AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1465380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1465380 MtrunA17_Chr4g0076241 96.591 352 12 0 1 352 1 352 0.0 689
Msa1465380 MtrunA17_Chr5g0446411 56.772 347 146 2 1 347 1 343 1.07e-126 367
Msa1465380 MtrunA17_Chr7g0270761 35.836 293 184 2 55 343 131 423 1.74e-64 211
Msa1465380 MtrunA17_Chr4g0051871 36.462 277 168 4 76 347 140 413 1.21e-61 202
Msa1465380 MtrunA17_Chr5g0443241 32.515 326 190 9 3 313 37 347 9.94e-46 160
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1465380 AT5G55630.2 57.627 295 125 0 53 347 58 352 1.23e-118 347
Msa1465380 AT5G55630.1 57.627 295 125 0 53 347 58 352 1.23e-118 347
Msa1465380 AT4G18160.1 38.571 280 167 3 72 347 151 429 4.51e-60 199
Msa1465380 AT4G01840.1 35.315 286 175 2 72 347 118 403 4.24e-57 191
Msa1465380 AT5G46370.1 36.429 280 165 5 78 347 153 429 6.10e-57 191
Msa1465380 AT1G02510.1 33.216 283 167 3 53 335 17 277 8.58e-46 158
Msa1465380 AT5G46360.1 38.554 166 101 1 183 347 89 254 7.39e-31 118
Msa1465380 AT5G46360.2 38.732 142 86 1 183 323 89 230 8.78e-26 104

Find 60 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCCACGGTCACTACTTT+AGG 0.301171 tig0045207:+2026 Msa1465380:CDS
GTTATACATTGTGGAGATAA+AGG 0.305350 tig0045207:-1513 Msa1465380:intergenic
GAAATTTGAACAACCTTATC+AGG 0.305862 tig0045207:+106 Msa1465380:five_prime_UTR
ATGTGCAAGGCTGAAAATTT+TGG 0.309852 tig0045207:+1852 Msa1465380:CDS
TGTATACAAGTTGAAGGAAA+TGG 0.323817 tig0045207:+3407 Msa1465380:CDS
CGGTCACTACTTTAGGTTAT+GGG 0.344172 tig0045207:+2033 Msa1465380:CDS
TCACTGCTGAAATATCTTCT+TGG 0.344460 tig0045207:-3440 Msa1465380:intergenic
TTGTCACAACACAGAAATAA+AGG 0.357592 tig0045207:-1671 Msa1465380:intergenic
AGATTACATTGTTGAGAAAC+AGG 0.387285 tig0045207:+1809 Msa1465380:CDS
ACGGTCACTACTTTAGGTTA+TGG 0.387375 tig0045207:+2032 Msa1465380:CDS
TTATACATTGTGGAGATAAA+GGG 0.395633 tig0045207:-1512 Msa1465380:intergenic
ATTGTGGAGATAAAGGGGTT+TGG 0.406546 tig0045207:-1506 Msa1465380:intergenic
GTATACAAGTTGAAGGAAAT+GGG 0.421596 tig0045207:+3408 Msa1465380:CDS
CTTGAGGCAGCAGATCTTGA+TGG 0.425392 tig0045207:+2224 Msa1465380:CDS
GTCTTCACTGGCATGGCTCT+CGG 0.434853 tig0045207:+1762 Msa1465380:CDS
ACAATGACTACTGTTGGATA+TGG 0.435922 tig0045207:+1690 Msa1465380:CDS
GTTTGTTGTATACAAGTTGA+AGG 0.439684 tig0045207:+3401 Msa1465380:CDS
GCATGCATTTATGTCTTCAC+TGG 0.440926 tig0045207:+1750 Msa1465380:CDS
AGCATTAGTAAATAAGTTGA+TGG 0.453687 tig0045207:+1332 Msa1465380:exon
TCTAACAAGTTACCAAATTG+AGG 0.463818 tig0045207:+1620 Msa1465380:CDS
ACGATTGGATATACCTGATA+AGG 0.467074 tig0045207:-119 Msa1465380:intergenic
TGTCACAACACAGAAATAAA+GGG 0.481987 tig0045207:-1670 Msa1465380:intergenic
AATTCATGATGTGTATAGTA+AGG 0.483946 tig0045207:-3559 Msa1465380:intergenic
ATTGAGCAGCACCATTTGCT+TGG 0.490697 tig0045207:+2106 Msa1465380:CDS
AGCTATTGCTTTCAGAGTCA+AGG 0.495133 tig0045207:+1373 Msa1465380:CDS
GTGGAGATAAAGGGGTTTGG+AGG 0.501419 tig0045207:-1503 Msa1465380:intergenic
AAACTAGACTGTGATCAATC+AGG 0.508619 tig0045207:+3477 Msa1465380:CDS
CATTTATGTCTTCACTGGCA+TGG 0.510032 tig0045207:+1755 Msa1465380:CDS
AGAAGATATTTCAGCAGTGA+TGG 0.521751 tig0045207:+3443 Msa1465380:CDS
AAGAGCTTCTCGACTGCTGC+CGG 0.529816 tig0045207:+2059 Msa1465380:CDS
CTAACAAGTTACCAAATTGA+GGG 0.530492 tig0045207:+1621 Msa1465380:CDS
AAGAAGCAGAATTCAAGTTC+AGG 0.531566 tig0045207:+1544 Msa1465380:CDS
AAAAGACTGAGCCAAGCAAA+TGG 0.534462 tig0045207:-2117 Msa1465380:intergenic
GCGGTCTTCTTCTCTGAAGA+AGG 0.536019 tig0045207:-1425 Msa1465380:intergenic
ACTCTATTGTGTTTGTTCCA+CGG 0.539533 tig0045207:+2013 Msa1465380:CDS
TGTTTATCAGTTATACATTG+TGG 0.539721 tig0045207:-1522 Msa1465380:intergenic
TAAGGCAGATGATGTTAAGA+TGG 0.546031 tig0045207:-3541 Msa1465380:intergenic
TTGATGGAGACAAAGTTGTC+AGG 0.546814 tig0045207:+2240 Msa1465380:CDS
GCTATTGCTTTCAGAGTCAA+GGG 0.570375 tig0045207:+1374 Msa1465380:CDS
TCTTGCTGAGTCCATGTGCA+AGG 0.575638 tig0045207:+1839 Msa1465380:CDS
ACTTGTTAGATAGAAACATA+AGG 0.578014 tig0045207:-1607 Msa1465380:intergenic
ATTATCACTAAGTGATCTTG+AGG 0.579141 tig0045207:+2208 Msa1465380:CDS
TATACATTGTGGAGATAAAG+GGG 0.579592 tig0045207:-1511 Msa1465380:intergenic
TGAAGACATAAATGCATGCA+AGG 0.589047 tig0045207:-1746 Msa1465380:intergenic
TTGTGTTTAGCAGCATACCT+AGG 0.589326 tig0045207:+1576 Msa1465380:CDS
GTTGTGACAATGACTACTGT+TGG 0.595895 tig0045207:+1684 Msa1465380:CDS
GGTCACTACTTTAGGTTATG+GGG 0.598779 tig0045207:+2034 Msa1465380:CDS
TGAAGATAGACAAAGATCAC+TGG 0.601013 tig0045207:+2163 Msa1465380:CDS
GCATTAGTAAATAAGTTGAT+GGG 0.601074 tig0045207:+1333 Msa1465380:exon
AACATAAGGTACCTGTGCCT+AGG 0.617422 tig0045207:-1593 Msa1465380:intergenic
AGAAGAAGACCGCGGCGTGG+CGG 0.622978 tig0045207:+1435 Msa1465380:CDS
GCTTCTCGACTGCTGCCGGT+AGG 0.626037 tig0045207:+2063 Msa1465380:CDS
TTAGCAGCATACCTAGGCAC+AGG 0.645513 tig0045207:+1582 Msa1465380:CDS
TTCACTGGCATGGCTCTCGG+TGG 0.647484 tig0045207:+1765 Msa1465380:CDS
TCTGAAGTTCCGCCACGCCG+CGG 0.651177 tig0045207:-1444 Msa1465380:intergenic
AATCTGCAGCAAGAACAGAA+TGG 0.667031 tig0045207:+1477 Msa1465380:CDS
CAGAGAAGAAGACCGCGGCG+TGG 0.691942 tig0045207:+1432 Msa1465380:CDS
GCTGCTCAATATCCAAAACA+CGG 0.699934 tig0045207:-2093 Msa1465380:intergenic
ATAACCTAAAGTAGTGACCG+TGG 0.717695 tig0045207:-2030 Msa1465380:intergenic
TTCTTCAGAGAAGAAGACCG+CGG 0.758085 tig0045207:+1427 Msa1465380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAATAAAATAAAA+TGG + tig0045207:3027-3046 Msa1465380:intron 0.0%
!!! ATTTTTTAATTATTTTTTTT+TGG + tig0045207:3138-3157 Msa1465380:intron 0.0%
!!! TAAAGTAATATTTTACATTT+GGG - tig0045207:2609-2628 Msa1465380:intergenic 10.0%
!!! ATAAAGTAATATTTTACATT+TGG - tig0045207:2610-2629 Msa1465380:intergenic 10.0%
!! ATTAAAAAAATTATTCAATG+CGG + tig0045207:2799-2818 Msa1465380:intron 10.0%
!! ATAAAATGGAAATTAAAATA+AGG + tig0045207:3041-3060 Msa1465380:intron 10.0%
!! AAATATAGAGTAATAGTTAT+AGG - tig0045207:232-251 Msa1465380:intergenic 15.0%
!! AACATTGAATTGAAATTTAA+TGG + tig0045207:286-305 Msa1465380:intron 15.0%
!!! TAGTTTTTTTTTGTAATGTT+CGG - tig0045207:1020-1039 Msa1465380:intergenic 15.0%
!! AACATTACAAAAAAAAACTA+AGG + tig0045207:1020-1039 Msa1465380:intron 15.0%
!! ACATTACAAAAAAAAACTAA+GGG + tig0045207:1021-1040 Msa1465380:intron 15.0%
!! ACATAAGCATTTATATAATA+AGG + tig0045207:1240-1259 Msa1465380:intron 15.0%
!! CATAAGCATTTATATAATAA+GGG + tig0045207:1241-1260 Msa1465380:intron 15.0%
!! TTAAAAAAATTATTCAATGC+GGG + tig0045207:2800-2819 Msa1465380:intron 15.0%
!!! AAGTTTATACTTTTAATGAA+TGG + tig0045207:3660-3679 Msa1465380:three_prime_UTR 15.0%
!!! ATATCGATTGAAATCTTAAA+AGG - tig0045207:169-188 Msa1465380:intergenic 20.0%
!! ATGGTAATTGTAATTGTTAA+TGG + tig0045207:305-324 Msa1465380:intron 20.0%
!!! ATTTATTTGAGTTTAGTTAC+CGG + tig0045207:812-831 Msa1465380:intron 20.0%
!! TTATGAGTGAATTTGTAAAT+TGG - tig0045207:2382-2401 Msa1465380:intergenic 20.0%
!! TAAAAAAATTATTCAATGCG+GGG + tig0045207:2801-2820 Msa1465380:intron 20.0%
!! TTTATTTATATCATTTGCAC+CGG + tig0045207:3248-3267 Msa1465380:intron 20.0%
!! AAAATTGTTGATCAATATTG+AGG - tig0045207:3365-3384 Msa1465380:intergenic 20.0%
! AAAAGATTTAACATCTTGAG+AGG - tig0045207:613-632 Msa1465380:intergenic 25.0%
!! ACTATTTTCATAAGTCATTG+TGG - tig0045207:1162-1181 Msa1465380:intergenic 25.0%
!! AGCATTAGTAAATAAGTTGA+TGG + tig0045207:1332-1351 Msa1465380:exon 25.0%
!!! GCATTAGTAAATAAGTTGAT+GGG + tig0045207:1333-1352 Msa1465380:exon 25.0%
! TTATACATTGTGGAGATAAA+GGG - tig0045207:1515-1534 Msa1465380:intergenic 25.0%
! TGTTTATCAGTTATACATTG+TGG - tig0045207:1525-1544 Msa1465380:intergenic 25.0%
!! ACTTGTTAGATAGAAACATA+AGG - tig0045207:1610-1629 Msa1465380:intergenic 25.0%
!! TATTGAGAATCTAGATTTTG+TGG + tig0045207:1986-2005 Msa1465380:CDS 25.0%
!! ATCACTTAGTGATAATTTTC+GGG - tig0045207:2204-2223 Msa1465380:intergenic 25.0%
!! GATCACTTAGTGATAATTTT+CGG - tig0045207:2205-2224 Msa1465380:intergenic 25.0%
!!! TAATATTTTACATTTGGGAC+GGG - tig0045207:2604-2623 Msa1465380:intergenic 25.0%
!! GTAATATTTTACATTTGGGA+CGG - tig0045207:2605-2624 Msa1465380:intergenic 25.0%
! AAACTACCTTTGATACTTAA+AGG + tig0045207:2675-2694 Msa1465380:intron 25.0%
!!! TGTATTACAATGTTGCTTTT+AGG + tig0045207:2752-2771 Msa1465380:intron 25.0%
!!! GTATTACAATGTTGCTTTTA+GGG + tig0045207:2753-2772 Msa1465380:intron 25.0%
! TTATTTATATCATTTGCACC+GGG + tig0045207:3249-3268 Msa1465380:intron 25.0%
! AATTCATGATGTGTATAGTA+AGG - tig0045207:3562-3581 Msa1465380:intergenic 25.0%
GAAATTTGAACAACCTTATC+AGG + tig0045207:106-125 Msa1465380:five_prime_UTR 30.0%
AAGTAGTGTAAGAAAACGAT+TGG - tig0045207:137-156 Msa1465380:intergenic 30.0%
GAGATTGAGTGTTAAAAAGT+GGG - tig0045207:466-485 Msa1465380:intergenic 30.0%
! CCACATGTATTTTACTCAAT+GGG - tig0045207:488-507 Msa1465380:intergenic 30.0%
CCATTGAGTAAAATACATGT+GGG + tig0045207:486-505 Msa1465380:intron 30.0%
CTTATTGGATGAAATACATG+TGG - tig0045207:552-571 Msa1465380:intergenic 30.0%
! CTTTTCAGTGTCAATTCTTA+CGG + tig0045207:628-647 Msa1465380:intron 30.0%
! TTTTCAGTGTCAATTCTTAC+GGG + tig0045207:629-648 Msa1465380:intron 30.0%
!! TCTTTTGATGACAACAACAA+TGG - tig0045207:933-952 Msa1465380:intergenic 30.0%
AAAAAAACTAAGGGTTTGTC+TGG + tig0045207:1030-1049 Msa1465380:intron 30.0%
CTTATTTACTTGAACACTTG+TGG + tig0045207:1068-1087 Msa1465380:intron 30.0%
! AATTAGTCTGTTTATCCAAC+AGG + tig0045207:1267-1286 Msa1465380:intron 30.0%
! ATTAGTCTGTTTATCCAACA+GGG + tig0045207:1268-1287 Msa1465380:intron 30.0%
! TCTTAGAACTTCAACTTTTC+AGG + tig0045207:1299-1318 Msa1465380:intron 30.0%
TATACATTGTGGAGATAAAG+GGG - tig0045207:1514-1533 Msa1465380:intergenic 30.0%
GTTATACATTGTGGAGATAA+AGG - tig0045207:1516-1535 Msa1465380:intergenic 30.0%
TCTAACAAGTTACCAAATTG+AGG + tig0045207:1620-1639 Msa1465380:CDS 30.0%
CTAACAAGTTACCAAATTGA+GGG + tig0045207:1621-1640 Msa1465380:CDS 30.0%
!!! TTGTTTTTATGCCCTCAATT+TGG - tig0045207:1635-1654 Msa1465380:intergenic 30.0%
TGTCACAACACAGAAATAAA+GGG - tig0045207:1673-1692 Msa1465380:intergenic 30.0%
TTGTCACAACACAGAAATAA+AGG - tig0045207:1674-1693 Msa1465380:intergenic 30.0%
!! AGTTTTGCTATAGTGCTATT+TGG - tig0045207:1726-1745 Msa1465380:intergenic 30.0%
AGATTACATTGTTGAGAAAC+AGG + tig0045207:1809-1828 Msa1465380:CDS 30.0%
!! TGAAAATTTTGGTCTACAAG+AGG + tig0045207:1863-1882 Msa1465380:CDS 30.0%
AATCATGAGCACAAAAAAAG+TGG - tig0045207:1943-1962 Msa1465380:intergenic 30.0%
ATTATCACTAAGTGATCTTG+AGG + tig0045207:2208-2227 Msa1465380:CDS 30.0%
AATCTCTGATTATTGCGAAT+TGG - tig0045207:2330-2349 Msa1465380:intergenic 30.0%
! TTTTCCCCGATTTCAAAATA+CGG + tig0045207:2526-2545 Msa1465380:intron 30.0%
GTAGATCCTTTAAGTATCAA+AGG - tig0045207:2684-2703 Msa1465380:intergenic 30.0%
GCTTAGTGTAGCTAAATTAT+TGG - tig0045207:3334-3353 Msa1465380:intergenic 30.0%
!! GTTTGTTGTATACAAGTTGA+AGG + tig0045207:3401-3420 Msa1465380:CDS 30.0%
! TGTATACAAGTTGAAGGAAA+TGG + tig0045207:3407-3426 Msa1465380:CDS 30.0%
! GTATACAAGTTGAAGGAAAT+GGG + tig0045207:3408-3427 Msa1465380:CDS 30.0%
CTTCTTCTTCTTCTTCTTCA+TGG + tig0045207:68-87 Msa1465380:five_prime_UTR 35.0%
ACGATTGGATATACCTGATA+AGG - tig0045207:122-141 Msa1465380:intergenic 35.0%
!!! TTTTTTCATGAAGAGCTTCG+TGG + tig0045207:364-383 Msa1465380:intron 35.0%
GTGTTAAAAAGTGGGTCTTA+TGG - tig0045207:458-477 Msa1465380:intergenic 35.0%
GGAGATTGAGTGTTAAAAAG+TGG - tig0045207:467-486 Msa1465380:intergenic 35.0%
CCCATTGAGTAAAATACATG+TGG + tig0045207:485-504 Msa1465380:intron 35.0%
! CCCACATGTATTTTACTCAA+TGG - tig0045207:489-508 Msa1465380:intergenic 35.0%
TCATCCAATAAGAGAGTGAA+TGG + tig0045207:560-579 Msa1465380:intron 35.0%
TACACCATTCACTCTCTTAT+TGG - tig0045207:567-586 Msa1465380:intergenic 35.0%
AATAAGAGAGTGAATGGTGT+AGG + tig0045207:566-585 Msa1465380:intron 35.0%
ATAAGAGAGTGAATGGTGTA+GGG + tig0045207:567-586 Msa1465380:intron 35.0%
TTTCAGTGTCAATTCTTACG+GGG + tig0045207:630-649 Msa1465380:intron 35.0%
!! AGTAAGGACTGATTAGTCTT+GGG - tig0045207:720-739 Msa1465380:intergenic 35.0%
AAGACTAATCAGTCCTTACT+GGG + tig0045207:720-739 Msa1465380:intron 35.0%
AAACTACTTATGACATGCCT+GGG + tig0045207:872-891 Msa1465380:intron 35.0%
ATCAACTAAAAACAACTCCC+AGG - tig0045207:892-911 Msa1465380:intergenic 35.0%
!! GTTGAAGTTCTAAGATGCTT+AGG - tig0045207:1294-1313 Msa1465380:intergenic 35.0%
! AAGAAGCAGAATTCAAGTTC+AGG + tig0045207:1544-1563 Msa1465380:CDS 35.0%
ACAATGACTACTGTTGGATA+TGG + tig0045207:1690-1709 Msa1465380:CDS 35.0%
TGAAGACATAAATGCATGCA+AGG - tig0045207:1749-1768 Msa1465380:intergenic 35.0%
! AAAATTTTCAGCCTTGCACA+TGG - tig0045207:1853-1872 Msa1465380:intergenic 35.0%
! ATGTGCAAGGCTGAAAATTT+TGG + tig0045207:1852-1871 Msa1465380:CDS 35.0%
!!! TTTTTTGTGCTCATGATTGC+AGG + tig0045207:1945-1964 Msa1465380:CDS 35.0%
ACTCTATTGTGTTTGTTCCA+CGG + tig0045207:2013-2032 Msa1465380:CDS 35.0%
TGAAGATAGACAAAGATCAC+TGG + tig0045207:2163-2182 Msa1465380:CDS 35.0%
ACAAAGATCACTGGCAAAAA+TGG + tig0045207:2172-2191 Msa1465380:CDS 35.0%
CACTCATAAGTTATGAAGCA+CGG + tig0045207:2393-2412 Msa1465380:intron 35.0%
TTTCCCCGATTTCAAAATAC+GGG + tig0045207:2527-2546 Msa1465380:intron 35.0%
!!! ATACCCGTATTTTGAAATCG+GGG - tig0045207:2533-2552 Msa1465380:intergenic 35.0%
!!! CATACCCGTATTTTGAAATC+GGG - tig0045207:2534-2553 Msa1465380:intergenic 35.0%
!!! CCATACCCGTATTTTGAAAT+CGG - tig0045207:2535-2554 Msa1465380:intergenic 35.0%
CGATTTCAAAATACGGGTAT+GGG + tig0045207:2533-2552 Msa1465380:intron 35.0%
AAAATTATTCAATGCGGGGA+CGG + tig0045207:2805-2824 Msa1465380:intron 35.0%
TCGGGTAAGTATATGAGAAT+CGG + tig0045207:2908-2927 Msa1465380:intron 35.0%
TATCAGATACACGTATCGTT+AGG - tig0045207:2985-3004 Msa1465380:intergenic 35.0%
TAAACAATCACACGTATCTG+AGG + tig0045207:3071-3090 Msa1465380:intron 35.0%
ACTCCTTTGATATGTATCGA+CGG + tig0045207:3163-3182 Msa1465380:intron 35.0%
TCACTGCTGAAATATCTTCT+TGG - tig0045207:3443-3462 Msa1465380:intergenic 35.0%
AGAAGATATTTCAGCAGTGA+TGG + tig0045207:3443-3462 Msa1465380:CDS 35.0%
AAACTAGACTGTGATCAATC+AGG + tig0045207:3477-3496 Msa1465380:CDS 35.0%
TAAGGCAGATGATGTTAAGA+TGG - tig0045207:3544-3563 Msa1465380:intergenic 35.0%
!! CAGTAAGGACTGATTAGTCT+TGG - tig0045207:721-740 Msa1465380:intergenic 40.0%
CAAGACTAATCAGTCCTTAC+TGG + tig0045207:719-738 Msa1465380:intron 40.0%
TCACTCTTTCTTACCCAGTA+AGG - tig0045207:736-755 Msa1465380:intergenic 40.0%
AGGCTGTTTGAGAGAGTTTA+TGG + tig0045207:849-868 Msa1465380:intron 40.0%
GAAACTACTTATGACATGCC+TGG + tig0045207:871-890 Msa1465380:intron 40.0%
AACTAAGGGTTTGTCTGGAT+TGG + tig0045207:1035-1054 Msa1465380:intron 40.0%
TACTTGAACACTTGTGGTCA+TGG + tig0045207:1074-1093 Msa1465380:intron 40.0%
ACTTGAACACTTGTGGTCAT+GGG + tig0045207:1075-1094 Msa1465380:intron 40.0%
AGCTATTGCTTTCAGAGTCA+AGG + tig0045207:1373-1392 Msa1465380:CDS 40.0%
GCTATTGCTTTCAGAGTCAA+GGG + tig0045207:1374-1393 Msa1465380:CDS 40.0%
AATCTGCAGCAAGAACAGAA+TGG + tig0045207:1477-1496 Msa1465380:CDS 40.0%
ATTGTGGAGATAAAGGGGTT+TGG - tig0045207:1509-1528 Msa1465380:intergenic 40.0%
TTGTGTTTAGCAGCATACCT+AGG + tig0045207:1576-1595 Msa1465380:CDS 40.0%
GTTGTGACAATGACTACTGT+TGG + tig0045207:1684-1703 Msa1465380:CDS 40.0%
GCATGCATTTATGTCTTCAC+TGG + tig0045207:1750-1769 Msa1465380:CDS 40.0%
CATTTATGTCTTCACTGGCA+TGG + tig0045207:1755-1774 Msa1465380:CDS 40.0%
ATAACCTAAAGTAGTGACCG+TGG - tig0045207:2033-2052 Msa1465380:intergenic 40.0%
! ACGGTCACTACTTTAGGTTA+TGG + tig0045207:2032-2051 Msa1465380:CDS 40.0%
! CGGTCACTACTTTAGGTTAT+GGG + tig0045207:2033-2052 Msa1465380:CDS 40.0%
! GGTCACTACTTTAGGTTATG+GGG + tig0045207:2034-2053 Msa1465380:CDS 40.0%
AAACACGGCAAAAATCCTAC+CGG - tig0045207:2081-2100 Msa1465380:intergenic 40.0%
! GTAGGATTTTTGCCGTGTTT+TGG + tig0045207:2081-2100 Msa1465380:CDS 40.0%
GCTGCTCAATATCCAAAACA+CGG - tig0045207:2096-2115 Msa1465380:intergenic 40.0%
AAAAGACTGAGCCAAGCAAA+TGG - tig0045207:2120-2139 Msa1465380:intergenic 40.0%
TTGATGGAGACAAAGTTGTC+AGG + tig0045207:2240-2259 Msa1465380:CDS 40.0%
AAAACCCGTCAAATTGGGTT+TGG - tig0045207:2472-2491 Msa1465380:intergenic 40.0%
ATACCCAAACCCAGTCAAAA+CGG - tig0045207:2497-2516 Msa1465380:intergenic 40.0%
!! TTTTGACTGGGTTTGGGTAT+GGG + tig0045207:2497-2516 Msa1465380:intron 40.0%
CCGATTTCAAAATACGGGTA+TGG + tig0045207:2532-2551 Msa1465380:intron 40.0%
TTCAAAATACGGGTATGGGA+CGG + tig0045207:2537-2556 Msa1465380:intron 40.0%
! TTTACATTTGGGACGGGTTT+GGG - tig0045207:2598-2617 Msa1465380:intergenic 40.0%
!! TTTTACATTTGGGACGGGTT+TGG - tig0045207:2599-2618 Msa1465380:intergenic 40.0%
TGCTAAAGTGAGCGTATTGT+TGG + tig0045207:2725-2744 Msa1465380:intron 40.0%
AAATTATTCAATGCGGGGAC+GGG + tig0045207:2806-2825 Msa1465380:intron 40.0%
ATTCAATTTCTCATCCCCGT+TGG + tig0045207:2871-2890 Msa1465380:intron 40.0%
TTCAATTTCTCATCCCCGTT+GGG + tig0045207:2872-2891 Msa1465380:intron 40.0%
CGGGTAAGTATATGAGAATC+GGG + tig0045207:2909-2928 Msa1465380:intron 40.0%
GTATATGAGAATCGGGTATG+TGG + tig0045207:2916-2935 Msa1465380:intron 40.0%
TATGATCTTACTGCATCTCC+CGG - tig0045207:3270-3289 Msa1465380:intergenic 40.0%
TCAACGCAATACTAGTGATG+AGG - tig0045207:3302-3321 Msa1465380:intergenic 40.0%
GTGGTTCAGACTTCAGAACA+TGG + tig0045207:383-402 Msa1465380:intron 45.0%
ACATGTGGGTCCCATTGTTA+CGG + tig0045207:500-519 Msa1465380:intron 45.0%
TTAAATGTGCCCCTTGCAAG+CGG + tig0045207:679-698 Msa1465380:intron 45.0%
ACTGGGTAAGAAAGAGTGAG+TGG + tig0045207:737-756 Msa1465380:intron 45.0%
TACCGGTAAAACCACTTGTG+AGG + tig0045207:829-848 Msa1465380:intron 45.0%
!! AGCCTCACAAGTGGTTTTAC+CGG - tig0045207:834-853 Msa1465380:intergenic 45.0%
TTCTTCAGAGAAGAAGACCG+CGG + tig0045207:1427-1446 Msa1465380:CDS 45.0%
! AACATAAGGTACCTGTGCCT+AGG - tig0045207:1596-1615 Msa1465380:intergenic 45.0%
TGTTCCACGGTCACTACTTT+AGG + tig0045207:2026-2045 Msa1465380:CDS 45.0%
ATTGAGCAGCACCATTTGCT+TGG + tig0045207:2106-2125 Msa1465380:CDS 45.0%
AGCAGACACTTCACAATTGC+AGG + tig0045207:2294-2313 Msa1465380:intron 45.0%
GCAGACACTTCACAATTGCA+GGG + tig0045207:2295-2314 Msa1465380:intron 45.0%
!! AAATTGGGTTTGGTTCGGGT+GGG - tig0045207:2462-2481 Msa1465380:intergenic 45.0%
! CGTCAAATTGGGTTTGGTTC+GGG - tig0045207:2466-2485 Msa1465380:intergenic 45.0%
! CCGTCAAATTGGGTTTGGTT+CGG - tig0045207:2467-2486 Msa1465380:intergenic 45.0%
CCGAACCAAACCCAATTTGA+CGG + tig0045207:2464-2483 Msa1465380:intron 45.0%
CGAACCAAACCCAATTTGAC+GGG + tig0045207:2465-2484 Msa1465380:intron 45.0%
TACCCAAACCCAGTCAAAAC+GGG - tig0045207:2496-2515 Msa1465380:intergenic 45.0%
!!! GTTTTGACTGGGTTTGGGTA+TGG + tig0045207:2496-2515 Msa1465380:intron 45.0%
TCAAAATACGGGTATGGGAC+GGG + tig0045207:2538-2557 Msa1465380:intron 45.0%
AATTATTCAATGCGGGGACG+GGG + tig0045207:2807-2826 Msa1465380:intron 45.0%
ATGAGAATCGGGTATGTGGA+TGG + tig0045207:2920-2939 Msa1465380:intron 45.0%
TGAGAATCGGGTATGTGGAT+GGG + tig0045207:2921-2940 Msa1465380:intron 45.0%
TATCGTTAGGCATGGCAATG+GGG - tig0045207:2972-2991 Msa1465380:intergenic 45.0%
GTATCGTTAGGCATGGCAAT+GGG - tig0045207:2973-2992 Msa1465380:intergenic 45.0%
GATACACGTATCGTTAGGCA+TGG - tig0045207:2980-2999 Msa1465380:intergenic 45.0%
ACGCCGTCGATACATATCAA+AGG - tig0045207:3169-3188 Msa1465380:intergenic 45.0%
ACAACAAACTCTGCAGCACT+GGG - tig0045207:3390-3409 Msa1465380:intergenic 45.0%
TACAACAAACTCTGCAGCAC+TGG - tig0045207:3391-3410 Msa1465380:intergenic 45.0%
CATGTGGGTCCCATTGTTAC+GGG + tig0045207:501-520 Msa1465380:intron 50.0%
CTCTCAAACAGCCTCACAAG+TGG - tig0045207:843-862 Msa1465380:intergenic 50.0%
CTAAGATGCTTAGGCCCTGT+TGG - tig0045207:1285-1304 Msa1465380:intergenic 50.0%
! GCGGTCTTCTTCTCTGAAGA+AGG - tig0045207:1428-1447 Msa1465380:intergenic 50.0%
GTGGAGATAAAGGGGTTTGG+AGG - tig0045207:1506-1525 Msa1465380:intergenic 50.0%
TTAGCAGCATACCTAGGCAC+AGG + tig0045207:1582-1601 Msa1465380:CDS 50.0%
TCTTGCTGAGTCCATGTGCA+AGG + tig0045207:1839-1858 Msa1465380:CDS 50.0%
CTTGAGGCAGCAGATCTTGA+TGG + tig0045207:2224-2243 Msa1465380:CDS 50.0%
GGCAACAAAACCCATACCCA+CGG + tig0045207:2433-2452 Msa1465380:intron 50.0%
!! CAAATTGGGTTTGGTTCGGG+TGG - tig0045207:2463-2482 Msa1465380:intergenic 50.0%
CGGGGAAAACCCGTCAAATT+GGG - tig0045207:2477-2496 Msa1465380:intergenic 50.0%
ACGGGGAAAACCCGTCAAAT+TGG - tig0045207:2478-2497 Msa1465380:intergenic 50.0%
!!! GGGTTTTCCCCGTTTTGACT+GGG + tig0045207:2485-2504 Msa1465380:intron 50.0%
!!! TTCCCCGTTTTGACTGGGTT+TGG + tig0045207:2490-2509 Msa1465380:intron 50.0%
!!! TCCCCGTTTTGACTGGGTTT+GGG + tig0045207:2491-2510 Msa1465380:intron 50.0%
ACCCAAACCCAGTCAAAACG+GGG - tig0045207:2495-2514 Msa1465380:intergenic 50.0%
ACTGGGTTTGGGTATGGGTA+TGG + tig0045207:2502-2521 Msa1465380:intron 50.0%
CTGGGTTTGGGTATGGGTAT+GGG + tig0045207:2503-2522 Msa1465380:intron 50.0%
! TTTGGGACGGGTTTGGGTAT+GGG - tig0045207:2592-2611 Msa1465380:intergenic 50.0%
! ATTTGGGACGGGTTTGGGTA+TGG - tig0045207:2593-2612 Msa1465380:intergenic 50.0%
TTTCTCATCCCCGTTGGGTA+TGG + tig0045207:2877-2896 Msa1465380:intron 50.0%
TTCTCATCCCCGTTGGGTAT+GGG + tig0045207:2878-2897 Msa1465380:intron 50.0%
ATACCCTACCCATACCCAAC+GGG - tig0045207:2889-2908 Msa1465380:intergenic 50.0%
GATACCCTACCCATACCCAA+CGG - tig0045207:2890-2909 Msa1465380:intergenic 50.0%
GTTGGGTATGGGTAGGGTAT+CGG + tig0045207:2889-2908 Msa1465380:intron 50.0%
! TTGGGTATGGGTAGGGTATC+GGG + tig0045207:2890-2909 Msa1465380:intron 50.0%
GAGAATCGGGTATGTGGATG+GGG + tig0045207:2922-2941 Msa1465380:intron 50.0%
CGTATCGTTAGGCATGGCAA+TGG - tig0045207:2974-2993 Msa1465380:intergenic 50.0%
TCTTCACCGCGATGAGTGCT+AGG + tig0045207:424-443 Msa1465380:intron 55.0%
CTTCACCGCGATGAGTGCTA+GGG + tig0045207:425-444 Msa1465380:intron 55.0%
AGTGTCCCTAGCACTCATCG+CGG - tig0045207:433-452 Msa1465380:intergenic 55.0%
GGGGCTACTCCCGTAACAAT+GGG - tig0045207:513-532 Msa1465380:intergenic 55.0%
TGGGGCTACTCCCGTAACAA+TGG - tig0045207:514-533 Msa1465380:intergenic 55.0%
AGTAGCCCCACGTAAAGTGG+TGG + tig0045207:524-543 Msa1465380:intron 55.0%
GTAGCCCCACGTAAAGTGGT+GGG + tig0045207:525-544 Msa1465380:intron 55.0%
TAGCCCCACGTAAAGTGGTG+GGG + tig0045207:526-545 Msa1465380:intron 55.0%
ATTCCACCGTCCGCTTGCAA+GGG - tig0045207:692-711 Msa1465380:intergenic 55.0%
AATTCCACCGTCCGCTTGCA+AGG - tig0045207:693-712 Msa1465380:intergenic 55.0%
TTGCAAGCGGACGGTGGAAT+TGG + tig0045207:692-711 Msa1465380:intron 55.0%
GTCTTCACTGGCATGGCTCT+CGG + tig0045207:1762-1781 Msa1465380:CDS 55.0%
AAGAGCTTCTCGACTGCTGC+CGG + tig0045207:2059-2078 Msa1465380:CDS 55.0%
GAAGCACGGACACGATACGT+AGG + tig0045207:2407-2426 Msa1465380:intron 55.0%
ACGGACACGATACGTAGGCA+TGG + tig0045207:2412-2431 Msa1465380:intron 55.0%
!! CGGGTTTTCCCCGTTTTGAC+TGG + tig0045207:2484-2503 Msa1465380:intron 55.0%
TACGGGTATGGGACGGGTAA+CGG + tig0045207:2544-2563 Msa1465380:intron 55.0%
!! GGGACGGGTAACGGGTATAT+AGG + tig0045207:2553-2572 Msa1465380:intron 55.0%
TTTGGGTATGGGTTCGGGGT+GGG - tig0045207:2581-2600 Msa1465380:intergenic 55.0%
ACGGGTTTGGGTATGGGTTC+GGG - tig0045207:2586-2605 Msa1465380:intergenic 55.0%
! GACGGGTTTGGGTATGGGTT+CGG - tig0045207:2587-2606 Msa1465380:intergenic 55.0%
ATCCCCGTTGGGTATGGGTA+GGG + tig0045207:2883-2902 Msa1465380:intron 55.0%
TACCCTACCCATACCCAACG+GGG - tig0045207:2888-2907 Msa1465380:intergenic 55.0%
ATCGGGTATGTGGATGGGGA+AGG + tig0045207:2926-2945 Msa1465380:intron 55.0%
GGGAGTAGCCCCACGTAAAG+TGG + tig0045207:521-540 Msa1465380:intron 60.0%
TGGCCCCACCACTTTACGTG+GGG - tig0045207:532-551 Msa1465380:intergenic 60.0%
GTGGCCCCACCACTTTACGT+GGG - tig0045207:533-552 Msa1465380:intergenic 60.0%
TGTGGCCCCACCACTTTACG+TGG - tig0045207:534-553 Msa1465380:intergenic 60.0%
ATGTGCCCCTTGCAAGCGGA+CGG + tig0045207:683-702 Msa1465380:intron 60.0%
TTCCACCGTCCGCTTGCAAG+GGG - tig0045207:691-710 Msa1465380:intergenic 60.0%
TTCACTGGCATGGCTCTCGG+TGG + tig0045207:1765-1784 Msa1465380:CDS 60.0%
GGGTGGGTAACCGTGGGTAT+GGG - tig0045207:2446-2465 Msa1465380:intergenic 60.0%
! TGGTTCGGGTGGGTAACCGT+GGG - tig0045207:2452-2471 Msa1465380:intergenic 60.0%
!! TTGGTTCGGGTGGGTAACCG+TGG - tig0045207:2453-2472 Msa1465380:intergenic 60.0%
ACGGGTATGGGACGGGTAAC+GGG + tig0045207:2545-2564 Msa1465380:intron 60.0%
GTTTGGGTATGGGTTCGGGG+TGG - tig0045207:2582-2601 Msa1465380:intergenic 60.0%
CGGGTTTGGGTATGGGTTCG+GGG - tig0045207:2585-2604 Msa1465380:intergenic 60.0%
ATTCAATGCGGGGACGGGGA+TGG + tig0045207:2811-2830 Msa1465380:intron 60.0%
TTCAATGCGGGGACGGGGAT+GGG + tig0045207:2812-2831 Msa1465380:intron 60.0%
ATACCCAAACCCGTCGGGGA+CGG + tig0045207:2841-2860 Msa1465380:intron 60.0%
CATCCCCGTTGGGTATGGGT+AGG + tig0045207:2882-2901 Msa1465380:intron 60.0%
TTAGGCATGGCAATGGGGCG+GGG - tig0045207:2967-2986 Msa1465380:intergenic 60.0%
GTTAGGCATGGCAATGGGGC+GGG - tig0045207:2968-2987 Msa1465380:intergenic 60.0%
CGTTAGGCATGGCAATGGGG+CGG - tig0045207:2969-2988 Msa1465380:intergenic 60.0%
! CACACGTATCTGAGGCGTGC+TGG + tig0045207:3079-3098 Msa1465380:intron 60.0%
! GAGACGTGTCGACGGCGTAT+CGG + tig0045207:3101-3120 Msa1465380:intron 60.0%
CAGAGAAGAAGACCGCGGCG+TGG + tig0045207:1432-1451 Msa1465380:CDS 65.0%
AGAAGAAGACCGCGGCGTGG+CGG + tig0045207:1435-1454 Msa1465380:CDS 65.0%
! TCTGAAGTTCCGCCACGCCG+CGG - tig0045207:1447-1466 Msa1465380:intergenic 65.0%
GCTTCTCGACTGCTGCCGGT+AGG + tig0045207:2063-2082 Msa1465380:CDS 65.0%
CGGGTGGGTAACCGTGGGTA+TGG - tig0045207:2447-2466 Msa1465380:intergenic 65.0%
TCAATGCGGGGACGGGGATG+GGG + tig0045207:2813-2832 Msa1465380:intron 65.0%
GCGGGGATACCCAAACCCGT+CGG + tig0045207:2835-2854 Msa1465380:intron 65.0%
CGGGGATACCCAAACCCGTC+GGG + tig0045207:2836-2855 Msa1465380:intron 65.0%
GGGGATACCCAAACCCGTCG+GGG + tig0045207:2837-2856 Msa1465380:intron 65.0%
TACCCAAACCCGTCGGGGAC+GGG + tig0045207:2842-2861 Msa1465380:intron 65.0%
AATCCCATCCCCGTCCCCGA+CGG - tig0045207:2854-2873 Msa1465380:intergenic 65.0%
GCGTGCTGGAGACGTGTCGA+CGG + tig0045207:3093-3112 Msa1465380:intron 65.0%
TGCCCCTTGCAAGCGGACGG+TGG + tig0045207:686-705 Msa1465380:intron 70.0%
ACCCAAACCCGTCGGGGACG+GGG + tig0045207:2843-2862 Msa1465380:intron 70.0%
! TCCCCGTCCCCGACGGGTTT+GGG - tig0045207:2847-2866 Msa1465380:intergenic 70.0%
! ATCCCCGTCCCCGACGGGTT+TGG - tig0045207:2848-2867 Msa1465380:intergenic 70.0%
AAACCCGTCGGGGACGGGGA+TGG + tig0045207:2847-2866 Msa1465380:intron 70.0%
AACCCGTCGGGGACGGGGAT+GGG + tig0045207:2848-2867 Msa1465380:intron 70.0%
ATCCCATCCCCGTCCCCGAC+GGG - tig0045207:2853-2872 Msa1465380:intergenic 70.0%
CAATGGGGCGGGGTGGGGAT+GGG - tig0045207:2957-2976 Msa1465380:intergenic 70.0%
CATGGCAATGGGGCGGGGTG+GGG - tig0045207:2962-2981 Msa1465380:intergenic 70.0%
GCATGGCAATGGGGCGGGGT+GGG - tig0045207:2963-2982 Msa1465380:intergenic 70.0%
ATGCGGGGACGGGGATGGGG+CGG + tig0045207:2816-2835 Msa1465380:intron 75.0%
GCAATGGGGCGGGGTGGGGA+TGG - tig0045207:2958-2977 Msa1465380:intergenic 75.0%
GGCATGGCAATGGGGCGGGG+TGG - tig0045207:2964-2983 Msa1465380:intergenic 75.0%
! TGCGGGGACGGGGATGGGGC+GGG + tig0045207:2817-2836 Msa1465380:intron 80.0%
! GCGGGGACGGGGATGGGGCG+GGG + tig0045207:2818-2837 Msa1465380:intron 85.0%
Chromosome Type Strat End Strand Name
tig0045207 gene 29 3723 29 ID=Msa1465380;Name=Msa1465380
tig0045207 mRNA 29 3723 29 ID=Msa1465380-mRNA-1;Parent=Msa1465380;Name=Msa1465380-mRNA-1;_AED=0.01;_eAED=0.01;_QI=129|1|1|1|0.5|0.33|3|184|352
tig0045207 exon 29 127 29 ID=Msa1465380-mRNA-1:exon:24780;Parent=Msa1465380-mRNA-1
tig0045207 exon 1321 2261 1321 ID=Msa1465380-mRNA-1:exon:24781;Parent=Msa1465380-mRNA-1
tig0045207 exon 3392 3723 3392 ID=Msa1465380-mRNA-1:exon:24782;Parent=Msa1465380-mRNA-1
tig0045207 five_prime_UTR 29 127 29 ID=Msa1465380-mRNA-1:five_prime_utr;Parent=Msa1465380-mRNA-1
tig0045207 five_prime_UTR 1321 1350 1321 ID=Msa1465380-mRNA-1:five_prime_utr;Parent=Msa1465380-mRNA-1
tig0045207 CDS 1351 2261 1351 ID=Msa1465380-mRNA-1:cds;Parent=Msa1465380-mRNA-1
tig0045207 CDS 3392 3539 3392 ID=Msa1465380-mRNA-1:cds;Parent=Msa1465380-mRNA-1
tig0045207 three_prime_UTR 3540 3723 3540 ID=Msa1465380-mRNA-1:three_prime_utr;Parent=Msa1465380-mRNA-1
Gene Sequence

>Msa1465380

ATGGGCAGTGATGAAGCTCAACAGCTATTGCTTTCAGAGTCAAGGGAACATTCTCATCTCAATGAGAAGAGTGACCTTCTTCAGAGAAGAAGACCGCGGCGTGGCGGAACTTCAGAGACAGATATCAATCTGCAGCAAGAACAGAATGGTGTCCTCCAAACCCCTTTATCTCCACAATGTATAACTGATAAACAAGAAGCAGAATTCAAGTTCAGGCTAGTGTTCTTGTGTTTAGCAGCATACCTAGGCACAGGTACCTTATGTTTCTATCTAACAAGTTACCAAATTGAGGGCATAAAAACAAATAATTTTCTTGATGCCCTTTATTTCTGTGTTGTGACAATGACTACTGTTGGATATGGAGATCTTGTTCCAAATAGCACTATAGCAAAACTCCTTGCATGCATTTATGTCTTCACTGGCATGGCTCTCGGTGGCTTAATTCTTAGCAAAGCAGCAGATTACATTGTTGAGAAACAGGAAATATTTCTTGCTGAGTCCATGTGCAAGGCTGAAAATTTTGGTCTACAAGAGGTTGCTAAAGAGCTTGAAACTAAGAAAAGCAAATACAAGTTTGTGCTTGCAGTAGCCACTTTTTTTGTGCTCATGATTGCAGGAACTGTTTTTCTGTATTTTATTGAGAATCTAGATTTTGTGGATGCACTCTATTGTGTTTGTTCCACGGTCACTACTTTAGGTTATGGGGATAAGAGCTTCTCGACTGCTGCCGGTAGGATTTTTGCCGTGTTTTGGATATTGAGCAGCACCATTTGCTTGGCTCAGTCTTTTGCTTATCTTGCTGAACTCTATACTGAAGATAGACAAAGATCACTGGCAAAAATGGTTCTCACCCGAAAATTATCACTAAGTGATCTTGAGGCAGCAGATCTTGATGGAGACAAAGTTGTCAGTGCTGCAGAGTTTGTTGTATACAAGTTGAAGGAAATGGGAAAGATCAACCAAGAAGATATTTCAGCAGTGATGGAGAGTTTTAGAAAACTAGACTGTGATCAATCAGGAACTCTGACTGAAGCTGATATCAGAAATTTTGAATTCTGA

Protein sequence

>Msa1465380

MGSDEAQQLLLSESREHSHLNEKSDLLQRRRPRRGGTSETDINLQQEQNGVLQTPLSPQCITDKQEAEFKFRLVFLCLAAYLGTGTLCFYLTSYQIEGIKTNNFLDALYFCVVTMTTVGYGDLVPNSTIAKLLACIYVFTGMALGGLILSKAADYIVEKQEIFLAESMCKAENFGLQEVAKELETKKSKYKFVLAVATFFVLMIAGTVFLYFIENLDFVDALYCVCSTVTTLGYGDKSFSTAAGRIFAVFWILSSTICLAQSFAYLAELYTEDRQRSLAKMVLTRKLSLSDLEAADLDGDKVVSAAEFVVYKLKEMGKINQEDISAVMESFRKLDCDQSGTLTEADIRNFEF*