AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0643330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0643330 MtrunA17_Chr4g0030011 64.135 237 25 4 1 195 1 219 5.37e-94 273
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0643330 AT5G59770.1 41.395 215 67 4 9 182 8 204 3.39e-43 144

Find 70 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAGAAATACCTTATATTT+AGG 0.112101 4_3:+46165095 Msa0643330:three_prime_UTR
TGGAATTAGCTTTGAGAATT+AGG 0.162526 4_3:+46165075 Msa0643330:three_prime_UTR
AGGAAATCATAATAACTAAA+TGG 0.223354 4_3:-46164303 None:intergenic
GAGAGCCATTGTTGTTATTA+TGG 0.226900 4_3:-46162154 None:intergenic
CTGCACAGATTTCTACCTTA+TGG 0.243764 4_3:-46164771 None:intergenic
ATATTCTTCTCCTTTATAAT+TGG 0.246163 4_3:-46164255 None:intergenic
TCTACTAACTTTGATTCATT+GGG 0.249834 4_3:-46162067 None:intergenic
TCTTCAATGTGCTGCATTCT+TGG 0.260285 4_3:+46162416 Msa0643330:CDS
GGAGAAATACCTTATATTTA+GGG 0.264068 4_3:+46165096 Msa0643330:three_prime_UTR
TTCTACTAACTTTGATTCAT+TGG 0.266010 4_3:-46162068 None:intergenic
AACAATCAAATGGTGCAAAT+TGG 0.273132 4_3:+46162034 None:intergenic
CGAAGTCATACATACTAAAA+TGG 0.275021 4_3:-46164972 None:intergenic
GCTTGGGAAATTGTCCTTCT+TGG 0.285396 4_3:+46163880 Msa0643330:CDS
TATCCTGTGGGAGTGTTTCC+TGG 0.286736 4_3:+46164059 Msa0643330:CDS
TCTAAAATATTTCCTTTGAT+TGG 0.298079 4_3:-46164886 None:intergenic
AACTCTTCAAATACAGGCTT+GGG 0.300741 4_3:-46164945 None:intergenic
AATAATATACTGACTAATTA+AGG 0.309678 4_3:-46162307 None:intergenic
GGAATGGATAAACTATAATT+AGG 0.324528 4_3:-46164583 None:intergenic
CTTTCTGTACCATTGTTACT+AGG 0.336549 4_3:+46164728 Msa0643330:three_prime_UTR
ATAACAATTGTACGAAATAA+TGG 0.346907 4_3:-46164863 None:intergenic
CCACTGCTACCCTAAATATA+AGG 0.350505 4_3:-46165105 None:intergenic
ACCTCATTTCTCCATCAGTA+TGG 0.378253 4_3:-46163947 None:intergenic
CTTCTTGGATGACCTATATC+AGG 0.387626 4_3:+46163895 Msa0643330:CDS
GCATTATGCTTTCAGTTGCT+TGG 0.401661 4_3:+46163863 Msa0643330:CDS
CATTATGCTTTCAGTTGCTT+GGG 0.402222 4_3:+46163864 Msa0643330:CDS
CCAGGCGCTTCCAATTATAA+AGG 0.426455 4_3:+46164245 Msa0643330:CDS
CTCTCCACTTCCTCCATCAC+TGG 0.426494 4_3:+46162264 Msa0643330:CDS
TAGTTATTATGATTTCCTTA+AGG 0.432805 4_3:+46164308 Msa0643330:CDS
GGAAATCATAATAACTAAAT+GGG 0.435335 4_3:-46164302 None:intergenic
GGAATAAACTCTTCAAATAC+AGG 0.446971 4_3:-46164951 None:intergenic
AAACTCTTCAAATACAGGCT+TGG 0.455897 4_3:-46164946 None:intergenic
TTATAGTTTATCCATTCCTC+TGG 0.461684 4_3:+46164588 Msa0643330:CDS
TTCTATATTCTCCATACTGA+TGG 0.480176 4_3:+46163936 Msa0643330:CDS
TACAATTGTTATCCAATCAA+AGG 0.497645 4_3:+46164874 Msa0643330:three_prime_UTR
CCTTTATAATTGGAAGCGCC+TGG 0.502979 4_3:-46164245 None:intergenic
AGTTCCAGTGATGGAGGAAG+TGG 0.507585 4_3:-46162268 None:intergenic
GTTTATTGTGATTTATCCTG+TGG 0.508886 4_3:+46164046 Msa0643330:CDS
AATCAAAGTTAGTAGAAGAG+AGG 0.511792 4_3:+46162074 Msa0643330:five_prime_UTR
CCTTATATTTAGGGTAGCAG+TGG 0.512899 4_3:+46165105 Msa0643330:three_prime_UTR
CGTGACAAGAAAAGAGCATA+AGG 0.514361 4_3:+46164665 Msa0643330:CDS
GAAGTTATACACGGTGCCAT+TGG 0.515549 4_3:+46162438 Msa0643330:CDS
ACTAAATGGGAGGCTTGAAA+AGG 0.523268 4_3:-46164289 None:intergenic
TGCAGTATGGTTGATGTACC+AGG 0.524168 4_3:+46164227 Msa0643330:intron
GCCGCTGCTTGAACAAATGC+AGG 0.533526 4_3:-46164622 None:intergenic
GAGTCCTATTAAAATCCATA+AGG 0.535651 4_3:+46164756 Msa0643330:three_prime_UTR
CTGATATAGGTCATCCAAGA+AGG 0.541355 4_3:-46163894 None:intergenic
CATATGAACTCACTTTCTCC+AGG 0.542825 4_3:-46164077 None:intergenic
ATACTGACTAATTAAGGTGC+CGG 0.551153 4_3:-46162301 None:intergenic
CTACTAACTTTGATTCATTG+GGG 0.563044 4_3:-46162066 None:intergenic
AAATCTGTGCAGAATAATGC+AGG 0.564159 4_3:+46164782 Msa0643330:three_prime_UTR
AGCATAAGTTCCAGTGATGG+AGG 0.564797 4_3:-46162274 None:intergenic
ACTGGAACTTATGCTTCTGC+CGG 0.569567 4_3:+46162282 Msa0643330:CDS
TTTATTGTGATTTATCCTGT+GGG 0.570256 4_3:+46164047 Msa0643330:CDS
ACTAACTTTGATTCATTGGG+GGG 0.572060 4_3:-46162064 None:intergenic
ACCTGCATTTGTTCAAGCAG+CGG 0.572458 4_3:+46164621 Msa0643330:CDS
GAAGAGAGGAGAGAATCCAT+TGG 0.582790 4_3:+46162088 Msa0643330:five_prime_UTR
TATAGTTTGAACCAGAGGAA+TGG 0.586252 4_3:-46164599 None:intergenic
CTTGAAAAGAGTTGTAAGCA+AGG 0.590281 4_3:-46162197 None:intergenic
TACTAACTTTGATTCATTGG+GGG 0.591664 4_3:-46162065 None:intergenic
CTAATCCATAATAACAACAA+TGG 0.598645 4_3:+46162149 Msa0643330:exon
ATACAGGCTTGGGGTGACAC+AGG 0.606804 4_3:-46164935 None:intergenic
TCTCCAGGAAACACTCCCAC+AGG 0.614332 4_3:-46164062 None:intergenic
GCAGGTATAGTTTGAACCAG+AGG 0.617176 4_3:-46164604 None:intergenic
TCCATACTGATGGAGAAATG+AGG 0.622962 4_3:+46163946 Msa0643330:CDS
AATCATAATAACTAAATGGG+AGG 0.632223 4_3:-46164299 None:intergenic
ACTCTTTGGCCTAGTAACAA+TGG 0.641111 4_3:-46164737 None:intergenic
AGAAGCATAAGTTCCAGTGA+TGG 0.646845 4_3:-46162277 None:intergenic
ACTCTTCAAATACAGGCTTG+GGG 0.648938 4_3:-46164944 None:intergenic
GCATTCTTGGAAGTTATACA+CGG 0.672092 4_3:+46162429 Msa0643330:CDS
AGGATAAATCACAATAAACG+CGG 0.753232 4_3:-46164042 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATATACTGACTAATTA+AGG - chr4_3:46162310-46162329 None:intergenic 15.0%
!!! ATATTTGTTTTTTTTAGAGT+TGG + chr4_3:46163190-46163209 Msa0643330:intron 15.0%
!!! TATTTGTTTTTTTTAGAGTT+GGG + chr4_3:46163191-46163210 Msa0643330:intron 15.0%
!!! TGATTTTCTCAAATTATTAA+CGG - chr4_3:46163636-46163655 None:intergenic 15.0%
!!! TTCTTTATCTTTTGATTATT+AGG + chr4_3:46164015-46164034 Msa0643330:intron 15.0%
!!! TTAATTCAGCAATATTTTGT+TGG + chr4_3:46162383-46162402 Msa0643330:intron 20.0%
!! TATGACTTATATTCAGAAAT+TGG + chr4_3:46162991-46163010 Msa0643330:intron 20.0%
!! AGCAAAAAAGAAAAAGAAAA+AGG - chr4_3:46163560-46163579 None:intergenic 20.0%
!!! TAACACAATTTTTATGGATT+TGG - chr4_3:46163773-46163792 None:intergenic 20.0%
!! ATATTCTTCTCCTTTATAAT+TGG - chr4_3:46164258-46164277 None:intergenic 20.0%
!! GGAAATCATAATAACTAAAT+GGG - chr4_3:46164305-46164324 None:intergenic 20.0%
!! AGGAAATCATAATAACTAAA+TGG - chr4_3:46164306-46164325 None:intergenic 20.0%
!! TAGTTATTATGATTTCCTTA+AGG + chr4_3:46164308-46164327 Msa0643330:CDS 20.0%
!! AAAACAACATTTATATCACA+GGG - chr4_3:46164436-46164455 None:intergenic 20.0%
!! TGTAATAATCTACAATTCAT+AGG - chr4_3:46164535-46164554 None:intergenic 20.0%
!!! TCAGTAATGATTAAGATTTT+AGG - chr4_3:46164832-46164851 None:intergenic 20.0%
!! ATAACAATTGTACGAAATAA+TGG - chr4_3:46164866-46164885 None:intergenic 20.0%
!!! TCTAAAATATTTCCTTTGAT+TGG - chr4_3:46164889-46164908 None:intergenic 20.0%
! TCTACTAACTTTGATTCATT+GGG - chr4_3:46162070-46162089 None:intergenic 25.0%
! TTCTACTAACTTTGATTCAT+TGG - chr4_3:46162071-46162090 None:intergenic 25.0%
! CTAATCCATAATAACAACAA+TGG + chr4_3:46162149-46162168 Msa0643330:exon 25.0%
! TGATTAATAATGTGTGAGTA+AGG - chr4_3:46162363-46162382 None:intergenic 25.0%
! TAAAGCATATAACAGTTAGA+AGG - chr4_3:46162493-46162512 None:intergenic 25.0%
! CAAATCATGAAATGAATTTC+AGG + chr4_3:46162538-46162557 Msa0643330:intron 25.0%
! ATTCAAAATTACTATCGCTA+TGG - chr4_3:46162738-46162757 None:intergenic 25.0%
! TTGAATCCAAAATACTTATC+TGG + chr4_3:46162752-46162771 Msa0643330:intron 25.0%
! ACTTATATTCAGAAATTGGT+GGG + chr4_3:46162995-46163014 Msa0643330:intron 25.0%
! AAATATAAAAAAACGCAGAC+AGG - chr4_3:46163176-46163195 None:intergenic 25.0%
!! CAATTTATGATAAGCATTGT+TGG + chr4_3:46163289-46163308 Msa0643330:intron 25.0%
!! TTATACCTAACTCATTTTCA+TGG + chr4_3:46163730-46163749 Msa0643330:intron 25.0%
!! CCTCTATAACACAATTTTTA+TGG - chr4_3:46163779-46163798 None:intergenic 25.0%
! CCATAAAAATTGTGTTATAG+AGG + chr4_3:46163776-46163795 Msa0643330:intron 25.0%
! TTTATTGTGATTTATCCTGT+GGG + chr4_3:46164047-46164066 Msa0643330:CDS 25.0%
! AACAAAACTTAACGATAAGA+GGG - chr4_3:46164112-46164131 None:intergenic 25.0%
! AAACAAAACTTAACGATAAG+AGG - chr4_3:46164113-46164132 None:intergenic 25.0%
! AATCATAATAACTAAATGGG+AGG - chr4_3:46164302-46164321 None:intergenic 25.0%
! GCATATAAAATGTTACCTTA+AGG - chr4_3:46164326-46164345 None:intergenic 25.0%
! CAAAACAACATTTATATCAC+AGG - chr4_3:46164437-46164456 None:intergenic 25.0%
! TCAAACATAATTGAGTAGAA+AGG - chr4_3:46164462-46164481 None:intergenic 25.0%
! GGAATGGATAAACTATAATT+AGG - chr4_3:46164586-46164605 None:intergenic 25.0%
!!! TCTACCTTATGGATTTTAAT+AGG - chr4_3:46164763-46164782 None:intergenic 25.0%
! TACAATTGTTATCCAATCAA+AGG + chr4_3:46164874-46164893 Msa0643330:three_prime_UTR 25.0%
!!! CATTTTAGTATGTATGACTT+CGG + chr4_3:46164973-46164992 Msa0643330:three_prime_UTR 25.0%
! AGGAGAAATACCTTATATTT+AGG + chr4_3:46165095-46165114 Msa0643330:three_prime_UTR 25.0%
! GGAGAAATACCTTATATTTA+GGG + chr4_3:46165096-46165115 Msa0643330:three_prime_UTR 25.0%
TACTAACTTTGATTCATTGG+GGG - chr4_3:46162068-46162087 None:intergenic 30.0%
CTACTAACTTTGATTCATTG+GGG - chr4_3:46162069-46162088 None:intergenic 30.0%
AATCAAAGTTAGTAGAAGAG+AGG + chr4_3:46162074-46162093 Msa0643330:five_prime_UTR 30.0%
!! TACAACTCTTTTCAAGCAAT+TGG + chr4_3:46162204-46162223 Msa0643330:CDS 30.0%
!!! AGCAATATTTTGTTGGTTCA+AGG + chr4_3:46162390-46162409 Msa0643330:intron 30.0%
ATCCAAAATACTTATCTGGT+AGG + chr4_3:46162756-46162775 Msa0643330:intron 30.0%
! ATCCTACCAGATAAGTATTT+TGG - chr4_3:46162761-46162780 None:intergenic 30.0%
GCAAGAAAAGTGATAAAAAC+GGG - chr4_3:46162897-46162916 None:intergenic 30.0%
CGCAAGAAAAGTGATAAAAA+CGG - chr4_3:46162898-46162917 None:intergenic 30.0%
!! TTTTTATCACTTTTCTTGCG+TGG + chr4_3:46162898-46162917 Msa0643330:intron 30.0%
!! TACTTTTTATTCGATCGAAC+TGG + chr4_3:46162943-46162962 Msa0643330:intron 30.0%
GACTTATATTCAGAAATTGG+TGG + chr4_3:46162994-46163013 Msa0643330:intron 30.0%
TATATCTCTACTCTAACAAC+TGG + chr4_3:46163068-46163087 Msa0643330:intron 30.0%
AACAGTTTAAACAGAAAGCA+AGG - chr4_3:46163246-46163265 None:intergenic 30.0%
TTAGGTACTCATATTCATCA+AGG + chr4_3:46163314-46163333 Msa0643330:intron 30.0%
! ATTCTCTAAAAAAAGGGGAA+GGG - chr4_3:46163505-46163524 None:intergenic 30.0%
! CTGACATTCTCTAAAAAAAG+GGG - chr4_3:46163510-46163529 None:intergenic 30.0%
! CCTGACATTCTCTAAAAAAA+GGG - chr4_3:46163511-46163530 None:intergenic 30.0%
! ACCTGACATTCTCTAAAAAA+AGG - chr4_3:46163512-46163531 None:intergenic 30.0%
TCTCAAATTATTAACGGTGT+CGG - chr4_3:46163630-46163649 None:intergenic 30.0%
AGTTAGGTATAAATGAAGCA+CGG - chr4_3:46163722-46163741 None:intergenic 30.0%
GTATACCATGAAAATGAGTT+AGG - chr4_3:46163738-46163757 None:intergenic 30.0%
! GATGATTTTGCTTCAATCTT+TGG + chr4_3:46163818-46163837 Msa0643330:intron 30.0%
GATAGAAAAATGCCTGATAT+AGG - chr4_3:46163910-46163929 None:intergenic 30.0%
TTCTATATTCTCCATACTGA+TGG + chr4_3:46163936-46163955 Msa0643330:CDS 30.0%
AGGATAAATCACAATAAACG+CGG - chr4_3:46164045-46164064 None:intergenic 30.0%
GTTTATTGTGATTTATCCTG+TGG + chr4_3:46164046-46164065 Msa0643330:CDS 30.0%
! TATATGCAACTGATTAGTCA+TGG + chr4_3:46164339-46164358 Msa0643330:intron 30.0%
TTATAGTTTATCCATTCCTC+TGG + chr4_3:46164588-46164607 Msa0643330:CDS 30.0%
!! TGGATTTTAATAGGACTCTT+TGG - chr4_3:46164754-46164773 None:intergenic 30.0%
GAGTCCTATTAAAATCCATA+AGG + chr4_3:46164756-46164775 Msa0643330:three_prime_UTR 30.0%
GGAATAAACTCTTCAAATAC+AGG - chr4_3:46164954-46164973 None:intergenic 30.0%
CGAAGTCATACATACTAAAA+TGG - chr4_3:46164975-46164994 None:intergenic 30.0%
! TTTTAATCTTGCAAGTCGAA+AGG + chr4_3:46164996-46165015 Msa0643330:three_prime_UTR 30.0%
TTCTTCAAAGCAAAAACAAG+AGG - chr4_3:46165036-46165055 None:intergenic 30.0%
!! ACTACTCACTGTATTTTTGT+TGG + chr4_3:46165055-46165074 Msa0643330:three_prime_UTR 30.0%
!! TGGAATTAGCTTTGAGAATT+AGG + chr4_3:46165075-46165094 Msa0643330:three_prime_UTR 30.0%
ACTAACTTTGATTCATTGGG+GGG - chr4_3:46162067-46162086 None:intergenic 35.0%
!! CCTTTTTCACAAAACACCAA+TGG - chr4_3:46162107-46162126 None:intergenic 35.0%
!! CCATTGGTGTTTTGTGAAAA+AGG + chr4_3:46162104-46162123 Msa0643330:five_prime_UTR 35.0%
! GAGAGCCATTGTTGTTATTA+TGG - chr4_3:46162157-46162176 None:intergenic 35.0%
CTTGAAAAGAGTTGTAAGCA+AGG - chr4_3:46162200-46162219 None:intergenic 35.0%
!! ACTCTTTTCAAGCAATTGGA+TGG + chr4_3:46162208-46162227 Msa0643330:CDS 35.0%
! ATACTGACTAATTAAGGTGC+CGG - chr4_3:46162304-46162323 None:intergenic 35.0%
GCATTCTTGGAAGTTATACA+CGG + chr4_3:46162429-46162448 Msa0643330:CDS 35.0%
CATGAAATGAATTTCAGGAC+TGG + chr4_3:46162543-46162562 Msa0643330:intron 35.0%
! TTGATGCATCTTGATGACAT+AGG + chr4_3:46162665-46162684 Msa0643330:intron 35.0%
AGAAAAGTGATAAAAACGGG+AGG - chr4_3:46162894-46162913 None:intergenic 35.0%
TTAAACAGAAAGCAAGGTCA+AGG - chr4_3:46163240-46163259 None:intergenic 35.0%
! TGATAAGCATTGTTGGTGTT+AGG + chr4_3:46163296-46163315 Msa0643330:intron 35.0%
! TTCTCTAAAAAAAGGGGAAG+GGG - chr4_3:46163504-46163523 None:intergenic 35.0%
! CATTCTCTAAAAAAAGGGGA+AGG - chr4_3:46163506-46163525 None:intergenic 35.0%
!!! CCCTTTTTTTAGAGAATGTC+AGG + chr4_3:46163508-46163527 Msa0643330:intron 35.0%
TGCTTATACCCTATGAAACA+CGG + chr4_3:46163576-46163595 Msa0643330:intron 35.0%
CATTATGCTTTCAGTTGCTT+GGG + chr4_3:46163864-46163883 Msa0643330:CDS 35.0%
TTAGTCGATACAATGCAGTA+TGG + chr4_3:46164214-46164233 Msa0643330:intron 35.0%
TTCTTCTATAACCTCACTCT+TGG + chr4_3:46164372-46164391 Msa0643330:intron 35.0%
ATTGCACGTAGAATTTCGTT+CGG + chr4_3:46164407-46164426 Msa0643330:intron 35.0%
TATAGTTTGAACCAGAGGAA+TGG - chr4_3:46164602-46164621 None:intergenic 35.0%
! CTTATGCTCTTTTCTTGTCA+CGG - chr4_3:46164667-46164686 None:intergenic 35.0%
CTTTCTGTACCATTGTTACT+AGG + chr4_3:46164728-46164747 Msa0643330:three_prime_UTR 35.0%
AAATCTGTGCAGAATAATGC+AGG + chr4_3:46164782-46164801 Msa0643330:three_prime_UTR 35.0%
AACTCTTCAAATACAGGCTT+GGG - chr4_3:46164948-46164967 None:intergenic 35.0%
AAACTCTTCAAATACAGGCT+TGG - chr4_3:46164949-46164968 None:intergenic 35.0%
! AGAAGCATAAGTTCCAGTGA+TGG - chr4_3:46162280-46162299 None:intergenic 40.0%
TCTTCAATGTGCTGCATTCT+TGG + chr4_3:46162416-46162435 Msa0643330:CDS 40.0%
GACAGTGTAAAACCTACCAA+TGG - chr4_3:46162457-46162476 None:intergenic 40.0%
GTTGCTTCCTTTGATGCAAT+GGG + chr4_3:46162579-46162598 Msa0643330:intron 40.0%
TTGCTTCCTTTGATGCAATG+GGG + chr4_3:46162580-46162599 Msa0643330:intron 40.0%
GAGATGGGATCGAATTACAT+CGG - chr4_3:46162826-46162845 None:intergenic 40.0%
GAAACACCTGAGTTAGAGAT+GGG - chr4_3:46162841-46162860 None:intergenic 40.0%
GGAATACAAACGATTGATCG+TGG - chr4_3:46163155-46163174 None:intergenic 40.0%
GTTCGTATCCGTGTTTCATA+GGG - chr4_3:46163587-46163606 None:intergenic 40.0%
TGTTCGTATCCGTGTTTCAT+AGG - chr4_3:46163588-46163607 None:intergenic 40.0%
GCATTATGCTTTCAGTTGCT+TGG + chr4_3:46163863-46163882 Msa0643330:CDS 40.0%
CTGATATAGGTCATCCAAGA+AGG - chr4_3:46163897-46163916 None:intergenic 40.0%
CTTCTTGGATGACCTATATC+AGG + chr4_3:46163895-46163914 Msa0643330:CDS 40.0%
TCCATACTGATGGAGAAATG+AGG + chr4_3:46163946-46163965 Msa0643330:CDS 40.0%
ACCTCATTTCTCCATCAGTA+TGG - chr4_3:46163950-46163969 None:intergenic 40.0%
CATATGAACTCACTTTCTCC+AGG - chr4_3:46164080-46164099 None:intergenic 40.0%
ACTAAATGGGAGGCTTGAAA+AGG - chr4_3:46164292-46164311 None:intergenic 40.0%
TGAGTCAATTTCCAAGAGTG+AGG - chr4_3:46164386-46164405 None:intergenic 40.0%
ATGCTTCATTTCTCTCGATC+AGG + chr4_3:46164559-46164578 Msa0643330:intron 40.0%
! CGTGACAAGAAAAGAGCATA+AGG + chr4_3:46164665-46164684 Msa0643330:CDS 40.0%
ACTCTTTGGCCTAGTAACAA+TGG - chr4_3:46164740-46164759 None:intergenic 40.0%
CTGCACAGATTTCTACCTTA+TGG - chr4_3:46164774-46164793 None:intergenic 40.0%
ACTCTTCAAATACAGGCTTG+GGG - chr4_3:46164947-46164966 None:intergenic 40.0%
CCACTGCTACCCTAAATATA+AGG - chr4_3:46165108-46165127 None:intergenic 40.0%
! CCTTATATTTAGGGTAGCAG+TGG + chr4_3:46165105-46165124 Msa0643330:three_prime_UTR 40.0%
AACTTTGATTCATTGGGGGG+AGG - chr4_3:46162064-46162083 None:intergenic 45.0%
GAAGAGAGGAGAGAATCCAT+TGG + chr4_3:46162088-46162107 Msa0643330:five_prime_UTR 45.0%
AGCATAAGTTCCAGTGATGG+AGG - chr4_3:46162277-46162296 None:intergenic 45.0%
ACTGGAACTTATGCTTCTGC+CGG + chr4_3:46162282-46162301 Msa0643330:CDS 45.0%
!! GAAGTTATACACGGTGCCAT+TGG + chr4_3:46162438-46162457 Msa0643330:CDS 45.0%
!! TTATACACGGTGCCATTGGT+AGG + chr4_3:46162442-46162461 Msa0643330:intron 45.0%
CGTTGCTTCCTTTGATGCAA+TGG + chr4_3:46162578-46162597 Msa0643330:intron 45.0%
ACTTTGTCCTTGCCATTGTC+AGG + chr4_3:46162614-46162633 Msa0643330:intron 45.0%
CTTTGTCCTTGCCATTGTCA+GGG + chr4_3:46162615-46162634 Msa0643330:intron 45.0%
TTTGTCCTTGCCATTGTCAG+GGG + chr4_3:46162616-46162635 Msa0643330:intron 45.0%
CTCATGAATTCCCCTGACAA+TGG - chr4_3:46162629-46162648 None:intergenic 45.0%
CATTGTCAGGGGAATTCATG+AGG + chr4_3:46162627-46162646 Msa0643330:intron 45.0%
ATGGGATCGAATTACATCGG+AGG - chr4_3:46162823-46162842 None:intergenic 45.0%
TTCGATCCCATCTCTAACTC+AGG + chr4_3:46162832-46162851 Msa0643330:intron 45.0%
CGAAACACCTGAGTTAGAGA+TGG - chr4_3:46162842-46162861 None:intergenic 45.0%
TTTCGTTGTGTGCTTTCTCC+AGG + chr4_3:46162857-46162876 Msa0643330:intron 45.0%
TAAAAACGGGAGGTAACTCC+TGG - chr4_3:46162884-46162903 None:intergenic 45.0%
! ACTTTTCTTGCGTGGAGCAT+AGG + chr4_3:46162906-46162925 Msa0643330:intron 45.0%
CACTATATTGTCCGAGACGT+AGG + chr4_3:46163113-46163132 Msa0643330:intron 45.0%
AAAAGGGGAAGGGGTTGTAA+AGG - chr4_3:46163495-46163514 None:intergenic 45.0%
! TTCTTGGATTAGGTGTGTCC+TGG - chr4_3:46163695-46163714 None:intergenic 45.0%
AATGAAGCACGGACACTTCT+TGG - chr4_3:46163711-46163730 None:intergenic 45.0%
GCTTGGGAAATTGTCCTTCT+TGG + chr4_3:46163880-46163899 Msa0643330:CDS 45.0%
! TGCAGTATGGTTGATGTACC+AGG + chr4_3:46164227-46164246 Msa0643330:intron 45.0%
!! CCTTTATAATTGGAAGCGCC+TGG - chr4_3:46164248-46164267 None:intergenic 45.0%
CCAGGCGCTTCCAATTATAA+AGG + chr4_3:46164245-46164264 Msa0643330:CDS 45.0%
GCAGGTATAGTTTGAACCAG+AGG - chr4_3:46164607-46164626 None:intergenic 45.0%
ACCTGCATTTGTTCAAGCAG+CGG + chr4_3:46164621-46164640 Msa0643330:CDS 45.0%
TTTGATTCATTGGGGGGAGG+TGG - chr4_3:46162061-46162080 None:intergenic 50.0%
! AGTTCCAGTGATGGAGGAAG+TGG - chr4_3:46162271-46162290 None:intergenic 50.0%
!! ATTTCAGGACTGGTTCCGAG+CGG + chr4_3:46162553-46162572 Msa0643330:intron 50.0%
CTTCCTTTGATGCAATGGGG+AGG + chr4_3:46162583-46162602 Msa0643330:intron 50.0%
CTTCCTCCCCATTGCATCAA+AGG - chr4_3:46162589-46162608 None:intergenic 50.0%
CTTTGATGCAATGGGGAGGA+AGG + chr4_3:46162587-46162606 Msa0643330:intron 50.0%
GAATTCCCCTGACAATGGCA+AGG - chr4_3:46162624-46162643 None:intergenic 50.0%
GACCAATTGTGCCTACGTCT+CGG - chr4_3:46163127-46163146 None:intergenic 50.0%
ACACGGATACGAACACGACA+TGG + chr4_3:46163593-46163612 Msa0643330:intron 50.0%
TATGTGACATGTCCGACACC+AGG + chr4_3:46163674-46163693 Msa0643330:intron 50.0%
GATTAGGTGTGTCCTGGTGT+CGG - chr4_3:46163689-46163708 None:intergenic 50.0%
GCACGGACACTTCTTGGATT+AGG - chr4_3:46163705-46163724 None:intergenic 50.0%
!! TATCCTGTGGGAGTGTTTCC+TGG + chr4_3:46164059-46164078 Msa0643330:CDS 50.0%
CTCTCCACTTCCTCCATCAC+TGG + chr4_3:46162264-46162283 Msa0643330:CDS 55.0%
AAAGGAAGCAACGCTCCGCT+CGG - chr4_3:46162571-46162590 None:intergenic 55.0%
TGTGTGCTTTCTCCAGGTCC+AGG + chr4_3:46162863-46162882 Msa0643330:intron 55.0%
GTCCGAGACGTAGGCACAAT+TGG + chr4_3:46163122-46163141 Msa0643330:intron 55.0%
TCTCCAGGAAACACTCCCAC+AGG - chr4_3:46164065-46164084 None:intergenic 55.0%
GCCGCTGCTTGAACAAATGC+AGG - chr4_3:46164625-46164644 None:intergenic 55.0%
ATACAGGCTTGGGGTGACAC+AGG - chr4_3:46164938-46164957 None:intergenic 55.0%
TCTTGCGTGGAGCATAGGCG+AGG + chr4_3:46162911-46162930 Msa0643330:intron 60.0%
CGGGAGGTAACTCCTGGACC+TGG - chr4_3:46162878-46162897 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 46162045 46165128 46162045 ID=Msa0643330;Name=Msa0643330
chr4_3 mRNA 46162045 46165128 46162045 ID=Msa0643330-mRNA-1;Parent=Msa0643330;Name=Msa0643330-mRNA-1;_AED=0.17;_eAED=0.17;_QI=123|0.6|0.83|1|0|0.16|6|443|195
chr4_3 exon 46162045 46162315 46162045 ID=Msa0643330-mRNA-1:exon:10684;Parent=Msa0643330-mRNA-1
chr4_3 exon 46162392 46162459 46162392 ID=Msa0643330-mRNA-1:exon:10685;Parent=Msa0643330-mRNA-1
chr4_3 exon 46163849 46163967 46163849 ID=Msa0643330-mRNA-1:exon:10686;Parent=Msa0643330-mRNA-1
chr4_3 exon 46164037 46164086 46164037 ID=Msa0643330-mRNA-1:exon:10687;Parent=Msa0643330-mRNA-1
chr4_3 exon 46164232 46164329 46164232 ID=Msa0643330-mRNA-1:exon:10688;Parent=Msa0643330-mRNA-1
chr4_3 exon 46164581 46165128 46164581 ID=Msa0643330-mRNA-1:exon:10689;Parent=Msa0643330-mRNA-1
chr4_3 five_prime_UTR 46162045 46162167 46162045 ID=Msa0643330-mRNA-1:five_prime_utr;Parent=Msa0643330-mRNA-1
chr4_3 CDS 46162168 46162315 46162168 ID=Msa0643330-mRNA-1:cds;Parent=Msa0643330-mRNA-1
chr4_3 CDS 46162392 46162459 46162392 ID=Msa0643330-mRNA-1:cds;Parent=Msa0643330-mRNA-1
chr4_3 CDS 46163849 46163967 46163849 ID=Msa0643330-mRNA-1:cds;Parent=Msa0643330-mRNA-1
chr4_3 CDS 46164037 46164086 46164037 ID=Msa0643330-mRNA-1:cds;Parent=Msa0643330-mRNA-1
chr4_3 CDS 46164232 46164329 46164232 ID=Msa0643330-mRNA-1:cds;Parent=Msa0643330-mRNA-1
chr4_3 CDS 46164581 46164685 46164581 ID=Msa0643330-mRNA-1:cds;Parent=Msa0643330-mRNA-1
chr4_3 three_prime_UTR 46164686 46165128 46164686 ID=Msa0643330-mRNA-1:three_prime_utr;Parent=Msa0643330-mRNA-1
Gene Sequence

>Msa0643330

ATGGCTCTCAAACTATCAACACTTTATCTCCTTGCTTACAACTCTTTTCAAGCAATTGGATGGTTCGTATCATTAATCATCATTTTGTACAATCTTCTCTCCACTTCCTCCATCACTGGAACTTATGCTTCTGCCGGCACCTTAATTACAATATTTTGTTGGTTCAAGGTTTTCTTCAATGTGCTGCATTCTTGGAAGTTATACACGGTGCCATTGATCATTAGATATTCGCATTATGCTTTCAGTTGCTTGGGAAATTGTCCTTCTTGGATGACCTATATCAGGCATTTTTCTATCTTACTATTCTATATTCTCCATACTGATGGAGAAATGAGGTACACCGCGTTTATTGTGATTTATCCTGTGGGAGTGTTTCCTGGAGAAATATGGTTGATGTACCAGGCGCTTCCAATTATAAAGGAGAAGAATATCTATGCAGATTCCTTTTCAAGCCTCCCATTTAGTTATTATGATTTCCTTAAGGTCCTAATTATAGTTTATCCATTCCTCTGGTTCAAACTATACCTGCATTTGTTCAAGCAGCGGCGTTCAAAACTTTATAAACGCCGTGACAAGAAAAGAGCATAA

Protein sequence

>Msa0643330

MALKLSTLYLLAYNSFQAIGWFVSLIIILYNLLSTSSITGTYASAGTLITIFCWFKVFFNVLHSWKLYTVPLIIRYSHYAFSCLGNCPSWMTYIRHFSILLFYILHTDGEMRYTAFIVIYPVGVFPGEIWLMYQALPIIKEKNIYADSFSSLPFSYYDFLKVLIIVYPFLWFKLYLHLFKQRRSKLYKRRDKKRA*