AlfalfaGEDB | Msa1465380

M. sativa cultivar zhongmu-4 / Msa1465380

KEGG: K05389
GO: GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006873 GO:0006875 GO:0008150 GO:0008324 GO:0009705 GO:0009987 GO:0010029 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0019725 GO:0022607 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022840 GO:0022841 GO:0022842 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030007 GO:0030322 GO:0031004 GO:0031090 GO:0031224 GO:0031226 GO:0032991 GO:0034220 GO:0042391 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0048580 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0051239 GO:0051259 GO:0051260 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065003 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0090533 GO:0098533 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099094 GO:1900140 GO:1902494 GO:1902495 GO:1904949 GO:1990351 GO:2000026
PFAM: PF07885.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1465380	XP_003610592.2	96.591	352	12	0	1	352	1	352	0.0	689

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1465380	sp\|Q8LBL1\|KCO1_ARATH	57.627	295	125	0	53	347	58	352	1.21e-117	347

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1465380	G7JMW6	96.591	352	12	0	1	352	1	352	0.0	689

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa1465380	0.808954	2.402238e-50	-8.615850e-47
Msa0000220	Msa1465380	0.873066	1.960115e-67	-8.615850e-47
Msa0000610	Msa1465380	0.805984	1.025286e-49	-8.615850e-47
Msa0001040	Msa1465380	0.831170	1.942896e-55	-8.615850e-47
Msa0001510	Msa1465380	0.850561	1.567928e-60	-8.615850e-47
Msa0002690	Msa1465380	0.845509	3.884514e-59	-8.615850e-47
Msa0002700	Msa1465380	0.843301	1.524411e-58	-8.615850e-47
Msa0003340	Msa1465380	0.848222	7.030831e-60	-8.615850e-47
Msa0003370	Msa1465380	0.806608	7.572273e-50	-8.615850e-47
Msa0004180	Msa1465380	0.843203	1.619219e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1465380	MtrunA17_Chr4g0076241	96.591	352	12	0	1	352	1	352	0.0	689
Msa1465380	MtrunA17_Chr5g0446411	56.772	347	146	2	1	347	1	343	1.07e-126	367
Msa1465380	MtrunA17_Chr7g0270761	35.836	293	184	2	55	343	131	423	1.74e-64	211
Msa1465380	MtrunA17_Chr4g0051871	36.462	277	168	4	76	347	140	413	1.21e-61	202
Msa1465380	MtrunA17_Chr5g0443241	32.515	326	190	9	3	313	37	347	9.94e-46	160

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1465380	AT5G55630.2	57.627	295	125	0	53	347	58	352	1.23e-118	347
Msa1465380	AT5G55630.1	57.627	295	125	0	53	347	58	352	1.23e-118	347
Msa1465380	AT4G18160.1	38.571	280	167	3	72	347	151	429	4.51e-60	199
Msa1465380	AT4G01840.1	35.315	286	175	2	72	347	118	403	4.24e-57	191
Msa1465380	AT5G46370.1	36.429	280	165	5	78	347	153	429	6.10e-57	191
Msa1465380	AT1G02510.1	33.216	283	167	3	53	335	17	277	8.58e-46	158
Msa1465380	AT5G46360.1	38.554	166	101	1	183	347	89	254	7.39e-31	118
Msa1465380	AT5G46360.2	38.732	142	86	1	183	323	89	230	8.78e-26	104

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Find 60 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACTGAGCCAAGCAAA+TGG	0.534462	tig0045207:-2117	Msa1465380:intergenic
AAACTAGACTGTGATCAATC+AGG	0.508619	tig0045207:+3477	Msa1465380:CDS
AACATAAGGTACCTGTGCCT+AGG	0.617422	tig0045207:-1593	Msa1465380:intergenic
AAGAAGCAGAATTCAAGTTC+AGG	0.531566	tig0045207:+1544	Msa1465380:CDS
AAGAGCTTCTCGACTGCTGC+CGG	0.529816	tig0045207:+2059	Msa1465380:CDS
AATCTGCAGCAAGAACAGAA+TGG	0.667031	tig0045207:+1477	Msa1465380:CDS
AATTCATGATGTGTATAGTA+AGG	0.483946	tig0045207:-3559	Msa1465380:intergenic
ACAATGACTACTGTTGGATA+TGG	0.435922	tig0045207:+1690	Msa1465380:CDS
ACGATTGGATATACCTGATA+AGG	0.467074	tig0045207:-119	Msa1465380:intergenic
ACGGTCACTACTTTAGGTTA+TGG	0.387375	tig0045207:+2032	Msa1465380:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAATTTGAACAACCTTATC+AGG	+	tig0045207:106-125	Msa1465380:five_prime_UTR	30.0%
AAGTAGTGTAAGAAAACGAT+TGG	-	tig0045207:137-156	Msa1465380:intergenic	30.0%
GAGATTGAGTGTTAAAAAGT+GGG	-	tig0045207:466-485	Msa1465380:intergenic	30.0%
CCATTGAGTAAAATACATGT+GGG	+	tig0045207:486-505	Msa1465380:intron	30.0%
CTTATTGGATGAAATACATG+TGG	-	tig0045207:552-571	Msa1465380:intergenic	30.0%
AAAAAAACTAAGGGTTTGTC+TGG	+	tig0045207:1030-1049	Msa1465380:intron	30.0%
CTTATTTACTTGAACACTTG+TGG	+	tig0045207:1068-1087	Msa1465380:intron	30.0%
TATACATTGTGGAGATAAAG+GGG	-	tig0045207:1514-1533	Msa1465380:intergenic	30.0%
GTTATACATTGTGGAGATAA+AGG	-	tig0045207:1516-1535	Msa1465380:intergenic	30.0%
TCTAACAAGTTACCAAATTG+AGG	+	tig0045207:1620-1639	Msa1465380:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0045207	gene	29	3723	29	ID=Msa1465380;Name=Msa1465380
tig0045207	mRNA	29	3723	29	ID=Msa1465380-mRNA-1;Parent=Msa1465380;Name=Msa1465380-mRNA-1;_AED=0.01;_eAED=0.01;_QI=129\|1\|1\|1\|0.5\|0.33\|3\|184\|352
tig0045207	exon	29	127	29	ID=Msa1465380-mRNA-1:exon:24780;Parent=Msa1465380-mRNA-1
tig0045207	exon	1321	2261	1321	ID=Msa1465380-mRNA-1:exon:24781;Parent=Msa1465380-mRNA-1
tig0045207	exon	3392	3723	3392	ID=Msa1465380-mRNA-1:exon:24782;Parent=Msa1465380-mRNA-1
tig0045207	five_prime_UTR	29	127	29	ID=Msa1465380-mRNA-1:five_prime_utr;Parent=Msa1465380-mRNA-1
tig0045207	five_prime_UTR	1321	1350	1321	ID=Msa1465380-mRNA-1:five_prime_utr;Parent=Msa1465380-mRNA-1
tig0045207	CDS	1351	2261	1351	ID=Msa1465380-mRNA-1:cds;Parent=Msa1465380-mRNA-1
tig0045207	CDS	3392	3539	3392	ID=Msa1465380-mRNA-1:cds;Parent=Msa1465380-mRNA-1
tig0045207	three_prime_UTR	3540	3723	3540	ID=Msa1465380-mRNA-1:three_prime_utr;Parent=Msa1465380-mRNA-1

Gene Sequence

>Msa1465380

ATGGGCAGTGATGAAGCTCAACAGCTATTGCTTTCAGAGTCAAGGGAACATTCTCATCTCAATGAGAAGAGTGACCTTCTTCAGAGAAGAAGACCGCGGCGTGGCGGAACTTCAGAGACAGATATCAATCTGCAGCAAGAACAGAATGGTGTCCTCCAAACCCCTTTATCTCCACAATGTATAACTGATAAACAAGAAGCAGAATTCAAGTTCAGGCTAGTGTTCTTGTGTTTAGCAGCATACCTAGGCACAGGTACCTTATGTTTCTATCTAACAAGTTACCAAATTGAGGGCATAAAAACAAATAATTTTCTTGATGCCCTTTATTTCTGTGTTGTGACAATGACTACTGTTGGATATGGAGATCTTGTTCCAAATAGCACTATAGCAAAACTCCTTGCATGCATTTATGTCTTCACTGGCATGGCTCTCGGTGGCTTAATTCTTAGCAAAGCAGCAGATTACATTGTTGAGAAACAGGAAATATTTCTTGCTGAGTCCATGTGCAAGGCTGAAAATTTTGGTCTACAAGAGGTTGCTAAAGAGCTTGAAACTAAGAAAAGCAAATACAAGTTTGTGCTTGCAGTAGCCACTTTTTTTGTGCTCATGATTGCAGGAACTGTTTTTCTGTATTTTATTGAGAATCTAGATTTTGTGGATGCACTCTATTGTGTTTGTTCCACGGTCACTACTTTAGGTTATGGGGATAAGAGCTTCTCGACTGCTGCCGGTAGGATTTTTGCCGTGTTTTGGATATTGAGCAGCACCATTTGCTTGGCTCAGTCTTTTGCTTATCTTGCTGAACTCTATACTGAAGATAGACAAAGATCACTGGCAAAAATGGTTCTCACCCGAAAATTATCACTAAGTGATCTTGAGGCAGCAGATCTTGATGGAGACAAAGTTGTCAGTGCTGCAGAGTTTGTTGTATACAAGTTGAAGGAAATGGGAAAGATCAACCAAGAAGATATTTCAGCAGTGATGGAGAGTTTTAGAAAACTAGACTGTGATCAATCAGGAACTCTGACTGAAGCTGATATCAGAAATTTTGAATTCTGA

Protein sequence

>Msa1465380

MGSDEAQQLLLSESREHSHLNEKSDLLQRRRPRRGGTSETDINLQQEQNGVLQTPLSPQCITDKQEAEFKFRLVFLCLAAYLGTGTLCFYLTSYQIEGIKTNNFLDALYFCVVTMTTVGYGDLVPNSTIAKLLACIYVFTGMALGGLILSKAADYIVEKQEIFLAESMCKAENFGLQEVAKELETKKSKYKFVLAVATFFVLMIAGTVFLYFIENLDFVDALYCVCSTVTTLGYGDKSFSTAAGRIFAVFWILSSTICLAQSFAYLAELYTEDRQRSLAKMVLTRKLSLSDLEAADLDGDKVVSAAEFVVYKLKEMGKINQEDISAVMESFRKLDCDQSGTLTEADIRNFEF*