AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1375330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1375330 MtrunA17_Chr8g0386941 90.722 582 39 3 1 577 1 572 0.0 1027
Msa1375330 MtrunA17_Chr7g0247821 30.000 160 106 3 424 577 753 912 3.00e-13 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 93 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTAACATGGACATTAAT+TGG 0.098262 tig0019653:+43238 None:intergenic
ACAAGCTGTTGTAATGTTAT+TGG 0.222383 tig0019653:+42313 None:intergenic
ACAACACATGCTTGGAAGTT+TGG 0.253601 tig0019653:+42400 None:intergenic
ACCTAAGACAAATGACTTAA+TGG 0.259882 tig0019653:+42068 None:intergenic
AAGCACATCTGAACCAATTC+TGG 0.268014 tig0019653:+44614 None:intergenic
GCCATTAAGTCATTTGTCTT+AGG 0.288201 tig0019653:-42069 Msa1375330:three_prime_UTR
TCCTTTGACTTGTTGTTCAT+TGG 0.294401 tig0019653:+42643 None:intergenic
TTTATCCAACTGCCTACTAT+TGG 0.307894 tig0019653:+44879 None:intergenic
CCATCAATAAGTTTGATAAA+TGG 0.309576 tig0019653:+42563 None:intergenic
ACTATAACCTCTTCTTCTTC+TGG 0.312350 tig0019653:+43852 None:intergenic
AGACCTTATAACATCCTCTT+TGG 0.324442 tig0019653:-42668 Msa1375330:CDS
TGTGGCATGGTTCTTACTAT+TGG 0.324521 tig0019653:-45042 None:intergenic
CCATTTATCAAACTTATTGA+TGG 0.332391 tig0019653:-42563 Msa1375330:CDS
GAATGATCGGATAGCAGATT+TGG 0.343186 tig0019653:-43809 Msa1375330:CDS
TTTGATAAATGGCTCTTCAT+AGG 0.348408 tig0019653:+42574 None:intergenic
TTCCAAGTCCTGCGAACTGC+TGG 0.360062 tig0019653:+43306 None:intergenic
TACTAACATGGACATTAATT+GGG 0.364399 tig0019653:+43239 None:intergenic
TCACCAAATGCAAAATTTGA+AGG 0.381999 tig0019653:+43415 None:intergenic
TAATCTTCGTGAGGCTCATT+CGG 0.396050 tig0019653:-44917 Msa1375330:CDS
TCCCAGCAGTTCGCAGGACT+TGG 0.403469 tig0019653:-43308 Msa1375330:CDS
AAATGTGAATGGCGAATGTT+TGG 0.414827 tig0019653:-44946 Msa1375330:CDS
CATCTCTATGAAGTGCTTTG+AGG 0.416519 tig0019653:+43077 None:intergenic
ATTACAACAGCTTGTTGAAA+GGG 0.423151 tig0019653:-42305 Msa1375330:CDS
CATTCTATTTCTATCTTCCA+TGG 0.427164 tig0019653:+42044 None:intergenic
GAACTGCTGGGAAATTTACT+TGG 0.433594 tig0019653:+43319 None:intergenic
TCAAAACTTACATCAACATC+AGG 0.435516 tig0019653:+44570 None:intergenic
GTATATCATCGAATGTTTCA+TGG 0.442276 tig0019653:-42470 Msa1375330:CDS
TTTCACACCTTGGTCCTTCA+CGG 0.447121 tig0019653:+43129 None:intergenic
GGCAATGGGAAATCCAGAAT+TGG 0.447724 tig0019653:-44627 Msa1375330:CDS
TCCATTCACTTCATCAAAAG+TGG 0.447779 tig0019653:+42531 None:intergenic
GATCCAAAGAGGATGTTATA+AGG 0.448481 tig0019653:+42665 None:intergenic
GTCATTTGTCTTAGGTTCCA+TGG 0.452543 tig0019653:-42061 Msa1375330:three_prime_UTR
TTGCAACTCATTACTAAAAG+TGG 0.454464 tig0019653:+42997 None:intergenic
TAAGACATGTCATGAGAGTA+AGG 0.458092 tig0019653:-43378 Msa1375330:CDS
ATGTGTTGTGAGGAAAGTTT+TGG 0.462231 tig0019653:-42386 Msa1375330:CDS
TAGAACATTAATCAATAACT+TGG 0.472348 tig0019653:-41788 Msa1375330:three_prime_UTR
CTTTCCTCACAACACATGCT+TGG 0.474299 tig0019653:+42392 None:intergenic
CTCAAAGCACTTCATAGAGA+TGG 0.475720 tig0019653:-43076 Msa1375330:CDS
TATCTTTCGATTGGAGAAAG+AGG 0.494534 tig0019653:+41875 None:intergenic
TCAAAGCACTTCATAGAGAT+GGG 0.495966 tig0019653:-43075 Msa1375330:CDS
GCAGTGCGGGACAACTGATT+CGG 0.510006 tig0019653:-43344 Msa1375330:CDS
CATTACAACAGCTTGTTGAA+AGG 0.512663 tig0019653:-42306 Msa1375330:CDS
CACTTTGCTGACACTAGCTC+TGG 0.514081 tig0019653:-43457 Msa1375330:CDS
TAAATTTCCCAGCAGTTCGC+AGG 0.515356 tig0019653:-43314 Msa1375330:CDS
TGGGTAGTTGCTCATGGTGG+TGG 0.521127 tig0019653:-42102 Msa1375330:three_prime_UTR
ATAATGTGCATGCAAATTGT+CGG 0.521272 tig0019653:+42931 None:intergenic
TGTTGTAATGTTATTGGTGA+TGG 0.522358 tig0019653:+42319 None:intergenic
CAATTTCTTCTGCATCAACA+TGG 0.524519 tig0019653:+42251 None:intergenic
ACTTGGCCAGACGTGAATCA+TGG 0.524559 tig0019653:-42282 Msa1375330:CDS
AGTCATCCATGATTCACGTC+TGG 0.529300 tig0019653:+42276 None:intergenic
GGAGAAAAGAACAGCAGTGC+GGG 0.535867 tig0019653:-43357 Msa1375330:CDS
GGTTTCCAATAGTAGGCAGT+TGG 0.538036 tig0019653:-44884 Msa1375330:CDS
TCCAAGTCCTGCGAACTGCT+GGG 0.538815 tig0019653:+43307 None:intergenic
ATCATAAATTTGATCACCGT+GGG 0.540757 tig0019653:-42121 Msa1375330:three_prime_UTR
ATGTTATAAGGTCTTCAAGA+TGG 0.541014 tig0019653:+42677 None:intergenic
GGCTCATTCGGATGGAAGAT+CGG 0.542039 tig0019653:-44905 Msa1375330:CDS
CTTCGTGAGGCTCATTCGGA+TGG 0.545723 tig0019653:-44913 Msa1375330:CDS
GAGATAAAACTTTCACACCT+TGG 0.547276 tig0019653:+43119 None:intergenic
GGACAGAAGATCTCCTCCTC+TGG 0.548594 tig0019653:-44977 Msa1375330:CDS
GAAGATCGGTTTCCAATAGT+AGG 0.549773 tig0019653:-44891 Msa1375330:CDS
ATTATTGAGAGTGATGCATA+TGG 0.552597 tig0019653:-41903 Msa1375330:three_prime_UTR
AGTTCGCAGGACTTGGAAGA+TGG 0.556294 tig0019653:-43301 Msa1375330:CDS
GCAAGATCCTAACTCTCTGT+TGG 0.561889 tig0019653:-43641 Msa1375330:CDS
ATCTTTCGATTGGAGAAAGA+GGG 0.568464 tig0019653:+41876 None:intergenic
AATGTTATTGGTGATGGATG+AGG 0.570884 tig0019653:+42325 None:intergenic
GTATGCTCCAGAAGAAGAAG+AGG 0.572437 tig0019653:-43859 Msa1375330:CDS
TGGAATCTTTAATCTTCGTG+AGG 0.576871 tig0019653:-44926 Msa1375330:CDS
TCCAATGAACAACAAGTCAA+AGG 0.581216 tig0019653:-42644 Msa1375330:CDS
GTTGTTCATTGGATCCAAAG+AGG 0.590616 tig0019653:+42654 None:intergenic
ACAGCTTGTTGAAAGGGACT+TGG 0.590760 tig0019653:-42299 Msa1375330:CDS
GCAAAATAAATTGACCGTGA+AGG 0.591471 tig0019653:-43143 Msa1375330:CDS
GTGTACGTGTGGAGAATGAT+CGG 0.594868 tig0019653:-43822 Msa1375330:CDS
GATGATATACTCATGCAAGA+TGG 0.600077 tig0019653:+42483 None:intergenic
ATGTTATTGGTGATGGATGA+GGG 0.600743 tig0019653:+42326 None:intergenic
TCACCGTGGGTAGTTGCTCA+TGG 0.602050 tig0019653:-42108 Msa1375330:three_prime_UTR
AGAAGAAATTGCAATGGAGG+TGG 0.605756 tig0019653:-42239 Msa1375330:CDS
ACTAACATGGACATTAATTG+GGG 0.615194 tig0019653:+43240 None:intergenic
TCATGGTGGTGGAGACCGCA+TGG 0.624096 tig0019653:-42091 Msa1375330:three_prime_UTR
ACTTCCAAGCATGTGTTGTG+AGG 0.626643 tig0019653:-42396 Msa1375330:CDS
CAAAACTTACATCAACATCA+GGG 0.632189 tig0019653:+44571 None:intergenic
AAATTGACCGTGAAGGACCA+AGG 0.639782 tig0019653:-43136 Msa1375330:CDS
TAGTTGTAAGAGTGTACGTG+TGG 0.641450 tig0019653:-43833 Msa1375330:CDS
AATCATAAATTTGATCACCG+TGG 0.641648 tig0019653:-42122 Msa1375330:three_prime_UTR
TGCAGAAGAAATTGCAATGG+AGG 0.645966 tig0019653:-42242 Msa1375330:CDS
TCATTACTAAAAGTGGCCAC+AGG 0.656006 tig0019653:+43004 None:intergenic
GCACATTATGATATTCCTAG+AGG 0.662018 tig0019653:-42917 Msa1375330:intron
CCACCATGAGCAACTACCCA+CGG 0.670027 tig0019653:+42105 None:intergenic
CAAAGCACTTCATAGAGATG+GGG 0.670872 tig0019653:-43074 Msa1375330:CDS
TGATGCAGAAGAAATTGCAA+TGG 0.674423 tig0019653:-42245 Msa1375330:CDS
CCGTGGGTAGTTGCTCATGG+TGG 0.710283 tig0019653:-42105 Msa1375330:three_prime_UTR
AGGAGAAAAGAACAGCAGTG+CGG 0.716182 tig0019653:-43358 Msa1375330:CDS
CAGTTGGATAAACACACCAG+TGG 0.724616 tig0019653:-44868 Msa1375330:intron
CAAATGACTTAATGGCCATG+CGG 0.729978 tig0019653:+42076 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGAAGAAAACTATTTTTTT+AGG + tig0019653:41789-41808 None:intergenic 15.0%
!! TATTATACTCATCTTAAATT+TGG - tig0019653:42115-42134 Msa1375330:three_prime_UTR 15.0%
!! TGTTAATAAATATCTAGAAA+GGG - tig0019653:42466-42485 Msa1375330:CDS 15.0%
!!! ATTTGTAACTATTTTTTTAG+AGG + tig0019653:43304-43323 None:intergenic 15.0%
!! AAAAAACTAGTTATATAATG+AGG + tig0019653:43903-43922 None:intergenic 15.0%
!!! AAAATAGTTTTCTTCAATCA+TGG - tig0019653:41792-41811 Msa1375330:three_prime_UTR 20.0%
!!! TTCTTCTTTTTTAGCTTAAA+AGG - tig0019653:41951-41970 Msa1375330:three_prime_UTR 20.0%
!!! TGAATCAAATTTTGATTTTC+TGG - tig0019653:42082-42101 Msa1375330:three_prime_UTR 20.0%
!!! GAATCAAATTTTGATTTTCT+GGG - tig0019653:42083-42102 Msa1375330:three_prime_UTR 20.0%
!! CTGTTAATAAATATCTAGAA+AGG - tig0019653:42465-42484 Msa1375330:CDS 20.0%
!! GTTAATAAATATCTAGAAAG+GGG - tig0019653:42467-42486 Msa1375330:CDS 20.0%
!! TACTATTGTATTATGGTTAA+TGG + tig0019653:42571-42590 None:intergenic 20.0%
!!! TTTAAAATGTCATGTATAGT+TGG - tig0019653:42813-42832 Msa1375330:intron 20.0%
!! TACTAAATCATTCATGTAAT+GGG + tig0019653:42879-42898 None:intergenic 20.0%
!! TGGTAAAAATGTAAAAAAGT+TGG - tig0019653:43509-43528 Msa1375330:CDS 20.0%
!! TATTGATCAATTCTTTAGTA+TGG - tig0019653:43977-43996 Msa1375330:intron 20.0%
!!! TAAATTATATGTTTTCTTGC+AGG - tig0019653:44042-44061 Msa1375330:intron 20.0%
!!! TTCTAAAAATATCTTTCGAT+TGG + tig0019653:44927-44946 None:intergenic 20.0%
!! TAGAACATTAATCAATAACT+TGG - tig0019653:45002-45021 Msa1375330:five_prime_UTR 20.0%
! CAAATGATATTTATGGTTAC+TGG + tig0019653:42048-42067 None:intergenic 25.0%
! ACAGCTTCAAATGATATTTA+TGG + tig0019653:42055-42074 None:intergenic 25.0%
! AAGGCAATACTATTGTATTA+TGG + tig0019653:42578-42597 None:intergenic 25.0%
!! ATAGCGAAGGTTTAAAATAT+CGG + tig0019653:42735-42754 None:intergenic 25.0%
! ACTAAATCATTCATGTAATG+GGG + tig0019653:42878-42897 None:intergenic 25.0%
! CTACTAAATCATTCATGTAA+TGG + tig0019653:42880-42899 None:intergenic 25.0%
!!! TTTTTCAACAAAAACTCTCA+AGG - tig0019653:43039-43058 Msa1375330:CDS 25.0%
!!! AAAACAGTAGTAGTTTTGAT+AGG - tig0019653:43247-43266 Msa1375330:CDS 25.0%
! TACTAACATGGACATTAATT+GGG + tig0019653:43554-43573 None:intergenic 25.0%
!!! AACTTTTTTCACTACTAACA+TGG + tig0019653:43566-43585 None:intergenic 25.0%
! CAATACATAGATGATAAATG+AGG + tig0019653:43962-43981 None:intergenic 25.0%
! CCATCAATAAGTTTGATAAA+TGG + tig0019653:44230-44249 None:intergenic 25.0%
! CCATTTATCAAACTTATTGA+TGG - tig0019653:44227-44246 Msa1375330:intron 25.0%
! GGATTTCTTGATGAAAAATA+GGG + tig0019653:44372-44391 None:intergenic 25.0%
! TGGATTTCTTGATGAAAAAT+AGG + tig0019653:44373-44392 None:intergenic 25.0%
TGGTTAACCAAAAATGTGAA+TGG - tig0019653:41833-41852 Msa1375330:three_prime_UTR 30.0%
! ACTCATCTTAAATTTGGAAC+TGG - tig0019653:42121-42140 Msa1375330:three_prime_UTR 30.0%
CAAAACTTACATCAACATCA+GGG + tig0019653:42222-42241 None:intergenic 30.0%
TCAAAACTTACATCAACATC+AGG + tig0019653:42223-42242 None:intergenic 30.0%
TTTGTAGCAGCTATTGTAAA+AGG - tig0019653:42269-42288 Msa1375330:CDS 30.0%
!!! TTAAACCCTTTTTAAAGCCT+CGG - tig0019653:42343-42362 Msa1375330:CDS 30.0%
AAATGTACTAACAACTCGAA+TGG + tig0019653:42438-42457 None:intergenic 30.0%
ACTACTTCAGTAACTTAGAA+AGG + tig0019653:42523-42542 None:intergenic 30.0%
! ATTTAGTAGCATAGCATTGA+TGG - tig0019653:42891-42910 Msa1375330:intron 30.0%
! TTGTCAGCCAAATCAATTTT+TGG - tig0019653:43077-43096 Msa1375330:CDS 30.0%
ACAGCATCCAAAAATTGATT+TGG + tig0019653:43087-43106 None:intergenic 30.0%
!! ACAGGTTTTATATTCGAACA+AGG - tig0019653:43107-43126 Msa1375330:CDS 30.0%
! AAGCCTTCAAATTTTGCATT+TGG - tig0019653:43372-43391 Msa1375330:CDS 30.0%
TCACCAAATGCAAAATTTGA+AGG + tig0019653:43378-43397 None:intergenic 30.0%
ACTAACATGGACATTAATTG+GGG + tig0019653:43553-43572 None:intergenic 30.0%
CTACTAACATGGACATTAAT+TGG + tig0019653:43555-43574 None:intergenic 30.0%
!!! TTTGAAGTTTTTCAAGCTGA+AGG - tig0019653:43584-43603 Msa1375330:CDS 30.0%
AAAAATCAAAGATTTGCCTG+TGG - tig0019653:43770-43789 Msa1375330:CDS 30.0%
TTGCAACTCATTACTAAAAG+TGG + tig0019653:43796-43815 None:intergenic 30.0%
! AGTAATGAGTTGCAAGTTTT+TGG - tig0019653:43801-43820 Msa1375330:CDS 30.0%
ATAATGTGCATGCAAATTGT+CGG + tig0019653:43862-43881 None:intergenic 30.0%
ATTCTTTAGTATGGTCTGAA+AGG - tig0019653:43986-44005 Msa1375330:intron 30.0%
ATGTTATAAGGTCTTCAAGA+TGG + tig0019653:44116-44135 None:intergenic 30.0%
TTTGATAAATGGCTCTTCAT+AGG + tig0019653:44219-44238 None:intergenic 30.0%
GTATATCATCGAATGTTTCA+TGG - tig0019653:44320-44339 Msa1375330:intron 30.0%
TGTTGTAATGTTATTGGTGA+TGG + tig0019653:44474-44493 None:intergenic 30.0%
ACAAGCTGTTGTAATGTTAT+TGG + tig0019653:44480-44499 None:intergenic 30.0%
!! ATTACAACAGCTTGTTGAAA+GGG - tig0019653:44485-44504 Msa1375330:intron 30.0%
!!! GAAAAATGTTTTGGAAACAC+TGG - tig0019653:44575-44594 Msa1375330:intron 30.0%
AATCATAAATTTGATCACCG+TGG - tig0019653:44668-44687 Msa1375330:intron 30.0%
ATCATAAATTTGATCACCGT+GGG - tig0019653:44669-44688 Msa1375330:intron 30.0%
ACCTAAGACAAATGACTTAA+TGG + tig0019653:44725-44744 None:intergenic 30.0%
!! CATTCTATTTCTATCTTCCA+TGG + tig0019653:44749-44768 None:intergenic 30.0%
ATTATTGAGAGTGATGCATA+TGG - tig0019653:44887-44906 Msa1375330:CDS 30.0%
!!! TCACATTTTTGGTTAACCAG+AGG + tig0019653:41832-41851 None:intergenic 35.0%
! ACATTCGCCATTCACATTTT+TGG + tig0019653:41843-41862 None:intergenic 35.0%
AAATGTGAATGGCGAATGTT+TGG - tig0019653:41844-41863 Msa1375330:three_prime_UTR 35.0%
TGGAATCTTTAATCTTCGTG+AGG - tig0019653:41864-41883 Msa1375330:three_prime_UTR 35.0%
TTTATCCAACTGCCTACTAT+TGG + tig0019653:41914-41933 None:intergenic 35.0%
AAAAGAAGAACTCTTACCAC+TGG + tig0019653:41941-41960 None:intergenic 35.0%
TAGACTTTCAGTGCATACAA+TGG + tig0019653:42016-42035 None:intergenic 35.0%
TCATACATGCTTGTGATTTC+AGG + tig0019653:42320-42339 None:intergenic 35.0%
AATAGTATTGCCTTGCTTTG+AGG - tig0019653:42584-42603 Msa1375330:CDS 35.0%
!! ATGAAACTAGTTGATAGCGA+AGG + tig0019653:42748-42767 None:intergenic 35.0%
ACTATAACCTCTTCTTCTTC+TGG + tig0019653:42941-42960 None:intergenic 35.0%
AAAAACTCTCAAGGCAAAGA+TGG - tig0019653:43048-43067 Msa1375330:CDS 35.0%
!! TCAATTTTTGGATGCTGTAC+AGG - tig0019653:43089-43108 Msa1375330:CDS 35.0%
! TGTTTTACCAACAGAGAGTT+AGG + tig0019653:43159-43178 None:intergenic 35.0%
TAAGACATGTCATGAGAGTA+AGG - tig0019653:43412-43431 Msa1375330:CDS 35.0%
GCAAAATAAATTGACCGTGA+AGG - tig0019653:43647-43666 Msa1375330:CDS 35.0%
GAGATAAAACTTTCACACCT+TGG + tig0019653:43674-43693 None:intergenic 35.0%
ATCTCATAAAAAGCAGCAGA+TGG - tig0019653:43689-43708 Msa1375330:CDS 35.0%
! TCAAAGCACTTCATAGAGAT+GGG - tig0019653:43715-43734 Msa1375330:CDS 35.0%
GCACATTATGATATTCCTAG+AGG - tig0019653:43873-43892 Msa1375330:intron 35.0%
ATATAATGAGGCATACCTCT+AGG + tig0019653:43891-43910 None:intergenic 35.0%
AGACCTTATAACATCCTCTT+TGG - tig0019653:44122-44141 Msa1375330:intron 35.0%
GATCCAAAGAGGATGTTATA+AGG + tig0019653:44128-44147 None:intergenic 35.0%
TCCAATGAACAACAAGTCAA+AGG - tig0019653:44146-44165 Msa1375330:intron 35.0%
!! TCCTTTGACTTGTTGTTCAT+TGG + tig0019653:44150-44169 None:intergenic 35.0%
!! TCCACTTTTGATGAAGTGAA+TGG - tig0019653:44258-44277 Msa1375330:intron 35.0%
TCCATTCACTTCATCAAAAG+TGG + tig0019653:44262-44281 None:intergenic 35.0%
AGATGGTACTGTCAAAAAGT+TGG + tig0019653:44293-44312 None:intergenic 35.0%
GATGATATACTCATGCAAGA+TGG + tig0019653:44310-44329 None:intergenic 35.0%
AGGGTGAAAAATCACTATTC+TGG + tig0019653:44353-44372 None:intergenic 35.0%
! ATGTGTTGTGAGGAAAGTTT+TGG - tig0019653:44404-44423 Msa1375330:intron 35.0%
!! ATGTTATTGGTGATGGATGA+GGG + tig0019653:44467-44486 None:intergenic 35.0%
!! AATGTTATTGGTGATGGATG+AGG + tig0019653:44468-44487 None:intergenic 35.0%
!! CATTACAACAGCTTGTTGAA+AGG - tig0019653:44484-44503 Msa1375330:intron 35.0%
CAATTTCTTCTGCATCAACA+TGG + tig0019653:44542-44561 None:intergenic 35.0%
TGATGCAGAAGAAATTGCAA+TGG - tig0019653:44545-44564 Msa1375330:intron 35.0%
!!! TGTTTTGGAAACACTGGTTT+TGG - tig0019653:44581-44600 Msa1375330:CDS 35.0%
GCCATTAAGTCATTTGTCTT+AGG - tig0019653:44721-44740 Msa1375330:intron 35.0%
ATCTTTCGATTGGAGAAAGA+GGG + tig0019653:44917-44936 None:intergenic 35.0%
TATCTTTCGATTGGAGAAAG+AGG + tig0019653:44918-44937 None:intergenic 35.0%
!!! CATTTTTGGTTAACCAGAGG+AGG + tig0019653:41829-41848 None:intergenic 40.0%
TAATCTTCGTGAGGCTCATT+CGG - tig0019653:41873-41892 Msa1375330:three_prime_UTR 40.0%
! GAAGATCGGTTTCCAATAGT+AGG - tig0019653:41899-41918 Msa1375330:three_prime_UTR 40.0%
AAGCACATCTGAACCAATTC+TGG + tig0019653:42179-42198 None:intergenic 40.0%
!! CTAGTCCGAGGCTTTAAAAA+GGG + tig0019653:42351-42370 None:intergenic 40.0%
!! ACTAGTCCGAGGCTTTAAAA+AGG + tig0019653:42352-42371 None:intergenic 40.0%
!!! TTTTTAAAGCCTCGGACTAG+TGG - tig0019653:42351-42370 Msa1375330:CDS 40.0%
AGAAAGGGGAAAGACTTTGA+AGG - tig0019653:42481-42500 Msa1375330:CDS 40.0%
ATCACTAGATCCTCAAAGCA+AGG + tig0019653:42597-42616 None:intergenic 40.0%
! CTTTGAGGATCTAGTGATCA+AGG - tig0019653:42599-42618 Msa1375330:CDS 40.0%
ACATAAAACTCGACATGACG+TGG + tig0019653:42644-42663 None:intergenic 40.0%
ATCGGTCATAGTAACTGTTG+TGG + tig0019653:42717-42736 None:intergenic 40.0%
TTGGCAAGATGCAGCAAAAA+TGG - tig0019653:42832-42851 Msa1375330:intron 40.0%
! TCATTCATGTAATGGGGTGA+GGG + tig0019653:42872-42891 None:intergenic 40.0%
! ATCATTCATGTAATGGGGTG+AGG + tig0019653:42873-42892 None:intergenic 40.0%
!!! GATGGAAGAATTTTGACTGC+AGG - tig0019653:42909-42928 Msa1375330:intron 40.0%
! TAGTTGTAAGAGTGTACGTG+TGG - tig0019653:42957-42976 Msa1375330:CDS 40.0%
GAATGATCGGATAGCAGATT+TGG - tig0019653:42981-43000 Msa1375330:CDS 40.0%
GAACTGCTGGGAAATTTACT+TGG + tig0019653:43474-43493 None:intergenic 40.0%
! CATCTCTATGAAGTGCTTTG+AGG + tig0019653:43716-43735 None:intergenic 40.0%
! CTCAAAGCACTTCATAGAGA+TGG - tig0019653:43714-43733 Msa1375330:CDS 40.0%
! CAAAGCACTTCATAGAGATG+GGG - tig0019653:43716-43735 Msa1375330:CDS 40.0%
TCATTACTAAAAGTGGCCAC+AGG + tig0019653:43789-43808 None:intergenic 40.0%
! TGTTTTCTTGCAGGAACAGA+TGG - tig0019653:44051-44070 Msa1375330:intron 40.0%
! GTTTTCTTGCAGGAACAGAT+GGG - tig0019653:44052-44071 Msa1375330:intron 40.0%
GTTGTTCATTGGATCCAAAG+AGG + tig0019653:44139-44158 None:intergenic 40.0%
ACAACACATGCTTGGAAGTT+TGG + tig0019653:44393-44412 None:intergenic 40.0%
TGCAGAAGAAATTGCAATGG+AGG - tig0019653:44548-44567 Msa1375330:intron 40.0%
AGAAGAAATTGCAATGGAGG+TGG - tig0019653:44551-44570 Msa1375330:intron 40.0%
! GGAGGTGGAGAAAAATGTTT+TGG - tig0019653:44566-44585 Msa1375330:intron 40.0%
CAAATGACTTAATGGCCATG+CGG + tig0019653:44717-44736 None:intergenic 40.0%
GTCATTTGTCTTAGGTTCCA+TGG - tig0019653:44729-44748 Msa1375330:intron 40.0%
GGTTTCCAATAGTAGGCAGT+TGG - tig0019653:41906-41925 Msa1375330:three_prime_UTR 45.0%
CAGTTGGATAAACACACCAG+TGG - tig0019653:41922-41941 Msa1375330:three_prime_UTR 45.0%
!!! GGTGATTTTTTCCAAGCTGC+AGG - tig0019653:42142-42161 Msa1375330:three_prime_UTR 45.0%
! TTTTTCCAAGCTGCAGGCAA+TGG - tig0019653:42148-42167 Msa1375330:three_prime_UTR 45.0%
! TTTTCCAAGCTGCAGGCAAT+GGG - tig0019653:42149-42168 Msa1375330:three_prime_UTR 45.0%
GGCAATGGGAAATCCAGAAT+TGG - tig0019653:42163-42182 Msa1375330:exon 45.0%
TTACCAAAACCACTAGTCCG+AGG + tig0019653:42363-42382 None:intergenic 45.0%
! CATTCATGTAATGGGGTGAG+GGG + tig0019653:42871-42890 None:intergenic 45.0%
GTATGCTCCAGAAGAAGAAG+AGG - tig0019653:42931-42950 Msa1375330:CDS 45.0%
GTGTACGTGTGGAGAATGAT+CGG - tig0019653:42968-42987 Msa1375330:CDS 45.0%
GCAAGATCCTAACTCTCTGT+TGG - tig0019653:43149-43168 Msa1375330:CDS 45.0%
AGGAGAAAAGAACAGCAGTG+CGG - tig0019653:43432-43451 Msa1375330:CDS 45.0%
TAAATTTCCCAGCAGTTCGC+AGG - tig0019653:43476-43495 Msa1375330:CDS 45.0%
AAATTGACCGTGAAGGACCA+AGG - tig0019653:43654-43673 Msa1375330:CDS 45.0%
TTTCACACCTTGGTCCTTCA+CGG + tig0019653:43664-43683 None:intergenic 45.0%
ACTTCCAAGCATGTGTTGTG+AGG - tig0019653:44394-44413 Msa1375330:intron 45.0%
CTTTCCTCACAACACATGCT+TGG + tig0019653:44401-44420 None:intergenic 45.0%
!! ACAGCTTGTTGAAAGGGACT+TGG - tig0019653:44491-44510 Msa1375330:intron 45.0%
AGTCATCCATGATTCACGTC+TGG + tig0019653:44517-44536 None:intergenic 45.0%
GGCTCATTCGGATGGAAGAT+CGG - tig0019653:41885-41904 Msa1375330:three_prime_UTR 50.0%
ATTTCCCATTGCCTGCAGCT+TGG + tig0019653:42156-42175 None:intergenic 50.0%
!!! AAGCCTCGGACTAGTGGTTT+TGG - tig0019653:42357-42376 Msa1375330:CDS 50.0%
CACTTTGCTGACACTAGCTC+TGG - tig0019653:43333-43352 Msa1375330:CDS 50.0%
GGAGAAAAGAACAGCAGTGC+GGG - tig0019653:43433-43452 Msa1375330:CDS 50.0%
AGTTCGCAGGACTTGGAAGA+TGG - tig0019653:43489-43508 Msa1375330:CDS 50.0%
ACTTGGCCAGACGTGAATCA+TGG - tig0019653:44508-44527 Msa1375330:intron 50.0%
GGACAGAAGATCTCCTCCTC+TGG - tig0019653:41813-41832 Msa1375330:three_prime_UTR 55.0%
CTTCGTGAGGCTCATTCGGA+TGG - tig0019653:41877-41896 Msa1375330:three_prime_UTR 55.0%
GTGATCAAGGTCTGCGACCA+CGG - tig0019653:42612-42631 Msa1375330:CDS 55.0%
ACATGACGTGGACCAAACCG+TGG + tig0019653:42632-42651 None:intergenic 55.0%
CCTCAATCGTGGTCGTGTTG+CGG + tig0019653:42675-42694 None:intergenic 55.0%
GTGGTCAAATGAGCCCGATG+CGG + tig0019653:42698-42717 None:intergenic 55.0%
! TGTAATGGGGTGAGGGGAGT+GGG + tig0019653:42865-42884 None:intergenic 55.0%
! ATGTAATGGGGTGAGGGGAG+TGG + tig0019653:42866-42885 None:intergenic 55.0%
GCAGTGCGGGACAACTGATT+CGG - tig0019653:43446-43465 Msa1375330:CDS 55.0%
TCCAAGTCCTGCGAACTGCT+GGG + tig0019653:43486-43505 None:intergenic 55.0%
TTCCAAGTCCTGCGAACTGC+TGG + tig0019653:43487-43506 None:intergenic 55.0%
TCACCGTGGGTAGTTGCTCA+TGG - tig0019653:44682-44701 Msa1375330:intron 55.0%
CCACCATGAGCAACTACCCA+CGG + tig0019653:44688-44707 None:intergenic 55.0%
TGGGTAGTTGCTCATGGTGG+TGG - tig0019653:44688-44707 Msa1375330:intron 55.0%
CAAGGTCTGCGACCACGGTT+TGG - tig0019653:42617-42636 Msa1375330:CDS 60.0%
CCGCAACACGACCACGATTG+AGG - tig0019653:42672-42691 Msa1375330:CDS 60.0%
GACCACGATTGAGGCCGCAT+CGG - tig0019653:42681-42700 Msa1375330:CDS 60.0%
ACCACGATTGAGGCCGCATC+GGG - tig0019653:42682-42701 Msa1375330:CDS 60.0%
TCCCAGCAGTTCGCAGGACT+TGG - tig0019653:43482-43501 Msa1375330:CDS 60.0%
CCGTGGGTAGTTGCTCATGG+TGG - tig0019653:44685-44704 Msa1375330:intron 60.0%
!! TCATGGTGGTGGAGACCGCA+TGG - tig0019653:44699-44718 Msa1375330:intron 60.0%
GCCCGATGCGGCCTCAATCG+TGG + tig0019653:42686-42705 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0019653 gene 41763 45049 41763 ID=Msa1375330;Name=Msa1375330
tig0019653 mRNA 41763 45049 41763 ID=Msa1375330-mRNA-1;Parent=Msa1375330;Name=Msa1375330-mRNA-1;_AED=0.00;_eAED=0.00;_QI=48|1|1|1|1|1|4|417|577
tig0019653 exon 41763 42748 41763 ID=Msa1375330-mRNA-1:exon:4469;Parent=Msa1375330-mRNA-1
tig0019653 exon 42918 43881 42918 ID=Msa1375330-mRNA-1:exon:4468;Parent=Msa1375330-mRNA-1
tig0019653 exon 44581 44648 44581 ID=Msa1375330-mRNA-1:exon:4467;Parent=Msa1375330-mRNA-1
tig0019653 exon 44869 45049 44869 ID=Msa1375330-mRNA-1:exon:4466;Parent=Msa1375330-mRNA-1
tig0019653 five_prime_UTR 45002 45049 45002 ID=Msa1375330-mRNA-1:five_prime_utr;Parent=Msa1375330-mRNA-1
tig0019653 CDS 44869 45001 44869 ID=Msa1375330-mRNA-1:cds;Parent=Msa1375330-mRNA-1
tig0019653 CDS 44581 44648 44581 ID=Msa1375330-mRNA-1:cds;Parent=Msa1375330-mRNA-1
tig0019653 CDS 42918 43881 42918 ID=Msa1375330-mRNA-1:cds;Parent=Msa1375330-mRNA-1
tig0019653 CDS 42180 42748 42180 ID=Msa1375330-mRNA-1:cds;Parent=Msa1375330-mRNA-1
tig0019653 three_prime_UTR 41763 42179 41763 ID=Msa1375330-mRNA-1:three_prime_utr;Parent=Msa1375330-mRNA-1
Gene Sequence

>Msa1375330

ATGGACAGAAGATCTCCTCCTCTGGTTAACCAAAAATGTGAATGGCGAATGTTTGGAATCTTTAATCTTCGTGAGGCTCATTCGGATGGAAGATCGGTTTCCAATAGTAGGCAGTTGGATAAACACACCAGTGGCAATGGGAAATCCAGAATTGGTTCAGATGTGCTTAGCACAGTTGATGAAAAGTACCCTGATGTTGATGTATGCTCCAGAAGAAGAAGAGGTTATAGTTGTAAGAGTGTACGTGTGGAGAATGATCGGATAGCAGATTTGGAAAATGAAGTAACAAAAATGATTGTTAATCAGAGATTTTTCAACAAAAACTCTCAAGGCAAAGATGGTGCAGATTGTCAGCCAAATCAATTTTTGGATGCTGTACAGGTTTTATATTCGAACAAGGAACTTTTCACAAAACTTCTGCAAGATCCTAACTCTCTGTTGGTAAAACAGATTCATGACATACAGAAAACTCAAGTGAAAGCAGAACAAAATGAAGTAATAAGATTGAATAAAGCTCAAAACAGTAGTAGTTTTGATAGGTTTAATTTGAGTTCAAATTGTGAGTCTCAGTCCTCTAAAAAAATAGTTACAAATAATGCACAACACTTTGCTGACACTAGCTCTGGCAATGCTCAAAATATTAAGCCTTCAAATTTTGCATTTGGTGAAATAAAGAGAAAGTTAAGACATGTCATGAGAGTAAGGAGAAAAGAACAGCAGTGCGGGACAACTGATTCGGCGCCAAGTAAATTTCCCAGCAGTTCGCAGGACTTGGAAGATGGTAAAAATGTAAAAAAGTTGGACACTTCTGAAAGAAATTCCCCAATTAATGTCCATGTTAGTAGTGAAAAAAGTTTGAAGTTTTTCAAGCTGAAGGATTCTGAGTCAAGTATGAGACAAGAAGAAGTTGCTTCTGAGCAAAATAAATTGACCGTGAAGGACCAAGGTGTGAAAGTTTTATCTCATAAAAAGCAGCAGATGGTCCTCAAAGCACTTCATAGAGATGGGGAAAGTTGCTCTTATAGTAGTTCTTCAGCTCAAAAAATCAAAGATTTGCCTGTGGCCACTTTTAGTAATGAGTTGCAAGTTTTTGGTGCTGCAGATATTAGTGTCAATAAGAGTCTTTCTGCCGACAATTTGCATGCACATTATGATATTCCTAGAGGAACAGATGGGTCACTAGTACAAGTTGATTACGATAGATTTGAAGAGAACCATCTTGAAGACCTTATAACATCCTCTTTGGATCCAATGAACAACAAGTCAAAGGATATCATAAGTGAAGTTCTGCAGACTTTCAGCTTGAAATGTGATGAACCTATGAAGAGCCATTTATCAAACTTATTGATGGATTCTTCATCCACTTTTGATGAAGTGAATGGATTGACTGACCAACTTTTTGACAGTACCATCTTGCATGAGTATATCATCGAATGTTTCATGGAGTTATACCAGAATAGTGATTTTTCACCCTATTTTTCATCAAGAAATCCAAACTTCCAAGCATGTGTTGTGAGGAAAGTTTTGGTTAGACAGATTAATGAACTTGTTAAACTTCACTTTTTCCCTCATCCATCACCAATAACATTACAACAGCTTGTTGAAAGGGACTTGGCCAGACGTGAATCATGGATGACTATCCATGTTGATGCAGAAGAAATTGCAATGGAGGTGGAGAAAAATGTTTTGGAAACACTGGTTTTGGAAATCGTGTCTGAGATGACTATATCATAG

Protein sequence

>Msa1375330

MDRRSPPLVNQKCEWRMFGIFNLREAHSDGRSVSNSRQLDKHTSGNGKSRIGSDVLSTVDEKYPDVDVCSRRRRGYSCKSVRVENDRIADLENEVTKMIVNQRFFNKNSQGKDGADCQPNQFLDAVQVLYSNKELFTKLLQDPNSLLVKQIHDIQKTQVKAEQNEVIRLNKAQNSSSFDRFNLSSNCESQSSKKIVTNNAQHFADTSSGNAQNIKPSNFAFGEIKRKLRHVMRVRRKEQQCGTTDSAPSKFPSSSQDLEDGKNVKKLDTSERNSPINVHVSSEKSLKFFKLKDSESSMRQEEVASEQNKLTVKDQGVKVLSHKKQQMVLKALHRDGESCSYSSSSAQKIKDLPVATFSNELQVFGAADISVNKSLSADNLHAHYDIPRGTDGSLVQVDYDRFEENHLEDLITSSLDPMNNKSKDIISEVLQTFSLKCDEPMKSHLSNLLMDSSSTFDEVNGLTDQLFDSTILHEYIIECFMELYQNSDFSPYFSSRNPNFQACVVRKVLVRQINELVKLHFFPHPSPITLQQLVERDLARRESWMTIHVDAEEIAMEVEKNVLETLVLEIVSEMTIS*