Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100540 | XP_013465813.1 | 98.889 | 360 | 4 | 0 | 1 | 360 | 1 | 360 | 0.0 | 742 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100540 | sp|Q8W4E6|HPAT1_ARATH | 81.421 | 366 | 62 | 3 | 1 | 360 | 1 | 366 | 0.0 | 602 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100540 | A0A072VCX6 | 98.889 | 360 | 4 | 0 | 1 | 360 | 1 | 360 | 0.0 | 742 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002110 | Msa0100540 | -0.802285 | 6.031113e-49 | -8.615850e-47 |
| Msa0006480 | Msa0100540 | 0.984932 | 5.086324e-162 | -8.615850e-47 |
| Msa0011410 | Msa0100540 | -0.807326 | 5.339335e-50 | -8.615850e-47 |
| Msa0011440 | Msa0100540 | -0.806581 | 7.672267e-50 | -8.615850e-47 |
| Msa0011450 | Msa0100540 | -0.801911 | 7.199846e-49 | -8.615850e-47 |
| Msa0017300 | Msa0100540 | -0.827383 | 1.613028e-54 | -8.615850e-47 |
| Msa0025570 | Msa0100540 | 0.806058 | 9.892885e-50 | -8.615850e-47 |
| Msa0063940 | Msa0100540 | 0.805191 | 1.503812e-49 | -8.615850e-47 |
| Msa0065670 | Msa0100540 | -0.809843 | 1.548259e-50 | -8.615850e-47 |
| Msa0073110 | Msa0100540 | 0.804417 | 2.182060e-49 | -8.615850e-47 |
| Msa0095810 | Msa0100540 | -0.800166 | 1.637363e-48 | -8.615850e-47 |
| Msa0100540 | Msa0101530 | 0.826355 | 2.839302e-54 | -8.615850e-47 |
| Msa0100540 | Msa0105140 | -0.808112 | 3.635073e-50 | -8.615850e-47 |
| Msa0100540 | Msa0127350 | -0.807564 | 4.753293e-50 | -8.615850e-47 |
| Msa0100540 | Msa0138990 | -0.804790 | 1.823655e-49 | -8.615850e-47 |
| Msa0100540 | Msa0141410 | 0.819863 | 9.290786e-53 | -8.615850e-47 |
| Msa0100540 | Msa0148960 | 0.971126 | 1.126257e-132 | -8.615850e-47 |
| Msa0100540 | Msa0151380 | -0.816604 | 5.075840e-52 | -8.615850e-47 |
| Msa0100540 | Msa0151510 | -0.800712 | 1.267052e-48 | -8.615850e-47 |
| Msa0100540 | Msa0158890 | -0.816385 | 5.683016e-52 | -8.615850e-47 |
| Msa0100540 | Msa0167160 | -0.801387 | 9.221353e-49 | -8.615850e-47 |
| Msa0100540 | Msa0186400 | -0.808016 | 3.810402e-50 | -8.615850e-47 |
| Msa0100540 | Msa0189560 | -0.800381 | 1.480175e-48 | -8.615850e-47 |
| Msa0100540 | Msa0207250 | -0.804597 | 2.001846e-49 | -8.615850e-47 |
| Msa0100540 | Msa0216150 | -0.806088 | 9.749261e-50 | -8.615850e-47 |
| Msa0100540 | Msa0229350 | -0.817178 | 3.772658e-52 | -8.615850e-47 |
| Msa0100540 | Msa0234150 | 0.824389 | 8.289167e-54 | -8.615850e-47 |
| Msa0100540 | Msa0242720 | 0.806563 | 7.741307e-50 | -8.615850e-47 |
| Msa0100540 | Msa0253230 | -0.802591 | 5.215975e-49 | -8.615850e-47 |
| Msa0100540 | Msa0256920 | 0.810376 | 1.189010e-50 | -8.615850e-47 |
| Msa0100540 | Msa0265650 | 0.800400 | 1.467284e-48 | -8.615850e-47 |
| Msa0100540 | Msa0266140 | -0.814833 | 1.259380e-51 | -8.615850e-47 |
| Msa0100540 | Msa0267450 | -0.807880 | 4.072200e-50 | -8.615850e-47 |
| Msa0100540 | Msa0267510 | -0.809322 | 2.003770e-50 | -8.615850e-47 |
| Msa0100540 | Msa0270730 | -0.801958 | 7.042857e-49 | -8.615850e-47 |
| Msa0100540 | Msa0287480 | 0.830250 | 3.263531e-55 | -8.615850e-47 |
| Msa0100540 | Msa0304060 | -0.804654 | 1.946891e-49 | -8.615850e-47 |
| Msa0100540 | Msa0318490 | 0.804360 | 2.242828e-49 | -8.615850e-47 |
| Msa0100540 | Msa0326170 | -0.831703 | 1.436643e-55 | -8.615850e-47 |
| Msa0100540 | Msa0331070 | -0.827293 | 1.694624e-54 | -8.615850e-47 |
| Msa0100540 | Msa0340700 | -0.808976 | 2.377148e-50 | -8.615850e-47 |
| Msa0100540 | Msa0364030 | -0.813739 | 2.197740e-51 | -8.615850e-47 |
| Msa0100540 | Msa0364910 | -0.812446 | 4.221816e-51 | -8.615850e-47 |
| Msa0100540 | Msa0378320 | 0.800004 | 1.766111e-48 | -8.615850e-47 |
| Msa0100540 | Msa0386880 | 0.810157 | 1.325293e-50 | -8.615850e-47 |
| Msa0100540 | Msa0388210 | 0.801007 | 1.103097e-48 | -8.615850e-47 |
| Msa0100540 | Msa0403740 | -0.813216 | 2.863537e-51 | -8.615850e-47 |
| Msa0100540 | Msa0412580 | -0.835128 | 2.009172e-56 | -8.615850e-47 |
| Msa0100540 | Msa0419150 | -0.810206 | 1.293372e-50 | -8.615850e-47 |
| Msa0100540 | Msa0428270 | -0.802049 | 6.746995e-49 | -8.615850e-47 |
| Msa0100540 | Msa0456450 | -0.813247 | 2.819139e-51 | -8.615850e-47 |
| Msa0100540 | Msa0457070 | -0.828370 | 9.337251e-55 | -8.615850e-47 |
| Msa0100540 | Msa0464980 | -0.802908 | 4.488290e-49 | -8.615850e-47 |
| Msa0100540 | Msa0480900 | -0.804906 | 1.724778e-49 | -8.615850e-47 |
| Msa0100540 | Msa0523420 | -0.809707 | 1.656134e-50 | -8.615850e-47 |
| Msa0100540 | Msa0525180 | -0.810646 | 1.039374e-50 | -8.615850e-47 |
| Msa0100540 | Msa0531050 | 0.801905 | 7.221784e-49 | -8.615850e-47 |
| Msa0100540 | Msa0550980 | -0.801793 | 7.614402e-49 | -8.615850e-47 |
| Msa0100540 | Msa0557250 | 0.810723 | 1.000491e-50 | -8.615850e-47 |
| Msa0100540 | Msa0557440 | -0.806505 | 7.964061e-50 | -8.615850e-47 |
| Msa0100540 | Msa0560950 | 0.805955 | 1.039435e-49 | -8.615850e-47 |
| Msa0100540 | Msa0572730 | -0.809603 | 1.744054e-50 | -8.615850e-47 |
| Msa0100540 | Msa0580410 | -0.801167 | 1.023075e-48 | -8.615850e-47 |
| Msa0100540 | Msa0580890 | -0.809398 | 1.930254e-50 | -8.615850e-47 |
| Msa0100540 | Msa0582270 | -0.819285 | 1.258780e-52 | -8.615850e-47 |
| Msa0100540 | Msa0583270 | -0.821001 | 5.092989e-53 | -8.615850e-47 |
| Msa0100540 | Msa0588040 | 0.801777 | 7.672532e-49 | -8.615850e-47 |
| Msa0100540 | Msa0590620 | -0.852253 | 5.211216e-61 | -8.615850e-47 |
| Msa0100540 | Msa0597370 | -0.814190 | 1.747999e-51 | -8.615850e-47 |
| Msa0100540 | Msa0601380 | 0.813064 | 3.092555e-51 | -8.615850e-47 |
| Msa0100540 | Msa0603310 | 0.831067 | 2.058876e-55 | -8.615850e-47 |
| Msa0100540 | Msa0615070 | 0.826014 | 3.422723e-54 | -8.615850e-47 |
| Msa0100540 | Msa0616890 | -0.828050 | 1.114987e-54 | -8.615850e-47 |
| Msa0100540 | Msa0644330 | 0.822096 | 2.843105e-53 | -8.615850e-47 |
| Msa0100540 | Msa0676570 | -0.851837 | 6.839318e-61 | -8.615850e-47 |
| Msa0100540 | Msa0690100 | -0.812138 | 4.929166e-51 | -8.615850e-47 |
| Msa0100540 | Msa0695250 | -0.803591 | 3.239711e-49 | -8.615850e-47 |
| Msa0100540 | Msa0701800 | -0.827177 | 1.806447e-54 | -8.615850e-47 |
| Msa0100540 | Msa0736920 | 0.803983 | 2.686333e-49 | -8.615850e-47 |
| Msa0100540 | Msa0742370 | -0.828402 | 9.174225e-55 | -8.615850e-47 |
| Msa0100540 | Msa0750490 | -0.804796 | 1.818678e-49 | -8.615850e-47 |
| Msa0100540 | Msa0778570 | 0.803457 | 3.454654e-49 | -8.615850e-47 |
| Msa0100540 | Msa0779450 | -0.817665 | 2.931687e-52 | -8.615850e-47 |
| Msa0100540 | Msa0795910 | -0.800467 | 1.422064e-48 | -8.615850e-47 |
| Msa0100540 | Msa0823480 | -0.800073 | 1.710396e-48 | -8.615850e-47 |
| Msa0100540 | Msa0829250 | -0.804838 | 1.782154e-49 | -8.615850e-47 |
| Msa0100540 | Msa0832160 | -0.800174 | 1.631332e-48 | -8.615850e-47 |
| Msa0100540 | Msa0862480 | -0.814131 | 1.801397e-51 | -8.615850e-47 |
| Msa0100540 | Msa0901270 | 0.808240 | 3.412709e-50 | -8.615850e-47 |
| Msa0100540 | Msa0945160 | -0.802683 | 4.993089e-49 | -8.615850e-47 |
| Msa0100540 | Msa0964400 | -0.810374 | 1.190119e-50 | -8.615850e-47 |
| Msa0100540 | Msa0971780 | -0.801492 | 8.777639e-49 | -8.615850e-47 |
| Msa0100540 | Msa1001120 | 0.824669 | 7.122157e-54 | -8.615850e-47 |
| Msa0100540 | Msa1002550 | -0.801367 | 9.309401e-49 | -8.615850e-47 |
| Msa0100540 | Msa1014550 | -0.806741 | 7.098155e-50 | -8.615850e-47 |
| Msa0100540 | Msa1015360 | 0.861216 | 1.198730e-63 | -8.615850e-47 |
| Msa0100540 | Msa1022420 | 0.810032 | 1.409918e-50 | -8.615850e-47 |
| Msa0100540 | Msa1036260 | -0.800144 | 1.653859e-48 | -8.615850e-47 |
| Msa0100540 | Msa1075090 | 0.800198 | 1.612473e-48 | -8.615850e-47 |
| Msa0100540 | Msa1102410 | -0.802685 | 4.988276e-49 | -8.615850e-47 |
| Msa0100540 | Msa1106730 | -0.811104 | 8.271725e-51 | -8.615850e-47 |
| Msa0100540 | Msa1121720 | -0.826928 | 2.072441e-54 | -8.615850e-47 |
| Msa0100540 | Msa1130150 | -0.806114 | 9.625101e-50 | -8.615850e-47 |
| Msa0100540 | Msa1132880 | -0.802563 | 5.288174e-49 | -8.615850e-47 |
| Msa0100540 | Msa1184680 | 0.810073 | 1.381736e-50 | -8.615850e-47 |
| Msa0100540 | Msa1191530 | -0.813601 | 2.356215e-51 | -8.615850e-47 |
| Msa0100540 | Msa1197720 | 0.815914 | 7.240595e-52 | -8.615850e-47 |
| Msa0100540 | Msa1199540 | -0.810525 | 1.103972e-50 | -8.615850e-47 |
| Msa0100540 | Msa1202470 | 0.819870 | 9.254657e-53 | -8.615850e-47 |
| Msa0100540 | Msa1205270 | -0.810608 | 1.059249e-50 | -8.615850e-47 |
| Msa0100540 | Msa1209990 | -0.816561 | 5.189833e-52 | -8.615850e-47 |
| Msa0100540 | Msa1212150 | -0.801638 | 8.192646e-49 | -8.615850e-47 |
| Msa0100540 | Msa1254910 | 0.801086 | 1.062659e-48 | -8.615850e-47 |
| Msa0100540 | Msa1266120 | -0.808274 | 3.356589e-50 | -8.615850e-47 |
| Msa0100540 | Msa1269200 | 0.809800 | 1.581936e-50 | -8.615850e-47 |
| Msa0100540 | Msa1295210 | -0.800825 | 1.201892e-48 | -8.615850e-47 |
| Msa0100540 | Msa1298480 | -0.817651 | 2.952769e-52 | -8.615850e-47 |
| Msa0100540 | Msa1331570 | -0.819818 | 9.509636e-53 | -8.615850e-47 |
| Msa0100540 | Msa1341710 | -0.812053 | 5.145636e-51 | -8.615850e-47 |
| Msa0100540 | Msa1342360 | -0.813347 | 2.680746e-51 | -8.615850e-47 |
| Msa0100540 | Msa1343600 | 0.803934 | 2.750252e-49 | -8.615850e-47 |
| Msa0100540 | Msa1343980 | 0.816241 | 6.119181e-52 | -8.615850e-47 |
| Msa0100540 | Msa1356100 | -0.826294 | 2.934989e-54 | -8.615850e-47 |
| Msa0100540 | Msa1361980 | 0.807946 | 3.942887e-50 | -8.615850e-47 |
| Msa0100540 | Msa1368390 | 0.810129 | 1.343642e-50 | -8.615850e-47 |
| Msa0100540 | Msa1373420 | -0.801535 | 8.602028e-49 | -8.615850e-47 |
| Msa0100540 | Msa1375980 | -0.800453 | 1.431168e-48 | -8.615850e-47 |
| Msa0100540 | Msa1377980 | -0.813410 | 2.595845e-51 | -8.615850e-47 |
| Msa0100540 | Msa1384700 | 0.803000 | 4.296159e-49 | -8.615850e-47 |
| Msa0100540 | Msa1386910 | -0.806959 | 6.383992e-50 | -8.615850e-47 |
| Msa0100540 | Msa1395380 | -0.802471 | 5.524107e-49 | -8.615850e-47 |
| Msa0100540 | Msa1408230 | -0.810917 | 9.083273e-51 | -8.615850e-47 |
| Msa0100540 | Msa1408280 | -0.814115 | 1.815287e-51 | -8.615850e-47 |
| Msa0100540 | Msa1410500 | -0.808765 | 2.636616e-50 | -8.615850e-47 |
| Msa0100540 | Msa1415510 | -0.805973 | 1.030583e-49 | -8.615850e-47 |
| Msa0100540 | Msa1421630 | 0.818281 | 2.127926e-52 | -8.615850e-47 |
| Msa0100540 | Msa1454300 | -0.800414 | 1.457619e-48 | -8.615850e-47 |
| Msa0100540 | Msa1457770 | 0.808822 | 2.564066e-50 | -8.615850e-47 |
| Msa0100540 | Msa1459130 | -0.829306 | 5.542510e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100540 | MtrunA17_Chr1g0149621 | 98.889 | 360 | 4 | 0 | 1 | 360 | 1 | 360 | 0.0 | 742 |
| Msa0100540 | MtrunA17_Chr5g0441831 | 61.219 | 361 | 125 | 4 | 1 | 360 | 7 | 353 | 1.68e-162 | 459 |
| Msa0100540 | MtrunA17_Chr8g0353191 | 62.842 | 366 | 123 | 5 | 1 | 360 | 1 | 359 | 8.39e-161 | 454 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100540 | AT5G25265.1 | 81.421 | 366 | 62 | 3 | 1 | 360 | 1 | 366 | 0.0 | 602 |
| Msa0100540 | AT2G25260.1 | 72.702 | 359 | 91 | 5 | 4 | 360 | 5 | 358 | 0.0 | 530 |
| Msa0100540 | AT5G13500.2 | 71.924 | 317 | 85 | 3 | 46 | 360 | 43 | 357 | 2.68e-172 | 484 |
| Msa0100540 | AT5G13500.3 | 71.924 | 317 | 85 | 3 | 46 | 360 | 43 | 357 | 2.68e-172 | 484 |
| Msa0100540 | AT5G13500.1 | 71.924 | 317 | 85 | 3 | 46 | 360 | 43 | 357 | 2.68e-172 | 484 |
| Msa0100540 | AT3G01720.1 | 24.150 | 294 | 186 | 10 | 65 | 341 | 394 | 667 | 1.69e-12 | 69.3 |
Find 111 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAAGCTTTATCGGTTTC+AGG | 0.147915 | 1_3:-7009644 | None:intergenic |
| TTCATAATTCACTACACTTA+TGG | 0.167165 | 1_3:+7011128 | Msa0100540:CDS |
| CTAGGTGACTCTAGTGAAAA+TGG | 0.224137 | 1_3:+7012315 | Msa0100540:intron |
| GTTGCTCAACCTTTGCCTTC+TGG | 0.227974 | 1_3:+7007969 | Msa0100540:CDS |
| GCCGTTTCGTCTGCTCTTCA+TGG | 0.235074 | 1_3:+7009779 | Msa0100540:CDS |
| GACGAGTTTACGTTCAAATT+TGG | 0.238984 | 1_3:+7012609 | Msa0100540:three_prime_UTR |
| CCTGAAACCGATAAAGCTTT+TGG | 0.263522 | 1_3:+7009644 | Msa0100540:CDS |
| CACCCATCCAAAAGCTTTAT+CGG | 0.266241 | 1_3:-7009651 | None:intergenic |
| TATCTAGTTGGTGTTGAAAA+AGG | 0.267682 | 1_3:-7007471 | None:intergenic |
| ATGAAACATACCACACTTTC+CGG | 0.272009 | 1_3:-7011374 | None:intergenic |
| GAAGAAGTTGGTGAATTATT+AGG | 0.281680 | 1_3:-7007523 | None:intergenic |
| AATATTTCAATATGGTGTTT+TGG | 0.293227 | 1_3:-7012552 | None:intergenic |
| ATTGGATCTATATTGGTTAC+AGG | 0.301550 | 1_3:-7009296 | None:intergenic |
| CAAATGCCCATGGTCTATTA+AGG | 0.302361 | 1_3:-7009002 | None:intergenic |
| TTAAGTGGCATCTTGATTAC+TGG | 0.305393 | 1_3:-7007741 | None:intergenic |
| ACACAAGGACTTCATGATTC+AGG | 0.308069 | 1_3:+7009817 | Msa0100540:CDS |
| TGTTGGAGCAATCTTCTTAA+GGG | 0.314451 | 1_3:-7009588 | None:intergenic |
| ATTTCCAATTGGATCTATAT+TGG | 0.315891 | 1_3:-7009303 | None:intergenic |
| AGTGTAGAGTTATGTATTAT+TGG | 0.315997 | 1_3:+7007838 | Msa0100540:CDS |
| ATGTTACTGAGAATGTTATT+AGG | 0.323674 | 1_3:-7007629 | None:intergenic |
| AGCACTTTCTCATATTTCTT+AGG | 0.325931 | 1_3:-7009245 | None:intergenic |
| TGGTAAAACTGATCAGTATA+TGG | 0.343547 | 1_3:+7007929 | Msa0100540:CDS |
| TATTCCGAACTGGTCATCAT+AGG | 0.344222 | 1_3:+7012357 | Msa0100540:CDS |
| TCATAATTCACTACACTTAT+GGG | 0.346462 | 1_3:+7011129 | Msa0100540:CDS |
| TAAAATAAAATATTTCAATA+TGG | 0.350913 | 1_3:-7012560 | None:intergenic |
| TTTATTGATTGTTGTAGTTA+GGG | 0.356058 | 1_3:+7012585 | Msa0100540:three_prime_UTR |
| ATAATAGATCGGTACCTTCA+TGG | 0.360692 | 1_3:-7011162 | None:intergenic |
| ATGTTGGAGCAATCTTCTTA+AGG | 0.368822 | 1_3:-7009589 | None:intergenic |
| GATACCTTGCCAACAATTAC+AGG | 0.376521 | 1_3:-7009329 | None:intergenic |
| CATTCCATCTCTGGCTAAGT+TGG | 0.377427 | 1_3:-7009192 | None:intergenic |
| CTGGTATGGGTGGATTTACT+AGG | 0.390112 | 1_3:+7007895 | Msa0100540:CDS |
| GAAAGTGGTGATGACAATTC+TGG | 0.391728 | 1_3:+7007876 | Msa0100540:CDS |
| GGAAATTCACCTGTAATTGT+TGG | 0.394236 | 1_3:+7009320 | Msa0100540:CDS |
| GTTACAGGTCCGTTCTCCTC+AGG | 0.398056 | 1_3:-7009281 | None:intergenic |
| CTGATTCTGTTTACAATACA+TGG | 0.406387 | 1_3:+7007814 | Msa0100540:CDS |
| TTTGCCTTCTGGAATGGATC+AGG | 0.414709 | 1_3:+7007980 | Msa0100540:CDS |
| ATTACAGGTGAATTTCCAAT+TGG | 0.422481 | 1_3:-7009314 | None:intergenic |
| TGGTTCTGTCTATATCTAGT+TGG | 0.426997 | 1_3:-7007483 | None:intergenic |
| TGCAGCTCCCATTCCATCTC+TGG | 0.432516 | 1_3:-7009201 | None:intergenic |
| TCAACCTTTGCCTTCTGGAA+TGG | 0.434673 | 1_3:+7007974 | Msa0100540:CDS |
| TCTCTGGCTAAGTTGGGTAT+AGG | 0.438539 | 1_3:-7009185 | None:intergenic |
| ATTGCCACCACCTGGTGTTC+CGG | 0.439856 | 1_3:+7011355 | Msa0100540:CDS |
| TCGTCTGCTCTTCATGGTGT+TGG | 0.457117 | 1_3:+7009785 | Msa0100540:CDS |
| ATTCCATCTCTGGCTAAGTT+GGG | 0.459075 | 1_3:-7009191 | None:intergenic |
| AACATGGATGAATGTTTCCT+TGG | 0.468333 | 1_3:+7009607 | Msa0100540:CDS |
| GTAACCAATATAGATCCAAT+TGG | 0.470446 | 1_3:+7009299 | Msa0100540:CDS |
| TTAGGCTCGATATAAAAGAA+AGG | 0.471498 | 1_3:-7009227 | None:intergenic |
| CCACCATGGGACAAAGAACT+TGG | 0.473823 | 1_3:+7011098 | Msa0100540:CDS |
| AATCAGGGTGAACTGACATA+TGG | 0.476030 | 1_3:+7011269 | Msa0100540:intron |
| AAAGGTTGAGCAACAAAAGT+AGG | 0.477238 | 1_3:-7007960 | None:intergenic |
| TGTTTCCTTGGCAATGAAGA+AGG | 0.478316 | 1_3:+7009619 | Msa0100540:CDS |
| TTGCCAAGTTCTTTGTCCCA+TGG | 0.483106 | 1_3:-7011101 | None:intergenic |
| GGTTTCACAATGATATGATC+TGG | 0.489542 | 1_3:-7009164 | None:intergenic |
| CAACTTAGCCAGAGATGGAA+TGG | 0.497539 | 1_3:+7009193 | Msa0100540:CDS |
| TACGTTCAAATTTGGTACCT+CGG | 0.504706 | 1_3:+7012617 | Msa0100540:three_prime_UTR |
| TTCACCTGTAATTGTTGGCA+AGG | 0.504988 | 1_3:+7009325 | Msa0100540:CDS |
| ACATACAACATCATTATCTC+AGG | 0.505441 | 1_3:+7007657 | Msa0100540:CDS |
| CCGCAGCAAATATTCCGAAC+TGG | 0.517078 | 1_3:+7012347 | Msa0100540:CDS |
| TGGTGATGACAATTCTGGTA+TGG | 0.520121 | 1_3:+7007881 | Msa0100540:CDS |
| AACTTAGCCAGAGATGGAAT+GGG | 0.520799 | 1_3:+7009194 | Msa0100540:CDS |
| GTCATCATAGGGCTTTCTAC+AGG | 0.521846 | 1_3:+7012369 | Msa0100540:exon |
| TAGGCTCGATATAAAAGAAA+GGG | 0.524947 | 1_3:-7009226 | None:intergenic |
| TTATTAGGCGGCTATATGAA+AGG | 0.527083 | 1_3:-7007508 | None:intergenic |
| TATTAGGCGGCTATATGAAA+GGG | 0.529546 | 1_3:-7007507 | None:intergenic |
| TTTATTGATGGTTTACGTGA+AGG | 0.530199 | 1_3:-7007711 | None:intergenic |
| GCGTGCCATTTGTCACAGAT+TGG | 0.533569 | 1_3:+7012422 | Msa0100540:three_prime_UTR |
| CCAGGAAAATCTTGTCTCAA+AGG | 0.533851 | 1_3:-7007687 | None:intergenic |
| ACCATGAAGAGCAGACGAAA+CGG | 0.535360 | 1_3:-7009780 | None:intergenic |
| TAAGTGGCATCTTGATTACT+GGG | 0.536185 | 1_3:-7007740 | None:intergenic |
| AAGCCCTATGATGACCAGTT+CGG | 0.537283 | 1_3:-7012361 | None:intergenic |
| AGGATCCTTCTTCATTGCCA+AGG | 0.541651 | 1_3:-7009624 | None:intergenic |
| ACCACACTTTCCGGAACACC+AGG | 0.542603 | 1_3:-7011365 | None:intergenic |
| TTACAGGTCCGTTCTCCTCA+GGG | 0.544928 | 1_3:-7009280 | None:intergenic |
| TTTAAGAAGATGAAGGAAAG+TGG | 0.546825 | 1_3:+7007861 | Msa0100540:CDS |
| ATTATGTATGTCAGCCACCA+TGG | 0.547374 | 1_3:+7011084 | Msa0100540:intron |
| ATTCCGAACTGGTCATCATA+GGG | 0.555677 | 1_3:+7012358 | Msa0100540:CDS |
| CCAAGTTCTTTGTCCCATGG+TGG | 0.557973 | 1_3:-7011098 | None:intergenic |
| AATCTGACATTGCCACCACC+TGG | 0.559929 | 1_3:+7011347 | Msa0100540:CDS |
| AAGGAAACATTCATCCATGT+TGG | 0.564015 | 1_3:-7009605 | None:intergenic |
| TTACAGTGTGATCAGAATGC+AGG | 0.564930 | 1_3:+7012395 | Msa0100540:three_prime_UTR |
| ACATTGTCCTTAATAGACCA+TGG | 0.570525 | 1_3:+7008995 | Msa0100540:CDS |
| CATTGTCCTTAATAGACCAT+GGG | 0.571906 | 1_3:+7008996 | Msa0100540:CDS |
| AAGGTTGAGCAACAAAAGTA+GGG | 0.572523 | 1_3:-7007959 | None:intergenic |
| TTATTGGTTTAAGAAGATGA+AGG | 0.575689 | 1_3:+7007854 | Msa0100540:CDS |
| TCATGTGAAGAAGAAGAAGT+TGG | 0.577038 | 1_3:-7007535 | None:intergenic |
| ATACCCAACTTAGCCAGAGA+TGG | 0.578267 | 1_3:+7009188 | Msa0100540:CDS |
| TGATGCCAATCTGTGACAAA+TGG | 0.578611 | 1_3:-7012427 | None:intergenic |
| ATCATAGGGCTTTCTACAGG+TGG | 0.580592 | 1_3:+7012372 | Msa0100540:exon |
| TTATGTATGTCAGCCACCAT+GGG | 0.581129 | 1_3:+7011085 | Msa0100540:intron |
| GATGGTTTACGTGAAGGACC+AGG | 0.582960 | 1_3:-7007705 | None:intergenic |
| TACAGTGTGATCAGAATGCA+GGG | 0.583449 | 1_3:+7012396 | Msa0100540:three_prime_UTR |
| ACCTGGTGTTCCGGAAAGTG+TGG | 0.593682 | 1_3:+7011364 | Msa0100540:CDS |
| AGGCGGCTATATGAAAGGGT+TGG | 0.596018 | 1_3:-7007503 | None:intergenic |
| AAGTACTACCCTGAGGAGAA+CGG | 0.599409 | 1_3:+7009272 | Msa0100540:CDS |
| TTAAGAAGATTGCTCCAACA+TGG | 0.603507 | 1_3:+7009591 | Msa0100540:CDS |
| GGTGATGACAATTCTGGTAT+GGG | 0.617478 | 1_3:+7007882 | Msa0100540:CDS |
| GACCATGGGCATTTGTACAG+TGG | 0.619885 | 1_3:+7009010 | Msa0100540:CDS |
| CTTTCCGGAACACCAGGTGG+TGG | 0.623026 | 1_3:-7011359 | None:intergenic |
| AGAACCTGATCCATTCCAGA+AGG | 0.629291 | 1_3:-7007984 | None:intergenic |
| TGATCCATTCCAGAAGGCAA+AGG | 0.638296 | 1_3:-7007978 | None:intergenic |
| AGCCACTGTACAAATGCCCA+TGG | 0.640117 | 1_3:-7009012 | None:intergenic |
| GATGACAATTCTGGTATGGG+TGG | 0.644898 | 1_3:+7007885 | Msa0100540:CDS |
| GAAGTTGGTGAATTATTAGG+CGG | 0.651672 | 1_3:-7007520 | None:intergenic |
| TGTAGATGACTTTACACCTG+AGG | 0.656696 | 1_3:+7012477 | Msa0100540:three_prime_UTR |
| TGGGTGTGACTATTCCATGA+AGG | 0.657511 | 1_3:+7011148 | Msa0100540:CDS |
| CCAGTTCGGAATATTTGCTG+CGG | 0.659311 | 1_3:-7012347 | None:intergenic |
| TGTTGGTAACATATTACACA+AGG | 0.688104 | 1_3:+7009802 | Msa0100540:CDS |
| TTGTATGAAATAAGTTACCG+AGG | 0.692022 | 1_3:-7012634 | None:intergenic |
| ACATAAGAATTACAGATACA+CGG | 0.703455 | 1_3:-7012457 | None:intergenic |
| ACACTTTCCGGAACACCAGG+TGG | 0.723361 | 1_3:-7011362 | None:intergenic |
| GCTGAGAAAGTACTACCCTG+AGG | 0.760751 | 1_3:+7009265 | Msa0100540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAGAATTTAATAATAGAT+CGG | - | chr1_3:7011176-7011195 | None:intergenic | 10.0% |
| !! | AACAAAACAAATTTCAAAAA+TGG | + | chr1_3:7007581-7007600 | Msa0100540:exon | 15.0% |
| !! | ACAAAACAAATTTCAAAAAT+GGG | + | chr1_3:7007582-7007601 | Msa0100540:exon | 15.0% |
| !!! | TTTTGAAAGTTCATTAATTT+TGG | + | chr1_3:7008873-7008892 | Msa0100540:intron | 15.0% |
| !!! | TTTGAAAGTTCATTAATTTT+GGG | + | chr1_3:7008874-7008893 | Msa0100540:intron | 15.0% |
| !!! | TTAAATTCATTTTCTATTCT+AGG | + | chr1_3:7009076-7009095 | Msa0100540:intron | 15.0% |
| !! | ATTCTGATAATTATGATTTA+TGG | + | chr1_3:7009365-7009384 | Msa0100540:intron | 15.0% |
| !! | TTATAATTTAAGTCAAATGA+CGG | + | chr1_3:7009485-7009504 | Msa0100540:intron | 15.0% |
| !!! | TTTAATTTTGCAAAAATGAT+AGG | + | chr1_3:7009562-7009581 | Msa0100540:intron | 15.0% |
| !! | TGAAAGTTAAAAAAATGTAT+TGG | + | chr1_3:7011669-7011688 | Msa0100540:intron | 15.0% |
| !! | GAAAGTTAAAAAAATGTATT+GGG | + | chr1_3:7011670-7011689 | Msa0100540:intron | 15.0% |
| !! | AAAGTTAAAAAAATGTATTG+GGG | + | chr1_3:7011671-7011690 | Msa0100540:intron | 15.0% |
| !!! | ATGATTTGTTTATAAACAAT+CGG | - | chr1_3:7012167-7012186 | None:intergenic | 15.0% |
| !!! | TTATGTCTAATTTTACAATT+TGG | + | chr1_3:7012282-7012301 | Msa0100540:intron | 15.0% |
| !!! | GTTGATTTGTATAAATGATT+CGG | + | chr1_3:7008058-7008077 | Msa0100540:intron | 20.0% |
| !! | TTTAAATTGAGAAATGTTAG+TGG | + | chr1_3:7008322-7008341 | Msa0100540:intron | 20.0% |
| !! | CCAAAAAAAATTACAAACTA+CGG | - | chr1_3:7008537-7008556 | None:intergenic | 20.0% |
| !!! | ATCAGTTTATTCTTTGAAAT+TGG | + | chr1_3:7008807-7008826 | Msa0100540:intron | 20.0% |
| !! | TATTAATGTATGTTCCTTTA+TGG | + | chr1_3:7008965-7008984 | Msa0100540:intron | 20.0% |
| !! | GCAATGAAGAATTATATTTA+AGG | + | chr1_3:7009976-7009995 | Msa0100540:intron | 20.0% |
| !! | AAACAAATCTAACACTTTAA+AGG | + | chr1_3:7010308-7010327 | Msa0100540:intron | 20.0% |
| !! | TCATAGAAAAGTTAAAAGAA+AGG | + | chr1_3:7010557-7010576 | Msa0100540:intron | 20.0% |
| !!! | AATATCCAGATAATTTGTAT+GGG | - | chr1_3:7010626-7010645 | None:intergenic | 20.0% |
| !!! | TAATATCCAGATAATTTGTA+TGG | - | chr1_3:7010627-7010646 | None:intergenic | 20.0% |
| !!! | ATTATTTGTTTTTCCTGAAT+AGG | + | chr1_3:7012125-7012144 | Msa0100540:intron | 20.0% |
| !!! | AATATTTCAATATGGTGTTT+TGG | - | chr1_3:7012555-7012574 | None:intergenic | 20.0% |
| !!! | TTTTATTGATTGTTGTAGTT+AGG | + | chr1_3:7012584-7012603 | Msa0100540:three_prime_UTR | 20.0% |
| !!! | TTTATTGATTGTTGTAGTTA+GGG | + | chr1_3:7012585-7012604 | Msa0100540:three_prime_UTR | 20.0% |
| ! | ATGTTACTGAGAATGTTATT+AGG | - | chr1_3:7007632-7007651 | None:intergenic | 25.0% |
| ! | AGTGTAGAGTTATGTATTAT+TGG | + | chr1_3:7007838-7007857 | Msa0100540:CDS | 25.0% |
| !!! | TTATTGGTTTAAGAAGATGA+AGG | + | chr1_3:7007854-7007873 | Msa0100540:CDS | 25.0% |
| !! | TGTAGTACTATACTTGATTT+TGG | + | chr1_3:7008244-7008263 | Msa0100540:intron | 25.0% |
| !!! | AAAGATGGTATTTTTGTGAT+TGG | + | chr1_3:7008269-7008288 | Msa0100540:intron | 25.0% |
| !!! | AAGATGGTATTTTTGTGATT+GGG | + | chr1_3:7008270-7008289 | Msa0100540:intron | 25.0% |
| ! | TAGTTGAGTTTGAATGATTT+AGG | + | chr1_3:7008364-7008383 | Msa0100540:intron | 25.0% |
| ! | TTGAAATCACTACTGTTATT+TGG | + | chr1_3:7008451-7008470 | Msa0100540:intron | 25.0% |
| !!! | CCGTAGTTTGTAATTTTTTT+TGG | + | chr1_3:7008534-7008553 | Msa0100540:intron | 25.0% |
| ! | ACAGTCTGATTTCAATAAAA+CGG | + | chr1_3:7008648-7008667 | Msa0100540:intron | 25.0% |
| !! | TTGATTACATTAGTCCTTTT+GGG | + | chr1_3:7008781-7008800 | Msa0100540:intron | 25.0% |
| !!! | CATTTTCTATTCTAGGATTT+TGG | + | chr1_3:7009083-7009102 | Msa0100540:intron | 25.0% |
| ! | ATTTCCAATTGGATCTATAT+TGG | - | chr1_3:7009306-7009325 | None:intergenic | 25.0% |
| !! | ACAGTGTAGAACTTTTTATA+CGG | - | chr1_3:7009422-7009441 | None:intergenic | 25.0% |
| ! | GTGTGTGAATTAAATACTTA+TGG | + | chr1_3:7009509-7009528 | Msa0100540:intron | 25.0% |
| !! | ATAAAAATCAAGTTGTTGTG+AGG | - | chr1_3:7009726-7009745 | None:intergenic | 25.0% |
| !!! | TTATTTTGTATCGTTGATAC+AGG | + | chr1_3:7009747-7009766 | Msa0100540:intron | 25.0% |
| ! | ACTTATCAATAAAAAGCGAT+AGG | - | chr1_3:7009944-7009963 | None:intergenic | 25.0% |
| !! | ATTTGAAATCCTTGACTAAA+TGG | - | chr1_3:7010072-7010091 | None:intergenic | 25.0% |
| ! | ACTTGATATACTAACACTTA+AGG | - | chr1_3:7010107-7010126 | None:intergenic | 25.0% |
| ! | ATTATGAACTCTTCTAAACA+AGG | - | chr1_3:7010168-7010187 | None:intergenic | 25.0% |
| ! | AAAAAATGAGTCATGCTATA+TGG | + | chr1_3:7010223-7010242 | Msa0100540:intron | 25.0% |
| ! | TATTTCCCATACAAATTATC+TGG | + | chr1_3:7010618-7010637 | Msa0100540:intron | 25.0% |
| ! | ACGATATGATTTGATAAGAT+TGG | - | chr1_3:7010687-7010706 | None:intergenic | 25.0% |
| ! | TCAAATCATATCGTGTAAAT+AGG | + | chr1_3:7010693-7010712 | Msa0100540:intron | 25.0% |
| ! | CAAATCATATCGTGTAAATA+GGG | + | chr1_3:7010694-7010713 | Msa0100540:intron | 25.0% |
| ! | AGCAAATGAGAATTAAACAT+GGG | - | chr1_3:7010964-7010983 | None:intergenic | 25.0% |
| ! | AAGCAAATGAGAATTAAACA+TGG | - | chr1_3:7010965-7010984 | None:intergenic | 25.0% |
| !! | TTTTAGTACAATGTTGGAAA+TGG | - | chr1_3:7010989-7011008 | None:intergenic | 25.0% |
| ! | CAACATTGTACTAAAAAACA+CGG | + | chr1_3:7010993-7011012 | Msa0100540:intron | 25.0% |
| ! | TTCATAATTCACTACACTTA+TGG | + | chr1_3:7011128-7011147 | Msa0100540:CDS | 25.0% |
| ! | TCATAATTCACTACACTTAT+GGG | + | chr1_3:7011129-7011148 | Msa0100540:CDS | 25.0% |
| ! | TTAAAAAAATGTATTGGGGA+GGG | + | chr1_3:7011675-7011694 | Msa0100540:intron | 25.0% |
| ! | TCGAAAAAGCAAAAACAAAA+AGG | + | chr1_3:7011853-7011872 | Msa0100540:intron | 25.0% |
| !!! | AGAACAGTTTTTCTTTAAGA+GGG | - | chr1_3:7012017-7012036 | None:intergenic | 25.0% |
| ! | TTAGATGACCTTAAAATCAA+GGG | - | chr1_3:7012090-7012109 | None:intergenic | 25.0% |
| ! | ATTAGATGACCTTAAAATCA+AGG | - | chr1_3:7012091-7012110 | None:intergenic | 25.0% |
| !!! | TCTTCTTGTTTTGAATGTTT+GGG | + | chr1_3:7012242-7012261 | Msa0100540:intron | 25.0% |
| ! | ACATAAGAATTACAGATACA+CGG | - | chr1_3:7012460-7012479 | None:intergenic | 25.0% |
| !!! | ACATGAATTTTTTCAATGCT+TGG | + | chr1_3:7012503-7012522 | Msa0100540:three_prime_UTR | 25.0% |
| !! | TATCTAGTTGGTGTTGAAAA+AGG | - | chr1_3:7007474-7007493 | None:intergenic | 30.0% |
| !! | GAAGAAGTTGGTGAATTATT+AGG | - | chr1_3:7007526-7007545 | None:intergenic | 30.0% |
| !! | CAAATTTCAAAAATGGGTTG+TGG | + | chr1_3:7007588-7007607 | Msa0100540:exon | 30.0% |
| ACATACAACATCATTATCTC+AGG | + | chr1_3:7007657-7007676 | Msa0100540:CDS | 30.0% | |
| ! | TTTATTGATGGTTTACGTGA+AGG | - | chr1_3:7007714-7007733 | None:intergenic | 30.0% |
| !!! | GAAGCACTTTTTCTATTAAG+TGG | - | chr1_3:7007759-7007778 | None:intergenic | 30.0% |
| CTGATTCTGTTTACAATACA+TGG | + | chr1_3:7007814-7007833 | Msa0100540:CDS | 30.0% | |
| TTTAAGAAGATGAAGGAAAG+TGG | + | chr1_3:7007861-7007880 | Msa0100540:CDS | 30.0% | |
| ! | TTTACTAGGATTTTGCATTC+TGG | + | chr1_3:7007909-7007928 | Msa0100540:CDS | 30.0% |
| TGGTAAAACTGATCAGTATA+TGG | + | chr1_3:7007929-7007948 | Msa0100540:CDS | 30.0% | |
| TACTTGATCTTGGTGAAAAA+TGG | + | chr1_3:7008087-7008106 | Msa0100540:intron | 30.0% | |
| TCAAACTCAACTATCAACTA+TGG | - | chr1_3:7008166-7008185 | None:intergenic | 30.0% | |
| TAGTTGAGTTTGAGTGATTT+AGG | + | chr1_3:7008173-7008192 | Msa0100540:intron | 30.0% | |
| !! | TACTTGATTTTGGAGAAAGA+TGG | + | chr1_3:7008254-7008273 | Msa0100540:intron | 30.0% |
| TCAAACTCAACTATCAACTT+TGG | - | chr1_3:7008357-7008376 | None:intergenic | 30.0% | |
| ! | TCACTACTGTTATTTGGAAA+TGG | + | chr1_3:7008457-7008476 | Msa0100540:intron | 30.0% |
| GCAATCACTATTTGACTATA+AGG | - | chr1_3:7008486-7008505 | None:intergenic | 30.0% | |
| TATAGTCAAATAGTGATTGC+AGG | + | chr1_3:7008486-7008505 | Msa0100540:intron | 30.0% | |
| !! | GTTTTATTGAAATCAGACTG+TGG | - | chr1_3:7008649-7008668 | None:intergenic | 30.0% |
| TAATTTAGTCCCTAAAACAG+TGG | + | chr1_3:7008695-7008714 | Msa0100540:intron | 30.0% | |
| ! | CTTGATTACATTAGTCCTTT+TGG | + | chr1_3:7008780-7008799 | Msa0100540:intron | 30.0% |
| !! | TTTATTCTTTGAAATTGGCG+CGG | + | chr1_3:7008812-7008831 | Msa0100540:intron | 30.0% |
| !! | AATTTTGTCCTCAAGTTGTA+GGG | - | chr1_3:7008915-7008934 | None:intergenic | 30.0% |
| TAGGCTCGATATAAAAGAAA+GGG | - | chr1_3:7009229-7009248 | None:intergenic | 30.0% | |
| TTAGGCTCGATATAAAAGAA+AGG | - | chr1_3:7009230-7009249 | None:intergenic | 30.0% | |
| AGCACTTTCTCATATTTCTT+AGG | - | chr1_3:7009248-7009267 | None:intergenic | 30.0% | |
| ! | ATTGGATCTATATTGGTTAC+AGG | - | chr1_3:7009299-7009318 | None:intergenic | 30.0% |
| GTAACCAATATAGATCCAAT+TGG | + | chr1_3:7009299-7009318 | Msa0100540:CDS | 30.0% | |
| ATTACAGGTGAATTTCCAAT+TGG | - | chr1_3:7009317-7009336 | None:intergenic | 30.0% | |
| !! | TACTTCTAAAATCACACGTA+TGG | - | chr1_3:7009464-7009483 | None:intergenic | 30.0% |
| !! | TGTTGGTAACATATTACACA+AGG | + | chr1_3:7009802-7009821 | Msa0100540:CDS | 30.0% |
| !! | TTCATGATTCAGGTTGAATA+AGG | + | chr1_3:7009827-7009846 | Msa0100540:intron | 30.0% |
| AAGTGTTAGTATATCAAGTG+TGG | + | chr1_3:7010108-7010127 | Msa0100540:intron | 30.0% | |
| ACTTTAACCACAACAAGTAT+TGG | + | chr1_3:7010352-7010371 | Msa0100540:intron | 30.0% | |
| GATTTGATAAGATTGGAAAC+TGG | - | chr1_3:7010680-7010699 | None:intergenic | 30.0% | |
| ! | TCTTCAAACAAGAAGCTTTT+TGG | + | chr1_3:7010849-7010868 | Msa0100540:intron | 30.0% |
| !!! | CGTGTTTTTTAGTACAATGT+TGG | - | chr1_3:7010995-7011014 | None:intergenic | 30.0% |
| TTAAGTCGTTGCTTAATGTA+TGG | + | chr1_3:7011238-7011257 | Msa0100540:intron | 30.0% | |
| ATGTATGGTGTGAAATAATC+AGG | + | chr1_3:7011253-7011272 | Msa0100540:intron | 30.0% | |
| TGTATGGTGTGAAATAATCA+GGG | + | chr1_3:7011254-7011273 | Msa0100540:intron | 30.0% | |
| GAACTGACATATGGAAAAAT+TGG | + | chr1_3:7011278-7011297 | Msa0100540:CDS | 30.0% | |
| CATATGGAAAAATTGGAGAA+TGG | + | chr1_3:7011285-7011304 | Msa0100540:CDS | 30.0% | |
| ! | CAACACACAAAAAAAAGTGT+AGG | - | chr1_3:7011436-7011455 | None:intergenic | 30.0% |
| !!! | CTACACTTTTTTTTGTGTGT+TGG | + | chr1_3:7011434-7011453 | Msa0100540:intron | 30.0% |
| !!! | TGTGTGTTGGTTTTGTTTTT+TGG | + | chr1_3:7011447-7011466 | Msa0100540:intron | 30.0% |
| !!! | GTGTGTTGGTTTTGTTTTTT+GGG | + | chr1_3:7011448-7011467 | Msa0100540:intron | 30.0% |
| GATTTAACTCGATCAGTTTA+AGG | + | chr1_3:7011508-7011527 | Msa0100540:intron | 30.0% | |
| TTTGAGAGTTTAGATCAGAA+AGG | + | chr1_3:7011536-7011555 | Msa0100540:intron | 30.0% | |
| GTTAAAAAAATGTATTGGGG+AGG | + | chr1_3:7011674-7011693 | Msa0100540:intron | 30.0% | |
| !! | TTTTTCGAAAACTCAGTATC+CGG | - | chr1_3:7011841-7011860 | None:intergenic | 30.0% |
| AAAGCAAAAACAAAAAGGTG+AGG | + | chr1_3:7011858-7011877 | Msa0100540:intron | 30.0% | |
| AAGCAAAAACAAAAAGGTGA+GGG | + | chr1_3:7011859-7011878 | Msa0100540:intron | 30.0% | |
| TGACTTTACTCAAATTGGTT+GGG | - | chr1_3:7011951-7011970 | None:intergenic | 30.0% | |
| ATGACTTTACTCAAATTGGT+TGG | - | chr1_3:7011952-7011971 | None:intergenic | 30.0% | |
| AACCAATTTGAGTAAAGTCA+TGG | + | chr1_3:7011951-7011970 | Msa0100540:intron | 30.0% | |
| ATCCATGACTTTACTCAAAT+TGG | - | chr1_3:7011956-7011975 | None:intergenic | 30.0% | |
| ATTTGAGTAAAGTCATGGAT+TGG | + | chr1_3:7011956-7011975 | Msa0100540:intron | 30.0% | |
| TTTGAGTAAAGTCATGGATT+GGG | + | chr1_3:7011957-7011976 | Msa0100540:intron | 30.0% | |
| ! | AAGAGGGTATAAGATAACAA+TGG | - | chr1_3:7012001-7012020 | None:intergenic | 30.0% |
| ! | CAGAACAGTTTTTCTTTAAG+AGG | - | chr1_3:7012018-7012037 | None:intergenic | 30.0% |
| CTCTTAAAGAAAAACTGTTC+TGG | + | chr1_3:7012016-7012035 | Msa0100540:intron | 30.0% | |
| AGAAAGACATTCATACTGTT+TGG | + | chr1_3:7012048-7012067 | Msa0100540:intron | 30.0% | |
| GAAAGACATTCATACTGTTT+GGG | + | chr1_3:7012049-7012068 | Msa0100540:intron | 30.0% | |
| ! | TTTTCCTGAATAGGAACAAT+TGG | + | chr1_3:7012134-7012153 | Msa0100540:intron | 30.0% |
| !!! | CTCTTCTTGTTTTGAATGTT+TGG | + | chr1_3:7012241-7012260 | Msa0100540:intron | 30.0% |
| ! | TTTTGAATGTTTGGGAGATT+TGG | + | chr1_3:7012250-7012269 | Msa0100540:intron | 30.0% |
| TTTGAATGTTTGGGAGATTT+GGG | + | chr1_3:7012251-7012270 | Msa0100540:intron | 30.0% | |
| !!! | CAATTTGGTTTTCCTTTTCT+AGG | + | chr1_3:7012297-7012316 | Msa0100540:intron | 30.0% |
| AAAAAATTCATGTTTGCCTC+AGG | - | chr1_3:7012496-7012515 | None:intergenic | 30.0% | |
| TTGTATGAAATAAGTTACCG+AGG | - | chr1_3:7012637-7012656 | None:intergenic | 30.0% | |
| ! | GGGCAAAAATTCATGTTTTT+GGG | - | chr1_3:7012697-7012716 | None:intergenic | 30.0% |
| ! | TGGGCAAAAATTCATGTTTT+TGG | - | chr1_3:7012698-7012717 | None:intergenic | 30.0% |
| ! | AATTTTTGCCCACATAAAAG+AGG | + | chr1_3:7012706-7012725 | Msa0100540:three_prime_UTR | 30.0% |
| ! | ACATATTGCCTCTTTTATGT+GGG | - | chr1_3:7012717-7012736 | None:intergenic | 30.0% |
| ! | AACATATTGCCTCTTTTATG+TGG | - | chr1_3:7012718-7012737 | None:intergenic | 30.0% |
| ! | TGGTTCTGTCTATATCTAGT+TGG | - | chr1_3:7007486-7007505 | None:intergenic | 35.0% |
| TATTAGGCGGCTATATGAAA+GGG | - | chr1_3:7007510-7007529 | None:intergenic | 35.0% | |
| TTATTAGGCGGCTATATGAA+AGG | - | chr1_3:7007511-7007530 | None:intergenic | 35.0% | |
| !! | GAAGTTGGTGAATTATTAGG+CGG | - | chr1_3:7007523-7007542 | None:intergenic | 35.0% |
| TCATGTGAAGAAGAAGAAGT+TGG | - | chr1_3:7007538-7007557 | None:intergenic | 35.0% | |
| !! | ACTGGGTCGATTTTTATTGA+TGG | - | chr1_3:7007726-7007745 | None:intergenic | 35.0% |
| TAAGTGGCATCTTGATTACT+GGG | - | chr1_3:7007743-7007762 | None:intergenic | 35.0% | |
| TTAAGTGGCATCTTGATTAC+TGG | - | chr1_3:7007744-7007763 | None:intergenic | 35.0% | |
| AAGGTTGAGCAACAAAAGTA+GGG | - | chr1_3:7007962-7007981 | None:intergenic | 35.0% | |
| AAAGGTTGAGCAACAAAAGT+AGG | - | chr1_3:7007963-7007982 | None:intergenic | 35.0% | |
| CTCACTCACAATATAGTCAA+TGG | - | chr1_3:7008412-7008431 | None:intergenic | 35.0% | |
| ! | CATTGACTATATTGTGAGTG+AGG | + | chr1_3:7008410-7008429 | Msa0100540:intron | 35.0% |
| GTAAACGGTTAAGATAAGCT+TGG | - | chr1_3:7008567-7008586 | None:intergenic | 35.0% | |
| CTTAATGGGATAATAAGGCT+TGG | - | chr1_3:7008598-7008617 | None:intergenic | 35.0% | |
| !! | AGCCTTATTATCCCATTAAG+TGG | + | chr1_3:7008598-7008617 | Msa0100540:intron | 35.0% |
| ! | GCCTTATTATCCCATTAAGT+GGG | + | chr1_3:7008599-7008618 | Msa0100540:intron | 35.0% |
| CCTTATTATCCCATTAAGTG+GGG | + | chr1_3:7008600-7008619 | Msa0100540:intron | 35.0% | |
| ATAAAACGGCCTAACATTCT+TGG | + | chr1_3:7008662-7008681 | Msa0100540:intron | 35.0% | |
| TGATTCACTCCAAGAATGTT+AGG | - | chr1_3:7008674-7008693 | None:intergenic | 35.0% | |
| AATAAACTGATCGACCCAAA+AGG | - | chr1_3:7008798-7008817 | None:intergenic | 35.0% | |
| !! | CAATTTTGTCCTCAAGTTGT+AGG | - | chr1_3:7008916-7008935 | None:intergenic | 35.0% |
| AATGTATGTTCCTTTATGGC+AGG | + | chr1_3:7008969-7008988 | Msa0100540:intron | 35.0% | |
| ATGTATGTTCCTTTATGGCA+GGG | + | chr1_3:7008970-7008989 | Msa0100540:intron | 35.0% | |
| ACATTGTCCTTAATAGACCA+TGG | + | chr1_3:7008995-7009014 | Msa0100540:CDS | 35.0% | |
| CATTGTCCTTAATAGACCAT+GGG | + | chr1_3:7008996-7009015 | Msa0100540:CDS | 35.0% | |
| GGTTTCACAATGATATGATC+TGG | - | chr1_3:7009167-7009186 | None:intergenic | 35.0% | |
| GGAAATTCACCTGTAATTGT+TGG | + | chr1_3:7009320-7009339 | Msa0100540:CDS | 35.0% | |
| ! | TCTAAAATCACACGTATGGT+TGG | - | chr1_3:7009460-7009479 | None:intergenic | 35.0% |
| TGTTGGAGCAATCTTCTTAA+GGG | - | chr1_3:7009591-7009610 | None:intergenic | 35.0% | |
| ATGTTGGAGCAATCTTCTTA+AGG | - | chr1_3:7009592-7009611 | None:intergenic | 35.0% | |
| TTAAGAAGATTGCTCCAACA+TGG | + | chr1_3:7009591-7009610 | Msa0100540:CDS | 35.0% | |
| AAGGAAACATTCATCCATGT+TGG | - | chr1_3:7009608-7009627 | None:intergenic | 35.0% | |
| AACATGGATGAATGTTTCCT+TGG | + | chr1_3:7009607-7009626 | Msa0100540:CDS | 35.0% | |
| ! | AAACCGATAAAGCTTTTGGA+TGG | + | chr1_3:7009648-7009667 | Msa0100540:CDS | 35.0% |
| ! | AACCGATAAAGCTTTTGGAT+GGG | + | chr1_3:7009649-7009668 | Msa0100540:CDS | 35.0% |
| GTGTTATCAAGGTTCTCATA+TGG | + | chr1_3:7009882-7009901 | Msa0100540:intron | 35.0% | |
| AAGCGATAGGTAGAAATCAA+TGG | - | chr1_3:7009931-7009950 | None:intergenic | 35.0% | |
| ACTGCAAATCACTCATGTTT+GGG | - | chr1_3:7010463-7010482 | None:intergenic | 35.0% | |
| AGCGGAAGACTCTTTATATA+GGG | - | chr1_3:7010757-7010776 | None:intergenic | 35.0% | |
| GAAAAAACGAGAGAGATATG+TGG | - | chr1_3:7010805-7010824 | None:intergenic | 35.0% | |
| !! | CTTTTTGGTCCTGTTACTAT+AGG | + | chr1_3:7010864-7010883 | Msa0100540:intron | 35.0% |
| ATAATAGATCGGTACCTTCA+TGG | - | chr1_3:7011165-7011184 | None:intergenic | 35.0% | |
| ATGGAAAAATTGGAGAATGG+AGG | + | chr1_3:7011288-7011307 | Msa0100540:CDS | 35.0% | |
| ATGAAACATACCACACTTTC+CGG | - | chr1_3:7011377-7011396 | None:intergenic | 35.0% | |
| !!! | TGTTGGTTTTGTTTTTTGGG+AGG | + | chr1_3:7011451-7011470 | Msa0100540:intron | 35.0% |
| !!! | GTTGGTTTTGTTTTTTGGGA+GGG | + | chr1_3:7011452-7011471 | Msa0100540:intron | 35.0% |
| !!! | TTGGTTTTGTTTTTTGGGAG+GGG | + | chr1_3:7011453-7011472 | Msa0100540:intron | 35.0% |
| AGAGTTTAGATCAGAAAGGA+GGG | + | chr1_3:7011540-7011559 | Msa0100540:intron | 35.0% | |
| GTTATGAGGATAAAGACTAG+AGG | + | chr1_3:7011566-7011585 | Msa0100540:intron | 35.0% | |
| AGGATAAAGACTAGAGGATA+GGG | + | chr1_3:7011572-7011591 | Msa0100540:intron | 35.0% | |
| TCTACGTATTATAGAGAGAG+AGG | - | chr1_3:7011721-7011740 | None:intergenic | 35.0% | |
| ! | GATTGGTCATACAGATTAGT+TGG | + | chr1_3:7011807-7011826 | Msa0100540:intron | 35.0% |
| ! | CTATGGATCCCTTGATTTTA+AGG | + | chr1_3:7012079-7012098 | Msa0100540:intron | 35.0% |
| TCAAAACAAGAAGAGCTTGA+AGG | - | chr1_3:7012236-7012255 | None:intergenic | 35.0% | |
| TGCTTGGTAAAAATGTGTTG+TGG | + | chr1_3:7012519-7012538 | Msa0100540:three_prime_UTR | 35.0% | |
| GACGAGTTTACGTTCAAATT+TGG | + | chr1_3:7012609-7012628 | Msa0100540:three_prime_UTR | 35.0% | |
| TACGTTCAAATTTGGTACCT+CGG | + | chr1_3:7012617-7012636 | Msa0100540:three_prime_UTR | 35.0% | |
| CCAGGAAAATCTTGTCTCAA+AGG | - | chr1_3:7007690-7007709 | None:intergenic | 40.0% | |
| !!! | CCTTTGAGACAAGATTTTCC+TGG | + | chr1_3:7007687-7007706 | Msa0100540:CDS | 40.0% |
| ! | GAAAGTGGTGATGACAATTC+TGG | + | chr1_3:7007876-7007895 | Msa0100540:CDS | 40.0% |
| ! | TGGTGATGACAATTCTGGTA+TGG | + | chr1_3:7007881-7007900 | Msa0100540:CDS | 40.0% |
| GGTGATGACAATTCTGGTAT+GGG | + | chr1_3:7007882-7007901 | Msa0100540:CDS | 40.0% | |
| ! | TCGGAAAGTGTACTTGATCT+TGG | + | chr1_3:7008077-7008096 | Msa0100540:intron | 40.0% |
| GACTATATTGTGAGTGAGGT+AGG | + | chr1_3:7008414-7008433 | Msa0100540:intron | 40.0% | |
| AGTGAGGTAGGTAGATTGTT+AGG | + | chr1_3:7008426-7008445 | Msa0100540:intron | 40.0% | |
| GTGAGGTAGGTAGATTGTTA+GGG | + | chr1_3:7008427-7008446 | Msa0100540:intron | 40.0% | |
| GGCTTGGATGTTGTTGTAAA+CGG | - | chr1_3:7008582-7008601 | None:intergenic | 40.0% | |
| CCCCACTTAATGGGATAATA+AGG | - | chr1_3:7008603-7008622 | None:intergenic | 40.0% | |
| ATTATCCCATTAAGTGGGGT+CGG | + | chr1_3:7008604-7008623 | Msa0100540:intron | 40.0% | |
| TCCCTAAAACAGTGGATATC+AGG | + | chr1_3:7008703-7008722 | Msa0100540:intron | 40.0% | |
| ! | GCCTGATATCCACTGTTTTA+GGG | - | chr1_3:7008707-7008726 | None:intergenic | 40.0% |
| ! | TGCCTGATATCCACTGTTTT+AGG | - | chr1_3:7008708-7008727 | None:intergenic | 40.0% |
| CGGAGGAACTAATTTGATTG+AGG | + | chr1_3:7008832-7008851 | Msa0100540:intron | 40.0% | |
| AGTTGTAGGGTAGGTCAAAT+TGG | - | chr1_3:7008902-7008921 | None:intergenic | 40.0% | |
| ACAATGTAACCCTGCCATAA+AGG | - | chr1_3:7008982-7009001 | None:intergenic | 40.0% | |
| CAAATGCCCATGGTCTATTA+AGG | - | chr1_3:7009005-7009024 | None:intergenic | 40.0% | |
| ATTCCATCTCTGGCTAAGTT+GGG | - | chr1_3:7009194-7009213 | None:intergenic | 40.0% | |
| AACTTAGCCAGAGATGGAAT+GGG | + | chr1_3:7009194-7009213 | Msa0100540:CDS | 40.0% | |
| TTCACCTGTAATTGTTGGCA+AGG | + | chr1_3:7009325-7009344 | Msa0100540:CDS | 40.0% | |
| GATACCTTGCCAACAATTAC+AGG | - | chr1_3:7009332-7009351 | None:intergenic | 40.0% | |
| TGTTTCCTTGGCAATGAAGA+AGG | + | chr1_3:7009619-7009638 | Msa0100540:CDS | 40.0% | |
| !! | CCAAAAGCTTTATCGGTTTC+AGG | - | chr1_3:7009647-7009666 | None:intergenic | 40.0% |
| ! | CCTGAAACCGATAAAGCTTT+TGG | + | chr1_3:7009644-7009663 | Msa0100540:CDS | 40.0% |
| ! | CACCCATCCAAAAGCTTTAT+CGG | - | chr1_3:7009654-7009673 | None:intergenic | 40.0% |
| AAGTTGTTGTGAGGCTAAGA+AGG | - | chr1_3:7009717-7009736 | None:intergenic | 40.0% | |
| ACACAAGGACTTCATGATTC+AGG | + | chr1_3:7009817-7009836 | Msa0100540:CDS | 40.0% | |
| TACTGTCGTGTGTGTTATCA+AGG | + | chr1_3:7009871-7009890 | Msa0100540:intron | 40.0% | |
| ACACGACTTCAAGTAAAGCA+CGG | + | chr1_3:7010027-7010046 | Msa0100540:intron | 40.0% | |
| GGATTTCAAATGTCCTGCAT+AGG | + | chr1_3:7010081-7010100 | Msa0100540:intron | 40.0% | |
| AGTATATCAAGTGTGGTGAG+TGG | + | chr1_3:7010130-7010149 | Msa0100540:intron | 40.0% | |
| ! | CAACTGTCCAATACTTGTTG+TGG | - | chr1_3:7010362-7010381 | None:intergenic | 40.0% |
| CACTGCAAATCACTCATGTT+TGG | - | chr1_3:7010464-7010483 | None:intergenic | 40.0% | |
| ! | CAAACATGAGTGATTTGCAG+TGG | + | chr1_3:7010462-7010481 | Msa0100540:intron | 40.0% |
| GTGACATCTCATCAACAAAG+CGG | + | chr1_3:7010505-7010524 | Msa0100540:intron | 40.0% | |
| GCGGAAGACTCTTTATATAG+GGG | - | chr1_3:7010756-7010775 | None:intergenic | 40.0% | |
| CAGCGGAAGACTCTTTATAT+AGG | - | chr1_3:7010758-7010777 | None:intergenic | 40.0% | |
| GTGTGTTATGAACTACACAG+CGG | - | chr1_3:7010775-7010794 | None:intergenic | 40.0% | |
| TACGCGATTCCTATAGTAAC+AGG | - | chr1_3:7010876-7010895 | None:intergenic | 40.0% | |
| ATTATGTATGTCAGCCACCA+TGG | + | chr1_3:7011084-7011103 | Msa0100540:intron | 40.0% | |
| TTATGTATGTCAGCCACCAT+GGG | + | chr1_3:7011085-7011104 | Msa0100540:intron | 40.0% | |
| AATCAGGGTGAACTGACATA+TGG | + | chr1_3:7011269-7011288 | Msa0100540:intron | 40.0% | |
| !!! | GGTGGCAATGTCAGATTTTT+TGG | - | chr1_3:7011344-7011363 | None:intergenic | 40.0% |
| AAGTAACCACACTAACACGA+AGG | - | chr1_3:7011403-7011422 | None:intergenic | 40.0% | |
| !!! | TGGTTTTGTTTTTTGGGAGG+GGG | + | chr1_3:7011454-7011473 | Msa0100540:intron | 40.0% |
| GAGAGTTTAGATCAGAAAGG+AGG | + | chr1_3:7011539-7011558 | Msa0100540:intron | 40.0% | |
| GAGTTTAGATCAGAAAGGAG+GGG | + | chr1_3:7011541-7011560 | Msa0100540:intron | 40.0% | |
| AGTTTAGATCAGAAAGGAGG+GGG | + | chr1_3:7011542-7011561 | Msa0100540:intron | 40.0% | |
| GAGGATAAAGACTAGAGGAT+AGG | + | chr1_3:7011571-7011590 | Msa0100540:intron | 40.0% | |
| TAAAGACTAGAGGATAGGGA+AGG | + | chr1_3:7011576-7011595 | Msa0100540:intron | 40.0% | |
| TAGAGGATAGGGAAGGATAA+TGG | + | chr1_3:7011583-7011602 | Msa0100540:intron | 40.0% | |
| CAATCTCAAAATCCACTTGC+AGG | - | chr1_3:7011792-7011811 | None:intergenic | 40.0% | |
| !!! | CTGCAAGTGGATTTTGAGAT+TGG | + | chr1_3:7011790-7011809 | Msa0100540:intron | 40.0% |
| ! | AGATTAGTTGGTCCTTGAAC+CGG | + | chr1_3:7011819-7011838 | Msa0100540:intron | 40.0% |
| AAAACTCAGTATCCGGTTCA+AGG | - | chr1_3:7011834-7011853 | None:intergenic | 40.0% | |
| TTGTGCTAGGAGGAACAAAA+GGG | - | chr1_3:7011893-7011912 | None:intergenic | 40.0% | |
| TTTGTGCTAGGAGGAACAAA+AGG | - | chr1_3:7011894-7011913 | None:intergenic | 40.0% | |
| !! | TGTGTACTAGTCTTTGTGCT+AGG | - | chr1_3:7011906-7011925 | None:intergenic | 40.0% |
| TTACTCAAATTGGTTGGGCT+CGG | - | chr1_3:7011946-7011965 | None:intergenic | 40.0% | |
| TGAGCCAATTGTTCCTATTC+AGG | - | chr1_3:7012141-7012160 | None:intergenic | 40.0% | |
| TCACTAGAGTCACCTAGAAA+AGG | - | chr1_3:7012312-7012331 | None:intergenic | 40.0% | |
| CTAGGTGACTCTAGTGAAAA+TGG | + | chr1_3:7012315-7012334 | Msa0100540:intron | 40.0% | |
| TATTCCGAACTGGTCATCAT+AGG | + | chr1_3:7012357-7012376 | Msa0100540:CDS | 40.0% | |
| ATTCCGAACTGGTCATCATA+GGG | + | chr1_3:7012358-7012377 | Msa0100540:CDS | 40.0% | |
| TTACAGTGTGATCAGAATGC+AGG | + | chr1_3:7012395-7012414 | Msa0100540:three_prime_UTR | 40.0% | |
| TACAGTGTGATCAGAATGCA+GGG | + | chr1_3:7012396-7012415 | Msa0100540:three_prime_UTR | 40.0% | |
| TGATGCCAATCTGTGACAAA+TGG | - | chr1_3:7012430-7012449 | None:intergenic | 40.0% | |
| TGTAGATGACTTTACACCTG+AGG | + | chr1_3:7012477-7012496 | Msa0100540:three_prime_UTR | 40.0% | |
| GATGACAATTCTGGTATGGG+TGG | + | chr1_3:7007885-7007904 | Msa0100540:CDS | 45.0% | |
| ! | CTGGTATGGGTGGATTTACT+AGG | + | chr1_3:7007895-7007914 | Msa0100540:CDS | 45.0% |
| ! | TCAACCTTTGCCTTCTGGAA+TGG | + | chr1_3:7007974-7007993 | Msa0100540:CDS | 45.0% |
| TGATCCATTCCAGAAGGCAA+AGG | - | chr1_3:7007981-7008000 | None:intergenic | 45.0% | |
| !! | TTTGCCTTCTGGAATGGATC+AGG | + | chr1_3:7007980-7007999 | Msa0100540:CDS | 45.0% |
| AGAACCTGATCCATTCCAGA+AGG | - | chr1_3:7007987-7008006 | None:intergenic | 45.0% | |
| !! | ATTCTTTGAAATTGGCGCGG+AGG | + | chr1_3:7008815-7008834 | Msa0100540:intron | 45.0% |
| TTGACCTACCCTACAACTTG+AGG | + | chr1_3:7008904-7008923 | Msa0100540:intron | 45.0% | |
| ! | TTGTCCTCAAGTTGTAGGGT+AGG | - | chr1_3:7008911-7008930 | None:intergenic | 45.0% |
| ! | TCTCTGGCTAAGTTGGGTAT+AGG | - | chr1_3:7009188-7009207 | None:intergenic | 45.0% |
| ATACCCAACTTAGCCAGAGA+TGG | + | chr1_3:7009188-7009207 | Msa0100540:CDS | 45.0% | |
| CATTCCATCTCTGGCTAAGT+TGG | - | chr1_3:7009195-7009214 | None:intergenic | 45.0% | |
| CAACTTAGCCAGAGATGGAA+TGG | + | chr1_3:7009193-7009212 | Msa0100540:CDS | 45.0% | |
| AAGTACTACCCTGAGGAGAA+CGG | + | chr1_3:7009272-7009291 | Msa0100540:CDS | 45.0% | |
| AGGATCCTTCTTCATTGCCA+AGG | - | chr1_3:7009627-7009646 | None:intergenic | 45.0% | |
| ACCATGAAGAGCAGACGAAA+CGG | - | chr1_3:7009783-7009802 | None:intergenic | 45.0% | |
| CTTGTGCAGCCATTTAGTCA+AGG | + | chr1_3:7010060-7010079 | Msa0100540:intron | 45.0% | |
| CTAACACTTAAGGCCTATGC+AGG | - | chr1_3:7010097-7010116 | None:intergenic | 45.0% | |
| GTCATGAGTATTCGTGTGTG+AGG | - | chr1_3:7010258-7010277 | None:intergenic | 45.0% | |
| CACACACGAATACTCATGAC+AGG | + | chr1_3:7010258-7010277 | Msa0100540:intron | 45.0% | |
| ! | ATGAGTGATTTGCAGTGGCA+AGG | + | chr1_3:7010467-7010486 | Msa0100540:intron | 45.0% |
| ! | TGATTTGCAGTGGCAAGGAA+TGG | + | chr1_3:7010472-7010491 | Msa0100540:intron | 45.0% |
| GATTTGCAGTGGCAAGGAAT+GGG | + | chr1_3:7010473-7010492 | Msa0100540:intron | 45.0% | |
| TTGCCAAGTTCTTTGTCCCA+TGG | - | chr1_3:7011104-7011123 | None:intergenic | 45.0% | |
| TGGGTGTGACTATTCCATGA+AGG | + | chr1_3:7011148-7011167 | Msa0100540:CDS | 45.0% | |
| CATCTTCCTTCGTGTTAGTG+TGG | + | chr1_3:7011394-7011413 | Msa0100540:intron | 45.0% | |
| !!! | GGTTTTGTTTTTTGGGAGGG+GGG | + | chr1_3:7011455-7011474 | Msa0100540:intron | 45.0% |
| !!! | GGTGAGTGTTTTTGGAAGAG+AGG | - | chr1_3:7011771-7011790 | None:intergenic | 45.0% |
| ! | CACTTGCAGGTGAGTGTTTT+TGG | - | chr1_3:7011779-7011798 | None:intergenic | 45.0% |
| CAAAAACACTCACCTGCAAG+TGG | + | chr1_3:7011777-7011796 | Msa0100540:intron | 45.0% | |
| TGTGCTAGGAGGAACAAAAG+GGG | - | chr1_3:7011892-7011911 | None:intergenic | 45.0% | |
| !! | GTACTAGTCTTTGTGCTAGG+AGG | - | chr1_3:7011903-7011922 | None:intergenic | 45.0% |
| TACTCAAATTGGTTGGGCTC+GGG | - | chr1_3:7011945-7011964 | None:intergenic | 45.0% | |
| ACTGTTTGGGAGAGTTGCTA+TGG | + | chr1_3:7012062-7012081 | Msa0100540:intron | 45.0% | |
| AGCTTGAAGGAAACGTGTGA+TGG | - | chr1_3:7012223-7012242 | None:intergenic | 45.0% | |
| ! | CCAGTTCGGAATATTTGCTG+CGG | - | chr1_3:7012350-7012369 | None:intergenic | 45.0% |
| AAGCCCTATGATGACCAGTT+CGG | - | chr1_3:7012364-7012383 | None:intergenic | 45.0% | |
| GTCATCATAGGGCTTTCTAC+AGG | + | chr1_3:7012369-7012388 | Msa0100540:exon | 45.0% | |
| ATCATAGGGCTTTCTACAGG+TGG | + | chr1_3:7012372-7012391 | Msa0100540:exon | 45.0% | |
| !!! | TTTTATATATTTATTTTTTC+TGG | + | chr1_3:7008030-7008049 | Msa0100540:intron | 5.0% |
| !!! | TTTATATATTTATTTTTTCT+GGG | + | chr1_3:7008031-7008050 | Msa0100540:intron | 5.0% |
| !! | TAAAATAAAATATTTCAATA+TGG | - | chr1_3:7012563-7012582 | None:intergenic | 5.0% |
| AGGCGGCTATATGAAAGGGT+TGG | - | chr1_3:7007506-7007525 | None:intergenic | 50.0% | |
| GATGGTTTACGTGAAGGACC+AGG | - | chr1_3:7007708-7007727 | None:intergenic | 50.0% | |
| GTTGCTCAACCTTTGCCTTC+TGG | + | chr1_3:7007969-7007988 | Msa0100540:CDS | 50.0% | |
| TGTAGCCGACCCCACTTAAT+GGG | - | chr1_3:7008612-7008631 | None:intergenic | 50.0% | |
| ATGTAGCCGACCCCACTTAA+TGG | - | chr1_3:7008613-7008632 | None:intergenic | 50.0% | |
| GACCATGGGCATTTGTACAG+TGG | + | chr1_3:7009010-7009029 | Msa0100540:CDS | 50.0% | |
| AGCCACTGTACAAATGCCCA+TGG | - | chr1_3:7009015-7009034 | None:intergenic | 50.0% | |
| !! | GCTGAGAAAGTACTACCCTG+AGG | + | chr1_3:7009265-7009284 | Msa0100540:CDS | 50.0% |
| TTACAGGTCCGTTCTCCTCA+GGG | - | chr1_3:7009283-7009302 | None:intergenic | 50.0% | |
| TCGTCTGCTCTTCATGGTGT+TGG | + | chr1_3:7009785-7009804 | Msa0100540:CDS | 50.0% | |
| GTGGTGAGTGGTGATTCTAG+AGG | + | chr1_3:7010142-7010161 | Msa0100540:intron | 50.0% | |
| CCAAGTTCTTTGTCCCATGG+TGG | - | chr1_3:7011101-7011120 | None:intergenic | 50.0% | |
| CCACCATGGGACAAAGAACT+TGG | + | chr1_3:7011098-7011117 | Msa0100540:CDS | 50.0% | |
| AATCTGACATTGCCACCACC+TGG | + | chr1_3:7011347-7011366 | Msa0100540:CDS | 50.0% | |
| AGAAAGGAGGGGGAGTTATG+AGG | + | chr1_3:7011552-7011571 | Msa0100540:intron | 50.0% | |
| GTGCTAGGAGGAACAAAAGG+GGG | - | chr1_3:7011891-7011910 | None:intergenic | 50.0% | |
| CCGCAGCAAATATTCCGAAC+TGG | + | chr1_3:7012347-7012366 | Msa0100540:CDS | 50.0% | |
| !! | GCGTGCCATTTGTCACAGAT+TGG | + | chr1_3:7012422-7012441 | Msa0100540:three_prime_UTR | 50.0% |
| TGCAGCTCCCATTCCATCTC+TGG | - | chr1_3:7009204-7009223 | None:intergenic | 55.0% | |
| GTTACAGGTCCGTTCTCCTC+AGG | - | chr1_3:7009284-7009303 | None:intergenic | 55.0% | |
| GCCGTTTCGTCTGCTCTTCA+TGG | + | chr1_3:7009779-7009798 | Msa0100540:CDS | 55.0% | |
| ATTGCCACCACCTGGTGTTC+CGG | + | chr1_3:7011355-7011374 | Msa0100540:CDS | 55.0% | |
| ACACTTTCCGGAACACCAGG+TGG | - | chr1_3:7011365-7011384 | None:intergenic | 55.0% | |
| ACCTGGTGTTCCGGAAAGTG+TGG | + | chr1_3:7011364-7011383 | Msa0100540:CDS | 55.0% | |
| ACCACACTTTCCGGAACACC+AGG | - | chr1_3:7011368-7011387 | None:intergenic | 55.0% | |
| !!! | TTTTTGGGAGGGGGGTGTTC+TGG | + | chr1_3:7011463-7011482 | Msa0100540:intron | 55.0% |
| CTAGGAGGAACAAAAGGGGG+AGG | - | chr1_3:7011888-7011907 | None:intergenic | 55.0% | |
| CAAATTGGTTGGGCTCGGGT+TGG | - | chr1_3:7011941-7011960 | None:intergenic | 55.0% | |
| CTTTCCGGAACACCAGGTGG+TGG | - | chr1_3:7011362-7011381 | None:intergenic | 60.0% | |
| !! | ATTGGTTGGGCTCGGGTTGG+TGG | - | chr1_3:7011938-7011957 | None:intergenic | 60.0% |
| !! | TTGGGCTCGGGTTGGTGGCG+GGG | - | chr1_3:7011933-7011952 | None:intergenic | 70.0% |
| !! | GTTGGGCTCGGGTTGGTGGC+GGG | - | chr1_3:7011934-7011953 | None:intergenic | 70.0% |
| !! | GGTTGGGCTCGGGTTGGTGG+CGG | - | chr1_3:7011935-7011954 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 7007436 | 7012755 | 7007436 | ID=Msa0100540;Name=Msa0100540 |
| chr1_3 | mRNA | 7007436 | 7012755 | 7007436 | ID=Msa0100540-mRNA-1;Parent=Msa0100540;Name=Msa0100540-mRNA-1;_AED=0.08;_eAED=0.08;_QI=164|1|1|1|1|1|8|377|360 |
| chr1_3 | exon | 7007436 | 7008001 | 7007436 | ID=Msa0100540-mRNA-1:exon:2691;Parent=Msa0100540-mRNA-1 |
| chr1_3 | exon | 7008991 | 7009058 | 7008991 | ID=Msa0100540-mRNA-1:exon:2692;Parent=Msa0100540-mRNA-1 |
| chr1_3 | exon | 7009145 | 7009346 | 7009145 | ID=Msa0100540-mRNA-1:exon:2693;Parent=Msa0100540-mRNA-1 |
| chr1_3 | exon | 7009584 | 7009681 | 7009584 | ID=Msa0100540-mRNA-1:exon:2694;Parent=Msa0100540-mRNA-1 |
| chr1_3 | exon | 7009769 | 7009838 | 7009769 | ID=Msa0100540-mRNA-1:exon:2695;Parent=Msa0100540-mRNA-1 |
| chr1_3 | exon | 7011098 | 7011169 | 7011098 | ID=Msa0100540-mRNA-1:exon:2696;Parent=Msa0100540-mRNA-1 |
| chr1_3 | exon | 7011275 | 7011385 | 7011275 | ID=Msa0100540-mRNA-1:exon:2697;Parent=Msa0100540-mRNA-1 |
| chr1_3 | exon | 7012319 | 7012755 | 7012319 | ID=Msa0100540-mRNA-1:exon:2698;Parent=Msa0100540-mRNA-1 |
| chr1_3 | five_prime_UTR | 7007436 | 7007599 | 7007436 | ID=Msa0100540-mRNA-1:five_prime_utr;Parent=Msa0100540-mRNA-1 |
| chr1_3 | CDS | 7007600 | 7008001 | 7007600 | ID=Msa0100540-mRNA-1:cds;Parent=Msa0100540-mRNA-1 |
| chr1_3 | CDS | 7008991 | 7009058 | 7008991 | ID=Msa0100540-mRNA-1:cds;Parent=Msa0100540-mRNA-1 |
| chr1_3 | CDS | 7009145 | 7009346 | 7009145 | ID=Msa0100540-mRNA-1:cds;Parent=Msa0100540-mRNA-1 |
| chr1_3 | CDS | 7009584 | 7009681 | 7009584 | ID=Msa0100540-mRNA-1:cds;Parent=Msa0100540-mRNA-1 |
| chr1_3 | CDS | 7009769 | 7009838 | 7009769 | ID=Msa0100540-mRNA-1:cds;Parent=Msa0100540-mRNA-1 |
| chr1_3 | CDS | 7011098 | 7011169 | 7011098 | ID=Msa0100540-mRNA-1:cds;Parent=Msa0100540-mRNA-1 |
| chr1_3 | CDS | 7011275 | 7011385 | 7011275 | ID=Msa0100540-mRNA-1:cds;Parent=Msa0100540-mRNA-1 |
| chr1_3 | CDS | 7012319 | 7012378 | 7012319 | ID=Msa0100540-mRNA-1:cds;Parent=Msa0100540-mRNA-1 |
| chr1_3 | three_prime_UTR | 7012379 | 7012755 | 7012379 | ID=Msa0100540-mRNA-1:three_prime_utr;Parent=Msa0100540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
