AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1306590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1306590 MtrunA17_Chr8g0386941 90.722 582 39 3 1 577 1 572 0.0 1027
Msa1306590 MtrunA17_Chr7g0247821 30.000 160 106 3 424 577 753 912 3.00e-13 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 93 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTAACATGGACATTAAT+TGG 0.098262 8_4:-1549544 None:intergenic
ACAAGCTGTTGTAATGTTAT+TGG 0.222383 8_4:-1550469 None:intergenic
ACAACACATGCTTGGAAGTT+TGG 0.253601 8_4:-1550382 None:intergenic
ACCTAAGACAAATGACTTAA+TGG 0.259882 8_4:-1550714 None:intergenic
AAGCACATCTGAACCAATTC+TGG 0.268014 8_4:-1548168 None:intergenic
GCCATTAAGTCATTTGTCTT+AGG 0.288201 8_4:+1550713 Msa1306590:three_prime_UTR
TCCTTTGACTTGTTGTTCAT+TGG 0.294401 8_4:-1550139 None:intergenic
TTTATCCAACTGCCTACTAT+TGG 0.307894 8_4:-1547903 None:intergenic
CCATCAATAAGTTTGATAAA+TGG 0.309576 8_4:-1550219 None:intergenic
ACTATAACCTCTTCTTCTTC+TGG 0.312350 8_4:-1548930 None:intergenic
AGACCTTATAACATCCTCTT+TGG 0.324442 8_4:+1550114 Msa1306590:CDS
TGTGGCATGGTTCTTACTAT+TGG 0.324521 8_4:+1547740 None:intergenic
CCATTTATCAAACTTATTGA+TGG 0.332391 8_4:+1550219 Msa1306590:CDS
GAATGATCGGATAGCAGATT+TGG 0.343186 8_4:+1548973 Msa1306590:CDS
TTTGATAAATGGCTCTTCAT+AGG 0.348408 8_4:-1550208 None:intergenic
TTCCAAGTCCTGCGAACTGC+TGG 0.360062 8_4:-1549476 None:intergenic
TACTAACATGGACATTAATT+GGG 0.364399 8_4:-1549543 None:intergenic
TCACCAAATGCAAAATTTGA+AGG 0.381999 8_4:-1549367 None:intergenic
TAATCTTCGTGAGGCTCATT+CGG 0.396050 8_4:+1547865 Msa1306590:CDS
TCCCAGCAGTTCGCAGGACT+TGG 0.403469 8_4:+1549474 Msa1306590:CDS
AAATGTGAATGGCGAATGTT+TGG 0.414827 8_4:+1547836 Msa1306590:CDS
CATCTCTATGAAGTGCTTTG+AGG 0.416519 8_4:-1549705 None:intergenic
ATTACAACAGCTTGTTGAAA+GGG 0.423151 8_4:+1550477 Msa1306590:CDS
CATTCTATTTCTATCTTCCA+TGG 0.427164 8_4:-1550738 None:intergenic
GAACTGCTGGGAAATTTACT+TGG 0.433594 8_4:-1549463 None:intergenic
TCAAAACTTACATCAACATC+AGG 0.435516 8_4:-1548212 None:intergenic
GTATATCATCGAATGTTTCA+TGG 0.442276 8_4:+1550312 Msa1306590:CDS
TTTCACACCTTGGTCCTTCA+CGG 0.447121 8_4:-1549653 None:intergenic
GGCAATGGGAAATCCAGAAT+TGG 0.447724 8_4:+1548155 Msa1306590:intron
TCCATTCACTTCATCAAAAG+TGG 0.447779 8_4:-1550251 None:intergenic
GATCCAAAGAGGATGTTATA+AGG 0.448481 8_4:-1550117 None:intergenic
GTCATTTGTCTTAGGTTCCA+TGG 0.452543 8_4:+1550721 Msa1306590:three_prime_UTR
TTGCAACTCATTACTAAAAG+TGG 0.454464 8_4:-1549785 None:intergenic
TAAGACATGTCATGAGAGTA+AGG 0.458092 8_4:+1549404 Msa1306590:CDS
ATGTGTTGTGAGGAAAGTTT+TGG 0.462231 8_4:+1550396 Msa1306590:CDS
TAGAACATTAATCAATAACT+TGG 0.472348 8_4:+1550994 Msa1306590:three_prime_UTR
CTTTCCTCACAACACATGCT+TGG 0.474299 8_4:-1550390 None:intergenic
CTCAAAGCACTTCATAGAGA+TGG 0.475720 8_4:+1549706 Msa1306590:CDS
TATCTTTCGATTGGAGAAAG+AGG 0.494534 8_4:-1550907 None:intergenic
TCAAAGCACTTCATAGAGAT+GGG 0.495966 8_4:+1549707 Msa1306590:CDS
GCAGTGCGGGACAACTGATT+CGG 0.510006 8_4:+1549438 Msa1306590:CDS
CATTACAACAGCTTGTTGAA+AGG 0.512663 8_4:+1550476 Msa1306590:CDS
CACTTTGCTGACACTAGCTC+TGG 0.514081 8_4:+1549325 Msa1306590:CDS
TAAATTTCCCAGCAGTTCGC+AGG 0.515356 8_4:+1549468 Msa1306590:CDS
TGGGTAGTTGCTCATGGTGG+TGG 0.521127 8_4:+1550680 Msa1306590:three_prime_UTR
ATAATGTGCATGCAAATTGT+CGG 0.521272 8_4:-1549851 None:intergenic
TGTTGTAATGTTATTGGTGA+TGG 0.522358 8_4:-1550463 None:intergenic
CAATTTCTTCTGCATCAACA+TGG 0.524519 8_4:-1550531 None:intergenic
ACTTGGCCAGACGTGAATCA+TGG 0.524559 8_4:+1550500 Msa1306590:CDS
AGTCATCCATGATTCACGTC+TGG 0.529300 8_4:-1550506 None:intergenic
GGAGAAAAGAACAGCAGTGC+GGG 0.535867 8_4:+1549425 Msa1306590:CDS
GGTTTCCAATAGTAGGCAGT+TGG 0.538036 8_4:+1547898 Msa1306590:CDS
TCCAAGTCCTGCGAACTGCT+GGG 0.538815 8_4:-1549475 None:intergenic
ATCATAAATTTGATCACCGT+GGG 0.540757 8_4:+1550661 Msa1306590:three_prime_UTR
ATGTTATAAGGTCTTCAAGA+TGG 0.541014 8_4:-1550105 None:intergenic
GGCTCATTCGGATGGAAGAT+CGG 0.542039 8_4:+1547877 Msa1306590:CDS
CTTCGTGAGGCTCATTCGGA+TGG 0.545723 8_4:+1547869 Msa1306590:CDS
GAGATAAAACTTTCACACCT+TGG 0.547276 8_4:-1549663 None:intergenic
GGACAGAAGATCTCCTCCTC+TGG 0.548594 8_4:+1547805 Msa1306590:CDS
GAAGATCGGTTTCCAATAGT+AGG 0.549773 8_4:+1547891 Msa1306590:CDS
ATTATTGAGAGTGATGCATA+TGG 0.552597 8_4:+1550879 Msa1306590:three_prime_UTR
AGTTCGCAGGACTTGGAAGA+TGG 0.556294 8_4:+1549481 Msa1306590:CDS
GCAAGATCCTAACTCTCTGT+TGG 0.561889 8_4:+1549141 Msa1306590:CDS
ATCTTTCGATTGGAGAAAGA+GGG 0.568464 8_4:-1550906 None:intergenic
AATGTTATTGGTGATGGATG+AGG 0.570884 8_4:-1550457 None:intergenic
GTATGCTCCAGAAGAAGAAG+AGG 0.572437 8_4:+1548923 Msa1306590:CDS
TGGAATCTTTAATCTTCGTG+AGG 0.576871 8_4:+1547856 Msa1306590:CDS
TCCAATGAACAACAAGTCAA+AGG 0.581216 8_4:+1550138 Msa1306590:CDS
GTTGTTCATTGGATCCAAAG+AGG 0.590616 8_4:-1550128 None:intergenic
ACAGCTTGTTGAAAGGGACT+TGG 0.590760 8_4:+1550483 Msa1306590:CDS
GCAAAATAAATTGACCGTGA+AGG 0.591471 8_4:+1549639 Msa1306590:CDS
GTGTACGTGTGGAGAATGAT+CGG 0.594868 8_4:+1548960 Msa1306590:CDS
GATGATATACTCATGCAAGA+TGG 0.600077 8_4:-1550299 None:intergenic
ATGTTATTGGTGATGGATGA+GGG 0.600743 8_4:-1550456 None:intergenic
TCACCGTGGGTAGTTGCTCA+TGG 0.602050 8_4:+1550674 Msa1306590:three_prime_UTR
AGAAGAAATTGCAATGGAGG+TGG 0.605756 8_4:+1550543 Msa1306590:CDS
ACTAACATGGACATTAATTG+GGG 0.615194 8_4:-1549542 None:intergenic
TCATGGTGGTGGAGACCGCA+TGG 0.624096 8_4:+1550691 Msa1306590:three_prime_UTR
ACTTCCAAGCATGTGTTGTG+AGG 0.626643 8_4:+1550386 Msa1306590:CDS
CAAAACTTACATCAACATCA+GGG 0.632189 8_4:-1548211 None:intergenic
AAATTGACCGTGAAGGACCA+AGG 0.639782 8_4:+1549646 Msa1306590:CDS
TAGTTGTAAGAGTGTACGTG+TGG 0.641450 8_4:+1548949 Msa1306590:CDS
AATCATAAATTTGATCACCG+TGG 0.641648 8_4:+1550660 Msa1306590:three_prime_UTR
TGCAGAAGAAATTGCAATGG+AGG 0.645966 8_4:+1550540 Msa1306590:CDS
TCATTACTAAAAGTGGCCAC+AGG 0.656006 8_4:-1549778 None:intergenic
GCACATTATGATATTCCTAG+AGG 0.662018 8_4:+1549865 Msa1306590:CDS
CCACCATGAGCAACTACCCA+CGG 0.670027 8_4:-1550677 None:intergenic
CAAAGCACTTCATAGAGATG+GGG 0.670872 8_4:+1549708 Msa1306590:CDS
TGATGCAGAAGAAATTGCAA+TGG 0.674423 8_4:+1550537 Msa1306590:CDS
CCGTGGGTAGTTGCTCATGG+TGG 0.710283 8_4:+1550677 Msa1306590:three_prime_UTR
AGGAGAAAAGAACAGCAGTG+CGG 0.716182 8_4:+1549424 Msa1306590:CDS
CAGTTGGATAAACACACCAG+TGG 0.724616 8_4:+1547914 Msa1306590:CDS
CAAATGACTTAATGGCCATG+CGG 0.729978 8_4:-1550706 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGAAGAAAACTATTTTTTT+AGG - chr8_4:1547781-1547800 None:intergenic 15.0%
!! TATTATACTCATCTTAAATT+TGG + chr8_4:1548107-1548126 Msa1306590:intron 15.0%
!! TGTTAATAAATATCTAGAAA+GGG + chr8_4:1548458-1548477 Msa1306590:intron 15.0%
!!! ATTTGTAACTATTTTTTTAG+AGG - chr8_4:1549296-1549315 None:intergenic 15.0%
!! AAAAAACTAGTTATATAATG+AGG - chr8_4:1549895-1549914 None:intergenic 15.0%
!!! AAAATAGTTTTCTTCAATCA+TGG + chr8_4:1547784-1547803 Msa1306590:exon 20.0%
!!! TTCTTCTTTTTTAGCTTAAA+AGG + chr8_4:1547943-1547962 Msa1306590:intron 20.0%
!!! TGAATCAAATTTTGATTTTC+TGG + chr8_4:1548074-1548093 Msa1306590:intron 20.0%
!!! GAATCAAATTTTGATTTTCT+GGG + chr8_4:1548075-1548094 Msa1306590:intron 20.0%
!! CTGTTAATAAATATCTAGAA+AGG + chr8_4:1548457-1548476 Msa1306590:intron 20.0%
!! GTTAATAAATATCTAGAAAG+GGG + chr8_4:1548459-1548478 Msa1306590:intron 20.0%
!! TACTATTGTATTATGGTTAA+TGG - chr8_4:1548563-1548582 None:intergenic 20.0%
!!! TTTAAAATGTCATGTATAGT+TGG + chr8_4:1548805-1548824 Msa1306590:intron 20.0%
!! TACTAAATCATTCATGTAAT+GGG - chr8_4:1548871-1548890 None:intergenic 20.0%
!! TGGTAAAAATGTAAAAAAGT+TGG + chr8_4:1549501-1549520 Msa1306590:CDS 20.0%
!! TATTGATCAATTCTTTAGTA+TGG + chr8_4:1549969-1549988 Msa1306590:intron 20.0%
!!! TAAATTATATGTTTTCTTGC+AGG + chr8_4:1550034-1550053 Msa1306590:intron 20.0%
!!! TTCTAAAAATATCTTTCGAT+TGG - chr8_4:1550919-1550938 None:intergenic 20.0%
!! TAGAACATTAATCAATAACT+TGG + chr8_4:1550994-1551013 Msa1306590:three_prime_UTR 20.0%
! CAAATGATATTTATGGTTAC+TGG - chr8_4:1548040-1548059 None:intergenic 25.0%
! ACAGCTTCAAATGATATTTA+TGG - chr8_4:1548047-1548066 None:intergenic 25.0%
! AAGGCAATACTATTGTATTA+TGG - chr8_4:1548570-1548589 None:intergenic 25.0%
!! ATAGCGAAGGTTTAAAATAT+CGG - chr8_4:1548727-1548746 None:intergenic 25.0%
! ACTAAATCATTCATGTAATG+GGG - chr8_4:1548870-1548889 None:intergenic 25.0%
! CTACTAAATCATTCATGTAA+TGG - chr8_4:1548872-1548891 None:intergenic 25.0%
!!! TTTTTCAACAAAAACTCTCA+AGG + chr8_4:1549031-1549050 Msa1306590:CDS 25.0%
!!! AAAACAGTAGTAGTTTTGAT+AGG + chr8_4:1549239-1549258 Msa1306590:CDS 25.0%
! TACTAACATGGACATTAATT+GGG - chr8_4:1549546-1549565 None:intergenic 25.0%
!!! AACTTTTTTCACTACTAACA+TGG - chr8_4:1549558-1549577 None:intergenic 25.0%
! CAATACATAGATGATAAATG+AGG - chr8_4:1549954-1549973 None:intergenic 25.0%
! CCATCAATAAGTTTGATAAA+TGG - chr8_4:1550222-1550241 None:intergenic 25.0%
! CCATTTATCAAACTTATTGA+TGG + chr8_4:1550219-1550238 Msa1306590:CDS 25.0%
! GGATTTCTTGATGAAAAATA+GGG - chr8_4:1550364-1550383 None:intergenic 25.0%
! TGGATTTCTTGATGAAAAAT+AGG - chr8_4:1550365-1550384 None:intergenic 25.0%
TGGTTAACCAAAAATGTGAA+TGG + chr8_4:1547825-1547844 Msa1306590:CDS 30.0%
! ACTCATCTTAAATTTGGAAC+TGG + chr8_4:1548113-1548132 Msa1306590:intron 30.0%
CAAAACTTACATCAACATCA+GGG - chr8_4:1548214-1548233 None:intergenic 30.0%
TCAAAACTTACATCAACATC+AGG - chr8_4:1548215-1548234 None:intergenic 30.0%
TTTGTAGCAGCTATTGTAAA+AGG + chr8_4:1548261-1548280 Msa1306590:intron 30.0%
!!! TTAAACCCTTTTTAAAGCCT+CGG + chr8_4:1548335-1548354 Msa1306590:intron 30.0%
AAATGTACTAACAACTCGAA+TGG - chr8_4:1548430-1548449 None:intergenic 30.0%
ACTACTTCAGTAACTTAGAA+AGG - chr8_4:1548515-1548534 None:intergenic 30.0%
! ATTTAGTAGCATAGCATTGA+TGG + chr8_4:1548883-1548902 Msa1306590:intron 30.0%
! TTGTCAGCCAAATCAATTTT+TGG + chr8_4:1549069-1549088 Msa1306590:CDS 30.0%
ACAGCATCCAAAAATTGATT+TGG - chr8_4:1549079-1549098 None:intergenic 30.0%
!! ACAGGTTTTATATTCGAACA+AGG + chr8_4:1549099-1549118 Msa1306590:CDS 30.0%
! AAGCCTTCAAATTTTGCATT+TGG + chr8_4:1549364-1549383 Msa1306590:CDS 30.0%
TCACCAAATGCAAAATTTGA+AGG - chr8_4:1549370-1549389 None:intergenic 30.0%
ACTAACATGGACATTAATTG+GGG - chr8_4:1549545-1549564 None:intergenic 30.0%
CTACTAACATGGACATTAAT+TGG - chr8_4:1549547-1549566 None:intergenic 30.0%
!!! TTTGAAGTTTTTCAAGCTGA+AGG + chr8_4:1549576-1549595 Msa1306590:CDS 30.0%
AAAAATCAAAGATTTGCCTG+TGG + chr8_4:1549762-1549781 Msa1306590:CDS 30.0%
TTGCAACTCATTACTAAAAG+TGG - chr8_4:1549788-1549807 None:intergenic 30.0%
! AGTAATGAGTTGCAAGTTTT+TGG + chr8_4:1549793-1549812 Msa1306590:CDS 30.0%
ATAATGTGCATGCAAATTGT+CGG - chr8_4:1549854-1549873 None:intergenic 30.0%
ATTCTTTAGTATGGTCTGAA+AGG + chr8_4:1549978-1549997 Msa1306590:intron 30.0%
ATGTTATAAGGTCTTCAAGA+TGG - chr8_4:1550108-1550127 None:intergenic 30.0%
TTTGATAAATGGCTCTTCAT+AGG - chr8_4:1550211-1550230 None:intergenic 30.0%
GTATATCATCGAATGTTTCA+TGG + chr8_4:1550312-1550331 Msa1306590:CDS 30.0%
TGTTGTAATGTTATTGGTGA+TGG - chr8_4:1550466-1550485 None:intergenic 30.0%
ACAAGCTGTTGTAATGTTAT+TGG - chr8_4:1550472-1550491 None:intergenic 30.0%
!! ATTACAACAGCTTGTTGAAA+GGG + chr8_4:1550477-1550496 Msa1306590:CDS 30.0%
!!! GAAAAATGTTTTGGAAACAC+TGG + chr8_4:1550567-1550586 Msa1306590:CDS 30.0%
AATCATAAATTTGATCACCG+TGG + chr8_4:1550660-1550679 Msa1306590:three_prime_UTR 30.0%
ATCATAAATTTGATCACCGT+GGG + chr8_4:1550661-1550680 Msa1306590:three_prime_UTR 30.0%
ACCTAAGACAAATGACTTAA+TGG - chr8_4:1550717-1550736 None:intergenic 30.0%
!! CATTCTATTTCTATCTTCCA+TGG - chr8_4:1550741-1550760 None:intergenic 30.0%
ATTATTGAGAGTGATGCATA+TGG + chr8_4:1550879-1550898 Msa1306590:three_prime_UTR 30.0%
!!! TCACATTTTTGGTTAACCAG+AGG - chr8_4:1547824-1547843 None:intergenic 35.0%
! ACATTCGCCATTCACATTTT+TGG - chr8_4:1547835-1547854 None:intergenic 35.0%
AAATGTGAATGGCGAATGTT+TGG + chr8_4:1547836-1547855 Msa1306590:CDS 35.0%
TGGAATCTTTAATCTTCGTG+AGG + chr8_4:1547856-1547875 Msa1306590:CDS 35.0%
TTTATCCAACTGCCTACTAT+TGG - chr8_4:1547906-1547925 None:intergenic 35.0%
AAAAGAAGAACTCTTACCAC+TGG - chr8_4:1547933-1547952 None:intergenic 35.0%
TAGACTTTCAGTGCATACAA+TGG - chr8_4:1548008-1548027 None:intergenic 35.0%
TCATACATGCTTGTGATTTC+AGG - chr8_4:1548312-1548331 None:intergenic 35.0%
AATAGTATTGCCTTGCTTTG+AGG + chr8_4:1548576-1548595 Msa1306590:intron 35.0%
!! ATGAAACTAGTTGATAGCGA+AGG - chr8_4:1548740-1548759 None:intergenic 35.0%
ACTATAACCTCTTCTTCTTC+TGG - chr8_4:1548933-1548952 None:intergenic 35.0%
AAAAACTCTCAAGGCAAAGA+TGG + chr8_4:1549040-1549059 Msa1306590:CDS 35.0%
!! TCAATTTTTGGATGCTGTAC+AGG + chr8_4:1549081-1549100 Msa1306590:CDS 35.0%
! TGTTTTACCAACAGAGAGTT+AGG - chr8_4:1549151-1549170 None:intergenic 35.0%
TAAGACATGTCATGAGAGTA+AGG + chr8_4:1549404-1549423 Msa1306590:CDS 35.0%
GCAAAATAAATTGACCGTGA+AGG + chr8_4:1549639-1549658 Msa1306590:CDS 35.0%
GAGATAAAACTTTCACACCT+TGG - chr8_4:1549666-1549685 None:intergenic 35.0%
ATCTCATAAAAAGCAGCAGA+TGG + chr8_4:1549681-1549700 Msa1306590:CDS 35.0%
! TCAAAGCACTTCATAGAGAT+GGG + chr8_4:1549707-1549726 Msa1306590:CDS 35.0%
GCACATTATGATATTCCTAG+AGG + chr8_4:1549865-1549884 Msa1306590:CDS 35.0%
ATATAATGAGGCATACCTCT+AGG - chr8_4:1549883-1549902 None:intergenic 35.0%
AGACCTTATAACATCCTCTT+TGG + chr8_4:1550114-1550133 Msa1306590:CDS 35.0%
GATCCAAAGAGGATGTTATA+AGG - chr8_4:1550120-1550139 None:intergenic 35.0%
TCCAATGAACAACAAGTCAA+AGG + chr8_4:1550138-1550157 Msa1306590:CDS 35.0%
!! TCCTTTGACTTGTTGTTCAT+TGG - chr8_4:1550142-1550161 None:intergenic 35.0%
!! TCCACTTTTGATGAAGTGAA+TGG + chr8_4:1550250-1550269 Msa1306590:CDS 35.0%
TCCATTCACTTCATCAAAAG+TGG - chr8_4:1550254-1550273 None:intergenic 35.0%
AGATGGTACTGTCAAAAAGT+TGG - chr8_4:1550285-1550304 None:intergenic 35.0%
GATGATATACTCATGCAAGA+TGG - chr8_4:1550302-1550321 None:intergenic 35.0%
AGGGTGAAAAATCACTATTC+TGG - chr8_4:1550345-1550364 None:intergenic 35.0%
! ATGTGTTGTGAGGAAAGTTT+TGG + chr8_4:1550396-1550415 Msa1306590:CDS 35.0%
!! ATGTTATTGGTGATGGATGA+GGG - chr8_4:1550459-1550478 None:intergenic 35.0%
!! AATGTTATTGGTGATGGATG+AGG - chr8_4:1550460-1550479 None:intergenic 35.0%
!! CATTACAACAGCTTGTTGAA+AGG + chr8_4:1550476-1550495 Msa1306590:CDS 35.0%
CAATTTCTTCTGCATCAACA+TGG - chr8_4:1550534-1550553 None:intergenic 35.0%
TGATGCAGAAGAAATTGCAA+TGG + chr8_4:1550537-1550556 Msa1306590:CDS 35.0%
!!! TGTTTTGGAAACACTGGTTT+TGG + chr8_4:1550573-1550592 Msa1306590:CDS 35.0%
GCCATTAAGTCATTTGTCTT+AGG + chr8_4:1550713-1550732 Msa1306590:three_prime_UTR 35.0%
ATCTTTCGATTGGAGAAAGA+GGG - chr8_4:1550909-1550928 None:intergenic 35.0%
TATCTTTCGATTGGAGAAAG+AGG - chr8_4:1550910-1550929 None:intergenic 35.0%
!!! CATTTTTGGTTAACCAGAGG+AGG - chr8_4:1547821-1547840 None:intergenic 40.0%
TAATCTTCGTGAGGCTCATT+CGG + chr8_4:1547865-1547884 Msa1306590:CDS 40.0%
! GAAGATCGGTTTCCAATAGT+AGG + chr8_4:1547891-1547910 Msa1306590:CDS 40.0%
AAGCACATCTGAACCAATTC+TGG - chr8_4:1548171-1548190 None:intergenic 40.0%
!! CTAGTCCGAGGCTTTAAAAA+GGG - chr8_4:1548343-1548362 None:intergenic 40.0%
!! ACTAGTCCGAGGCTTTAAAA+AGG - chr8_4:1548344-1548363 None:intergenic 40.0%
!!! TTTTTAAAGCCTCGGACTAG+TGG + chr8_4:1548343-1548362 Msa1306590:intron 40.0%
AGAAAGGGGAAAGACTTTGA+AGG + chr8_4:1548473-1548492 Msa1306590:intron 40.0%
ATCACTAGATCCTCAAAGCA+AGG - chr8_4:1548589-1548608 None:intergenic 40.0%
! CTTTGAGGATCTAGTGATCA+AGG + chr8_4:1548591-1548610 Msa1306590:intron 40.0%
ACATAAAACTCGACATGACG+TGG - chr8_4:1548636-1548655 None:intergenic 40.0%
ATCGGTCATAGTAACTGTTG+TGG - chr8_4:1548709-1548728 None:intergenic 40.0%
TTGGCAAGATGCAGCAAAAA+TGG + chr8_4:1548824-1548843 Msa1306590:intron 40.0%
! TCATTCATGTAATGGGGTGA+GGG - chr8_4:1548864-1548883 None:intergenic 40.0%
! ATCATTCATGTAATGGGGTG+AGG - chr8_4:1548865-1548884 None:intergenic 40.0%
!!! GATGGAAGAATTTTGACTGC+AGG + chr8_4:1548901-1548920 Msa1306590:intron 40.0%
! TAGTTGTAAGAGTGTACGTG+TGG + chr8_4:1548949-1548968 Msa1306590:CDS 40.0%
GAATGATCGGATAGCAGATT+TGG + chr8_4:1548973-1548992 Msa1306590:CDS 40.0%
GAACTGCTGGGAAATTTACT+TGG - chr8_4:1549466-1549485 None:intergenic 40.0%
! CATCTCTATGAAGTGCTTTG+AGG - chr8_4:1549708-1549727 None:intergenic 40.0%
! CTCAAAGCACTTCATAGAGA+TGG + chr8_4:1549706-1549725 Msa1306590:CDS 40.0%
! CAAAGCACTTCATAGAGATG+GGG + chr8_4:1549708-1549727 Msa1306590:CDS 40.0%
TCATTACTAAAAGTGGCCAC+AGG - chr8_4:1549781-1549800 None:intergenic 40.0%
! TGTTTTCTTGCAGGAACAGA+TGG + chr8_4:1550043-1550062 Msa1306590:intron 40.0%
! GTTTTCTTGCAGGAACAGAT+GGG + chr8_4:1550044-1550063 Msa1306590:intron 40.0%
GTTGTTCATTGGATCCAAAG+AGG - chr8_4:1550131-1550150 None:intergenic 40.0%
ACAACACATGCTTGGAAGTT+TGG - chr8_4:1550385-1550404 None:intergenic 40.0%
TGCAGAAGAAATTGCAATGG+AGG + chr8_4:1550540-1550559 Msa1306590:CDS 40.0%
AGAAGAAATTGCAATGGAGG+TGG + chr8_4:1550543-1550562 Msa1306590:CDS 40.0%
! GGAGGTGGAGAAAAATGTTT+TGG + chr8_4:1550558-1550577 Msa1306590:CDS 40.0%
CAAATGACTTAATGGCCATG+CGG - chr8_4:1550709-1550728 None:intergenic 40.0%
GTCATTTGTCTTAGGTTCCA+TGG + chr8_4:1550721-1550740 Msa1306590:three_prime_UTR 40.0%
GGTTTCCAATAGTAGGCAGT+TGG + chr8_4:1547898-1547917 Msa1306590:CDS 45.0%
CAGTTGGATAAACACACCAG+TGG + chr8_4:1547914-1547933 Msa1306590:CDS 45.0%
!!! GGTGATTTTTTCCAAGCTGC+AGG + chr8_4:1548134-1548153 Msa1306590:intron 45.0%
! TTTTTCCAAGCTGCAGGCAA+TGG + chr8_4:1548140-1548159 Msa1306590:intron 45.0%
! TTTTCCAAGCTGCAGGCAAT+GGG + chr8_4:1548141-1548160 Msa1306590:intron 45.0%
GGCAATGGGAAATCCAGAAT+TGG + chr8_4:1548155-1548174 Msa1306590:intron 45.0%
TTACCAAAACCACTAGTCCG+AGG - chr8_4:1548355-1548374 None:intergenic 45.0%
! CATTCATGTAATGGGGTGAG+GGG - chr8_4:1548863-1548882 None:intergenic 45.0%
GTATGCTCCAGAAGAAGAAG+AGG + chr8_4:1548923-1548942 Msa1306590:CDS 45.0%
GTGTACGTGTGGAGAATGAT+CGG + chr8_4:1548960-1548979 Msa1306590:CDS 45.0%
GCAAGATCCTAACTCTCTGT+TGG + chr8_4:1549141-1549160 Msa1306590:CDS 45.0%
AGGAGAAAAGAACAGCAGTG+CGG + chr8_4:1549424-1549443 Msa1306590:CDS 45.0%
TAAATTTCCCAGCAGTTCGC+AGG + chr8_4:1549468-1549487 Msa1306590:CDS 45.0%
AAATTGACCGTGAAGGACCA+AGG + chr8_4:1549646-1549665 Msa1306590:CDS 45.0%
TTTCACACCTTGGTCCTTCA+CGG - chr8_4:1549656-1549675 None:intergenic 45.0%
ACTTCCAAGCATGTGTTGTG+AGG + chr8_4:1550386-1550405 Msa1306590:CDS 45.0%
CTTTCCTCACAACACATGCT+TGG - chr8_4:1550393-1550412 None:intergenic 45.0%
!! ACAGCTTGTTGAAAGGGACT+TGG + chr8_4:1550483-1550502 Msa1306590:CDS 45.0%
AGTCATCCATGATTCACGTC+TGG - chr8_4:1550509-1550528 None:intergenic 45.0%
GGCTCATTCGGATGGAAGAT+CGG + chr8_4:1547877-1547896 Msa1306590:CDS 50.0%
ATTTCCCATTGCCTGCAGCT+TGG - chr8_4:1548148-1548167 None:intergenic 50.0%
!!! AAGCCTCGGACTAGTGGTTT+TGG + chr8_4:1548349-1548368 Msa1306590:intron 50.0%
CACTTTGCTGACACTAGCTC+TGG + chr8_4:1549325-1549344 Msa1306590:CDS 50.0%
GGAGAAAAGAACAGCAGTGC+GGG + chr8_4:1549425-1549444 Msa1306590:CDS 50.0%
AGTTCGCAGGACTTGGAAGA+TGG + chr8_4:1549481-1549500 Msa1306590:CDS 50.0%
ACTTGGCCAGACGTGAATCA+TGG + chr8_4:1550500-1550519 Msa1306590:CDS 50.0%
GGACAGAAGATCTCCTCCTC+TGG + chr8_4:1547805-1547824 Msa1306590:CDS 55.0%
CTTCGTGAGGCTCATTCGGA+TGG + chr8_4:1547869-1547888 Msa1306590:CDS 55.0%
GTGATCAAGGTCTGCGACCA+CGG + chr8_4:1548604-1548623 Msa1306590:intron 55.0%
ACATGACGTGGACCAAACCG+TGG - chr8_4:1548624-1548643 None:intergenic 55.0%
CCTCAATCGTGGTCGTGTTG+CGG - chr8_4:1548667-1548686 None:intergenic 55.0%
GTGGTCAAATGAGCCCGATG+CGG - chr8_4:1548690-1548709 None:intergenic 55.0%
! TGTAATGGGGTGAGGGGAGT+GGG - chr8_4:1548857-1548876 None:intergenic 55.0%
! ATGTAATGGGGTGAGGGGAG+TGG - chr8_4:1548858-1548877 None:intergenic 55.0%
GCAGTGCGGGACAACTGATT+CGG + chr8_4:1549438-1549457 Msa1306590:CDS 55.0%
TCCAAGTCCTGCGAACTGCT+GGG - chr8_4:1549478-1549497 None:intergenic 55.0%
TTCCAAGTCCTGCGAACTGC+TGG - chr8_4:1549479-1549498 None:intergenic 55.0%
TCACCGTGGGTAGTTGCTCA+TGG + chr8_4:1550674-1550693 Msa1306590:three_prime_UTR 55.0%
CCACCATGAGCAACTACCCA+CGG - chr8_4:1550680-1550699 None:intergenic 55.0%
TGGGTAGTTGCTCATGGTGG+TGG + chr8_4:1550680-1550699 Msa1306590:three_prime_UTR 55.0%
CAAGGTCTGCGACCACGGTT+TGG + chr8_4:1548609-1548628 Msa1306590:intron 60.0%
CCGCAACACGACCACGATTG+AGG + chr8_4:1548664-1548683 Msa1306590:intron 60.0%
GACCACGATTGAGGCCGCAT+CGG + chr8_4:1548673-1548692 Msa1306590:intron 60.0%
ACCACGATTGAGGCCGCATC+GGG + chr8_4:1548674-1548693 Msa1306590:intron 60.0%
TCCCAGCAGTTCGCAGGACT+TGG + chr8_4:1549474-1549493 Msa1306590:CDS 60.0%
CCGTGGGTAGTTGCTCATGG+TGG + chr8_4:1550677-1550696 Msa1306590:three_prime_UTR 60.0%
!! TCATGGTGGTGGAGACCGCA+TGG + chr8_4:1550691-1550710 Msa1306590:three_prime_UTR 60.0%
GCCCGATGCGGCCTCAATCG+TGG - chr8_4:1548678-1548697 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 1547755 1551041 1547755 ID=Msa1306590;Name=Msa1306590
chr8_4 mRNA 1547755 1551041 1547755 ID=Msa1306590-mRNA-1;Parent=Msa1306590;Name=Msa1306590-mRNA-1;_AED=0.00;_eAED=0.00;_QI=48|1|1|1|1|1|4|417|577
chr8_4 exon 1547755 1547935 1547755 ID=Msa1306590-mRNA-1:exon:390;Parent=Msa1306590-mRNA-1
chr8_4 exon 1548156 1548223 1548156 ID=Msa1306590-mRNA-1:exon:391;Parent=Msa1306590-mRNA-1
chr8_4 exon 1548923 1549886 1548923 ID=Msa1306590-mRNA-1:exon:392;Parent=Msa1306590-mRNA-1
chr8_4 exon 1550056 1551041 1550056 ID=Msa1306590-mRNA-1:exon:393;Parent=Msa1306590-mRNA-1
chr8_4 five_prime_UTR 1547755 1547802 1547755 ID=Msa1306590-mRNA-1:five_prime_utr;Parent=Msa1306590-mRNA-1
chr8_4 CDS 1547803 1547935 1547803 ID=Msa1306590-mRNA-1:cds;Parent=Msa1306590-mRNA-1
chr8_4 CDS 1548156 1548223 1548156 ID=Msa1306590-mRNA-1:cds;Parent=Msa1306590-mRNA-1
chr8_4 CDS 1548923 1549886 1548923 ID=Msa1306590-mRNA-1:cds;Parent=Msa1306590-mRNA-1
chr8_4 CDS 1550056 1550624 1550056 ID=Msa1306590-mRNA-1:cds;Parent=Msa1306590-mRNA-1
chr8_4 three_prime_UTR 1550625 1551041 1550625 ID=Msa1306590-mRNA-1:three_prime_utr;Parent=Msa1306590-mRNA-1
Gene Sequence

>Msa1306590

ATGGACAGAAGATCTCCTCCTCTGGTTAACCAAAAATGTGAATGGCGAATGTTTGGAATCTTTAATCTTCGTGAGGCTCATTCGGATGGAAGATCGGTTTCCAATAGTAGGCAGTTGGATAAACACACCAGTGGCAATGGGAAATCCAGAATTGGTTCAGATGTGCTTAGCACAGTTGATGAAAAGTACCCTGATGTTGATGTATGCTCCAGAAGAAGAAGAGGTTATAGTTGTAAGAGTGTACGTGTGGAGAATGATCGGATAGCAGATTTGGAAAATGAAGTAACAAAAATGATTGTTAATCAGAGATTTTTCAACAAAAACTCTCAAGGCAAAGATGGTGCAGATTGTCAGCCAAATCAATTTTTGGATGCTGTACAGGTTTTATATTCGAACAAGGAACTTTTCACAAAACTTCTGCAAGATCCTAACTCTCTGTTGGTAAAACAGATTCATGACATACAGAAAACTCAAGTGAAAGCAGAACAAAATGAAGTAATAAGATTGAATAAAGCTCAAAACAGTAGTAGTTTTGATAGGTTTAATTTGAGTTCAAATTGTGAGTCTCAGTCCTCTAAAAAAATAGTTACAAATAATGCACAACACTTTGCTGACACTAGCTCTGGCAATGCTCAAAATATTAAGCCTTCAAATTTTGCATTTGGTGAAATAAAGAGAAAGTTAAGACATGTCATGAGAGTAAGGAGAAAAGAACAGCAGTGCGGGACAACTGATTCGGCGCCAAGTAAATTTCCCAGCAGTTCGCAGGACTTGGAAGATGGTAAAAATGTAAAAAAGTTGGACACTTCTGAAAGAAATTCCCCAATTAATGTCCATGTTAGTAGTGAAAAAAGTTTGAAGTTTTTCAAGCTGAAGGATTCTGAGTCAAGTATGAGACAAGAAGAAGTTGCTTCTGAGCAAAATAAATTGACCGTGAAGGACCAAGGTGTGAAAGTTTTATCTCATAAAAAGCAGCAGATGGTCCTCAAAGCACTTCATAGAGATGGGGAAAGTTGCTCTTATAGTAGTTCTTCAGCTCAAAAAATCAAAGATTTGCCTGTGGCCACTTTTAGTAATGAGTTGCAAGTTTTTGGTGCTGCAGATATTAGTGTCAATAAGAGTCTTTCTGCCGACAATTTGCATGCACATTATGATATTCCTAGAGGAACAGATGGGTCACTAGTACAAGTTGATTACGATAGATTTGAAGAGAACCATCTTGAAGACCTTATAACATCCTCTTTGGATCCAATGAACAACAAGTCAAAGGATATCATAAGTGAAGTTCTGCAGACTTTCAGCTTGAAATGTGATGAACCTATGAAGAGCCATTTATCAAACTTATTGATGGATTCTTCATCCACTTTTGATGAAGTGAATGGATTGACTGACCAACTTTTTGACAGTACCATCTTGCATGAGTATATCATCGAATGTTTCATGGAGTTATACCAGAATAGTGATTTTTCACCCTATTTTTCATCAAGAAATCCAAACTTCCAAGCATGTGTTGTGAGGAAAGTTTTGGTTAGACAGATTAATGAACTTGTTAAACTTCACTTTTTCCCTCATCCATCACCAATAACATTACAACAGCTTGTTGAAAGGGACTTGGCCAGACGTGAATCATGGATGACTATCCATGTTGATGCAGAAGAAATTGCAATGGAGGTGGAGAAAAATGTTTTGGAAACACTGGTTTTGGAAATCGTGTCTGAGATGACTATATCATAG

Protein sequence

>Msa1306590

MDRRSPPLVNQKCEWRMFGIFNLREAHSDGRSVSNSRQLDKHTSGNGKSRIGSDVLSTVDEKYPDVDVCSRRRRGYSCKSVRVENDRIADLENEVTKMIVNQRFFNKNSQGKDGADCQPNQFLDAVQVLYSNKELFTKLLQDPNSLLVKQIHDIQKTQVKAEQNEVIRLNKAQNSSSFDRFNLSSNCESQSSKKIVTNNAQHFADTSSGNAQNIKPSNFAFGEIKRKLRHVMRVRRKEQQCGTTDSAPSKFPSSSQDLEDGKNVKKLDTSERNSPINVHVSSEKSLKFFKLKDSESSMRQEEVASEQNKLTVKDQGVKVLSHKKQQMVLKALHRDGESCSYSSSSAQKIKDLPVATFSNELQVFGAADISVNKSLSADNLHAHYDIPRGTDGSLVQVDYDRFEENHLEDLITSSLDPMNNKSKDIISEVLQTFSLKCDEPMKSHLSNLLMDSSSTFDEVNGLTDQLFDSTILHEYIIECFMELYQNSDFSPYFSSRNPNFQACVVRKVLVRQINELVKLHFFPHPSPITLQQLVERDLARRESWMTIHVDAEEIAMEVEKNVLETLVLEIVSEMTIS*