AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0383960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0383960 MtrunA17_Chr3g0140681 93.564 404 9 2 1 392 1 399 0.0 773
Msa0383960 MtrunA17_Chr0c06g0493481 52.770 379 151 7 30 392 52 418 1.38e-132 386
Msa0383960 MtrunA17_Chr4g0072801 55.043 347 131 6 64 392 72 411 4.15e-129 377
Msa0383960 MtrunA17_Chr1g0170451 47.633 338 148 6 66 390 31 352 6.79e-99 298
Msa0383960 MtrunA17_Chr8g0379001 40.730 356 185 5 61 391 85 439 5.27e-85 266
Msa0383960 MtrunA17_Chr2g0283771 40.719 334 171 7 61 371 79 408 4.10e-73 234
Msa0383960 MtrunA17_Chr7g0214251 85.185 81 12 0 125 205 46 126 6.03e-43 146
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0383960 AT1G10040.1 57.453 369 134 7 36 391 53 411 6.82e-143 412
Msa0383960 AT1G10040.2 56.897 348 127 7 36 370 53 390 4.22e-131 382
Msa0383960 AT4G25770.1 49.185 368 137 7 48 392 78 418 2.16e-114 340
Msa0383960 AT5G51180.2 48.688 343 146 7 62 391 31 356 2.69e-104 312
Msa0383960 AT5G51180.1 48.688 343 146 7 62 391 31 356 2.69e-104 312
Msa0383960 AT4G25770.2 48.266 346 129 7 48 370 78 396 7.48e-104 313
Msa0383960 AT1G29120.8 40.720 361 176 7 58 391 95 444 2.00e-82 259
Msa0383960 AT1G29120.1 40.720 361 176 7 58 391 94 443 2.31e-82 259
Msa0383960 AT1G29120.2 40.720 361 176 7 58 391 94 443 2.31e-82 259
Msa0383960 AT1G29120.5 40.608 362 176 8 58 391 94 444 1.23e-80 255
Msa0383960 AT1G29120.7 41.765 340 160 7 58 370 94 422 6.82e-78 247
Msa0383960 AT1G29120.3 44.074 270 129 5 58 314 94 354 1.38e-68 222
Msa0383960 AT1G29120.4 44.074 270 129 5 58 314 94 354 1.75e-68 221
Msa0383960 AT1G29120.6 43.103 232 111 4 58 276 94 317 1.36e-57 191

Find 116 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTACACGGTTGCATAATT+AGG 0.238816 3_1:+87024086 Msa0383960:three_prime_UTR
CACTTGATCATTATGGTTAA+TGG 0.242137 3_1:+87019719 Msa0383960:CDS
TTTCGTGTTATAATACTTCT+TGG 0.244970 3_1:-87024012 None:intergenic
CCCTACTCACTTGATCATTA+TGG 0.263643 3_1:+87019712 Msa0383960:CDS
TGTATTGCAGTGCTCATAAT+TGG 0.264626 3_1:+87019856 Msa0383960:intron
TTCTCTTCAGGTCTGCTTTA+CGG 0.279950 3_1:+87021840 Msa0383960:intron
TTGCCATTGGAAGTTGAAAA+AGG 0.291569 3_1:+87023975 Msa0383960:three_prime_UTR
GCCTTACCCTATTTGTTAGA+AGG 0.299293 3_1:-87023800 None:intergenic
TCTCATATTTCTGAAAGAAA+TGG 0.311292 3_1:+87024132 Msa0383960:three_prime_UTR
ACAATGTACAATAACATCAT+AGG 0.313578 3_1:-87019913 None:intergenic
ATTGAAGTTGTTGATGCTTC+TGG 0.317200 3_1:+87019677 Msa0383960:CDS
GTTATGTGGATTTCACTCTT+TGG 0.332758 3_1:+87021599 Msa0383960:CDS
GCAGACGTAATAAAATTAAT+AGG 0.342709 3_1:-87021275 None:intergenic
GATCCCAATTCACTGTTGTT+AGG 0.351788 3_1:-87023347 None:intergenic
TCTCGTCTTTCACGGTTTCT+TGG 0.354731 3_1:+87021633 Msa0383960:CDS
TCTCGCACATAATGCAATTC+AGG 0.356007 3_1:+87023407 Msa0383960:CDS
GAGGCCTAACAACAGTGAAT+TGG 0.373395 3_1:+87023343 Msa0383960:CDS
TATTTCTAAGGAACTATCTC+AGG 0.376332 3_1:+87021172 Msa0383960:CDS
AAGTTGAAATTCCCCAAGTT+TGG 0.377997 3_1:+87019611 Msa0383960:CDS
TCACGGTTTCTTGGTAAAAC+AGG 0.379925 3_1:+87021642 Msa0383960:CDS
TTACATGAATTTAATATCTT+CGG 0.384225 3_1:-87021733 None:intergenic
TTATGAGAGAGATATTTCTA+AGG 0.386599 3_1:+87021160 Msa0383960:CDS
TCTTCAACATTGACATTTGA+CGG 0.387095 3_1:+87020815 Msa0383960:CDS
GATTCACTTGGAACTTCCTC+TGG 0.397952 3_1:-87022208 None:intergenic
GATTCTGAAACAACCAAACT+TGG 0.398649 3_1:-87019624 None:intergenic
CTCATATTTCTGAAAGAAAT+GGG 0.401263 3_1:+87024133 Msa0383960:three_prime_UTR
TCTAACATGACATTCTTGAT+TGG 0.415522 3_1:-87021222 None:intergenic
GAATCCAACATGATGCTAAA+GGG 0.419749 3_1:+87019642 Msa0383960:CDS
CCCTTGAAAAGATAAAATAA+TGG 0.425247 3_1:-87023822 None:intergenic
CTTTAGGTACCTTTGTTATG+TGG 0.429412 3_1:+87021585 Msa0383960:intron
AGGCCTAACAACAGTGAATT+GGG 0.430321 3_1:+87023344 Msa0383960:CDS
CTGCAAAGCAATTTCTCAAA+AGG 0.432708 3_1:+87019886 Msa0383960:CDS
ATTATGGTTAATGGTCTCAT+TGG 0.432977 3_1:+87019728 Msa0383960:CDS
AAACAGCATCTCGTCTTTCA+CGG 0.439813 3_1:+87021625 Msa0383960:CDS
AGAATCCAACATGATGCTAA+AGG 0.445116 3_1:+87019641 Msa0383960:CDS
TGGTTAATGGTCTCATTGGC+AGG 0.445481 3_1:+87019732 Msa0383960:CDS
GATGGAGCACATCATCTATA+AGG 0.445579 3_1:+87022012 Msa0383960:CDS
CTACTCCGTCGGAATTAATT+CGG 0.449536 3_1:-87023721 None:intergenic
CTTCGGAGTCACGAACCATC+TGG 0.449587 3_1:-87021716 None:intergenic
ATAGGCAACGCGACGTTTGA+AGG 0.458227 3_1:-87021864 None:intergenic
CCTTACCCTATTTGTTAGAA+GGG 0.472177 3_1:-87023799 None:intergenic
TTTGACGGTGTTGATGTAAC+GGG 0.476103 3_1:+87020830 Msa0383960:CDS
CAATGTACAATAACATCATA+GGG 0.477170 3_1:-87019912 None:intergenic
TCCAATGTTAGTAGTGGATC+CGG 0.480213 3_1:+87022229 Msa0383960:CDS
TTCCTCTGGAAGAACGGAAG+TGG 0.484010 3_1:-87022194 None:intergenic
CTACTAACATTGGATTCACT+TGG 0.486876 3_1:-87022220 None:intergenic
ACGTCAGCTTCAGTGGTAGT+AGG 0.487212 3_1:+87023376 Msa0383960:CDS
ATTATGCAACCGTGTAGAAT+AGG 0.488175 3_1:-87024082 None:intergenic
TCTGAAAGAAATGGGAAGAA+TGG 0.490206 3_1:+87024141 Msa0383960:three_prime_UTR
CTTTAGGTGGCTTGATAGCA+AGG 0.492030 3_1:+87021120 Msa0383960:intron
ACCGGATCCACTACTAACAT+TGG 0.495965 3_1:-87022230 None:intergenic
ACAACGCTATGTTGAACCTT+GGG 0.503566 3_1:-87019542 None:intergenic
TCGCCACTTTGTAGTGGCGA+GGG 0.504024 3_1:+87023887 Msa0383960:three_prime_UTR
AACAACGCTATGTTGAACCT+TGG 0.505025 3_1:-87019543 None:intergenic
GAAGTATTATAACACGAAAG+AGG 0.510033 3_1:+87024016 Msa0383960:three_prime_UTR
CAGAAATATGAGAAAGAACA+AGG 0.514463 3_1:-87024122 None:intergenic
AATATCTCTCTCATAAAGCT+TGG 0.517633 3_1:-87021153 None:intergenic
CCATAATGATCAAGTGAGTA+GGG 0.520538 3_1:-87019712 None:intergenic
ACCTCCTCTTCTTCTCCAGA+TGG 0.522445 3_1:+87021701 Msa0383960:CDS
CATCCCCTTTAGCATCATGT+TGG 0.522722 3_1:-87019646 None:intergenic
CGAATTGACGTCAGCTTCAG+TGG 0.524198 3_1:+87023369 Msa0383960:CDS
TACAAAGTGGCGAAGTAAGT+TGG 0.528086 3_1:-87023877 None:intergenic
ACGCCGCACCTTGGTTGTAG+AGG 0.533774 3_1:+87021299 Msa0383960:CDS
ATTCTGAAACAACCAAACTT+GGG 0.536584 3_1:-87019623 None:intergenic
GACTCCTAAATAGAGCTAGT+TGG 0.537639 3_1:+87021990 Msa0383960:intron
CCCTTCTAACAAATAGGGTA+AGG 0.537806 3_1:+87023799 Msa0383960:three_prime_UTR
CGCCGCACCTTGGTTGTAGA+GGG 0.541933 3_1:+87021300 Msa0383960:CDS
ATTATAACACGAAAGAGGGC+AGG 0.546516 3_1:+87024021 Msa0383960:three_prime_UTR
ACGTCTGCAACGCCGCACCT+TGG 0.547946 3_1:+87021290 Msa0383960:CDS
TGTCATGTTAGAAAATATGA+AGG 0.548935 3_1:+87021233 Msa0383960:CDS
TCCTCTGGAAGAACGGAAGT+GGG 0.550815 3_1:-87022193 None:intergenic
GTCTCTACATTTACAATGTG+TGG 0.550977 3_1:-87022163 None:intergenic
TTCGCCACTTTGTAGTGGCG+AGG 0.555277 3_1:+87023886 Msa0383960:three_prime_UTR
GAAAATCGTCAATCATGTGT+TGG 0.557426 3_1:-87023751 None:intergenic
TGGAACTTCCTCTGGAAGAA+CGG 0.558559 3_1:-87022200 None:intergenic
CTTACTTCGCCACTTTGTAG+TGG 0.559949 3_1:+87023881 Msa0383960:three_prime_UTR
GGGAATATGCACAAACAACC+CGG 0.562128 3_1:-87023853 None:intergenic
GCTTATGCCCTCTACAACCA+AGG 0.563131 3_1:-87021307 None:intergenic
ACCATAATGATCAAGTGAGT+AGG 0.563645 3_1:-87019713 None:intergenic
CGAACCATCTGGAGAAGAAG+AGG 0.566975 3_1:-87021705 None:intergenic
CCTAAATAGAGCTAGTTGGA+TGG 0.569660 3_1:+87021994 Msa0383960:intron
AAGTATTATAACACGAAAGA+GGG 0.570956 3_1:+87024017 Msa0383960:three_prime_UTR
CGCCACTTTGTAGTGGCGAG+GGG 0.576171 3_1:+87023888 Msa0383960:three_prime_UTR
ACCCACTTCCGTTCTTCCAG+AGG 0.581065 3_1:+87022192 Msa0383960:CDS
CAACATGATGCTAAAGGGGA+TGG 0.581086 3_1:+87019647 Msa0383960:CDS
AGTGAATCCAATGTTAGTAG+TGG 0.581455 3_1:+87022223 Msa0383960:CDS
TCCGGTAAAATTGACTTCGA+AGG 0.589799 3_1:+87022247 Msa0383960:CDS
TCCGTCGGAATTAATTCGGT+AGG 0.592120 3_1:-87023717 None:intergenic
CTTACCCTATTTGTTAGAAG+GGG 0.593843 3_1:-87023798 None:intergenic
ATTTCTAAGGAACTATCTCA+GGG 0.594450 3_1:+87021173 Msa0383960:CDS
ATTTGACGGTGTTGATGTAA+CGG 0.596656 3_1:+87020829 Msa0383960:CDS
TGGTTGTAGAGGGCATAAGC+AGG 0.598834 3_1:+87021310 Msa0383960:CDS
TTCTGAAACAACCAAACTTG+GGG 0.598993 3_1:-87019622 None:intergenic
TAATTCCGACGGAGTAGATG+TGG 0.607110 3_1:+87023727 Msa0383960:CDS
TTGGACCACATCTACTCCGT+CGG 0.612547 3_1:-87023732 None:intergenic
AATCCAACATGATGCTAAAG+GGG 0.615989 3_1:+87019643 Msa0383960:CDS
AACCCCTCGCCACTACAAAG+TGG 0.616024 3_1:-87023890 None:intergenic
TTACCCTATTTGTTAGAAGG+GGG 0.617394 3_1:-87023797 None:intergenic
AAAGTGGCGAAGTAAGTTGG+TGG 0.623365 3_1:-87023874 None:intergenic
GGGAAATAGATTAGCAGAGG+AGG 0.625847 3_1:+87020850 Msa0383960:CDS
GTCATAACGAATATTTGCAT+AGG 0.638991 3_1:-87021882 None:intergenic
ACCTACCGAATTAATTCCGA+CGG 0.640799 3_1:+87023716 Msa0383960:CDS
TTTATGCTACCTATTCTACA+CGG 0.641103 3_1:+87024073 Msa0383960:three_prime_UTR
AAGTGGCGAAGTAAGTTGGT+GGG 0.646263 3_1:-87023873 None:intergenic
ACCATCTGGAGAAGAAGAGG+AGG 0.646740 3_1:-87021702 None:intergenic
GCGTAGAAACGAGCTTCCAA+AGG 0.649589 3_1:+87022034 Msa0383960:CDS
AACGGGAAATAGATTAGCAG+AGG 0.651204 3_1:+87020847 Msa0383960:CDS
AGAAATATGAGAAAGAACAA+GGG 0.662843 3_1:-87024121 None:intergenic
CTCGCAGAGGAAATGATCAG+AGG 0.670602 3_1:+87023324 Msa0383960:intron
GGAATCACAACAGATACCCA+AGG 0.675906 3_1:+87019526 Msa0383960:CDS
GAGTGAAATCCACATAACAA+AGG 0.677854 3_1:-87021594 None:intergenic
TGCCCTCTACAACCAAGGTG+CGG 0.704644 3_1:-87021302 None:intergenic
AATGTACAATAACATCATAG+GGG 0.707394 3_1:-87019911 None:intergenic
TAGCATAAAAGCATCCTCTG+TGG 0.718989 3_1:-87024059 None:intergenic
TAAATTGATGAATACCACAG+AGG 0.748309 3_1:+87024045 Msa0383960:three_prime_UTR
TTTCTAAGGAACTATCTCAG+GGG 0.757402 3_1:+87021174 Msa0383960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATCTTTTTGAAAAAA+TGG + chr3_1:87022271-87022290 Msa0383960:intron 10.0%
!!! AAATTGGATTTAAATTTTAA+AGG - chr3_1:87023013-87023032 None:intergenic 10.0%
!! TCAATTAATGAATATAAAAT+TGG - chr3_1:87023029-87023048 None:intergenic 10.0%
!!! TTTTAACAAAAGTTTTAATT+TGG + chr3_1:87023505-87023524 Msa0383960:intron 10.0%
!! ATATATAATTGTTAATAGTT+AGG - chr3_1:87023667-87023686 None:intergenic 10.0%
!!! TAAAGTATTAAAACTCATAT+TGG - chr3_1:87019772-87019791 None:intergenic 15.0%
!! AATTCTATTCTTATTACAAA+GGG + chr3_1:87020259-87020278 Msa0383960:intron 15.0%
!!! AAATCAATTTTTATCAACAT+AGG + chr3_1:87020567-87020586 Msa0383960:intron 15.0%
!! TTACATGAATTTAATATCTT+CGG - chr3_1:87021736-87021755 None:intergenic 15.0%
!! AAATTAAGTATATCATATCA+CGG - chr3_1:87022080-87022099 None:intergenic 15.0%
!!! TATTATTGTAGATATTTTGT+TGG + chr3_1:87022500-87022519 Msa0383960:intron 15.0%
!! ATTCTTGATATATATCTTAA+AGG + chr3_1:87022592-87022611 Msa0383960:intron 15.0%
!! TTCTTGATATATATCTTAAA+GGG + chr3_1:87022593-87022612 Msa0383960:intron 15.0%
!!! TTTTATATTCATTAATTGAG+AGG + chr3_1:87023030-87023049 Msa0383960:intron 15.0%
!! GTTAATAGCTAAGTTATTAA+CGG - chr3_1:87019818-87019837 None:intergenic 20.0%
!! AATGATAATAATCGTTAGAA+AGG - chr3_1:87019984-87020003 None:intergenic 20.0%
!! TAGAATTATTACATGTGTTA+AGG + chr3_1:87020163-87020182 Msa0383960:intron 20.0%
!! GAATTCTATTCTTATTACAA+AGG + chr3_1:87020258-87020277 Msa0383960:intron 20.0%
!! ATGTAAAGTGATTTATGTTT+GGG - chr3_1:87020500-87020519 None:intergenic 20.0%
!! AATGTAAAGTGATTTATGTT+TGG - chr3_1:87020501-87020520 None:intergenic 20.0%
!!! ATACATTTTTTTTTACGCTA+TGG - chr3_1:87021509-87021528 None:intergenic 20.0%
!! GAAGATATTAAATTCATGTA+AGG + chr3_1:87021735-87021754 Msa0383960:intron 20.0%
!! AATTTAATTGGAATATGCAA+TGG - chr3_1:87021940-87021959 None:intergenic 20.0%
!!! TTGAAAAAATGGATTTCATT+TGG + chr3_1:87022282-87022301 Msa0383960:intron 20.0%
!! TACAATATCTAAAAAGTTCT+AGG + chr3_1:87022310-87022329 Msa0383960:intron 20.0%
!! ATATTTGAGTAATCTTCAAA+TGG - chr3_1:87022449-87022468 None:intergenic 20.0%
!! TGAAAAATTAACTTAAACAG+AGG - chr3_1:87022480-87022499 None:intergenic 20.0%
!!! AACTTTCTAAAAAATGCTTA+TGG - chr3_1:87022839-87022858 None:intergenic 20.0%
!! ACAAAAAGATTTATGTTCAA+TGG + chr3_1:87022865-87022884 Msa0383960:intron 20.0%
!! ACAATTATATATTCAATGCT+TGG + chr3_1:87023675-87023694 Msa0383960:intron 20.0%
!!! CCATTATTTTATCTTTTCAA+GGG + chr3_1:87023822-87023841 Msa0383960:three_prime_UTR 20.0%
!!! CATTATTTTATCTTTTCAAG+GGG + chr3_1:87023823-87023842 Msa0383960:three_prime_UTR 20.0%
! AATGTACAATAACATCATAG+GGG - chr3_1:87019914-87019933 None:intergenic 25.0%
! CAATGTACAATAACATCATA+GGG - chr3_1:87019915-87019934 None:intergenic 25.0%
! ACAATGTACAATAACATCAT+AGG - chr3_1:87019916-87019935 None:intergenic 25.0%
!! TAATCGTTAGAAAGGTATAA+AGG - chr3_1:87019976-87019995 None:intergenic 25.0%
!! AATTTTGTCTTCTCGAAAAA+TGG - chr3_1:87020329-87020348 None:intergenic 25.0%
! TATAATATGAAGCCAGAATT+TGG + chr3_1:87020407-87020426 Msa0383960:intron 25.0%
! TGCATTGAACAATAAATTCA+AGG - chr3_1:87020461-87020480 None:intergenic 25.0%
!! TTTTGAATGAATTGAGTTTG+TGG - chr3_1:87020550-87020569 None:intergenic 25.0%
! ATGATATAAATGCAATGACT+AGG - chr3_1:87020605-87020624 None:intergenic 25.0%
!! TTTTACAATCAAAGCAAAAC+TGG + chr3_1:87020737-87020756 Msa0383960:intron 25.0%
! CAATGCATTACATTAAATGA+TGG - chr3_1:87020766-87020785 None:intergenic 25.0%
! TCATTTATAGCTCATTCTTT+AGG + chr3_1:87021104-87021123 Msa0383960:intron 25.0%
!! TTATGAGAGAGATATTTCTA+AGG + chr3_1:87021160-87021179 Msa0383960:CDS 25.0%
! TGTCATGTTAGAAAATATGA+AGG + chr3_1:87021233-87021252 Msa0383960:CDS 25.0%
! AAATATGAAGGAAAAATTGC+AGG + chr3_1:87021245-87021264 Msa0383960:CDS 25.0%
! GCAGACGTAATAAAATTAAT+AGG - chr3_1:87021278-87021297 None:intergenic 25.0%
! AATTTATGTCTCCTTTACTA+TGG + chr3_1:87021425-87021444 Msa0383960:intron 25.0%
! TCTTACCATCAGTTAAAAAT+AGG - chr3_1:87021674-87021693 None:intergenic 25.0%
! TTCATGTAAGGTTTATTGTT+TGG + chr3_1:87021747-87021766 Msa0383960:intron 25.0%
!! TATGTTGTTTGTTCATGATT+CGG - chr3_1:87021810-87021829 None:intergenic 25.0%
! TATTATATCTCTTTCTCTTC+AGG + chr3_1:87021828-87021847 Msa0383960:intron 25.0%
! TGAACTAAAACAAAAGGATA+CGG - chr3_1:87021907-87021926 None:intergenic 25.0%
!! TGTTTCTGAACTAAAACAAA+AGG - chr3_1:87021913-87021932 None:intergenic 25.0%
! AGCTTATGATTATTCACTTA+TGG + chr3_1:87022680-87022699 Msa0383960:intron 25.0%
! ATGATTATTCACTTATGGAA+AGG + chr3_1:87022685-87022704 Msa0383960:intron 25.0%
! CTTATACTAGAATGAATAGT+AGG + chr3_1:87022790-87022809 Msa0383960:intron 25.0%
!!! CGTTGAACTTTTTTTTTAGA+GGG - chr3_1:87022895-87022914 None:intergenic 25.0%
!! CCTCTAAAAAAAAAGTTCAA+CGG + chr3_1:87022893-87022912 Msa0383960:intron 25.0%
!! GCAAAATAGTGAATTTTCAT+CGG + chr3_1:87022945-87022964 Msa0383960:intron 25.0%
!!! TAATTTTTGTTTACACACCA+AGG + chr3_1:87023055-87023074 Msa0383960:intron 25.0%
!! AATATGTCTTTTCCAATTCA+AGG - chr3_1:87023120-87023139 None:intergenic 25.0%
! TTGGAACTTCAATAAAATCA+TGG + chr3_1:87023524-87023543 Msa0383960:intron 25.0%
!!! GCCATTATTTTATCTTTTCA+AGG + chr3_1:87023821-87023840 Msa0383960:three_prime_UTR 25.0%
! CCCTTGAAAAGATAAAATAA+TGG - chr3_1:87023825-87023844 None:intergenic 25.0%
!!! TCTTTTTTGTGTACAATGAA+GGG - chr3_1:87023954-87023973 None:intergenic 25.0%
!!! ATCTTTTTTGTGTACAATGA+AGG - chr3_1:87023955-87023974 None:intergenic 25.0%
! TTTCGTGTTATAATACTTCT+TGG - chr3_1:87024015-87024034 None:intergenic 25.0%
! AAGTATTATAACACGAAAGA+GGG + chr3_1:87024017-87024036 Msa0383960:three_prime_UTR 25.0%
! AGAAATATGAGAAAGAACAA+GGG - chr3_1:87024124-87024143 None:intergenic 25.0%
!! TCTCATATTTCTGAAAGAAA+TGG + chr3_1:87024132-87024151 Msa0383960:three_prime_UTR 25.0%
!! CTCATATTTCTGAAAGAAAT+GGG + chr3_1:87024133-87024152 Msa0383960:three_prime_UTR 25.0%
!! ATTCTGAAACAACCAAACTT+GGG - chr3_1:87019626-87019645 None:intergenic 30.0%
CACTTGATCATTATGGTTAA+TGG + chr3_1:87019719-87019738 Msa0383960:CDS 30.0%
ATTATGGTTAATGGTCTCAT+TGG + chr3_1:87019728-87019747 Msa0383960:CDS 30.0%
TAAAGGAAGAAAAAGAAGGA+AGG - chr3_1:87019959-87019978 None:intergenic 30.0%
GGTATAAAGGAAGAAAAAGA+AGG - chr3_1:87019963-87019982 None:intergenic 30.0%
ACTAATGCAATGCATAATGT+TGG + chr3_1:87020087-87020106 Msa0383960:intron 30.0%
! TATATGCCCCAAAATTTGTT+GGG - chr3_1:87020227-87020246 None:intergenic 30.0%
TCAAGGCTAAATATTAATCG+TGG - chr3_1:87020444-87020463 None:intergenic 30.0%
!!! GATTTTTTTTACAGTTAGCG+AGG + chr3_1:87020665-87020684 Msa0383960:intron 30.0%
!!! CTTGTCTCTGAGATTTATTT+TGG + chr3_1:87020693-87020712 Msa0383960:intron 30.0%
TCTTCAACATTGACATTTGA+CGG + chr3_1:87020815-87020834 Msa0383960:CDS 30.0%
TAACTGATATAACCTGAGAA+AGG - chr3_1:87021055-87021074 None:intergenic 30.0%
! ATGAAATTTTCCGAACACTT+GGG - chr3_1:87021088-87021107 None:intergenic 30.0%
! AATGAAATTTTCCGAACACT+TGG - chr3_1:87021089-87021108 None:intergenic 30.0%
TTTATAGCTCATTCTTTAGG+TGG + chr3_1:87021107-87021126 Msa0383960:intron 30.0%
AATATCTCTCTCATAAAGCT+TGG - chr3_1:87021156-87021175 None:intergenic 30.0%
! TATTTCTAAGGAACTATCTC+AGG + chr3_1:87021172-87021191 Msa0383960:CDS 30.0%
! ATTTCTAAGGAACTATCTCA+GGG + chr3_1:87021173-87021192 Msa0383960:CDS 30.0%
TCTAACATGACATTCTTGAT+TGG - chr3_1:87021225-87021244 None:intergenic 30.0%
GTTATTGGGGGTAATTAAAT+AGG + chr3_1:87021472-87021491 Msa0383960:intron 30.0%
TATGTCATACTAATCTGTGT+TGG + chr3_1:87021526-87021545 Msa0383960:intron 30.0%
! AAAGCTTCATAACATGGTTT+TGG + chr3_1:87021551-87021570 Msa0383960:intron 30.0%
! TTTGGAACTTCACATACTTT+AGG + chr3_1:87021569-87021588 Msa0383960:intron 30.0%
!!! AAGCACCTATTTTTAACTGA+TGG + chr3_1:87021666-87021685 Msa0383960:CDS 30.0%
!! TGATTTTCACAACTTGCTTA+TGG + chr3_1:87021776-87021795 Msa0383960:intron 30.0%
GTCATAACGAATATTTGCAT+AGG - chr3_1:87021885-87021904 None:intergenic 30.0%
TACAGACAGTGGAATTTAAT+TGG - chr3_1:87021952-87021971 None:intergenic 30.0%
!!! TCTCGTGTCTTTTAAAATGT+CGG - chr3_1:87022138-87022157 None:intergenic 30.0%
TTCTCACATGTTAACAAAGT+GGG - chr3_1:87022340-87022359 None:intergenic 30.0%
TTTCTCACATGTTAACAAAG+TGG - chr3_1:87022341-87022360 None:intergenic 30.0%
! ATACTTTTGCGAGATCAAAT+GGG + chr3_1:87022396-87022415 Msa0383960:intron 30.0%
!! TTTTTCCACTTTTGCTTTCA+TGG - chr3_1:87022422-87022441 None:intergenic 30.0%
TAAAGGGAGAAAATGTTCTA+AGG + chr3_1:87022609-87022628 Msa0383960:intron 30.0%
!! AAATGTTCTAAGGTCTAGTT+TGG + chr3_1:87022619-87022638 Msa0383960:intron 30.0%
AAAAGTCCAAATGAGCTTAT+AGG + chr3_1:87022713-87022732 Msa0383960:intron 30.0%
!!! CCGTTGAACTTTTTTTTTAG+AGG - chr3_1:87022896-87022915 None:intergenic 30.0%
ACATCACACCACTATTATAA+GGG - chr3_1:87022924-87022943 None:intergenic 30.0%
! TTTTCCAATTCAAGGAACAT+GGG - chr3_1:87023112-87023131 None:intergenic 30.0%
TCAAGGTTCTTAATCATTAG+AGG - chr3_1:87023169-87023188 None:intergenic 30.0%
!! AATTACATTGTTTCTGCCTT+TGG + chr3_1:87023229-87023248 Msa0383960:intron 30.0%
GTGAAAATATAGTGCATGTT+TGG + chr3_1:87023448-87023467 Msa0383960:intron 30.0%
CAATGCTTGGATTATATTTC+AGG + chr3_1:87023688-87023707 Msa0383960:intron 30.0%
!!! CTTTTTTGTGTACAATGAAG+GGG - chr3_1:87023953-87023972 None:intergenic 30.0%
ACACAAAAAAGATTTGCCAT+TGG + chr3_1:87023962-87023981 Msa0383960:three_prime_UTR 30.0%
!!! ATACCTTTTTCAACTTCCAA+TGG - chr3_1:87023981-87024000 None:intergenic 30.0%
! TTGGAAGTTGAAAAAGGTAT+AGG + chr3_1:87023981-87024000 Msa0383960:three_prime_UTR 30.0%
! GAAGTATTATAACACGAAAG+AGG + chr3_1:87024016-87024035 Msa0383960:three_prime_UTR 30.0%
TAAATTGATGAATACCACAG+AGG + chr3_1:87024045-87024064 Msa0383960:three_prime_UTR 30.0%
TTTATGCTACCTATTCTACA+CGG + chr3_1:87024073-87024092 Msa0383960:three_prime_UTR 30.0%
CAGAAATATGAGAAAGAACA+AGG - chr3_1:87024125-87024144 None:intergenic 30.0%
AAGTTGAAATTCCCCAAGTT+TGG + chr3_1:87019611-87019630 Msa0383960:CDS 35.0%
!! TTCTGAAACAACCAAACTTG+GGG - chr3_1:87019625-87019644 None:intergenic 35.0%
!! GATTCTGAAACAACCAAACT+TGG - chr3_1:87019627-87019646 None:intergenic 35.0%
AGAATCCAACATGATGCTAA+AGG + chr3_1:87019641-87019660 Msa0383960:CDS 35.0%
GAATCCAACATGATGCTAAA+GGG + chr3_1:87019642-87019661 Msa0383960:CDS 35.0%
AATCCAACATGATGCTAAAG+GGG + chr3_1:87019643-87019662 Msa0383960:CDS 35.0%
ATTGAAGTTGTTGATGCTTC+TGG + chr3_1:87019677-87019696 Msa0383960:CDS 35.0%
CCATAATGATCAAGTGAGTA+GGG - chr3_1:87019715-87019734 None:intergenic 35.0%
ACCATAATGATCAAGTGAGT+AGG - chr3_1:87019716-87019735 None:intergenic 35.0%
TGTATTGCAGTGCTCATAAT+TGG + chr3_1:87019856-87019875 Msa0383960:intron 35.0%
CTGCAAAGCAATTTCTCAAA+AGG + chr3_1:87019886-87019905 Msa0383960:CDS 35.0%
!! AGGAAGGTGTTAGGATTTAA+GGG - chr3_1:87019943-87019962 None:intergenic 35.0%
!! AAGGAAGGTGTTAGGATTTA+AGG - chr3_1:87019944-87019963 None:intergenic 35.0%
!! AGAAAAAGAAGGAAGGTGTT+AGG - chr3_1:87019952-87019971 None:intergenic 35.0%
! TTGTGGTCCCAACAAATTTT+GGG + chr3_1:87020217-87020236 Msa0383960:intron 35.0%
CTATATGCCCCAAAATTTGT+TGG - chr3_1:87020228-87020247 None:intergenic 35.0%
TATTACAAAGGGTGAAACCT+TGG + chr3_1:87020270-87020289 Msa0383960:intron 35.0%
GATGCAAAAACTCCAAATTC+TGG - chr3_1:87020422-87020441 None:intergenic 35.0%
!! ATTTGACGGTGTTGATGTAA+CGG + chr3_1:87020829-87020848 Msa0383960:CDS 35.0%
TTTGAATCTGTGTCTGTCTT+AGG + chr3_1:87020965-87020984 Msa0383960:intron 35.0%
!!! TTTTTTCCATCTCCTTTCTC+AGG + chr3_1:87021040-87021059 Msa0383960:intron 35.0%
ATATAACCTGAGAAAGGAGA+TGG - chr3_1:87021049-87021068 None:intergenic 35.0%
! TTTCTAAGGAACTATCTCAG+GGG + chr3_1:87021174-87021193 Msa0383960:CDS 35.0%
AGTGTAATCAGCCATAGTAA+AGG - chr3_1:87021439-87021458 None:intergenic 35.0%
TGCTACAAGTGATGGTTATT+GGG + chr3_1:87021458-87021477 Msa0383960:intron 35.0%
TTGGTGAAAGCTTCATAACA+TGG + chr3_1:87021545-87021564 Msa0383960:intron 35.0%
! CTTTAGGTACCTTTGTTATG+TGG + chr3_1:87021585-87021604 Msa0383960:intron 35.0%
GAGTGAAATCCACATAACAA+AGG - chr3_1:87021597-87021616 None:intergenic 35.0%
GTTATGTGGATTTCACTCTT+TGG + chr3_1:87021599-87021618 Msa0383960:CDS 35.0%
TCATGTAAACTTACAGACAG+TGG - chr3_1:87021963-87021982 None:intergenic 35.0%
GTCTCTACATTTACAATGTG+TGG - chr3_1:87022166-87022185 None:intergenic 35.0%
CTACTAACATTGGATTCACT+TGG - chr3_1:87022223-87022242 None:intergenic 35.0%
AGTGAATCCAATGTTAGTAG+TGG + chr3_1:87022223-87022242 Msa0383960:CDS 35.0%
! ACCTTCGAAGTCAATTTTAC+CGG - chr3_1:87022251-87022270 None:intergenic 35.0%
! AGTGCTTATCTTTTGAGCTT+TGG - chr3_1:87022371-87022390 None:intergenic 35.0%
! CATACTTTTGCGAGATCAAA+TGG + chr3_1:87022395-87022414 Msa0383960:intron 35.0%
! TCAGTTGTCTTTTTCTCTTG+AGG + chr3_1:87022540-87022559 Msa0383960:intron 35.0%
! CAGTTGTCTTTTTCTCTTGA+GGG + chr3_1:87022541-87022560 Msa0383960:intron 35.0%
TGAACACCTATAAGCTCATT+TGG - chr3_1:87022722-87022741 None:intergenic 35.0%
CACATCACACCACTATTATA+AGG - chr3_1:87022925-87022944 None:intergenic 35.0%
CTTATAATAGTGGTGTGATG+TGG + chr3_1:87022923-87022942 Msa0383960:intron 35.0%
! CTTTTCCAATTCAAGGAACA+TGG - chr3_1:87023113-87023132 None:intergenic 35.0%
!! ATTATGCAGGCTTGTTTTCA+AGG - chr3_1:87023186-87023205 None:intergenic 35.0%
AATTCTCCATCTTCAACCAA+AGG - chr3_1:87023248-87023267 None:intergenic 35.0%
GAAAATCGTCAATCATGTGT+TGG - chr3_1:87023754-87023773 None:intergenic 35.0%
TTGTTAGAAGGGGGTAATAT+AGG - chr3_1:87023791-87023810 None:intergenic 35.0%
ATTACCCCCTTCTAACAAAT+AGG + chr3_1:87023793-87023812 Msa0383960:three_prime_UTR 35.0%
TTACCCCCTTCTAACAAATA+GGG + chr3_1:87023794-87023813 Msa0383960:three_prime_UTR 35.0%
! TTACCCTATTTGTTAGAAGG+GGG - chr3_1:87023800-87023819 None:intergenic 35.0%
! CTTACCCTATTTGTTAGAAG+GGG - chr3_1:87023801-87023820 None:intergenic 35.0%
! CCTTACCCTATTTGTTAGAA+GGG - chr3_1:87023802-87023821 None:intergenic 35.0%
!! TTTATCTTTTCAAGGGGAGA+CGG + chr3_1:87023829-87023848 Msa0383960:three_prime_UTR 35.0%
TTGCCATTGGAAGTTGAAAA+AGG + chr3_1:87023975-87023994 Msa0383960:three_prime_UTR 35.0%
ATTATGCAACCGTGTAGAAT+AGG - chr3_1:87024085-87024104 None:intergenic 35.0%
TTCTACACGGTTGCATAATT+AGG + chr3_1:87024086-87024105 Msa0383960:three_prime_UTR 35.0%
TCTGAAAGAAATGGGAAGAA+TGG + chr3_1:87024141-87024160 Msa0383960:three_prime_UTR 35.0%
ACAACGCTATGTTGAACCTT+GGG - chr3_1:87019545-87019564 None:intergenic 40.0%
AACAACGCTATGTTGAACCT+TGG - chr3_1:87019546-87019565 None:intergenic 40.0%
CCCTACTCACTTGATCATTA+TGG + chr3_1:87019712-87019731 Msa0383960:CDS 40.0%
ACATAGAGACAGGTGAAACT+AGG - chr3_1:87020196-87020215 None:intergenic 40.0%
! CTTGTGGTCCCAACAAATTT+TGG + chr3_1:87020216-87020235 Msa0383960:intron 40.0%
! TGTGGTCCCAACAAATTTTG+GGG + chr3_1:87020218-87020237 Msa0383960:intron 40.0%
GCAATGACTAGGTGTTTGTT+TGG - chr3_1:87020594-87020613 None:intergenic 40.0%
!!! TGCATTGCTATTTTGCATGC+AGG + chr3_1:87020779-87020798 Msa0383960:intron 40.0%
!! TTTGACGGTGTTGATGTAAC+GGG + chr3_1:87020830-87020849 Msa0383960:CDS 40.0%
AACGGGAAATAGATTAGCAG+AGG + chr3_1:87020847-87020866 Msa0383960:CDS 40.0%
ATTGCACTCGCAGTTCATAT+TGG + chr3_1:87020917-87020936 Msa0383960:intron 40.0%
! AAATTTTCCGAACACTTGGG+TGG - chr3_1:87021085-87021104 None:intergenic 40.0%
TGAAGGAAAAATTGCAGGAC+TGG + chr3_1:87021250-87021269 Msa0383960:CDS 40.0%
GCATAAGCAGGTAATTCTCT+TGG + chr3_1:87021322-87021341 Msa0383960:intron 40.0%
GATTACACTGCTACAAGTGA+TGG + chr3_1:87021450-87021469 Msa0383960:intron 40.0%
CTGCTACAAGTGATGGTTAT+TGG + chr3_1:87021457-87021476 Msa0383960:intron 40.0%
GCTACAAGTGATGGTTATTG+GGG + chr3_1:87021459-87021478 Msa0383960:intron 40.0%
CTACAAGTGATGGTTATTGG+GGG + chr3_1:87021460-87021479 Msa0383960:intron 40.0%
AAACAGCATCTCGTCTTTCA+CGG + chr3_1:87021625-87021644 Msa0383960:CDS 40.0%
TCACGGTTTCTTGGTAAAAC+AGG + chr3_1:87021642-87021661 Msa0383960:CDS 40.0%
TTCTCTTCAGGTCTGCTTTA+CGG + chr3_1:87021840-87021859 Msa0383960:intron 40.0%
GACTCCTAAATAGAGCTAGT+TGG + chr3_1:87021990-87022009 Msa0383960:intron 40.0%
!! CCATCCAACTAGCTCTATTT+AGG - chr3_1:87021997-87022016 None:intergenic 40.0%
CCTAAATAGAGCTAGTTGGA+TGG + chr3_1:87021994-87022013 Msa0383960:intron 40.0%
GATGGAGCACATCATCTATA+AGG + chr3_1:87022012-87022031 Msa0383960:CDS 40.0%
! TGAGTTTTACGGTCTACCTT+TGG - chr3_1:87022053-87022072 None:intergenic 40.0%
! ATCACGGTGCATGAGTTTTA+CGG - chr3_1:87022064-87022083 None:intergenic 40.0%
!! TCCAATGTTAGTAGTGGATC+CGG + chr3_1:87022229-87022248 Msa0383960:CDS 40.0%
! TCCGGTAAAATTGACTTCGA+AGG + chr3_1:87022247-87022266 Msa0383960:CDS 40.0%
CGGACATACCCTTATAATAG+TGG + chr3_1:87022913-87022932 Msa0383960:intron 40.0%
! AGTGAATTTTCATCGGACGT+TGG + chr3_1:87022952-87022971 Msa0383960:intron 40.0%
TTACACACCAAGGTGTAATG+TGG + chr3_1:87023065-87023084 Msa0383960:intron 40.0%
TTGACCCATGTTCCTTGAAT+TGG + chr3_1:87023105-87023124 Msa0383960:intron 40.0%
ATCATTAGAGGATACACACG+AGG - chr3_1:87023157-87023176 None:intergenic 40.0%
GCAGATAATGTGCATTATGC+AGG - chr3_1:87023199-87023218 None:intergenic 40.0%
TTTCTGCCTTTGGTTGAAGA+TGG + chr3_1:87023239-87023258 Msa0383960:intron 40.0%
AGGCCTAACAACAGTGAATT+GGG + chr3_1:87023344-87023363 Msa0383960:CDS 40.0%
GATCCCAATTCACTGTTGTT+AGG - chr3_1:87023350-87023369 None:intergenic 40.0%
TCTCGCACATAATGCAATTC+AGG + chr3_1:87023407-87023426 Msa0383960:CDS 40.0%
CAGTGAATGAAATCATTGCG+TGG + chr3_1:87023476-87023495 Msa0383960:intron 40.0%
! CATTGATGACTCAAGCATGA+TGG - chr3_1:87023575-87023594 None:intergenic 40.0%
ACCTACCGAATTAATTCCGA+CGG + chr3_1:87023716-87023735 Msa0383960:CDS 40.0%
CTACTCCGTCGGAATTAATT+CGG - chr3_1:87023724-87023743 None:intergenic 40.0%
CCCTTCTAACAAATAGGGTA+AGG + chr3_1:87023799-87023818 Msa0383960:three_prime_UTR 40.0%
! GCCTTACCCTATTTGTTAGA+AGG - chr3_1:87023803-87023822 None:intergenic 40.0%
!! TTATCTTTTCAAGGGGAGAC+GGG + chr3_1:87023830-87023849 Msa0383960:three_prime_UTR 40.0%
TACAAAGTGGCGAAGTAAGT+TGG - chr3_1:87023880-87023899 None:intergenic 40.0%
ATTATAACACGAAAGAGGGC+AGG + chr3_1:87024021-87024040 Msa0383960:three_prime_UTR 40.0%
!! TAGCATAAAAGCATCCTCTG+TGG - chr3_1:87024062-87024081 None:intergenic 40.0%
GGAATCACAACAGATACCCA+AGG + chr3_1:87019526-87019545 Msa0383960:CDS 45.0%
CATCCCCTTTAGCATCATGT+TGG - chr3_1:87019649-87019668 None:intergenic 45.0%
CAACATGATGCTAAAGGGGA+TGG + chr3_1:87019647-87019666 Msa0383960:CDS 45.0%
TGGTTAATGGTCTCATTGGC+AGG + chr3_1:87019732-87019751 Msa0383960:CDS 45.0%
TCACCTGTCTCTATGTCTTG+TGG + chr3_1:87020200-87020219 Msa0383960:intron 45.0%
TGGGGCATATAGTTCTTGCT+TGG + chr3_1:87020236-87020255 Msa0383960:intron 45.0%
TTGGTTGGCAAGTGTATGCT+TGG + chr3_1:87020301-87020320 Msa0383960:intron 45.0%
GGGAAATAGATTAGCAGAGG+AGG + chr3_1:87020850-87020869 Msa0383960:CDS 45.0%
! GAGGAGGTGTGTGATTTCTT+TGG + chr3_1:87020866-87020885 Msa0383960:intron 45.0%
TAAAACGCCACCCAAGTGTT+CGG + chr3_1:87021075-87021094 Msa0383960:intron 45.0%
! CTTTAGGTGGCTTGATAGCA+AGG + chr3_1:87021120-87021139 Msa0383960:intron 45.0%
TCTCGTCTTTCACGGTTTCT+TGG + chr3_1:87021633-87021652 Msa0383960:CDS 45.0%
! TGGAACTTCCTCTGGAAGAA+CGG - chr3_1:87022203-87022222 None:intergenic 45.0%
GATTCACTTGGAACTTCCTC+TGG - chr3_1:87022211-87022230 None:intergenic 45.0%
ACCGGATCCACTACTAACAT+TGG - chr3_1:87022233-87022252 None:intergenic 45.0%
ATGGGCCATGAAAGCAAAAG+TGG + chr3_1:87022414-87022433 Msa0383960:intron 45.0%
!! AGAGGTACCACATTACACCT+TGG - chr3_1:87023075-87023094 None:intergenic 45.0%
AAGGTGTAATGTGGTACCTC+TGG + chr3_1:87023074-87023093 Msa0383960:intron 45.0%
AGGTGTAATGTGGTACCTCT+GGG + chr3_1:87023075-87023094 Msa0383960:intron 45.0%
AGTGATGACAATACTCGCAG+AGG + chr3_1:87023311-87023330 Msa0383960:intron 45.0%
GAGGCCTAACAACAGTGAAT+TGG + chr3_1:87023343-87023362 Msa0383960:CDS 45.0%
TAATAGCCTGCTCTCATCTC+TGG + chr3_1:87023626-87023645 Msa0383960:intron 45.0%
TCCGTCGGAATTAATTCGGT+AGG - chr3_1:87023720-87023739 None:intergenic 45.0%
TAATTCCGACGGAGTAGATG+TGG + chr3_1:87023727-87023746 Msa0383960:CDS 45.0%
GGGAATATGCACAAACAACC+CGG - chr3_1:87023856-87023875 None:intergenic 45.0%
!! AAGTGGCGAAGTAAGTTGGT+GGG - chr3_1:87023876-87023895 None:intergenic 45.0%
! AAAGTGGCGAAGTAAGTTGG+TGG - chr3_1:87023877-87023896 None:intergenic 45.0%
! CTTACTTCGCCACTTTGTAG+TGG + chr3_1:87023881-87023900 Msa0383960:three_prime_UTR 45.0%
GGACCACAAGACATAGAGAC+AGG - chr3_1:87020206-87020225 None:intergenic 50.0%
!! TGAAACCTTGGTGCTGTGGT+TGG + chr3_1:87020282-87020301 Msa0383960:intron 50.0%
GCTTATGCCCTCTACAACCA+AGG - chr3_1:87021310-87021329 None:intergenic 50.0%
! TGGTTGTAGAGGGCATAAGC+AGG + chr3_1:87021310-87021329 Msa0383960:CDS 50.0%
ACCTCCTCTTCTTCTCCAGA+TGG + chr3_1:87021701-87021720 Msa0383960:CDS 50.0%
ACCATCTGGAGAAGAAGAGG+AGG - chr3_1:87021705-87021724 None:intergenic 50.0%
CGAACCATCTGGAGAAGAAG+AGG - chr3_1:87021708-87021727 None:intergenic 50.0%
ATAGGCAACGCGACGTTTGA+AGG - chr3_1:87021867-87021886 None:intergenic 50.0%
GCGTAGAAACGAGCTTCCAA+AGG + chr3_1:87022034-87022053 Msa0383960:CDS 50.0%
! TCCTCTGGAAGAACGGAAGT+GGG - chr3_1:87022196-87022215 None:intergenic 50.0%
! TTCCTCTGGAAGAACGGAAG+TGG - chr3_1:87022197-87022216 None:intergenic 50.0%
GGTGTAATGTGGTACCTCTG+GGG + chr3_1:87023076-87023095 Msa0383960:intron 50.0%
GTGTAATGTGGTACCTCTGG+GGG + chr3_1:87023077-87023096 Msa0383960:intron 50.0%
TGGGTCAAATATTCCCCCAG+AGG - chr3_1:87023093-87023112 None:intergenic 50.0%
CTCGCAGAGGAAATGATCAG+AGG + chr3_1:87023324-87023343 Msa0383960:intron 50.0%
CGAATTGACGTCAGCTTCAG+TGG + chr3_1:87023369-87023388 Msa0383960:CDS 50.0%
ACGTCAGCTTCAGTGGTAGT+AGG + chr3_1:87023376-87023395 Msa0383960:CDS 50.0%
AAGATGCCAGAGATGAGAGC+AGG - chr3_1:87023635-87023654 None:intergenic 50.0%
TTGGACCACATCTACTCCGT+CGG - chr3_1:87023735-87023754 None:intergenic 50.0%
!! AGGGTGAAACCTTGGTGCTG+TGG + chr3_1:87020278-87020297 Msa0383960:intron 55.0%
!! ACCTTGGTGCTGTGGTTGGT+TGG + chr3_1:87020286-87020305 Msa0383960:intron 55.0%
TGCCCTCTACAACCAAGGTG+CGG - chr3_1:87021305-87021324 None:intergenic 55.0%
CTTCGGAGTCACGAACCATC+TGG - chr3_1:87021719-87021738 None:intergenic 55.0%
ACCCACTTCCGTTCTTCCAG+AGG + chr3_1:87022192-87022211 Msa0383960:CDS 55.0%
! TTCGCCACTTTGTAGTGGCG+AGG + chr3_1:87023886-87023905 Msa0383960:three_prime_UTR 55.0%
! TCGCCACTTTGTAGTGGCGA+GGG + chr3_1:87023887-87023906 Msa0383960:three_prime_UTR 55.0%
AACCCCTCGCCACTACAAAG+TGG - chr3_1:87023893-87023912 None:intergenic 55.0%
GCCAACCAACCACAGCACCA+AGG - chr3_1:87020290-87020309 None:intergenic 60.0%
ACGCCGCACCTTGGTTGTAG+AGG + chr3_1:87021299-87021318 Msa0383960:CDS 60.0%
CGCCGCACCTTGGTTGTAGA+GGG + chr3_1:87021300-87021319 Msa0383960:CDS 60.0%
!! CTTTTCAAGGGGAGACGGGC+CGG + chr3_1:87023834-87023853 Msa0383960:three_prime_UTR 60.0%
!! TTTTCAAGGGGAGACGGGCC+GGG + chr3_1:87023835-87023854 Msa0383960:three_prime_UTR 60.0%
! CGCCACTTTGTAGTGGCGAG+GGG + chr3_1:87023888-87023907 Msa0383960:three_prime_UTR 60.0%
ACGTCTGCAACGCCGCACCT+TGG + chr3_1:87021290-87021309 Msa0383960:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 87019524 87024212 87019524 ID=Msa0383960;Name=Msa0383960
chr3_1 mRNA 87019524 87024212 87019524 ID=Msa0383960-mRNA-1;Parent=Msa0383960;Name=Msa0383960-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.9|0.72|1|0.8|0.81|11|431|392
chr3_1 exon 87019524 87019753 87019524 ID=Msa0383960-mRNA-1:exon:23175;Parent=Msa0383960-mRNA-1
chr3_1 exon 87019866 87019933 87019866 ID=Msa0383960-mRNA-1:exon:23176;Parent=Msa0383960-mRNA-1
chr3_1 exon 87020801 87020871 87020801 ID=Msa0383960-mRNA-1:exon:23177;Parent=Msa0383960-mRNA-1
chr3_1 exon 87021062 87021089 87021062 ID=Msa0383960-mRNA-1:exon:23178;Parent=Msa0383960-mRNA-1
chr3_1 exon 87021126 87021331 87021126 ID=Msa0383960-mRNA-1:exon:23179;Parent=Msa0383960-mRNA-1
chr3_1 exon 87021591 87021751 87021591 ID=Msa0383960-mRNA-1:exon:23180;Parent=Msa0383960-mRNA-1
chr3_1 exon 87021850 87021905 87021850 ID=Msa0383960-mRNA-1:exon:23181;Parent=Msa0383960-mRNA-1
chr3_1 exon 87022003 87022055 87022003 ID=Msa0383960-mRNA-1:exon:23182;Parent=Msa0383960-mRNA-1
chr3_1 exon 87022133 87022268 87022133 ID=Msa0383960-mRNA-1:exon:23183;Parent=Msa0383960-mRNA-1
chr3_1 exon 87023331 87023428 87023331 ID=Msa0383960-mRNA-1:exon:23184;Parent=Msa0383960-mRNA-1
chr3_1 exon 87023710 87024212 87023710 ID=Msa0383960-mRNA-1:exon:23185;Parent=Msa0383960-mRNA-1
chr3_1 CDS 87019524 87019753 87019524 ID=Msa0383960-mRNA-1:cds;Parent=Msa0383960-mRNA-1
chr3_1 CDS 87019866 87019933 87019866 ID=Msa0383960-mRNA-1:cds;Parent=Msa0383960-mRNA-1
chr3_1 CDS 87020801 87020871 87020801 ID=Msa0383960-mRNA-1:cds;Parent=Msa0383960-mRNA-1
chr3_1 CDS 87021062 87021089 87021062 ID=Msa0383960-mRNA-1:cds;Parent=Msa0383960-mRNA-1
chr3_1 CDS 87021126 87021331 87021126 ID=Msa0383960-mRNA-1:cds;Parent=Msa0383960-mRNA-1
chr3_1 CDS 87021591 87021751 87021591 ID=Msa0383960-mRNA-1:cds;Parent=Msa0383960-mRNA-1
chr3_1 CDS 87021850 87021905 87021850 ID=Msa0383960-mRNA-1:cds;Parent=Msa0383960-mRNA-1
chr3_1 CDS 87022003 87022055 87022003 ID=Msa0383960-mRNA-1:cds;Parent=Msa0383960-mRNA-1
chr3_1 CDS 87022133 87022268 87022133 ID=Msa0383960-mRNA-1:cds;Parent=Msa0383960-mRNA-1
chr3_1 CDS 87023331 87023428 87023331 ID=Msa0383960-mRNA-1:cds;Parent=Msa0383960-mRNA-1
chr3_1 CDS 87023710 87023781 87023710 ID=Msa0383960-mRNA-1:cds;Parent=Msa0383960-mRNA-1
chr3_1 three_prime_UTR 87023782 87024212 87023782 ID=Msa0383960-mRNA-1:three_prime_utr;Parent=Msa0383960-mRNA-1
Gene Sequence

>Msa0383960

ATGGAATCACAACAGATACCCAAGGTTCAACATAGCGTTGTTGATGTACAGATCAACAACAATAACAATAAGAAGAATAAGAATAAGAAGTTGAAATTCCCCAAGTTTGGTTGTTTCAGAATCCAACATGATGCTAAAGGGGATGGTTTTGATATTGAAGTTGTTGATGCTTCTGGTCATCGTTCTAACCCTACTCACTTGATCATTATGGTTAATGGTCTCATTGGCAGTGCTCATAATTGGAAATATGCTGCAAAGCAATTTCTCAAAAGGTACCCCTATGATGTTATTGTACATTGCAGTGAATGTAATTCTTCAACATTGACATTTGACGGTGTTGATGTAACGGGAAATAGATTAGCAGAGGAGGTTATATCAGTTATAAAACGCCACCCAAGTGGCTTGATAGCAAGGTATGCAATAGCCAAGCTTTATGAGAGAGATATTTCTAAGGAACTATCTCAGGGGAATGTACATTGTGAGAGTCAGATTTCCAATCAAGAATGTCATGTTAGAAAATATGAAGGAAAAATTGCAGGACTGGAGCCTATTAATTTTATTACGTCTGCAACGCCGCACCTTGGTTGTAGAGGGCATAAGCAGGTACCTTTGTTATGTGGATTTCACTCTTTGGAGAAAACAGCATCTCGTCTTTCACGGTTTCTTGGTAAAACAGGAAAGCACCTATTTTTAACTGATGGTAAGAATGAAAAACCTCCTCTTCTTCTCCAGATGGTTCGTGACTCCGAAGATATTAAATTCATGTCTGCTTTACGGTCCTTCAAACGTCGCGTTGCCTATGCAAATATTCGTTATGACCAGCTAGTTGGATGGAGCACATCATCTATAAGGCGTAGAAACGAGCTTCCAAAGAGCCGACATTTTAAAAGACACGAGAAATATCCACACATTGTAAATGTAGAGACAACAAAACCCACTTCCGTTCTTCCAGAGGAAGTTCCAAGTGAATCCAATGTTAGTAGTGGATCCGGTAAAATTGACTTCGAAGAGGAAATGATCAGAGGCCTAACAACAGTGAATTGGGATCGAATTGACGTCAGCTTCAGTGGTAGTAGGCAAAAATATCTCGCACATAATGCAATTCAGGTTCAAACCTACCGAATTAATTCCGACGGAGTAGATGTGGTCCAACACATGATTGACGATTTTCAGTTATAG

Protein sequence

>Msa0383960

MESQQIPKVQHSVVDVQINNNNNKKNKNKKLKFPKFGCFRIQHDAKGDGFDIEVVDASGHRSNPTHLIIMVNGLIGSAHNWKYAAKQFLKRYPYDVIVHCSECNSSTLTFDGVDVTGNRLAEEVISVIKRHPSGLIARYAIAKLYERDISKELSQGNVHCESQISNQECHVRKYEGKIAGLEPINFITSATPHLGCRGHKQVPLLCGFHSLEKTASRLSRFLGKTGKHLFLTDGKNEKPPLLLQMVRDSEDIKFMSALRSFKRRVAYANIRYDQLVGWSTSSIRRRNELPKSRHFKRHEKYPHIVNVETTKPTSVLPEEVPSESNVSSGSGKIDFEEEMIRGLTTVNWDRIDVSFSGSRQKYLAHNAIQVQTYRINSDGVDVVQHMIDDFQL*