AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0880230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0880230 MtrunA17_Chr8g0386941 90.722 582 39 3 1 577 1 572 0.0 1027
Msa0880230 MtrunA17_Chr7g0247821 30.000 160 106 3 424 577 753 912 3.00e-13 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 93 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTAACATGGACATTAAT+TGG 0.098262 6_1:-26753439 None:intergenic
ACAAGCTGTTGTAATGTTAT+TGG 0.222383 6_1:-26754364 None:intergenic
ACAACACATGCTTGGAAGTT+TGG 0.253601 6_1:-26754277 None:intergenic
ACCTAAGACAAATGACTTAA+TGG 0.259882 6_1:-26754609 None:intergenic
AAGCACATCTGAACCAATTC+TGG 0.268014 6_1:-26752063 None:intergenic
GCCATTAAGTCATTTGTCTT+AGG 0.288201 6_1:+26754608 Msa0880230:three_prime_UTR
TCCTTTGACTTGTTGTTCAT+TGG 0.294401 6_1:-26754034 None:intergenic
TTTATCCAACTGCCTACTAT+TGG 0.307894 6_1:-26751798 None:intergenic
CCATCAATAAGTTTGATAAA+TGG 0.309576 6_1:-26754114 None:intergenic
ACTATAACCTCTTCTTCTTC+TGG 0.312350 6_1:-26752825 None:intergenic
AGACCTTATAACATCCTCTT+TGG 0.324442 6_1:+26754009 Msa0880230:CDS
TGTGGCATGGTTCTTACTAT+TGG 0.324521 6_1:+26751635 None:intergenic
CCATTTATCAAACTTATTGA+TGG 0.332391 6_1:+26754114 Msa0880230:CDS
GAATGATCGGATAGCAGATT+TGG 0.343186 6_1:+26752868 Msa0880230:CDS
TTTGATAAATGGCTCTTCAT+AGG 0.348408 6_1:-26754103 None:intergenic
TTCCAAGTCCTGCGAACTGC+TGG 0.360062 6_1:-26753371 None:intergenic
TACTAACATGGACATTAATT+GGG 0.364399 6_1:-26753438 None:intergenic
TCACCAAATGCAAAATTTGA+AGG 0.381999 6_1:-26753262 None:intergenic
TAATCTTCGTGAGGCTCATT+CGG 0.396050 6_1:+26751760 Msa0880230:CDS
TCCCAGCAGTTCGCAGGACT+TGG 0.403469 6_1:+26753369 Msa0880230:CDS
AAATGTGAATGGCGAATGTT+TGG 0.414827 6_1:+26751731 Msa0880230:CDS
CATCTCTATGAAGTGCTTTG+AGG 0.416519 6_1:-26753600 None:intergenic
ATTACAACAGCTTGTTGAAA+GGG 0.423151 6_1:+26754372 Msa0880230:CDS
CATTCTATTTCTATCTTCCA+TGG 0.427164 6_1:-26754633 None:intergenic
GAACTGCTGGGAAATTTACT+TGG 0.433594 6_1:-26753358 None:intergenic
TCAAAACTTACATCAACATC+AGG 0.435516 6_1:-26752107 None:intergenic
GTATATCATCGAATGTTTCA+TGG 0.442276 6_1:+26754207 Msa0880230:CDS
TTTCACACCTTGGTCCTTCA+CGG 0.447121 6_1:-26753548 None:intergenic
GGCAATGGGAAATCCAGAAT+TGG 0.447724 6_1:+26752050 Msa0880230:intron
TCCATTCACTTCATCAAAAG+TGG 0.447779 6_1:-26754146 None:intergenic
GATCCAAAGAGGATGTTATA+AGG 0.448481 6_1:-26754012 None:intergenic
GTCATTTGTCTTAGGTTCCA+TGG 0.452543 6_1:+26754616 Msa0880230:three_prime_UTR
TTGCAACTCATTACTAAAAG+TGG 0.454464 6_1:-26753680 None:intergenic
TAAGACATGTCATGAGAGTA+AGG 0.458092 6_1:+26753299 Msa0880230:CDS
ATGTGTTGTGAGGAAAGTTT+TGG 0.462231 6_1:+26754291 Msa0880230:CDS
TAGAACATTAATCAATAACT+TGG 0.472348 6_1:+26754889 Msa0880230:three_prime_UTR
CTTTCCTCACAACACATGCT+TGG 0.474299 6_1:-26754285 None:intergenic
CTCAAAGCACTTCATAGAGA+TGG 0.475720 6_1:+26753601 Msa0880230:CDS
TATCTTTCGATTGGAGAAAG+AGG 0.494534 6_1:-26754802 None:intergenic
TCAAAGCACTTCATAGAGAT+GGG 0.495966 6_1:+26753602 Msa0880230:CDS
GCAGTGCGGGACAACTGATT+CGG 0.510006 6_1:+26753333 Msa0880230:CDS
CATTACAACAGCTTGTTGAA+AGG 0.512663 6_1:+26754371 Msa0880230:CDS
CACTTTGCTGACACTAGCTC+TGG 0.514081 6_1:+26753220 Msa0880230:CDS
TAAATTTCCCAGCAGTTCGC+AGG 0.515356 6_1:+26753363 Msa0880230:CDS
TGGGTAGTTGCTCATGGTGG+TGG 0.521127 6_1:+26754575 Msa0880230:three_prime_UTR
ATAATGTGCATGCAAATTGT+CGG 0.521272 6_1:-26753746 None:intergenic
TGTTGTAATGTTATTGGTGA+TGG 0.522358 6_1:-26754358 None:intergenic
CAATTTCTTCTGCATCAACA+TGG 0.524519 6_1:-26754426 None:intergenic
ACTTGGCCAGACGTGAATCA+TGG 0.524559 6_1:+26754395 Msa0880230:CDS
AGTCATCCATGATTCACGTC+TGG 0.529300 6_1:-26754401 None:intergenic
GGAGAAAAGAACAGCAGTGC+GGG 0.535867 6_1:+26753320 Msa0880230:CDS
GGTTTCCAATAGTAGGCAGT+TGG 0.538036 6_1:+26751793 Msa0880230:CDS
TCCAAGTCCTGCGAACTGCT+GGG 0.538815 6_1:-26753370 None:intergenic
ATCATAAATTTGATCACCGT+GGG 0.540757 6_1:+26754556 Msa0880230:three_prime_UTR
ATGTTATAAGGTCTTCAAGA+TGG 0.541014 6_1:-26754000 None:intergenic
GGCTCATTCGGATGGAAGAT+CGG 0.542039 6_1:+26751772 Msa0880230:CDS
CTTCGTGAGGCTCATTCGGA+TGG 0.545723 6_1:+26751764 Msa0880230:CDS
GAGATAAAACTTTCACACCT+TGG 0.547276 6_1:-26753558 None:intergenic
GGACAGAAGATCTCCTCCTC+TGG 0.548594 6_1:+26751700 Msa0880230:CDS
GAAGATCGGTTTCCAATAGT+AGG 0.549773 6_1:+26751786 Msa0880230:CDS
ATTATTGAGAGTGATGCATA+TGG 0.552597 6_1:+26754774 Msa0880230:three_prime_UTR
AGTTCGCAGGACTTGGAAGA+TGG 0.556294 6_1:+26753376 Msa0880230:CDS
GCAAGATCCTAACTCTCTGT+TGG 0.561889 6_1:+26753036 Msa0880230:CDS
ATCTTTCGATTGGAGAAAGA+GGG 0.568464 6_1:-26754801 None:intergenic
AATGTTATTGGTGATGGATG+AGG 0.570884 6_1:-26754352 None:intergenic
GTATGCTCCAGAAGAAGAAG+AGG 0.572437 6_1:+26752818 Msa0880230:CDS
TGGAATCTTTAATCTTCGTG+AGG 0.576871 6_1:+26751751 Msa0880230:CDS
TCCAATGAACAACAAGTCAA+AGG 0.581216 6_1:+26754033 Msa0880230:CDS
GTTGTTCATTGGATCCAAAG+AGG 0.590616 6_1:-26754023 None:intergenic
ACAGCTTGTTGAAAGGGACT+TGG 0.590760 6_1:+26754378 Msa0880230:CDS
GCAAAATAAATTGACCGTGA+AGG 0.591471 6_1:+26753534 Msa0880230:CDS
GTGTACGTGTGGAGAATGAT+CGG 0.594868 6_1:+26752855 Msa0880230:CDS
GATGATATACTCATGCAAGA+TGG 0.600077 6_1:-26754194 None:intergenic
ATGTTATTGGTGATGGATGA+GGG 0.600743 6_1:-26754351 None:intergenic
TCACCGTGGGTAGTTGCTCA+TGG 0.602050 6_1:+26754569 Msa0880230:three_prime_UTR
AGAAGAAATTGCAATGGAGG+TGG 0.605756 6_1:+26754438 Msa0880230:CDS
ACTAACATGGACATTAATTG+GGG 0.615194 6_1:-26753437 None:intergenic
TCATGGTGGTGGAGACCGCA+TGG 0.624096 6_1:+26754586 Msa0880230:three_prime_UTR
ACTTCCAAGCATGTGTTGTG+AGG 0.626643 6_1:+26754281 Msa0880230:CDS
CAAAACTTACATCAACATCA+GGG 0.632189 6_1:-26752106 None:intergenic
AAATTGACCGTGAAGGACCA+AGG 0.639782 6_1:+26753541 Msa0880230:CDS
TAGTTGTAAGAGTGTACGTG+TGG 0.641450 6_1:+26752844 Msa0880230:CDS
AATCATAAATTTGATCACCG+TGG 0.641648 6_1:+26754555 Msa0880230:three_prime_UTR
TGCAGAAGAAATTGCAATGG+AGG 0.645966 6_1:+26754435 Msa0880230:CDS
TCATTACTAAAAGTGGCCAC+AGG 0.656006 6_1:-26753673 None:intergenic
GCACATTATGATATTCCTAG+AGG 0.662018 6_1:+26753760 Msa0880230:CDS
CCACCATGAGCAACTACCCA+CGG 0.670027 6_1:-26754572 None:intergenic
CAAAGCACTTCATAGAGATG+GGG 0.670872 6_1:+26753603 Msa0880230:CDS
TGATGCAGAAGAAATTGCAA+TGG 0.674423 6_1:+26754432 Msa0880230:CDS
CCGTGGGTAGTTGCTCATGG+TGG 0.710283 6_1:+26754572 Msa0880230:three_prime_UTR
AGGAGAAAAGAACAGCAGTG+CGG 0.716182 6_1:+26753319 Msa0880230:CDS
CAGTTGGATAAACACACCAG+TGG 0.724616 6_1:+26751809 Msa0880230:CDS
CAAATGACTTAATGGCCATG+CGG 0.729978 6_1:-26754601 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGAAGAAAACTATTTTTTT+AGG - chr6_1:26751676-26751695 None:intergenic 15.0%
!! TATTATACTCATCTTAAATT+TGG + chr6_1:26752002-26752021 Msa0880230:intron 15.0%
!! TGTTAATAAATATCTAGAAA+GGG + chr6_1:26752353-26752372 Msa0880230:intron 15.0%
!!! ATTTGTAACTATTTTTTTAG+AGG - chr6_1:26753191-26753210 None:intergenic 15.0%
!! AAAAAACTAGTTATATAATG+AGG - chr6_1:26753790-26753809 None:intergenic 15.0%
!!! AAAATAGTTTTCTTCAATCA+TGG + chr6_1:26751679-26751698 Msa0880230:exon 20.0%
!!! TTCTTCTTTTTTAGCTTAAA+AGG + chr6_1:26751838-26751857 Msa0880230:intron 20.0%
!!! TGAATCAAATTTTGATTTTC+TGG + chr6_1:26751969-26751988 Msa0880230:intron 20.0%
!!! GAATCAAATTTTGATTTTCT+GGG + chr6_1:26751970-26751989 Msa0880230:intron 20.0%
!! CTGTTAATAAATATCTAGAA+AGG + chr6_1:26752352-26752371 Msa0880230:intron 20.0%
!! GTTAATAAATATCTAGAAAG+GGG + chr6_1:26752354-26752373 Msa0880230:intron 20.0%
!! TACTATTGTATTATGGTTAA+TGG - chr6_1:26752458-26752477 None:intergenic 20.0%
!!! TTTAAAATGTCATGTATAGT+TGG + chr6_1:26752700-26752719 Msa0880230:intron 20.0%
!! TACTAAATCATTCATGTAAT+GGG - chr6_1:26752766-26752785 None:intergenic 20.0%
!! TGGTAAAAATGTAAAAAAGT+TGG + chr6_1:26753396-26753415 Msa0880230:CDS 20.0%
!! TATTGATCAATTCTTTAGTA+TGG + chr6_1:26753864-26753883 Msa0880230:intron 20.0%
!!! TAAATTATATGTTTTCTTGC+AGG + chr6_1:26753929-26753948 Msa0880230:intron 20.0%
!!! TTCTAAAAATATCTTTCGAT+TGG - chr6_1:26754814-26754833 None:intergenic 20.0%
!! TAGAACATTAATCAATAACT+TGG + chr6_1:26754889-26754908 Msa0880230:three_prime_UTR 20.0%
! CAAATGATATTTATGGTTAC+TGG - chr6_1:26751935-26751954 None:intergenic 25.0%
! ACAGCTTCAAATGATATTTA+TGG - chr6_1:26751942-26751961 None:intergenic 25.0%
! AAGGCAATACTATTGTATTA+TGG - chr6_1:26752465-26752484 None:intergenic 25.0%
!! ATAGCGAAGGTTTAAAATAT+CGG - chr6_1:26752622-26752641 None:intergenic 25.0%
! ACTAAATCATTCATGTAATG+GGG - chr6_1:26752765-26752784 None:intergenic 25.0%
! CTACTAAATCATTCATGTAA+TGG - chr6_1:26752767-26752786 None:intergenic 25.0%
!!! TTTTTCAACAAAAACTCTCA+AGG + chr6_1:26752926-26752945 Msa0880230:CDS 25.0%
!!! AAAACAGTAGTAGTTTTGAT+AGG + chr6_1:26753134-26753153 Msa0880230:CDS 25.0%
! TACTAACATGGACATTAATT+GGG - chr6_1:26753441-26753460 None:intergenic 25.0%
!!! AACTTTTTTCACTACTAACA+TGG - chr6_1:26753453-26753472 None:intergenic 25.0%
! CAATACATAGATGATAAATG+AGG - chr6_1:26753849-26753868 None:intergenic 25.0%
! CCATCAATAAGTTTGATAAA+TGG - chr6_1:26754117-26754136 None:intergenic 25.0%
! CCATTTATCAAACTTATTGA+TGG + chr6_1:26754114-26754133 Msa0880230:CDS 25.0%
! GGATTTCTTGATGAAAAATA+GGG - chr6_1:26754259-26754278 None:intergenic 25.0%
! TGGATTTCTTGATGAAAAAT+AGG - chr6_1:26754260-26754279 None:intergenic 25.0%
TGGTTAACCAAAAATGTGAA+TGG + chr6_1:26751720-26751739 Msa0880230:CDS 30.0%
! ACTCATCTTAAATTTGGAAC+TGG + chr6_1:26752008-26752027 Msa0880230:intron 30.0%
CAAAACTTACATCAACATCA+GGG - chr6_1:26752109-26752128 None:intergenic 30.0%
TCAAAACTTACATCAACATC+AGG - chr6_1:26752110-26752129 None:intergenic 30.0%
TTTGTAGCAGCTATTGTAAA+AGG + chr6_1:26752156-26752175 Msa0880230:intron 30.0%
!!! TTAAACCCTTTTTAAAGCCT+CGG + chr6_1:26752230-26752249 Msa0880230:intron 30.0%
AAATGTACTAACAACTCGAA+TGG - chr6_1:26752325-26752344 None:intergenic 30.0%
ACTACTTCAGTAACTTAGAA+AGG - chr6_1:26752410-26752429 None:intergenic 30.0%
! ATTTAGTAGCATAGCATTGA+TGG + chr6_1:26752778-26752797 Msa0880230:intron 30.0%
! TTGTCAGCCAAATCAATTTT+TGG + chr6_1:26752964-26752983 Msa0880230:CDS 30.0%
ACAGCATCCAAAAATTGATT+TGG - chr6_1:26752974-26752993 None:intergenic 30.0%
!! ACAGGTTTTATATTCGAACA+AGG + chr6_1:26752994-26753013 Msa0880230:CDS 30.0%
! AAGCCTTCAAATTTTGCATT+TGG + chr6_1:26753259-26753278 Msa0880230:CDS 30.0%
TCACCAAATGCAAAATTTGA+AGG - chr6_1:26753265-26753284 None:intergenic 30.0%
ACTAACATGGACATTAATTG+GGG - chr6_1:26753440-26753459 None:intergenic 30.0%
CTACTAACATGGACATTAAT+TGG - chr6_1:26753442-26753461 None:intergenic 30.0%
!!! TTTGAAGTTTTTCAAGCTGA+AGG + chr6_1:26753471-26753490 Msa0880230:CDS 30.0%
AAAAATCAAAGATTTGCCTG+TGG + chr6_1:26753657-26753676 Msa0880230:CDS 30.0%
TTGCAACTCATTACTAAAAG+TGG - chr6_1:26753683-26753702 None:intergenic 30.0%
! AGTAATGAGTTGCAAGTTTT+TGG + chr6_1:26753688-26753707 Msa0880230:CDS 30.0%
ATAATGTGCATGCAAATTGT+CGG - chr6_1:26753749-26753768 None:intergenic 30.0%
ATTCTTTAGTATGGTCTGAA+AGG + chr6_1:26753873-26753892 Msa0880230:intron 30.0%
ATGTTATAAGGTCTTCAAGA+TGG - chr6_1:26754003-26754022 None:intergenic 30.0%
TTTGATAAATGGCTCTTCAT+AGG - chr6_1:26754106-26754125 None:intergenic 30.0%
GTATATCATCGAATGTTTCA+TGG + chr6_1:26754207-26754226 Msa0880230:CDS 30.0%
TGTTGTAATGTTATTGGTGA+TGG - chr6_1:26754361-26754380 None:intergenic 30.0%
ACAAGCTGTTGTAATGTTAT+TGG - chr6_1:26754367-26754386 None:intergenic 30.0%
!! ATTACAACAGCTTGTTGAAA+GGG + chr6_1:26754372-26754391 Msa0880230:CDS 30.0%
!!! GAAAAATGTTTTGGAAACAC+TGG + chr6_1:26754462-26754481 Msa0880230:CDS 30.0%
AATCATAAATTTGATCACCG+TGG + chr6_1:26754555-26754574 Msa0880230:three_prime_UTR 30.0%
ATCATAAATTTGATCACCGT+GGG + chr6_1:26754556-26754575 Msa0880230:three_prime_UTR 30.0%
ACCTAAGACAAATGACTTAA+TGG - chr6_1:26754612-26754631 None:intergenic 30.0%
!! CATTCTATTTCTATCTTCCA+TGG - chr6_1:26754636-26754655 None:intergenic 30.0%
ATTATTGAGAGTGATGCATA+TGG + chr6_1:26754774-26754793 Msa0880230:three_prime_UTR 30.0%
!!! TCACATTTTTGGTTAACCAG+AGG - chr6_1:26751719-26751738 None:intergenic 35.0%
! ACATTCGCCATTCACATTTT+TGG - chr6_1:26751730-26751749 None:intergenic 35.0%
AAATGTGAATGGCGAATGTT+TGG + chr6_1:26751731-26751750 Msa0880230:CDS 35.0%
TGGAATCTTTAATCTTCGTG+AGG + chr6_1:26751751-26751770 Msa0880230:CDS 35.0%
TTTATCCAACTGCCTACTAT+TGG - chr6_1:26751801-26751820 None:intergenic 35.0%
AAAAGAAGAACTCTTACCAC+TGG - chr6_1:26751828-26751847 None:intergenic 35.0%
TAGACTTTCAGTGCATACAA+TGG - chr6_1:26751903-26751922 None:intergenic 35.0%
TCATACATGCTTGTGATTTC+AGG - chr6_1:26752207-26752226 None:intergenic 35.0%
AATAGTATTGCCTTGCTTTG+AGG + chr6_1:26752471-26752490 Msa0880230:intron 35.0%
!! ATGAAACTAGTTGATAGCGA+AGG - chr6_1:26752635-26752654 None:intergenic 35.0%
ACTATAACCTCTTCTTCTTC+TGG - chr6_1:26752828-26752847 None:intergenic 35.0%
AAAAACTCTCAAGGCAAAGA+TGG + chr6_1:26752935-26752954 Msa0880230:CDS 35.0%
!! TCAATTTTTGGATGCTGTAC+AGG + chr6_1:26752976-26752995 Msa0880230:CDS 35.0%
! TGTTTTACCAACAGAGAGTT+AGG - chr6_1:26753046-26753065 None:intergenic 35.0%
TAAGACATGTCATGAGAGTA+AGG + chr6_1:26753299-26753318 Msa0880230:CDS 35.0%
GCAAAATAAATTGACCGTGA+AGG + chr6_1:26753534-26753553 Msa0880230:CDS 35.0%
GAGATAAAACTTTCACACCT+TGG - chr6_1:26753561-26753580 None:intergenic 35.0%
ATCTCATAAAAAGCAGCAGA+TGG + chr6_1:26753576-26753595 Msa0880230:CDS 35.0%
! TCAAAGCACTTCATAGAGAT+GGG + chr6_1:26753602-26753621 Msa0880230:CDS 35.0%
GCACATTATGATATTCCTAG+AGG + chr6_1:26753760-26753779 Msa0880230:CDS 35.0%
ATATAATGAGGCATACCTCT+AGG - chr6_1:26753778-26753797 None:intergenic 35.0%
AGACCTTATAACATCCTCTT+TGG + chr6_1:26754009-26754028 Msa0880230:CDS 35.0%
GATCCAAAGAGGATGTTATA+AGG - chr6_1:26754015-26754034 None:intergenic 35.0%
TCCAATGAACAACAAGTCAA+AGG + chr6_1:26754033-26754052 Msa0880230:CDS 35.0%
!! TCCTTTGACTTGTTGTTCAT+TGG - chr6_1:26754037-26754056 None:intergenic 35.0%
!! TCCACTTTTGATGAAGTGAA+TGG + chr6_1:26754145-26754164 Msa0880230:CDS 35.0%
TCCATTCACTTCATCAAAAG+TGG - chr6_1:26754149-26754168 None:intergenic 35.0%
AGATGGTACTGTCAAAAAGT+TGG - chr6_1:26754180-26754199 None:intergenic 35.0%
GATGATATACTCATGCAAGA+TGG - chr6_1:26754197-26754216 None:intergenic 35.0%
AGGGTGAAAAATCACTATTC+TGG - chr6_1:26754240-26754259 None:intergenic 35.0%
! ATGTGTTGTGAGGAAAGTTT+TGG + chr6_1:26754291-26754310 Msa0880230:CDS 35.0%
!! ATGTTATTGGTGATGGATGA+GGG - chr6_1:26754354-26754373 None:intergenic 35.0%
!! AATGTTATTGGTGATGGATG+AGG - chr6_1:26754355-26754374 None:intergenic 35.0%
!! CATTACAACAGCTTGTTGAA+AGG + chr6_1:26754371-26754390 Msa0880230:CDS 35.0%
CAATTTCTTCTGCATCAACA+TGG - chr6_1:26754429-26754448 None:intergenic 35.0%
TGATGCAGAAGAAATTGCAA+TGG + chr6_1:26754432-26754451 Msa0880230:CDS 35.0%
!!! TGTTTTGGAAACACTGGTTT+TGG + chr6_1:26754468-26754487 Msa0880230:CDS 35.0%
GCCATTAAGTCATTTGTCTT+AGG + chr6_1:26754608-26754627 Msa0880230:three_prime_UTR 35.0%
ATCTTTCGATTGGAGAAAGA+GGG - chr6_1:26754804-26754823 None:intergenic 35.0%
TATCTTTCGATTGGAGAAAG+AGG - chr6_1:26754805-26754824 None:intergenic 35.0%
!!! CATTTTTGGTTAACCAGAGG+AGG - chr6_1:26751716-26751735 None:intergenic 40.0%
TAATCTTCGTGAGGCTCATT+CGG + chr6_1:26751760-26751779 Msa0880230:CDS 40.0%
! GAAGATCGGTTTCCAATAGT+AGG + chr6_1:26751786-26751805 Msa0880230:CDS 40.0%
AAGCACATCTGAACCAATTC+TGG - chr6_1:26752066-26752085 None:intergenic 40.0%
!! CTAGTCCGAGGCTTTAAAAA+GGG - chr6_1:26752238-26752257 None:intergenic 40.0%
!! ACTAGTCCGAGGCTTTAAAA+AGG - chr6_1:26752239-26752258 None:intergenic 40.0%
!!! TTTTTAAAGCCTCGGACTAG+TGG + chr6_1:26752238-26752257 Msa0880230:intron 40.0%
AGAAAGGGGAAAGACTTTGA+AGG + chr6_1:26752368-26752387 Msa0880230:intron 40.0%
ATCACTAGATCCTCAAAGCA+AGG - chr6_1:26752484-26752503 None:intergenic 40.0%
! CTTTGAGGATCTAGTGATCA+AGG + chr6_1:26752486-26752505 Msa0880230:intron 40.0%
ACATAAAACTCGACATGACG+TGG - chr6_1:26752531-26752550 None:intergenic 40.0%
ATCGGTCATAGTAACTGTTG+TGG - chr6_1:26752604-26752623 None:intergenic 40.0%
TTGGCAAGATGCAGCAAAAA+TGG + chr6_1:26752719-26752738 Msa0880230:intron 40.0%
! TCATTCATGTAATGGGGTGA+GGG - chr6_1:26752759-26752778 None:intergenic 40.0%
! ATCATTCATGTAATGGGGTG+AGG - chr6_1:26752760-26752779 None:intergenic 40.0%
!!! GATGGAAGAATTTTGACTGC+AGG + chr6_1:26752796-26752815 Msa0880230:intron 40.0%
! TAGTTGTAAGAGTGTACGTG+TGG + chr6_1:26752844-26752863 Msa0880230:CDS 40.0%
GAATGATCGGATAGCAGATT+TGG + chr6_1:26752868-26752887 Msa0880230:CDS 40.0%
GAACTGCTGGGAAATTTACT+TGG - chr6_1:26753361-26753380 None:intergenic 40.0%
! CATCTCTATGAAGTGCTTTG+AGG - chr6_1:26753603-26753622 None:intergenic 40.0%
! CTCAAAGCACTTCATAGAGA+TGG + chr6_1:26753601-26753620 Msa0880230:CDS 40.0%
! CAAAGCACTTCATAGAGATG+GGG + chr6_1:26753603-26753622 Msa0880230:CDS 40.0%
TCATTACTAAAAGTGGCCAC+AGG - chr6_1:26753676-26753695 None:intergenic 40.0%
! TGTTTTCTTGCAGGAACAGA+TGG + chr6_1:26753938-26753957 Msa0880230:intron 40.0%
! GTTTTCTTGCAGGAACAGAT+GGG + chr6_1:26753939-26753958 Msa0880230:intron 40.0%
GTTGTTCATTGGATCCAAAG+AGG - chr6_1:26754026-26754045 None:intergenic 40.0%
ACAACACATGCTTGGAAGTT+TGG - chr6_1:26754280-26754299 None:intergenic 40.0%
TGCAGAAGAAATTGCAATGG+AGG + chr6_1:26754435-26754454 Msa0880230:CDS 40.0%
AGAAGAAATTGCAATGGAGG+TGG + chr6_1:26754438-26754457 Msa0880230:CDS 40.0%
! GGAGGTGGAGAAAAATGTTT+TGG + chr6_1:26754453-26754472 Msa0880230:CDS 40.0%
CAAATGACTTAATGGCCATG+CGG - chr6_1:26754604-26754623 None:intergenic 40.0%
GTCATTTGTCTTAGGTTCCA+TGG + chr6_1:26754616-26754635 Msa0880230:three_prime_UTR 40.0%
GGTTTCCAATAGTAGGCAGT+TGG + chr6_1:26751793-26751812 Msa0880230:CDS 45.0%
CAGTTGGATAAACACACCAG+TGG + chr6_1:26751809-26751828 Msa0880230:CDS 45.0%
!!! GGTGATTTTTTCCAAGCTGC+AGG + chr6_1:26752029-26752048 Msa0880230:intron 45.0%
! TTTTTCCAAGCTGCAGGCAA+TGG + chr6_1:26752035-26752054 Msa0880230:intron 45.0%
! TTTTCCAAGCTGCAGGCAAT+GGG + chr6_1:26752036-26752055 Msa0880230:intron 45.0%
GGCAATGGGAAATCCAGAAT+TGG + chr6_1:26752050-26752069 Msa0880230:intron 45.0%
TTACCAAAACCACTAGTCCG+AGG - chr6_1:26752250-26752269 None:intergenic 45.0%
! CATTCATGTAATGGGGTGAG+GGG - chr6_1:26752758-26752777 None:intergenic 45.0%
GTATGCTCCAGAAGAAGAAG+AGG + chr6_1:26752818-26752837 Msa0880230:CDS 45.0%
GTGTACGTGTGGAGAATGAT+CGG + chr6_1:26752855-26752874 Msa0880230:CDS 45.0%
GCAAGATCCTAACTCTCTGT+TGG + chr6_1:26753036-26753055 Msa0880230:CDS 45.0%
AGGAGAAAAGAACAGCAGTG+CGG + chr6_1:26753319-26753338 Msa0880230:CDS 45.0%
TAAATTTCCCAGCAGTTCGC+AGG + chr6_1:26753363-26753382 Msa0880230:CDS 45.0%
AAATTGACCGTGAAGGACCA+AGG + chr6_1:26753541-26753560 Msa0880230:CDS 45.0%
TTTCACACCTTGGTCCTTCA+CGG - chr6_1:26753551-26753570 None:intergenic 45.0%
ACTTCCAAGCATGTGTTGTG+AGG + chr6_1:26754281-26754300 Msa0880230:CDS 45.0%
CTTTCCTCACAACACATGCT+TGG - chr6_1:26754288-26754307 None:intergenic 45.0%
!! ACAGCTTGTTGAAAGGGACT+TGG + chr6_1:26754378-26754397 Msa0880230:CDS 45.0%
AGTCATCCATGATTCACGTC+TGG - chr6_1:26754404-26754423 None:intergenic 45.0%
GGCTCATTCGGATGGAAGAT+CGG + chr6_1:26751772-26751791 Msa0880230:CDS 50.0%
ATTTCCCATTGCCTGCAGCT+TGG - chr6_1:26752043-26752062 None:intergenic 50.0%
!!! AAGCCTCGGACTAGTGGTTT+TGG + chr6_1:26752244-26752263 Msa0880230:intron 50.0%
CACTTTGCTGACACTAGCTC+TGG + chr6_1:26753220-26753239 Msa0880230:CDS 50.0%
GGAGAAAAGAACAGCAGTGC+GGG + chr6_1:26753320-26753339 Msa0880230:CDS 50.0%
AGTTCGCAGGACTTGGAAGA+TGG + chr6_1:26753376-26753395 Msa0880230:CDS 50.0%
ACTTGGCCAGACGTGAATCA+TGG + chr6_1:26754395-26754414 Msa0880230:CDS 50.0%
GGACAGAAGATCTCCTCCTC+TGG + chr6_1:26751700-26751719 Msa0880230:CDS 55.0%
CTTCGTGAGGCTCATTCGGA+TGG + chr6_1:26751764-26751783 Msa0880230:CDS 55.0%
GTGATCAAGGTCTGCGACCA+CGG + chr6_1:26752499-26752518 Msa0880230:intron 55.0%
ACATGACGTGGACCAAACCG+TGG - chr6_1:26752519-26752538 None:intergenic 55.0%
CCTCAATCGTGGTCGTGTTG+CGG - chr6_1:26752562-26752581 None:intergenic 55.0%
GTGGTCAAATGAGCCCGATG+CGG - chr6_1:26752585-26752604 None:intergenic 55.0%
! TGTAATGGGGTGAGGGGAGT+GGG - chr6_1:26752752-26752771 None:intergenic 55.0%
! ATGTAATGGGGTGAGGGGAG+TGG - chr6_1:26752753-26752772 None:intergenic 55.0%
GCAGTGCGGGACAACTGATT+CGG + chr6_1:26753333-26753352 Msa0880230:CDS 55.0%
TCCAAGTCCTGCGAACTGCT+GGG - chr6_1:26753373-26753392 None:intergenic 55.0%
TTCCAAGTCCTGCGAACTGC+TGG - chr6_1:26753374-26753393 None:intergenic 55.0%
TCACCGTGGGTAGTTGCTCA+TGG + chr6_1:26754569-26754588 Msa0880230:three_prime_UTR 55.0%
CCACCATGAGCAACTACCCA+CGG - chr6_1:26754575-26754594 None:intergenic 55.0%
TGGGTAGTTGCTCATGGTGG+TGG + chr6_1:26754575-26754594 Msa0880230:three_prime_UTR 55.0%
CAAGGTCTGCGACCACGGTT+TGG + chr6_1:26752504-26752523 Msa0880230:intron 60.0%
CCGCAACACGACCACGATTG+AGG + chr6_1:26752559-26752578 Msa0880230:intron 60.0%
GACCACGATTGAGGCCGCAT+CGG + chr6_1:26752568-26752587 Msa0880230:intron 60.0%
ACCACGATTGAGGCCGCATC+GGG + chr6_1:26752569-26752588 Msa0880230:intron 60.0%
TCCCAGCAGTTCGCAGGACT+TGG + chr6_1:26753369-26753388 Msa0880230:CDS 60.0%
CCGTGGGTAGTTGCTCATGG+TGG + chr6_1:26754572-26754591 Msa0880230:three_prime_UTR 60.0%
!! TCATGGTGGTGGAGACCGCA+TGG + chr6_1:26754586-26754605 Msa0880230:three_prime_UTR 60.0%
GCCCGATGCGGCCTCAATCG+TGG - chr6_1:26752573-26752592 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 26751650 26754936 26751650 ID=Msa0880230;Name=Msa0880230
chr6_1 mRNA 26751650 26754936 26751650 ID=Msa0880230-mRNA-1;Parent=Msa0880230;Name=Msa0880230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=48|1|1|1|1|1|4|417|577
chr6_1 exon 26751650 26751830 26751650 ID=Msa0880230-mRNA-1:exon:6455;Parent=Msa0880230-mRNA-1
chr6_1 exon 26752051 26752118 26752051 ID=Msa0880230-mRNA-1:exon:6456;Parent=Msa0880230-mRNA-1
chr6_1 exon 26752818 26753781 26752818 ID=Msa0880230-mRNA-1:exon:6457;Parent=Msa0880230-mRNA-1
chr6_1 exon 26753951 26754936 26753951 ID=Msa0880230-mRNA-1:exon:6458;Parent=Msa0880230-mRNA-1
chr6_1 five_prime_UTR 26751650 26751697 26751650 ID=Msa0880230-mRNA-1:five_prime_utr;Parent=Msa0880230-mRNA-1
chr6_1 CDS 26751698 26751830 26751698 ID=Msa0880230-mRNA-1:cds;Parent=Msa0880230-mRNA-1
chr6_1 CDS 26752051 26752118 26752051 ID=Msa0880230-mRNA-1:cds;Parent=Msa0880230-mRNA-1
chr6_1 CDS 26752818 26753781 26752818 ID=Msa0880230-mRNA-1:cds;Parent=Msa0880230-mRNA-1
chr6_1 CDS 26753951 26754519 26753951 ID=Msa0880230-mRNA-1:cds;Parent=Msa0880230-mRNA-1
chr6_1 three_prime_UTR 26754520 26754936 26754520 ID=Msa0880230-mRNA-1:three_prime_utr;Parent=Msa0880230-mRNA-1
Gene Sequence

>Msa0880230

ATGGACAGAAGATCTCCTCCTCTGGTTAACCAAAAATGTGAATGGCGAATGTTTGGAATCTTTAATCTTCGTGAGGCTCATTCGGATGGAAGATCGGTTTCCAATAGTAGGCAGTTGGATAAACACACCAGTGGCAATGGGAAATCCAGAATTGGTTCAGATGTGCTTAGCACAGTTGATGAAAAGTACCCTGATGTTGATGTATGCTCCAGAAGAAGAAGAGGTTATAGTTGTAAGAGTGTACGTGTGGAGAATGATCGGATAGCAGATTTGGAAAATGAAGTAACAAAAATGATTGTTAATCAGAGATTTTTCAACAAAAACTCTCAAGGCAAAGATGGTGCAGATTGTCAGCCAAATCAATTTTTGGATGCTGTACAGGTTTTATATTCGAACAAGGAACTTTTCACAAAACTTCTGCAAGATCCTAACTCTCTGTTGGTAAAACAGATTCATGACATACAGAAAACTCAAGTGAAAGCAGAACAAAATGAAGTAATAAGATTGAATAAAGCTCAAAACAGTAGTAGTTTTGATAGGTTTAATTTGAGTTCAAATTGTGAGTCTCAGTCCTCTAAAAAAATAGTTACAAATAATGCACAACACTTTGCTGACACTAGCTCTGGCAATGCTCAAAATATTAAGCCTTCAAATTTTGCATTTGGTGAAATAAAGAGAAAGTTAAGACATGTCATGAGAGTAAGGAGAAAAGAACAGCAGTGCGGGACAACTGATTCGGCGCCAAGTAAATTTCCCAGCAGTTCGCAGGACTTGGAAGATGGTAAAAATGTAAAAAAGTTGGACACTTCTGAAAGAAATTCCCCAATTAATGTCCATGTTAGTAGTGAAAAAAGTTTGAAGTTTTTCAAGCTGAAGGATTCTGAGTCAAGTATGAGACAAGAAGAAGTTGCTTCTGAGCAAAATAAATTGACCGTGAAGGACCAAGGTGTGAAAGTTTTATCTCATAAAAAGCAGCAGATGGTCCTCAAAGCACTTCATAGAGATGGGGAAAGTTGCTCTTATAGTAGTTCTTCAGCTCAAAAAATCAAAGATTTGCCTGTGGCCACTTTTAGTAATGAGTTGCAAGTTTTTGGTGCTGCAGATATTAGTGTCAATAAGAGTCTTTCTGCCGACAATTTGCATGCACATTATGATATTCCTAGAGGAACAGATGGGTCACTAGTACAAGTTGATTACGATAGATTTGAAGAGAACCATCTTGAAGACCTTATAACATCCTCTTTGGATCCAATGAACAACAAGTCAAAGGATATCATAAGTGAAGTTCTGCAGACTTTCAGCTTGAAATGTGATGAACCTATGAAGAGCCATTTATCAAACTTATTGATGGATTCTTCATCCACTTTTGATGAAGTGAATGGATTGACTGACCAACTTTTTGACAGTACCATCTTGCATGAGTATATCATCGAATGTTTCATGGAGTTATACCAGAATAGTGATTTTTCACCCTATTTTTCATCAAGAAATCCAAACTTCCAAGCATGTGTTGTGAGGAAAGTTTTGGTTAGACAGATTAATGAACTTGTTAAACTTCACTTTTTCCCTCATCCATCACCAATAACATTACAACAGCTTGTTGAAAGGGACTTGGCCAGACGTGAATCATGGATGACTATCCATGTTGATGCAGAAGAAATTGCAATGGAGGTGGAGAAAAATGTTTTGGAAACACTGGTTTTGGAAATCGTGTCTGAGATGACTATATCATAG

Protein sequence

>Msa0880230

MDRRSPPLVNQKCEWRMFGIFNLREAHSDGRSVSNSRQLDKHTSGNGKSRIGSDVLSTVDEKYPDVDVCSRRRRGYSCKSVRVENDRIADLENEVTKMIVNQRFFNKNSQGKDGADCQPNQFLDAVQVLYSNKELFTKLLQDPNSLLVKQIHDIQKTQVKAEQNEVIRLNKAQNSSSFDRFNLSSNCESQSSKKIVTNNAQHFADTSSGNAQNIKPSNFAFGEIKRKLRHVMRVRRKEQQCGTTDSAPSKFPSSSQDLEDGKNVKKLDTSERNSPINVHVSSEKSLKFFKLKDSESSMRQEEVASEQNKLTVKDQGVKVLSHKKQQMVLKALHRDGESCSYSSSSAQKIKDLPVATFSNELQVFGAADISVNKSLSADNLHAHYDIPRGTDGSLVQVDYDRFEENHLEDLITSSLDPMNNKSKDIISEVLQTFSLKCDEPMKSHLSNLLMDSSSTFDEVNGLTDQLFDSTILHEYIIECFMELYQNSDFSPYFSSRNPNFQACVVRKVLVRQINELVKLHFFPHPSPITLQQLVERDLARRESWMTIHVDAEEIAMEVEKNVLETLVLEIVSEMTIS*