr1_1:17913517-17913536 Msa0011910:CDS 35.0%
CACATCAAGTACGAAAAAAG+AGG - chr1_1:17913585-17913604 Msa0011910:CDS 35.0%
TGAATGTTGTGGTTGACAAT+AGG - chr1_1:17913955-17913974 Msa0011910:CDS 35.0%
GTAGAGTAGAGTAATTGGAA+GGG + chr1_1:17914196-17914215 None:intergenic 35.0%
AGTAGAGTAGAGTAATTGGA+AGG + chr1_1:17914197-17914216 None:intergenic 35.0%
TGGAAGATAGTAAACATGCA+TGG - chr1_1:17914255-17914274 Msa0011910:CDS 35.0%
CTTGGAATGACAATTTCTGT+TGG + chr1_1:17914370-17914389 None:intergenic 35.0%
! AGAGAGCATGTAACATTGTA+AGG - chr1_1:17914508-17914527 Msa0011910:five_prime_UTR 35.0%
! GAGAGCATGTAACATTGTAA+GGG - chr1_1:17914509-17914528 Msa0011910:five_prime_UTR 35.0%
TTGTAAGGGAGACATAAAAG+AGG - chr1_1:17914523-17914542 Msa0011910:five_prime_UTR 35.0%
AAAAGAGGAAAACATGGGAA+TGG - chr1_1:17914538-17914557 Msa0011910:five_prime_UTR 35.0%
AAGGTGTGTCAGAGAAAGTA+GGG + chr1_1:17909155-17909174 None:intergenic 40.0%
GGTTTGTGAGACTAAGATGA+GGG + chr1_1:17909196-17909215 None:intergenic 40.0%
! TGGTTTGTGAGACTAAGATG+AGG + chr1_1:17909197-17909216 None:intergenic 40.0%
GTTGAATGGCATGTGAAGAA+AGG + chr1_1:17909373-17909392 None:intergenic 40.0%
TTACACTGTCTTAACAGCAG+TGG - chr1_1:17909449-17909468 Msa0011910:three_prime_UTR 40.0%
GTTGCTATGATCTTAGCCTA+CGG - chr1_1:17909483-17909502 Msa0011910:three_prime_UTR 40.0%
TATGATCTTAGCCTACGGTT+CGG - chr1_1:17909488-17909507 Msa0011910:three_prime_UTR 40.0%
GTGAGAAAATCTTCCACCAA+CGG + chr1_1:17909515-17909534 None:intergenic 40.0%
! TTGGTGGAAGATTTTCTCAC+CGG - chr1_1:17909515-17909534 Msa0011910:three_prime_UTR 40.0%
ATGAAGTGGAATGAAAGGAG+AGG + chr1_1:17909585-17909604 None:intergenic 40.0%
! GATTGTTGGTTGAGATGAAG+TGG + chr1_1:17909599-17909618 None:intergenic 40.0%
GGCTTCCATTGTTTCCTTTA+AGG - chr1_1:17909935-17909954 Msa0011910:intron 40.0%
AACATCCGAATCGACCTTAA+AGG + chr1_1:17909952-17909971 None:intergenic 40.0%
TCGGATGTTATGTCGTTAGA+TGG - chr1_1:17909963-17909982 Msa0011910:intron 40.0%
CTTGAAACTGATGCATCAGT+TGG - chr1_1:17909996-17910015 Msa0011910:intron 40.0%
!! ATGCATCAGTTGGTGATGAT+GGG - chr1_1:17910006-17910025 Msa0011910:intron 40.0%
TCAGCTCCAGTCAAATTTGA+CGG + chr1_1:17910098-17910117 None:intergenic 40.0%
GTTGAAATTAGACCCTCTTG+GGG + chr1_1:17910141-17910160 None:intergenic 40.0%
GGTTGAAATTAGACCCTCTT+GGG + chr1_1:17910142-17910161 None:intergenic 40.0%
TGGTTGAAATTAGACCCTCT+TGG + chr1_1:17910143-17910162 None:intergenic 40.0%
AGGGTCTAATTTCAACCATC+AGG - chr1_1:17910145-17910164 Msa0011910:intron 40.0%
TCATGGAGTAAAACTCCTGA+TGG + chr1_1:17910163-17910182 None:intergenic 40.0%
! TCAGGAGTTTTACTCCATGA+TGG - chr1_1:17910163-17910182 Msa0011910:intron 40.0%
! CAGGAGTTTTACTCCATGAT+GGG - chr1_1:17910164-17910183 Msa0011910:intron 40.0%
!! TCTTGGTTGATAACCCATCA+TGG + chr1_1:17910180-17910199 None:intergenic 40.0%
!! TCCTAGATTCGGGTTTTATC+CGG - chr1_1:17910298-17910317 Msa0011910:intron 40.0%
AACTGTGCCTAATTCGTATC+CGG - chr1_1:17910328-17910347 Msa0011910:intron 40.0%
TAGTAGTAGAGGAGAATTCC+GGG + chr1_1:17910361-17910380 None:intergenic 40.0%
CTTCACAGGTTTAGTAGTAG+AGG + chr1_1:17910372-17910391 None:intergenic 40.0%
TTTGTCTGCAATTGAACCTG+CGG + chr1_1:17910425-17910444 None:intergenic 40.0%
CAGGTTCAATTGCAGACAAA+AGG - chr1_1:17910425-17910444 Msa0011910:intron 40.0%
ATTGCAGACAAAAGGTTCTC+AGG - chr1_1:17910433-17910452 Msa0011910:intron 40.0%
CCTCAATGTCTTCCGAAATT+CGG - chr1_1:17910517-17910536 Msa0011910:intron 40.0%
CTTCGGATTGTTCCGAATTT+CGG + chr1_1:17910532-17910551 None:intergenic 40.0%
AAATTCGGAACAATCCGAAG+AGG - chr1_1:17910532-17910551 Msa0011910:intron 40.0%
AATTCGGAACAATCCGAAGA+GGG - chr1_1:17910533-17910552 Msa0011910:intron 40.0%
CAACGGAGATGTAGTTAAAG+AGG + chr1_1:17910722-17910741 None:intergenic 40.0%
CGGAGAGATATAGTACTCTT+AGG - chr1_1:17910759-17910778 Msa0011910:intron 40.0%
ATTCAAGCCTCTTGATCCAT+TGG - chr1_1:17910823-17910842 Msa0011910:intron 40.0%
CTTAGAACCAATGGATCAAG+AGG + chr1_1:17910833-17910852 None:intergenic 40.0%
CATGTCCTTCGGAATATACT+AGG + chr1_1:17910862-17910881 None:intergenic 40.0%
TTGTTGGAGTTCATGTCCTT+CGG + chr1_1:17910873-17910892 None:intergenic 40.0%
GGTGGTCAAGAAAAGGAAAT+TGG - chr1_1:17911030-17911049 Msa0011910:intron 40.0%
GGTCAAGAAAAGGAAATTGG+TGG - chr1_1:17911033-17911052 Msa0011910:intron 40.0%
! GAAGAGGACTTCAAGTTCAA+TGG - chr1_1:17911057-17911076 Msa0011910:intron 40.0%
! AGAGGACTTCAAGTTCAATG+GGG - chr1_1:17911059-17911078 Msa0011910:intron 40.0%
GACACGTCTCATACTCATTA+TGG - chr1_1:17911218-17911237 Msa0011910:CDS 40.0%
!! CGAGTCTCATTGGTCTTATT+TGG - chr1_1:17911277-17911296 Msa0011910:intron 40.0%
TACCTACCTAAAGGCAACAA+GGG + chr1_1:17911304-17911323 None:intergenic 40.0%
ATACCTACCTAAAGGCAACA+AGG + chr1_1:17911305-17911324 None:intergenic 40.0%
!! TTGGTTTTCTTACATGCAGG+TGG - chr1_1:17911485-17911504 Msa0011910:intron 40.0%
! TGGTTTTCTTACATGCAGGT+GGG - chr1_1:17911486-17911505 Msa0011910:intron 40.0%
ATTTCCATACTGTCTGATGC+TGG - chr1_1:17911541-17911560 Msa0011910:intron 40.0%
! GGAATGGCTATGTTTAGCTT+AGG - chr1_1:17911568-17911587 Msa0011910:intron 40.0%
AAAATTGGGTCCCATATGTC+GGG + chr1_1:17911925-17911944 None:intergenic 40.0%
ACCTTCTTCTTCAGACACAA+TGG - chr1_1:17911955-17911974 Msa0011910:intron 40.0%
TCCATTGTGTCTGAAGAAGA+AGG + chr1_1:17911959-17911978 None:intergenic 40.0%
TTCTTCAGACACAATGGACA+AGG - chr1_1:17911961-17911980 Msa0011910:intron 40.0%
TCTTCAGACACAATGGACAA+GGG - chr1_1:17911962-17911981 Msa0011910:intron 40.0%
GCTACCCTAATTAACCATAG+TGG - chr1_1:17911996-17912015 Msa0011910:intron 40.0%
AACCCAAGATCATTGCATGT+GGG - chr1_1:17912621-17912640 Msa0011910:CDS 40.0%
TTCCCACATGCAATGATCTT+GGG + chr1_1:17912626-17912645 None:intergenic 40.0%
ATTCCCACATGCAATGATCT+TGG + chr1_1:17912627-17912646 None:intergenic 40.0%
! TTCTGTTGCTTCATTTGCCA+TGG - chr1_1:17912646-17912665 Msa0011910:CDS 40.0%
GAACAATAGCTACATGTAGG+AGG + chr1_1:17912739-17912758 None:intergenic 40.0%
CCTGAACAATAGCTACATGT+AGG + chr1_1:17912742-17912761 None:intergenic 40.0%
CCTACATGTAGCTATTGTTC+AGG - chr1_1:17912739-17912758 Msa0011910:CDS 40.0%
!!! CACACCCACTAGTTTTTATG+TGG - chr1_1:17912854-17912873 Msa0011910:intron 40.0%
CACTCCCACATAAAAACTAG+TGG + chr1_1:17913091-17913110 None:intergenic 40.0%
! AAATCCTATAGGGGTTTGCT+AGG + chr1_1:17912975-17912994 None:intergenic 40.0%
CACTCCCACATAAAAACTAG+TGG - chr1_1:17913091-17913110 Msa0011910:intron 40.0%
!!! CACACCCACTAGTTTTTATG+TGG + chr1_1:17912854-17912873 None:intergenic 40.0%
!!! CACACCCACTAGTTTTTATG+TGG - chr1_1:17912854-17912873 Msa0011910:intron 40.0%
CACTCCCACATAAAAACTAG+TGG + chr1_1:17913091-17913110 None:intergenic 40.0%
!! GTACGAAAAAAGAGGTACTG+CGG - chr1_1:17913593-17913612 Msa0011910:CDS 40.0%
TCCATTCTCTCTTGCTTCTT+TGG - chr1_1:17913832-17913851 Msa0011910:CDS 40.0%
TCCAAAGAAGCAAGAGAGAA+TGG + chr1_1:17913836-17913855 None:intergenic 40.0%
ACAAATGGAACAATCCCTTG+TGG + chr1_1:17913989-17914008 None:intergenic 40.0%
TGCTTACGCTGTACTAAGAA+TGG + chr1_1:17914041-17914060 None:intergenic 40.0%
CTACTCTACTACATTCTCCT+TGG - chr1_1:17914207-17914226 Msa0011910:CDS 40.0%
ATGTTACATGCTCTCTCTTG+AGG + chr1_1:17914504-17914523 None:intergenic 40.0%
AGGTGTGTCAGAGAAAGTAG+GGG + chr1_1:17909154-17909173 None:intergenic 45.0%
! GAAGGTGTGTCAGAGAAAGT+AGG + chr1_1:17909156-17909175 None:intergenic 45.0%
TTCTCACCGGATCAATGTTC+CGG - chr1_1:17909528-17909547 Msa0011910:three_prime_UTR 45.0%
GTGGAATGAAAGGAGAGGTA+CGG + chr1_1:17909580-17909599 None:intergenic 45.0%
AAAGGAAACAATGGAAGCCG+CGG + chr1_1:17909934-17909953 None:intergenic 45.0%
!! GATGCATCAGTTGGTGATGA+TGG - chr1_1:17910005-17910024 Msa0011910:intron 45.0%
GCCCCAAAATTGGAATGTCT+TGG + chr1_1:17910197-17910216 None:intergenic 45.0%
TCTGTCCAGTCTTCTTCTAG+AGG - chr1_1:17910230-17910249 Msa0011910:intron 45.0%
! TTGGTCCTCTAGAAGAAGAC+TGG + chr1_1:17910238-17910257 None:intergenic 45.0%
GGTGCAAGTTCTCCTAGATT+CGG - chr1_1:17910287-17910306 Msa0011910:intron 45.0%
GTGCAAGTTCTCCTAGATTC+GGG - chr1_1:17910288-17910307 Msa0011910:intron 45.0%
! TTTGGCACCGGATACGAATT+AGG + chr1_1:17910338-17910357 None:intergenic 45.0%
AATTGAACCTGCGGTTGTTG+CGG + chr1_1:17910416-17910435 None:intergenic 45.0%
CCGAATTTCGGAAGACATTG+AGG + chr1_1:17910520-17910539 None:intergenic 45.0%
AAAGGAAATTGGTGGGGAAG+AGG - chr1_1:17911041-17911060 Msa0011910:intron 45.0%
! CTTCAAGTTCAATGGGGTGA+AGG - chr1_1:17911065-17911084 Msa0011910:intron 45.0%
AAGTTCAATGGGGTGAAGGT+AGG - chr1_1:17911069-17911088 Msa0011910:intron 45.0%
AAGGTAGGAGAACAAGGAGA+AGG - chr1_1:17911084-17911103 Msa0011910:intron 45.0%
ACCCAATGGACCTAACAAGT+TGG - chr1_1:17911107-17911126 Msa0011910:intron 45.0%
!! CCCAACTTGTTAGGTCCATT+GGG + chr1_1:17911111-17911130 None:intergenic 45.0%
CCCAATGGACCTAACAAGTT+GGG - chr1_1:17911108-17911127 Msa0011910:intron 45.0%
! GAATTCGAGCCCAACTTGTT+AGG + chr1_1:17911120-17911139 None:intergenic 45.0%
TTTGGTCCCTTGTTGCCTTT+AGG - chr1_1:17911295-17911314 Msa0011910:intron 45.0%
AAGACCAGCATCAGACAGTA+TGG + chr1_1:17911548-17911567 None:intergenic 45.0%
! ATACTGTCTGATGCTGGTCT+TGG - chr1_1:17911547-17911566 Msa0011910:intron 45.0%
AGCATAATGTCCCCGACATA+TGG - chr1_1:17911911-17911930 Msa0011910:intron 45.0%
GCATAATGTCCCCGACATAT+GGG - chr1_1:17911912-17911931 Msa0011910:intron 45.0%
AAATTGGGTCCCATATGTCG+GGG + chr1_1:17911924-17911943 None:intergenic 45.0%
AAGACACACATGGTGAGACA+GGG + chr1_1:17912107-17912126 None:intergenic 45.0%
AAAGACACACATGGTGAGAC+AGG + chr1_1:17912108-17912127 None:intergenic 45.0%
CAACCCAAGATCATTGCATG+TGG - chr1_1:17912620-17912639 Msa0011910:CDS 45.0%
GTATCCTAGCAAACCCCTAT+AGG - chr1_1:17912968-17912987 Msa0011910:intron 45.0%
AATAGGCTGCACTTCCACAA+GGG - chr1_1:17913972-17913991 Msa0011910:CDS 45.0%
CTGTACTAAGAATGGCTGGA+TGG + chr1_1:17914033-17914052 None:intergenic 45.0%
TACGCTGTACTAAGAATGGC+TGG + chr1_1:17914037-17914056 None:intergenic 45.0%
!! ATATTAATAATGATTATTTA+AGG - chr1_1:17910945-17910964 Msa0011910:intron 5.0%
!!! TTATGTTTTTTTTTAAATAT+CGG - chr1_1:17912163-17912182 Msa0011910:intron 5.0%
GGTGTGTCAGAGAAAGTAGG+GGG + chr1_1:17909153-17909172 None:intergenic 50.0%
TTAGGAAGTCTAACGCGTCG+CGG - chr1_1:17910045-17910064 Msa0011910:intron 50.0%
CCAGTCAAATTTGACGGTCG+CGG + chr1_1:17910092-17910111 None:intergenic 50.0%
GAAATTAGACCCTCTTGGGG+TGG + chr1_1:17910138-17910157 None:intergenic 50.0%
GCCGGATAAAACCCGAATCT+AGG + chr1_1:17910302-17910321 None:intergenic 50.0%
GTAGAGGAGAATTCCGGGTT+TGG + chr1_1:17910356-17910375 None:intergenic 50.0%
!! CTCAAGTGCTTCACCGGTTT+CGG - chr1_1:17910484-17910503 Msa0011910:intron 50.0%
!! ACAATCCGAAGAGGGTGCTA+AGG - chr1_1:17910541-17910560 Msa0011910:intron 50.0%
GATCTCCTTAGCACCCTCTT+CGG + chr1_1:17910549-17910568 None:intergenic 50.0%
!! AAGAGGGTGCTAAGGAGATC+AGG - chr1_1:17910549-17910568 Msa0011910:intron 50.0%
TGCTAAGGAGATCAGGATGG+TGG - chr1_1:17910556-17910575 Msa0011910:intron 50.0%
! TAAGGAGATCAGGATGGTGG+TGG - chr1_1:17910559-17910578 Msa0011910:intron 50.0%
GAACAAGGAGAAGGACCCAA+TGG - chr1_1:17911093-17911112 Msa0011910:intron 50.0%
!! GCCCAACTTGTTAGGTCCAT+TGG + chr1_1:17911112-17911131 None:intergenic 50.0%
TGTCGGAAAACTCATGCCTC+CGG - chr1_1:17911185-17911204 Msa0011910:CDS 50.0%
GTCCCTTGTTGCCTTTAGGT+AGG - chr1_1:17911299-17911318 Msa0011910:intron 50.0%
!! GTCTGATGCTGGTCTTGGAA+TGG - chr1_1:17911552-17911571 Msa0011910:intron 50.0%
TCAGACACAATGGACAAGGG+TGG - chr1_1:17911965-17911984 Msa0011910:intron 50.0%
CCATAACTGCTGGACCAGTA+AGG + chr1_1:17912682-17912701 None:intergenic 50.0%
CCTTACTGGTCCAGCAGTTA+TGG - chr1_1:17912679-17912698 Msa0011910:CDS 50.0%
CAATAGGCTGCACTTCCACA+AGG - chr1_1:17913971-17913990 Msa0011910:CDS 50.0%
CGCGACGAAGCGGTTTATAC+CGG + chr1_1:17909550-17909569 None:intergenic 55.0%
CGGTATAAACCGCTTCGTCG+CGG - chr1_1:17909548-17909567 Msa0011910:three_prime_UTR 55.0%
GGAGCAGTTTCCAGAAACCG+CGG - chr1_1:17909914-17909933 Msa0011910:intron 55.0%
ACAATGGAAGCCGCGGTTTC+TGG + chr1_1:17909927-17909946 None:intergenic 55.0%
CCGCGACCGTCAAATTTGAC+TGG - chr1_1:17910089-17910108 Msa0011910:intron 55.0%
TTAGGCACAGTTTGCGCTGC+CGG + chr1_1:17910320-17910339 None:intergenic 55.0%
! TTCGTATCCGGTGCCAAACC+CGG - chr1_1:17910340-17910359 Msa0011910:intron 55.0%
GAGAATTCCGGGTTTGGCAC+CGG + chr1_1:17910350-17910369 None:intergenic 55.0%
TTTGATGCCGCAACAACCGC+AGG - chr1_1:17910406-17910425 Msa0011910:intron 55.0%
GTGGAGCTCAAGTGCTTCAC+CGG - chr1_1:17910478-17910497 Msa0011910:intron 55.0%
!! TCACCGGTTTCGGAAAGTGC+TGG - chr1_1:17910494-17910513 Msa0011910:intron 55.0%
AGGCCAGCACTTTCCGAAAC+CGG + chr1_1:17910500-17910519 None:intergenic 55.0%
GGGTGCTAAGGAGATCAGGA+TGG - chr1_1:17910553-17910572 Msa0011910:intron 55.0%
GGGGTGAAGGTAGGAGAACA+AGG - chr1_1:17911078-17911097 Msa0011910:intron 55.0%
GTTGGGCTCGAATTCAACGC+CGG - chr1_1:17911125-17911144 Msa0011910:CDS 55.0%
GACACTTGAATCCGCGACTC+CGG + chr1_1:17911169-17911188 None:intergenic 55.0%
GGAGTCGCGGATTCAAGTGT+CGG - chr1_1:17911168-17911187 Msa0011910:CDS 55.0%
GACACAATGGACAAGGGTGG+TGG - chr1_1:17911968-17911987 Msa0011910:intron 55.0%
GAAGCTGCTGCCATAACTGC+TGG + chr1_1:17912692-17912711 None:intergenic 55.0%
CTACATGTAGGAGGGTCCCA+CGG + chr1_1:17912730-17912749 None:intergenic 55.0%
!! TAGCCTACGGTTCGGTCCGT+TGG - chr1_1:17909496-17909515 Msa0011910:three_prime_UTR 60.0%
AGTCTCAGCTCCACCCCAAG+AGG - chr1_1:17910125-17910144 Msa0011910:intron 60.0%
GTCTCAGCTCCACCCCAAGA+GGG - chr1_1:17910126-17910145 Msa0011910:intron 60.0%
!! GTGGCTTTAGGGTGGAGCTC+CGG + chr1_1:17911147-17911166 None:intergenic 60.0%
GAGCTCCACCCTAAAGCCAC+CGG - chr1_1:17911147-17911166 Msa0011910:CDS 60.0%
ACTTGAATCCGCGACTCCGG+TGG + chr1_1:17911166-17911185 None:intergenic 60.0%
AGACGTGTCATGACGCTCGC+CGG + chr1_1:17911207-17911226 None:intergenic 60.0%
GCAGCAGCTTCTATCGCCGT+TGG - chr1_1:17912701-17912720 Msa0011910:CDS 60.0%
CCACCAACGGACCGAACCGT+AGG + chr1_1:17909502-17909521 None:intergenic 65.0%
!! CCTACGGTTCGGTCCGTTGG+TGG - chr1_1:17909499-17909518 Msa0011910:three_prime_UTR 65.0%
CGGCGAAAACCGCGACGAAG+CGG + chr1_1:17909560-17909579 None:intergenic 65.0%
GGAAGTCTAACGCGTCGCGG+AGG - chr1_1:17910048-17910067 Msa0011910:intron 65.0%
!! CGACTCCGGTGGCTTTAGGG+TGG + chr1_1:17911155-17911174 None:intergenic 65.0%
! CCGCGACTCCGGTGGCTTTA+GGG + chr1_1:17911158-17911177 None:intergenic 65.0%
CCCTAAAGCCACCGGAGTCG+CGG - chr1_1:17911155-17911174 Msa0011910:CDS 65.0%
TCCGCGACTCCGGTGGCTTT+AGG + chr1_1:17911159-17911178 None:intergenic 65.0%
! TCTATCGCCGTTGGCCTCCG+TGG - chr1_1:17912710-17912729 Msa0011910:CDS 65.0%
! CTATCGCCGTTGGCCTCCGT+GGG - chr1_1:17912711-17912730 Msa0011910:CDS 65.0%
CATGTAGGAGGGTCCCACGG+AGG + chr1_1:17912727-17912746 None:intergenic 65.0%
CGTGTCATGACGCTCGCCGG+AGG + chr1_1:17911204-17911223 None:intergenic 70.0%
GAGGGTCCCACGGAGGCCAA+CGG + chr1_1:17912720-17912739 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 17909094 17914775 17909094 ID=Msa0011910;Name=Msa0011910
chr1_1 mRNA 17909094 17914775 17909094 ID=Msa0011910-mRNA-1;Parent=Msa0011910;Name=Msa0011910-mRNA-1;_AED=0.01;_eAED=0.01;_QI=335|1|1|1|1|1|6|539|621
chr1_1 exon 17909094 17909699 17909094 ID=Msa0011910-mRNA-1:exon:6532;Parent=Msa0011910-mRNA-1
chr1_1 exon 17909816 17909892 17909816 ID=Msa0011910-mRNA-1:exon:6531;Parent=Msa0011910-mRNA-1
chr1_1 exon 17911109 17911266 17911109 ID=Msa0011910-mRNA-1:exon:6530;Parent=Msa0011910-mRNA-1
chr1_1 exon 17912280 17912365 17912280 ID=Msa0011910-mRNA-1:exon:6529;Parent=Msa0011910-mRNA-1
chr1_1 exon 17912553 17912838 17912553 ID=Msa0011910-mRNA-1:exon:6528;Parent=Msa0011910-mRNA-1
chr1_1 exon 17913249 17914775 17913249 ID=Msa0011910-mRNA-1:exon:6527;Parent=Msa0011910-mRNA-1
chr1_1 five_prime_UTR 17914441 17914775 17914441 ID=Msa0011910-mRNA-1:five_prime_utr;Parent=Msa0011910-mRNA-1
chr1_1 CDS 17913249 17914440 17913249 ID=Msa0011910-mRNA-1:cds;Parent=Msa0011910-mRNA-1
chr1_1 CDS 17912553 17912838 17912553 ID=Msa0011910-mRNA-1:cds;Parent=Msa0011910-mRNA-1
chr1_1 CDS 17912280 17912365 17912280 ID=Msa0011910-mRNA-1:cds;Parent=Msa0011910-mRNA-1
chr1_1 CDS 17911109 17911266 17911109 ID=Msa0011910-mRNA-1:cds;Parent=Msa0011910-mRNA-1
chr1_1 CDS 17909816 17909892 17909816 ID=Msa0011910-mRNA-1:cds;Parent=Msa0011910-mRNA-1
chr1_1 CDS 17909633 17909699 17909633 ID=Msa0011910-mRNA-1:cds;Parent=Msa0011910-mRNA-1
chr1_1 three_prime_UTR 17909094 17909632 17909094 ID=Msa0011910-mRNA-1:three_prime_utr;Parent=Msa0011910-mRNA-1
Gene Sequence

>Msa0011910

ATGATAACACTTAAAGATCTTTACACTGTCTTAACAGCAGTGGTTCCATTATATGTTGCTATGATCTTAGCCTACGGTTCGGTCCGTTGGTGGAAGATTTTCTCACCGGATCAATGTTCCGGTATAAACCGCTTCGTCGCGGTTTTCGCCGTACCTCTCCTTTCATTCCACTTCATCTCAACCAACAATCCATATCAAATGAACTTCAGATTCATAGCTGCAGACACACTTCAAAAAATCATCATGCTAGTAGCACTTTCATTATGGACATTGTTCACTAAAAATGGCAATTTAGAATGGATGATAACAATCTTTTCATTATCAACACTTCCTAACACTTTGGTTATGGGAATTCCTTTGTTAATTGCTATGTATGGTGATTATTCAGGTAGCTTAATGGTTCAAGTTGTGGTTCTTCAGTGTATCATTTGGTACACTCTTTTGCTTTTTCTTTTTGAGTACCGTGGTGCTAAGCTTTTAATCATGGAGCAGTTTCCAGAAACCGCGGCTTCCATTGTTTCCTTTAAGGTCGATTCGGATGTTATGTCGTTAGATGGAAGAGATTTTCTTGAAACTGATGCATCAGTTGGTGATGATGGGAAGTTACATGTTACTGTTAGGAAGTCTAACGCGTCGCGGAGGTCATTTATGATGAATACTCCGCGACCGTCAAATTTGACTGGAGCTGAGATTTATAGTCTCAGCTCCACCCCAAGAGGGTCTAATTTCAACCATCAGGAGTTTTACTCCATGATGGGTTATCAACCAAGACATTCCAATTTTGGGGCTAATGATTTGTATTCTGTCCAGTCTTCTTCTAGAGGACCAACTCCTAGACCTTCAAATTTCGAAGAAAATGGTGCAAGTTCTCCTAGATTCGGGTTTTATCCGGCAGCGCAAACTGTGCCTAATTCGTATCCGGTGCCAAACCCGGAATTCTCCTCTACTACTAAACCTGTGAAGAATCAGAATCAAAATTTGATGCCGCAACAACCGCAGGTTCAATTGCAGACAAAAGGTTCTCAGGATAAAGAGTTGCATATGTTTGTGTGGAGCTCAAGTGCTTCACCGGTTTCGGAAAGTGCTGGCCTCAATGTCTTCCGAAATTCGGAACAATCCGAAGAGGGTGCTAAGGAGATCAGGATGGTGGTGGCTGATGAACATAATCAAAATGGTGAAACCAATAACAAAGGTGGTCAAGAAAAGGAAATTGGTGGGGAAGAGGACTTCAAGTTCAATGGGGTGAAGGTAGGAGAACAAGGAGAAGGACCCAATGGACCTAACAAGTTGGGCTCGAATTCAACGCCGGAGCTCCACCCTAAAGCCACCGGAGTCGCGGATTCAAGTGTCGGAAAACTCATGCCTCCGGCGAGCGTCATGACACGTCTCATACTCATTATGGTTTGGAGGAAACTTATCCGTAATCCAAACACTTATTCGAGTCTCATTGGTCTTATTTGGTCCCTTGTTGCCTTTAGGTGGGATGTTCATATGCCTAAAATAATAGAGAAATCAATTTCCATACTGTCTGATGCTGGTCTTGGAATGGCTATGTTTAGCTTAGGTCTGTTTATGGCTCTTCAACCCAAGATCATTGCATGTGGGAATTCTGTTGCTTCATTTGCCATGGCTATAAGATTCCTTACTGGTCCAGCAGTTATGGCAGCAGCTTCTATCGCCGTTGGCCTCCGTGGGACCCTCCTACATGTAGCTATTGTTCAGGCTGCACTTCCACAAGGGATTGTTCCATTTGTGTTTGCAAAAGAGTACAATGTCCATCCAGCCATTCTTAGTACAGCGGTTATATTTGGTATGTTAATAGCCCTTCCAATTACTCTACTCTACTACATTCTCCTTGGTTTGTAA
Protein sequence

>Msa0011910

MITLKDLYTVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAVFAVPLLSFHFISTNNPYQMNFRFIAADTLQKIIMLVALSLWTLFTKNGNLEWMITIFSLSTLPNTLVMGIPLLIAMYGDYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKLLIMEQFPETAASIVSFKVDSDVMSLDGRDFLETDASVGDDGKLHVTVRKSNASRRSFMMNTPRPSNLTGAEIYSLSSTPRGSNFNHQEFYSMMGYQPRHSNFGANDLYSVQSSSRGPTPRPSNFEENGASSPRFGFYPAAQTVPNSYPVPNPEFSSTTKPVKNQNQNLMPQQPQVQLQTKGSQDKELHMFVWSSSASPVSESAGLNVFRNSEQSEEGAKEIRMVVADEHNQNGETNNKGGQEKEIGGEEDFKFNGVKVGEQGEGPNGPNKLGSNSTPELHPKATGVADSSVGKLMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLVAFRWDVHMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVASFAMAIRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLLYYILLGL*