Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0884670 | XP_024641367.1 | 89.873 | 237 | 15 | 2 | 1 | 236 | 1 | 229 | 1.96e-144 | 412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0884670 | sp|Q54FR4|PX24D_DICDI | 36.310 | 168 | 103 | 3 | 63 | 227 | 15 | 181 | 1.05e-29 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0884670 | A0A396HEU2 | 89.873 | 237 | 15 | 2 | 1 | 236 | 1 | 229 | 9.36e-145 | 412 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa0884670 | 0.825928 | 3.586279e-54 | -8.615850e-47 |
| Msa0006070 | Msa0884670 | 0.805005 | 1.644698e-49 | -8.615850e-47 |
| Msa0006110 | Msa0884670 | 0.807220 | 5.621402e-50 | -8.615850e-47 |
| Msa0011170 | Msa0884670 | 0.815965 | 7.053753e-52 | -8.615850e-47 |
| Msa0011960 | Msa0884670 | 0.805481 | 1.307713e-49 | -8.615850e-47 |
| Msa0014710 | Msa0884670 | 0.803406 | 3.539710e-49 | -8.615850e-47 |
| Msa0017510 | Msa0884670 | 0.823451 | 1.375268e-53 | -8.615850e-47 |
| Msa0036140 | Msa0884670 | 0.816018 | 6.863605e-52 | -8.615850e-47 |
| Msa0054480 | Msa0884670 | 0.828010 | 1.140084e-54 | -8.615850e-47 |
| Msa0078900 | Msa0884670 | 0.811323 | 7.415476e-51 | -8.615850e-47 |
| Msa0080090 | Msa0884670 | 0.821653 | 3.602142e-53 | -8.615850e-47 |
| Msa0084080 | Msa0884670 | 0.800968 | 1.123673e-48 | -8.615850e-47 |
| Msa0084380 | Msa0884670 | 0.819125 | 1.368814e-52 | -8.615850e-47 |
| Msa0086760 | Msa0884670 | 0.809720 | 1.646065e-50 | -8.615850e-47 |
| Msa0089630 | Msa0884670 | 0.811636 | 6.340225e-51 | -8.615850e-47 |
| Msa0090360 | Msa0884670 | 0.812764 | 3.598108e-51 | -8.615850e-47 |
| Msa0095560 | Msa0884670 | 0.803193 | 3.917582e-49 | -8.615850e-47 |
| Msa0101440 | Msa0884670 | 0.801624 | 8.248670e-49 | -8.615850e-47 |
| Msa0114060 | Msa0884670 | 0.813973 | 1.951533e-51 | -8.615850e-47 |
| Msa0607050 | Msa0884670 | 0.810493 | 1.121737e-50 | -8.615850e-47 |
| Msa0610430 | Msa0884670 | 0.801752 | 7.762352e-49 | -8.615850e-47 |
| Msa0613440 | Msa0884670 | 0.804586 | 2.012085e-49 | -8.615850e-47 |
| Msa0617640 | Msa0884670 | 0.810908 | 9.123343e-51 | -8.615850e-47 |
| Msa0625720 | Msa0884670 | 0.864923 | 8.569883e-65 | -8.615850e-47 |
| Msa0643350 | Msa0884670 | 0.804528 | 2.069304e-49 | -8.615850e-47 |
| Msa0657970 | Msa0884670 | 0.804292 | 2.317062e-49 | -8.615850e-47 |
| Msa0661650 | Msa0884670 | 0.836766 | 7.720283e-57 | -8.615850e-47 |
| Msa0663390 | Msa0884670 | 0.856741 | 2.620711e-62 | -8.615850e-47 |
| Msa0669320 | Msa0884670 | 0.813099 | 3.037963e-51 | -8.615850e-47 |
| Msa0672690 | Msa0884670 | 0.811837 | 5.733093e-51 | -8.615850e-47 |
| Msa0673460 | Msa0884670 | 0.819175 | 1.333492e-52 | -8.615850e-47 |
| Msa0680660 | Msa0884670 | 0.827159 | 1.824525e-54 | -8.615850e-47 |
| Msa0681250 | Msa0884670 | 0.823518 | 1.326969e-53 | -8.615850e-47 |
| Msa0681270 | Msa0884670 | 0.835886 | 1.291992e-56 | -8.615850e-47 |
| Msa0682840 | Msa0884670 | 0.832349 | 9.943062e-56 | -8.615850e-47 |
| Msa0683510 | Msa0884670 | 0.807354 | 5.267322e-50 | -8.615850e-47 |
| Msa0688270 | Msa0884670 | 0.822813 | 1.938142e-53 | -8.615850e-47 |
| Msa0690860 | Msa0884670 | 0.804532 | 2.064742e-49 | -8.615850e-47 |
| Msa0691380 | Msa0884670 | 0.809604 | 1.743230e-50 | -8.615850e-47 |
| Msa0692040 | Msa0884670 | -0.804393 | 2.206872e-49 | -8.615850e-47 |
| Msa0696390 | Msa0884670 | 0.812949 | 3.277652e-51 | -8.615850e-47 |
| Msa0701900 | Msa0884670 | 0.802921 | 4.459663e-49 | -8.615850e-47 |
| Msa0707250 | Msa0884670 | 0.814503 | 1.490159e-51 | -8.615850e-47 |
| Msa0711780 | Msa0884670 | 0.806741 | 7.100579e-50 | -8.615850e-47 |
| Msa0715700 | Msa0884670 | 0.824059 | 9.906516e-54 | -8.615850e-47 |
| Msa0724210 | Msa0884670 | 0.829810 | 4.178287e-55 | -8.615850e-47 |
| Msa0731940 | Msa0884670 | 0.823186 | 1.585808e-53 | -8.615850e-47 |
| Msa0767300 | Msa0884670 | 0.802719 | 4.909712e-49 | -8.615850e-47 |
| Msa0793800 | Msa0884670 | 0.807361 | 5.247131e-50 | -8.615850e-47 |
| Msa0794670 | Msa0884670 | 0.805138 | 1.542968e-49 | -8.615850e-47 |
| Msa0794730 | Msa0884670 | 0.804647 | 1.953441e-49 | -8.615850e-47 |
| Msa0796700 | Msa0884670 | 0.804896 | 1.733246e-49 | -8.615850e-47 |
| Msa0802830 | Msa0884670 | 0.804257 | 2.355625e-49 | -8.615850e-47 |
| Msa0803890 | Msa0884670 | 0.800273 | 1.557200e-48 | -8.615850e-47 |
| Msa0810220 | Msa0884670 | 0.802297 | 5.998124e-49 | -8.615850e-47 |
| Msa0816710 | Msa0884670 | 0.821731 | 3.454135e-53 | -8.615850e-47 |
| Msa0832340 | Msa0884670 | 0.808923 | 2.439971e-50 | -8.615850e-47 |
| Msa0124060 | Msa0884670 | 0.804417 | 2.182039e-49 | -8.615850e-47 |
| Msa0145440 | Msa0884670 | 0.802443 | 5.597556e-49 | -8.615850e-47 |
| Msa0150820 | Msa0884670 | 0.800905 | 1.157292e-48 | -8.615850e-47 |
| Msa0157290 | Msa0884670 | 0.823790 | 1.145721e-53 | -8.615850e-47 |
| Msa0160550 | Msa0884670 | 0.821358 | 4.212421e-53 | -8.615850e-47 |
| Msa0171540 | Msa0884670 | 0.805557 | 1.260142e-49 | -8.615850e-47 |
| Msa0178930 | Msa0884670 | 0.806626 | 7.507808e-50 | -8.615850e-47 |
| Msa0180500 | Msa0884670 | 0.801959 | 7.037898e-49 | -8.615850e-47 |
| Msa0184040 | Msa0884670 | 0.803373 | 3.595133e-49 | -8.615850e-47 |
| Msa0205230 | Msa0884670 | 0.803281 | 3.756418e-49 | -8.615850e-47 |
| Msa0206010 | Msa0884670 | 0.812345 | 4.442308e-51 | -8.615850e-47 |
| Msa0211150 | Msa0884670 | 0.825235 | 5.235698e-54 | -8.615850e-47 |
| Msa0367870 | Msa0884670 | 0.811934 | 5.461676e-51 | -8.615850e-47 |
| Msa0376350 | Msa0884670 | 0.807732 | 4.377498e-50 | -8.615850e-47 |
| Msa0383800 | Msa0884670 | 0.829358 | 5.383274e-55 | -8.615850e-47 |
| Msa0386090 | Msa0884670 | 0.800272 | 1.557756e-48 | -8.615850e-47 |
| Msa0411390 | Msa0884670 | 0.811914 | 5.516724e-51 | -8.615850e-47 |
| Msa0417270 | Msa0884670 | 0.828703 | 7.756206e-55 | -8.615850e-47 |
| Msa0424790 | Msa0884670 | 0.803727 | 3.036252e-49 | -8.615850e-47 |
| Msa0428080 | Msa0884670 | 0.817063 | 4.004641e-52 | -8.615850e-47 |
| Msa0434180 | Msa0884670 | 0.813206 | 2.878277e-51 | -8.615850e-47 |
| Msa0440400 | Msa0884670 | 0.803036 | 4.221425e-49 | -8.615850e-47 |
| Msa0440750 | Msa0884670 | 0.800195 | 1.614964e-48 | -8.615850e-47 |
| Msa0453640 | Msa0884670 | 0.817923 | 2.562914e-52 | -8.615850e-47 |
| Msa0455760 | Msa0884670 | 0.806470 | 8.099782e-50 | -8.615850e-47 |
| Msa0464680 | Msa0884670 | 0.803677 | 3.110494e-49 | -8.615850e-47 |
| Msa0467060 | Msa0884670 | 0.802011 | 6.869851e-49 | -8.615850e-47 |
| Msa0481530 | Msa0884670 | 0.854960 | 8.688146e-62 | -8.615850e-47 |
| Msa0243890 | Msa0884670 | 0.805493 | 1.299811e-49 | -8.615850e-47 |
| Msa0257460 | Msa0884670 | 0.801597 | 8.354830e-49 | -8.615850e-47 |
| Msa0260680 | Msa0884670 | 0.820019 | 8.554218e-53 | -8.615850e-47 |
| Msa0267370 | Msa0884670 | 0.817620 | 2.999976e-52 | -8.615850e-47 |
| Msa0279220 | Msa0884670 | 0.806647 | 7.430608e-50 | -8.615850e-47 |
| Msa0280090 | Msa0884670 | 0.813955 | 1.969115e-51 | -8.615850e-47 |
| Msa0297050 | Msa0884670 | 0.825434 | 4.697275e-54 | -8.615850e-47 |
| Msa0305190 | Msa0884670 | 0.807174 | 5.750718e-50 | -8.615850e-47 |
| Msa0309750 | Msa0884670 | 0.802334 | 5.893048e-49 | -8.615850e-47 |
| Msa0309770 | Msa0884670 | 0.818257 | 2.154519e-52 | -8.615850e-47 |
| Msa0318980 | Msa0884670 | 0.815415 | 9.356223e-52 | -8.615850e-47 |
| Msa0326110 | Msa0884670 | 0.809371 | 1.956327e-50 | -8.615850e-47 |
| Msa0337620 | Msa0884670 | 0.812904 | 3.352871e-51 | -8.615850e-47 |
| Msa0345970 | Msa0884670 | 0.808069 | 3.711520e-50 | -8.615850e-47 |
| Msa0498650 | Msa0884670 | 0.800345 | 1.505406e-48 | -8.615850e-47 |
| Msa0512750 | Msa0884670 | 0.802013 | 6.862769e-49 | -8.615850e-47 |
| Msa0516170 | Msa0884670 | 0.812615 | 3.878736e-51 | -8.615850e-47 |
| Msa0529040 | Msa0884670 | 0.801208 | 1.003460e-48 | -8.615850e-47 |
| Msa0529890 | Msa0884670 | 0.861988 | 6.967064e-64 | -8.615850e-47 |
| Msa0531180 | Msa0884670 | 0.806817 | 6.841256e-50 | -8.615850e-47 |
| Msa0545700 | Msa0884670 | 0.807601 | 4.668064e-50 | -8.615850e-47 |
| Msa0547320 | Msa0884670 | 0.805539 | 1.271223e-49 | -8.615850e-47 |
| Msa0572840 | Msa0884670 | 0.802682 | 4.995788e-49 | -8.615850e-47 |
| Msa0585230 | Msa0884670 | 0.800046 | 1.731580e-48 | -8.615850e-47 |
| Msa0585560 | Msa0884670 | 0.862312 | 5.541593e-64 | -8.615850e-47 |
| Msa0601750 | Msa0884670 | 0.807774 | 4.288239e-50 | -8.615850e-47 |
| Msa0843260 | Msa0884670 | 0.805863 | 1.087257e-49 | -8.615850e-47 |
| Msa0844490 | Msa0884670 | 0.802253 | 6.124435e-49 | -8.615850e-47 |
| Msa0861130 | Msa0884670 | 0.808147 | 3.572832e-50 | -8.615850e-47 |
| Msa0880140 | Msa0884670 | 0.818812 | 1.612227e-52 | -8.615850e-47 |
| Msa0884670 | Msa0925290 | 0.800574 | 1.352255e-48 | -8.615850e-47 |
| Msa0884670 | Msa0926890 | 0.802946 | 4.407029e-49 | -8.615850e-47 |
| Msa0884670 | Msa0938220 | 0.808612 | 2.843571e-50 | -8.615850e-47 |
| Msa0884670 | Msa0945970 | 0.804079 | 2.566015e-49 | -8.615850e-47 |
| Msa0884670 | Msa0947660 | 0.806718 | 7.180819e-50 | -8.615850e-47 |
| Msa0884670 | Msa0959360 | 0.838962 | 2.105780e-57 | -8.615850e-47 |
| Msa0884670 | Msa0965610 | 0.803010 | 4.273933e-49 | -8.615850e-47 |
| Msa0884670 | Msa0969520 | 0.823358 | 1.446379e-53 | -8.615850e-47 |
| Msa0884670 | Msa0974070 | 0.800970 | 1.122430e-48 | -8.615850e-47 |
| Msa0884670 | Msa0976670 | 0.820569 | 6.398585e-53 | -8.615850e-47 |
| Msa0884670 | Msa0995270 | 0.811151 | 8.081268e-51 | -8.615850e-47 |
| Msa0884670 | Msa1003620 | 0.811777 | 5.907526e-51 | -8.615850e-47 |
| Msa0884670 | Msa1014540 | 0.830077 | 3.597076e-55 | -8.615850e-47 |
| Msa0884670 | Msa1035480 | 0.818630 | 1.773209e-52 | -8.615850e-47 |
| Msa0884670 | Msa1046460 | 0.807280 | 5.459556e-50 | -8.615850e-47 |
| Msa0884670 | Msa1058710 | 0.817602 | 3.028147e-52 | -8.615850e-47 |
| Msa0884670 | Msa1075650 | 0.811147 | 8.094627e-51 | -8.615850e-47 |
| Msa0884670 | Msa1082500 | 0.813462 | 2.528286e-51 | -8.615850e-47 |
| Msa0884670 | Msa1088640 | 0.812444 | 4.226800e-51 | -8.615850e-47 |
| Msa0884670 | Msa1098400 | 0.814227 | 1.715601e-51 | -8.615850e-47 |
| Msa0884670 | Msa1098420 | 0.820517 | 6.578563e-53 | -8.615850e-47 |
| Msa0884670 | Msa1100050 | 0.814861 | 1.241838e-51 | -8.615850e-47 |
| Msa0884670 | Msa1101090 | 0.808774 | 2.624988e-50 | -8.615850e-47 |
| Msa0884670 | Msa1104090 | 0.816819 | 4.541953e-52 | -8.615850e-47 |
| Msa0884670 | Msa1113170 | 0.817871 | 2.633625e-52 | -8.615850e-47 |
| Msa0884670 | Msa1131220 | 0.803160 | 3.980687e-49 | -8.615850e-47 |
| Msa0884670 | Msa1137570 | 0.814065 | 1.862583e-51 | -8.615850e-47 |
| Msa0884670 | Msa1154280 | 0.810669 | 1.027334e-50 | -8.615850e-47 |
| Msa0884670 | Msa1162780 | 0.826228 | 3.044153e-54 | -8.615850e-47 |
| Msa0884670 | Msa1173100 | 0.803348 | 3.638479e-49 | -8.615850e-47 |
| Msa0884670 | Msa1181250 | 0.800088 | 1.697951e-48 | -8.615850e-47 |
| Msa0884670 | Msa1181910 | 0.803551 | 3.303016e-49 | -8.615850e-47 |
| Msa0884670 | Msa1186950 | -0.805674 | 1.191060e-49 | -8.615850e-47 |
| Msa0884670 | Msa1208880 | 0.809433 | 1.897147e-50 | -8.615850e-47 |
| Msa0884670 | Msa1212940 | 0.803209 | 3.888653e-49 | -8.615850e-47 |
| Msa0884670 | Msa1233890 | 0.800679 | 1.287183e-48 | -8.615850e-47 |
| Msa0884670 | Msa1238930 | 0.808288 | 3.334568e-50 | -8.615850e-47 |
| Msa0884670 | Msa1245930 | 0.805929 | 1.052662e-49 | -8.615850e-47 |
| Msa0884670 | Msa1246510 | 0.811127 | 8.178868e-51 | -8.615850e-47 |
| Msa0884670 | Msa1249490 | 0.800022 | 1.751691e-48 | -8.615850e-47 |
| Msa0884670 | Msa1253020 | 0.811052 | 8.491457e-51 | -8.615850e-47 |
| Msa0884670 | Msa1277660 | 0.800556 | 1.363784e-48 | -8.615850e-47 |
| Msa0884670 | Msa1282580 | -0.837783 | 4.240423e-57 | -8.615850e-47 |
| Msa0884670 | Msa1284680 | 0.811041 | 8.536379e-51 | -8.615850e-47 |
| Msa0884670 | Msa1287460 | 0.807096 | 5.972280e-50 | -8.615850e-47 |
| Msa0884670 | Msa1305340 | 0.817288 | 3.563429e-52 | -8.615850e-47 |
| Msa0884670 | Msa1306850 | 0.802119 | 6.525690e-49 | -8.615850e-47 |
| Msa0884670 | Msa1327680 | 0.826055 | 3.346001e-54 | -8.615850e-47 |
| Msa0884670 | Msa1331000 | 0.811070 | 8.414995e-51 | -8.615850e-47 |
| Msa0884670 | Msa1353470 | 0.805585 | 1.243318e-49 | -8.615850e-47 |
| Msa0884670 | Msa1353980 | 0.807395 | 5.161292e-50 | -8.615850e-47 |
| Msa0884670 | Msa1359040 | 0.813116 | 3.011534e-51 | -8.615850e-47 |
| Msa0884670 | Msa1373030 | 0.813886 | 2.039599e-51 | -8.615850e-47 |
| Msa0884670 | Msa1392240 | 0.808050 | 3.746702e-50 | -8.615850e-47 |
| Msa0884670 | Msa1409880 | 0.808702 | 2.719725e-50 | -8.615850e-47 |
| Msa0884670 | Msa1412640 | 0.808847 | 2.532768e-50 | -8.615850e-47 |
| Msa0884670 | Msa1419960 | 0.809144 | 2.188254e-50 | -8.615850e-47 |
| Msa0884670 | Msa1424750 | 0.812801 | 3.530627e-51 | -8.615850e-47 |
| Msa0884670 | Msa1433390 | 0.805848 | 1.095098e-49 | -8.615850e-47 |
| Msa0884670 | Msa1440560 | 0.811649 | 6.299713e-51 | -8.615850e-47 |
| Msa0884670 | Msa1443850 | 0.823781 | 1.151510e-53 | -8.615850e-47 |
| Msa0884670 | Msa1452240 | 0.806093 | 9.724854e-50 | -8.615850e-47 |
| Msa0884670 | Msa1454620 | 0.818108 | 2.328485e-52 | -8.615850e-47 |
| Msa0884670 | Msa1458750 | 0.802536 | 5.356370e-49 | -8.615850e-47 |
| Msa0884670 | Msa1460050 | 0.802198 | 6.286801e-49 | -8.615850e-47 |
| Msa0884670 | Msa1466540 | 0.833898 | 4.093380e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0884670 | MtrunA17_Chr6g0465041 | 89.873 | 237 | 15 | 2 | 1 | 236 | 1 | 229 | 1.80e-148 | 412 |
| Msa0884670 | MtrunA17_Chr1g0207521 | 60.345 | 174 | 69 | 0 | 56 | 229 | 78 | 251 | 1.17e-79 | 239 |
| Msa0884670 | MtrunA17_Chr2g0279281 | 62.319 | 69 | 19 | 1 | 168 | 236 | 5 | 66 | 6.07e-27 | 98.6 |
| Msa0884670 | MtrunA17_Chr7g0255351 | 26.596 | 188 | 136 | 2 | 48 | 235 | 75 | 260 | 1.18e-21 | 90.5 |
| Msa0884670 | MtrunA17_Chr8g0390511 | 28.500 | 200 | 111 | 4 | 62 | 232 | 10 | 206 | 1.67e-20 | 86.7 |
| Msa0884670 | MtrunA17_Chr2g0288811 | 28.977 | 176 | 121 | 3 | 63 | 236 | 12 | 185 | 2.43e-20 | 85.1 |
| Msa0884670 | MtrunA17_Chr1g0147191 | 31.792 | 173 | 95 | 3 | 62 | 211 | 7 | 179 | 3.25e-20 | 85.5 |
| Msa0884670 | MtrunA17_Chr2g0318131 | 25.000 | 168 | 126 | 0 | 63 | 230 | 180 | 347 | 1.15e-17 | 80.9 |
| Msa0884670 | MtrunA17_Chr2g0324001 | 25.595 | 168 | 125 | 0 | 63 | 230 | 126 | 293 | 2.18e-17 | 79.7 |
| Msa0884670 | MtrunA17_Chr4g0040451 | 29.932 | 147 | 97 | 2 | 84 | 230 | 79 | 219 | 4.24e-16 | 74.3 |
| Msa0884670 | MtrunA17_Chr1g0187331 | 24.405 | 168 | 123 | 3 | 63 | 228 | 12 | 177 | 6.03e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0884670 | AT5G43140.1 | 63.333 | 210 | 77 | 0 | 22 | 231 | 41 | 250 | 2.83e-93 | 274 |
| Msa0884670 | AT2G14860.1 | 60.000 | 175 | 70 | 0 | 56 | 230 | 70 | 244 | 5.38e-80 | 240 |
| Msa0884670 | AT4G33905.1 | 62.147 | 177 | 67 | 0 | 58 | 234 | 81 | 257 | 2.38e-79 | 239 |
| Msa0884670 | AT5G43140.2 | 54.422 | 147 | 67 | 0 | 22 | 168 | 41 | 187 | 4.08e-48 | 157 |
| Msa0884670 | AT5G19750.1 | 30.114 | 176 | 121 | 2 | 55 | 230 | 110 | 283 | 1.65e-24 | 99.0 |
| Msa0884670 | AT1G52870.2 | 27.976 | 168 | 121 | 0 | 63 | 230 | 173 | 340 | 1.56e-19 | 86.7 |
| Msa0884670 | AT4G03410.1 | 25.287 | 174 | 130 | 0 | 63 | 236 | 131 | 304 | 2.45e-19 | 85.5 |
| Msa0884670 | AT4G03410.2 | 25.287 | 174 | 130 | 0 | 63 | 236 | 131 | 304 | 4.46e-19 | 85.1 |
| Msa0884670 | AT4G04470.1 | 27.273 | 176 | 124 | 3 | 63 | 236 | 14 | 187 | 6.56e-18 | 79.0 |
| Msa0884670 | AT4G04470.2 | 27.273 | 176 | 124 | 3 | 63 | 236 | 14 | 187 | 6.56e-18 | 79.0 |
| Msa0884670 | AT3G24570.1 | 28.365 | 208 | 110 | 6 | 62 | 232 | 7 | 212 | 5.48e-17 | 77.8 |
| Msa0884670 | AT4G14305.1 | 25.568 | 176 | 127 | 3 | 63 | 236 | 12 | 185 | 3.11e-15 | 71.6 |
| Msa0884670 | AT2G42770.1 | 29.134 | 127 | 89 | 1 | 99 | 225 | 102 | 227 | 2.86e-14 | 70.1 |
| Msa0884670 | AT1G52870.1 | 28.906 | 128 | 91 | 0 | 63 | 190 | 173 | 300 | 3.02e-12 | 65.5 |
Find 50 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCTGTTAGGTAAAATTT+TGG | 0.137977 | 6_1:+38554884 | None:intergenic |
| TTCAGTCTGGCAACTATTTC+AGG | 0.139583 | 6_1:+38553593 | None:intergenic |
| TGCCATGTAAGTTAAATAAA+TGG | 0.221159 | 6_1:+38553305 | None:intergenic |
| GAACTGTACAAACCTGTAAA+TGG | 0.257405 | 6_1:+38553489 | None:intergenic |
| ACATCCCGAATGGCAATATA+TGG | 0.266048 | 6_1:-38554954 | Msa0884670:CDS |
| GATCTACTCCCTACATTAAT+AGG | 0.278793 | 6_1:-38553566 | Msa0884670:CDS |
| GTTACACACTTAGTAATAAC+AGG | 0.280357 | 6_1:+38557735 | None:intergenic |
| ATTCGTTCCAGTCCATTTAC+AGG | 0.293672 | 6_1:-38553501 | Msa0884670:intron |
| TAATAGGCGGTGCTATGTTT+TGG | 0.329377 | 6_1:-38553550 | Msa0884670:CDS |
| AATATATGGGCTGCTAATCT+TGG | 0.357170 | 6_1:-38554940 | Msa0884670:CDS |
| CAGCCCATATATTGCCATTC+GGG | 0.373631 | 6_1:+38554950 | None:intergenic |
| TCTAAGAAACTTGGGTTTGT+TGG | 0.383573 | 6_1:-38557786 | Msa0884670:CDS |
| TTAATGGGACAAGCTGTATT+CGG | 0.383775 | 6_1:-38554837 | Msa0884670:CDS |
| TCTAACAACTCTAAGAAACT+TGG | 0.433882 | 6_1:-38557795 | Msa0884670:CDS |
| CATGTTGTGTGCAATGTTGT+TGG | 0.443777 | 6_1:+38557907 | None:intergenic |
| TCCTACATTGGTGCTTTACA+AGG | 0.456153 | 6_1:-38554789 | Msa0884670:intron |
| AAGCTTCGGTCAAGTTTGTT+CGG | 0.459349 | 6_1:+38553280 | None:intergenic |
| GCAGCCCATATATTGCCATT+CGG | 0.462247 | 6_1:+38554949 | None:intergenic |
| GTAGTTGCCACATCTCTGTT+AGG | 0.463976 | 6_1:+38554873 | None:intergenic |
| GACCATTTATTTAACTTACA+TGG | 0.464879 | 6_1:-38553307 | Msa0884670:CDS |
| GAGTAGATCTCGCTTCAGTC+TGG | 0.472495 | 6_1:+38553580 | None:intergenic |
| TTAAAATATTTATGCTGTGA+TGG | 0.474611 | 6_1:+38554915 | None:intergenic |
| ATATATGGGCTGCTAATCTT+GGG | 0.481884 | 6_1:-38554939 | Msa0884670:CDS |
| TGCTGCTGATCTTACTTCAC+AGG | 0.492727 | 6_1:-38557694 | Msa0884670:intron |
| TCAAACAAAGTCCTAAGCTT+CGG | 0.497328 | 6_1:+38553266 | None:intergenic |
| AGAAACTTGGGTTTGTTGGT+TGG | 0.498429 | 6_1:-38557782 | Msa0884670:CDS |
| CTGCTTCGTATGATCTGAAA+AGG | 0.501239 | 6_1:-38554977 | Msa0884670:CDS |
| CTAACAACTCTAAGAAACTT+GGG | 0.506283 | 6_1:-38557794 | Msa0884670:CDS |
| ATAGCACCGCCTATTAATGT+AGG | 0.510692 | 6_1:+38553557 | None:intergenic |
| AACAAACTTGACCGAAGCTT+AGG | 0.516037 | 6_1:-38553277 | Msa0884670:exon |
| GTACAAACCTGTAAATGGAC+TGG | 0.516985 | 6_1:+38553494 | None:intergenic |
| ATGCCAAAATCAGGTGAAAG+TGG | 0.522307 | 6_1:-38553617 | Msa0884670:intron |
| ATGGACTGGAACGAATTTGA+AGG | 0.532871 | 6_1:+38553508 | None:intergenic |
| CATAGCATTATTTGGCAGCA+AGG | 0.544310 | 6_1:-38553207 | Msa0884670:three_prime_UTR |
| CATCCCGAATGGCAATATAT+GGG | 0.547441 | 6_1:-38554953 | Msa0884670:CDS |
| AAGAAAACAGTATTGATGAC+AGG | 0.555211 | 6_1:+38554813 | None:intergenic |
| GGAGAGTTGTTGAGAAAGTG+TGG | 0.572582 | 6_1:+38557928 | None:intergenic |
| AAGGTGACAAAATCACATAC+AGG | 0.582571 | 6_1:+38553527 | None:intergenic |
| TAGCACCGCCTATTAATGTA+GGG | 0.596703 | 6_1:+38553558 | None:intergenic |
| TGCCAAAATCAGGTGAAAGT+GGG | 0.599821 | 6_1:-38553616 | Msa0884670:intron |
| CAGATCATACGAAGCAGAAG+AGG | 0.603415 | 6_1:+38554983 | None:intergenic |
| ACCTTGTAAAGCACCAATGT+AGG | 0.606496 | 6_1:+38554788 | None:intergenic |
| GGCAGCAAGGATATGTAACT+AGG | 0.610282 | 6_1:-38553194 | Msa0884670:three_prime_UTR |
| AATGGTCCACACGTATGCGC+AGG | 0.612532 | 6_1:+38553323 | None:intergenic |
| ATAGTTCCTGCGCATACGTG+TGG | 0.621434 | 6_1:-38553329 | Msa0884670:CDS |
| AGATCATACGAAGCAGAAGA+GGG | 0.624100 | 6_1:+38554984 | None:intergenic |
| TCTGAAAAGGACATCCCGAA+TGG | 0.643854 | 6_1:-38554964 | Msa0884670:CDS |
| GCGCAGGAACTATTCATCAG+TGG | 0.674295 | 6_1:+38553339 | None:intergenic |
| CTACTCCCTACATTAATAGG+CGG | 0.707462 | 6_1:-38553563 | Msa0884670:CDS |
| TTACACACTTAGTAATAACA+GGG | 0.721870 | 6_1:+38557736 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTAATTTTTTAAATTATTAC+TGG | - | chr6_1:38553931-38553950 | Msa0884670:intron | 10.0% |
| !! | AGGTATAAATAAAAAAATAA+TGG | + | chr6_1:38556647-38556666 | None:intergenic | 10.0% |
| !! | ATCTTAAAAAATGACATAAT+TGG | + | chr6_1:38553626-38553645 | None:intergenic | 15.0% |
| !! | TTATGAAATTATTTATTACC+AGG | - | chr6_1:38554364-38554383 | Msa0884670:intron | 15.0% |
| !! | TATGAAATTATTTATTACCA+GGG | - | chr6_1:38554365-38554384 | Msa0884670:intron | 15.0% |
| !!! | ATATTTTCTAGATATTTTAG+CGG | + | chr6_1:38555166-38555185 | None:intergenic | 15.0% |
| !! | ATGATAACAAACTAAAATTA+GGG | + | chr6_1:38555772-38555791 | None:intergenic | 15.0% |
| !! | TATGATAACAAACTAAAATT+AGG | + | chr6_1:38555773-38555792 | None:intergenic | 15.0% |
| !!! | TACTTTGAAGAAAATTTTAA+TGG | - | chr6_1:38556287-38556306 | Msa0884670:intron | 15.0% |
| !!! | ACTTTGAAGAAAATTTTAAT+GGG | - | chr6_1:38556288-38556307 | Msa0884670:intron | 15.0% |
| !!! | GGAAAATAATTTTTTCATTT+TGG | - | chr6_1:38556940-38556959 | Msa0884670:intron | 15.0% |
| !! | AAACAAATTTAATTCTCATT+GGG | - | chr6_1:38557103-38557122 | Msa0884670:intron | 15.0% |
| !!! | TATTTAAACCTTAACTTTTA+TGG | - | chr6_1:38557391-38557410 | Msa0884670:intron | 15.0% |
| !! | TTTCATTATACTCACATATA+TGG | - | chr6_1:38553484-38553503 | Msa0884670:intron | 20.0% |
| !! | ACATAATTGGATGTAATTAT+AGG | + | chr6_1:38553613-38553632 | None:intergenic | 20.0% |
| !!! | TAGATCTATTTCTAAAATAC+AGG | - | chr6_1:38553829-38553848 | Msa0884670:intron | 20.0% |
| !!! | AGATCTATTTCTAAAATACA+GGG | - | chr6_1:38553830-38553849 | Msa0884670:intron | 20.0% |
| !! | TCTTGATCTGTTTAAATATA+TGG | - | chr6_1:38554607-38554626 | Msa0884670:intron | 20.0% |
| !! | ATTCTATTCTAGTATCAATA+GGG | - | chr6_1:38554643-38554662 | Msa0884670:intron | 20.0% |
| !! | TTTAACATTTACAAAGTGAT+TGG | - | chr6_1:38554968-38554987 | Msa0884670:CDS | 20.0% |
| !! | TTAACATTTACAAAGTGATT+GGG | - | chr6_1:38554969-38554988 | Msa0884670:CDS | 20.0% |
| !! | TTAGCTAATTAATTGATTAG+AGG | - | chr6_1:38555410-38555429 | Msa0884670:intron | 20.0% |
| !! | TAGCTAATTAATTGATTAGA+GGG | - | chr6_1:38555411-38555430 | Msa0884670:intron | 20.0% |
| !!! | ATTAACTTAATCTTCTGAAA+AGG | - | chr6_1:38555797-38555816 | Msa0884670:intron | 20.0% |
| !! | ATCAAATTCGTTAAATGATA+TGG | + | chr6_1:38555977-38555996 | None:intergenic | 20.0% |
| !!! | AACCTTTTTTATTACTACTT+AGG | - | chr6_1:38556083-38556102 | Msa0884670:intron | 20.0% |
| !! | TCTAACATAGATAAATCAAT+AGG | + | chr6_1:38556125-38556144 | None:intergenic | 20.0% |
| !! | TTAAAATATTTATGCTGTGA+TGG | + | chr6_1:38556228-38556247 | None:intergenic | 20.0% |
| !!! | TTCATATTTTTTTTAAACGG+TGG | - | chr6_1:38556379-38556398 | Msa0884670:intron | 20.0% |
| !!! | CTTAAACCAATGATTTTTTA+AGG | + | chr6_1:38556567-38556586 | None:intergenic | 20.0% |
| !!! | AAATCATTGGTTTAAGATTT+TGG | - | chr6_1:38556571-38556590 | Msa0884670:intron | 20.0% |
| !! | GAAACAAATTTAATTCTCAT+TGG | - | chr6_1:38557102-38557121 | Msa0884670:intron | 20.0% |
| !! | ACTAACAAATAGAACTTATA+GGG | - | chr6_1:38557132-38557151 | Msa0884670:intron | 20.0% |
| !!! | AAATTCTTCTTTCTTTTGAA+TGG | - | chr6_1:38557159-38557178 | Msa0884670:intron | 20.0% |
| !!! | CATTTAAAACTGATAAGTTT+TGG | + | chr6_1:38557299-38557318 | None:intergenic | 20.0% |
| !!! | TTTATTATGTTTCTAGCATT+TGG | + | chr6_1:38557330-38557349 | None:intergenic | 20.0% |
| !!! | TTTTATAGCATAGCATTATT+TGG | - | chr6_1:38557925-38557944 | Msa0884670:CDS | 20.0% |
| !! | GTAACTAGGTATAAAAATTA+TGG | - | chr6_1:38557960-38557979 | Msa0884670:exon | 20.0% |
| !! | AGGTATAAAAATTATGGTAA+CGG | - | chr6_1:38557966-38557985 | Msa0884670:exon | 20.0% |
| !!! | AATGTGTAGTTTTGTTCTTT+GGG | + | chr6_1:38553272-38553291 | None:intergenic | 25.0% |
| !!! | AAATGTGTAGTTTTGTTCTT+TGG | + | chr6_1:38553273-38553292 | None:intergenic | 25.0% |
| ! | TTACACACTTAGTAATAACA+GGG | + | chr6_1:38553407-38553426 | None:intergenic | 25.0% |
| ! | TTAGATGTAATTATATGCGT+CGG | + | chr6_1:38553730-38553749 | None:intergenic | 25.0% |
| ! | ATTACATAATTGAATGCAAG+AGG | + | chr6_1:38553916-38553935 | None:intergenic | 25.0% |
| ! | TAATAACATGTATCAAGTGT+CGG | + | chr6_1:38554023-38554042 | None:intergenic | 25.0% |
| ! | TATAATGACTAACATGACAT+CGG | + | chr6_1:38554077-38554096 | None:intergenic | 25.0% |
| !!! | ACATTTTCAATTAGAAGTGT+CGG | + | chr6_1:38554115-38554134 | None:intergenic | 25.0% |
| ! | ATATGAGTTTCATTCAACAA+GGG | - | chr6_1:38554169-38554188 | Msa0884670:intron | 25.0% |
| ! | ATCACATAATTGAATGTAAG+AGG | + | chr6_1:38554223-38554242 | None:intergenic | 25.0% |
| !!! | TTGTTCTATCTTTTGAAGTA+CGG | - | chr6_1:38554272-38554291 | Msa0884670:intron | 25.0% |
| !! | ATACTCAAAAACATTTTACG+CGG | + | chr6_1:38554544-38554563 | None:intergenic | 25.0% |
| ! | ATCTGTTTAAATATATGGTG+AGG | - | chr6_1:38554612-38554631 | Msa0884670:intron | 25.0% |
| ! | GATTCTATTCTAGTATCAAT+AGG | - | chr6_1:38554642-38554661 | Msa0884670:intron | 25.0% |
| !! | TTGAAGAATAAGTTGAATCA+TGG | + | chr6_1:38555003-38555022 | None:intergenic | 25.0% |
| ! | ATTCAACTTATTCTTCAATC+TGG | - | chr6_1:38555005-38555024 | Msa0884670:intron | 25.0% |
| ! | TCTTTCCTAGAGATAAATTA+TGG | - | chr6_1:38555108-38555127 | Msa0884670:intron | 25.0% |
| !! | AGAACAGAGTTTTTAAATTG+AGG | + | chr6_1:38555528-38555547 | None:intergenic | 25.0% |
| ! | AATAACTTAAAAGAGTTCAG+AGG | - | chr6_1:38555726-38555745 | Msa0884670:intron | 25.0% |
| ! | CAAATGTGAAATTCAAGATA+AGG | + | chr6_1:38555909-38555928 | None:intergenic | 25.0% |
| ! | GACCTAAGTAGTAATAAAAA+AGG | + | chr6_1:38556088-38556107 | None:intergenic | 25.0% |
| !! | ATCTCTGTTAGGTAAAATTT+TGG | + | chr6_1:38556259-38556278 | None:intergenic | 25.0% |
| !!! | ACCAATGATTTTTTAAGGAA+CGG | + | chr6_1:38556562-38556581 | None:intergenic | 25.0% |
| !!! | TGATTTTGTTGGTAAGATAT+AGG | - | chr6_1:38556824-38556843 | Msa0884670:intron | 25.0% |
| ! | GACTAACAAATAGAACTTAT+AGG | - | chr6_1:38557131-38557150 | Msa0884670:intron | 25.0% |
| ! | ATGCTAGAAACATAATAAAG+AGG | - | chr6_1:38557331-38557350 | Msa0884670:intron | 25.0% |
| ! | CAATCATTCCATAAAAGTTA+AGG | + | chr6_1:38557402-38557421 | None:intergenic | 25.0% |
| !!! | TTTTTACTCATTTTTTGCGA+AGG | - | chr6_1:38557434-38557453 | Msa0884670:intron | 25.0% |
| ! | AAGGAATTAAGGTCATTAAT+TGG | - | chr6_1:38557453-38557472 | Msa0884670:intron | 25.0% |
| ! | TTCTGTTTGTTTATGGTTAT+TGG | - | chr6_1:38557479-38557498 | Msa0884670:intron | 25.0% |
| ! | AGAAAATTAAGTTCAGACAA+TGG | + | chr6_1:38557685-38557704 | None:intergenic | 25.0% |
| !! | GACCATTTATTTAACTTACA+TGG | - | chr6_1:38557833-38557852 | Msa0884670:CDS | 25.0% |
| ! | TGCCATGTAAGTTAAATAAA+TGG | + | chr6_1:38557838-38557857 | None:intergenic | 25.0% |
| ! | TCTAACAACTCTAAGAAACT+TGG | - | chr6_1:38553345-38553364 | Msa0884670:intron | 30.0% |
| ! | CTAACAACTCTAAGAAACTT+GGG | - | chr6_1:38553346-38553365 | Msa0884670:intron | 30.0% |
| GTTACACACTTAGTAATAAC+AGG | + | chr6_1:38553408-38553427 | None:intergenic | 30.0% | |
| ! | TCACGCTTTTATTGATGTTT+TGG | - | chr6_1:38553775-38553794 | Msa0884670:intron | 30.0% |
| ! | CACGCTTTTATTGATGTTTT+GGG | - | chr6_1:38553776-38553795 | Msa0884670:intron | 30.0% |
| ATACGAGTTTCATACTACAA+GGG | - | chr6_1:38553856-38553875 | Msa0884670:intron | 30.0% | |
| CATATGAGTTTCATTCAACA+AGG | - | chr6_1:38554168-38554187 | Msa0884670:intron | 30.0% | |
| ATCTAGAAACTAATGCTAAG+AGG | + | chr6_1:38554576-38554595 | None:intergenic | 30.0% | |
| TATTCTAGTATCAATAGGGT+TGG | - | chr6_1:38554647-38554666 | Msa0884670:intron | 30.0% | |
| GTGCTTTGTATTTACTATCA+TGG | - | chr6_1:38554669-38554688 | Msa0884670:intron | 30.0% | |
| GAAAAAGAACACATAGCATA+AGG | + | chr6_1:38554932-38554951 | None:intergenic | 30.0% | |
| ATTTACAAAGTGATTGGGAT+TGG | - | chr6_1:38554974-38554993 | Msa0884670:CDS | 30.0% | |
| TTTACAAAGTGATTGGGATT+GGG | - | chr6_1:38554975-38554994 | Msa0884670:CDS | 30.0% | |
| TTGCAATGTATCATACCAAA+TGG | - | chr6_1:38555047-38555066 | Msa0884670:intron | 30.0% | |
| ATTAATTGATTAGAGGGATG+AGG | - | chr6_1:38555417-38555436 | Msa0884670:intron | 30.0% | |
| GTGAACTTTACAGTAACTTT+GGG | + | chr6_1:38555608-38555627 | None:intergenic | 30.0% | |
| AGTGAACTTTACAGTAACTT+TGG | + | chr6_1:38555609-38555628 | None:intergenic | 30.0% | |
| AACTTCTCAATAAGCACTTA+TGG | + | chr6_1:38555646-38555665 | None:intergenic | 30.0% | |
| !! | AGTCTTGGTGTCAAATATTT+AGG | + | chr6_1:38555848-38555867 | None:intergenic | 30.0% |
| ! | AATTTTACCTAACAGAGATG+TGG | - | chr6_1:38556260-38556279 | Msa0884670:intron | 30.0% |
| !! | AAGAAAACAGTATTGATGAC+AGG | + | chr6_1:38556330-38556349 | None:intergenic | 30.0% |
| ATCCAAACTAACGCTTATAT+TGG | + | chr6_1:38556486-38556505 | None:intergenic | 30.0% | |
| ! | TATAAGCGTTAGTTTGGATA+TGG | - | chr6_1:38556487-38556506 | Msa0884670:intron | 30.0% |
| ! | GATATGGATTCTAAAAAGTG+AGG | - | chr6_1:38556503-38556522 | Msa0884670:intron | 30.0% |
| ACCGTTCCTTAAAAAATCAT+TGG | - | chr6_1:38556558-38556577 | Msa0884670:intron | 30.0% | |
| GTTGAGATTTCAAGAAATTC+TGG | + | chr6_1:38556625-38556644 | None:intergenic | 30.0% | |
| ATATGCAGAATCATCACTAT+AGG | + | chr6_1:38556667-38556686 | None:intergenic | 30.0% | |
| AAAATCAGCATGACTGAAAA+TGG | + | chr6_1:38556811-38556830 | None:intergenic | 30.0% | |
| AGGATTGGAAGTGATATTAA+TGG | - | chr6_1:38556852-38556871 | Msa0884670:intron | 30.0% | |
| AGTGATATTAATGGAGTAGT+TGG | - | chr6_1:38556861-38556880 | Msa0884670:intron | 30.0% | |
| GTGATATTAATGGAGTAGTT+GGG | - | chr6_1:38556862-38556881 | Msa0884670:intron | 30.0% | |
| ! | TTCATTTTGGATCAAAACAG+TGG | - | chr6_1:38556953-38556972 | Msa0884670:intron | 30.0% |
| TGGCAAAACAAATTTAACAC+CGG | - | chr6_1:38557270-38557289 | Msa0884670:intron | 30.0% | |
| !!! | CTTATCAGTTTTAAATGCCA+AGG | - | chr6_1:38557302-38557321 | Msa0884670:intron | 30.0% |
| !!! | CATTTTTTGCGAAGGAATTA+AGG | - | chr6_1:38557442-38557461 | Msa0884670:intron | 30.0% |
| ! | TTGGTGATTCTGTTTGTTTA+TGG | - | chr6_1:38557472-38557491 | Msa0884670:intron | 30.0% |
| CAGACACAAACGAAAAAACA+TGG | - | chr6_1:38553176-38553195 | Msa0884670:three_prime_UTR | 35.0% | |
| TCTAAGAAACTTGGGTTTGT+TGG | - | chr6_1:38553354-38553373 | Msa0884670:intron | 35.0% | |
| ! | CTTTTGATCGAAGTTGTGTT+TGG | - | chr6_1:38553550-38553569 | Msa0884670:CDS | 35.0% |
| ACACCTTCAATCAGAAATGT+CGG | + | chr6_1:38553692-38553711 | None:intergenic | 35.0% | |
| CATACGAGTTTCATACTACA+AGG | - | chr6_1:38553855-38553874 | Msa0884670:intron | 35.0% | |
| GCAGATGAAATTCATTCTCA+TGG | + | chr6_1:38554461-38554480 | None:intergenic | 35.0% | |
| AAATATATGGTGAGGACTTG+AGG | - | chr6_1:38554620-38554639 | Msa0884670:intron | 35.0% | |
| !! | TTGGGAAGTGTTTCATATTC+TGG | - | chr6_1:38554849-38554868 | Msa0884670:CDS | 35.0% |
| TTACAAAGTGATTGGGATTG+GGG | - | chr6_1:38554976-38554995 | Msa0884670:CDS | 35.0% | |
| CAATGTATCATACCAAATGG+TGG | - | chr6_1:38555050-38555069 | Msa0884670:intron | 35.0% | |
| AGTCGCCATAATTTATCTCT+AGG | + | chr6_1:38555116-38555135 | None:intergenic | 35.0% | |
| TTGTGTGACTAAGAAGTCAT+AGG | - | chr6_1:38555288-38555307 | Msa0884670:intron | 35.0% | |
| ACTAAGAAGTCATAGGTTTG+AGG | - | chr6_1:38555295-38555314 | Msa0884670:intron | 35.0% | |
| TTTGGTTGGGATGTGATAAT+AGG | - | chr6_1:38555440-38555459 | Msa0884670:intron | 35.0% | |
| TTGGTTGGGATGTGATAATA+GGG | - | chr6_1:38555441-38555460 | Msa0884670:intron | 35.0% | |
| ATTTGACACCAAGACTTGTA+TGG | - | chr6_1:38555852-38555871 | Msa0884670:intron | 35.0% | |
| TGAATTTCACATTTGTGAGC+TGG | - | chr6_1:38555914-38555933 | Msa0884670:intron | 35.0% | |
| ! | ACCTGTTTTCACTATATGTC+AGG | - | chr6_1:38556012-38556031 | Msa0884670:intron | 35.0% |
| ! | CCTGTTTTCACTATATGTCA+GGG | - | chr6_1:38556013-38556032 | Msa0884670:intron | 35.0% |
| TCAATAGGTTAGTGAAGACA+CGG | + | chr6_1:38556110-38556129 | None:intergenic | 35.0% | |
| ! | AATATATGGGCTGCTAATCT+TGG | - | chr6_1:38556200-38556219 | Msa0884670:intron | 35.0% |
| ! | ATATATGGGCTGCTAATCTT+GGG | - | chr6_1:38556201-38556220 | Msa0884670:intron | 35.0% |
| TTAATGGGACAAGCTGTATT+CGG | - | chr6_1:38556303-38556322 | Msa0884670:intron | 35.0% | |
| ! | ACTGTTTTCTTCTCCTACAT+TGG | - | chr6_1:38556339-38556358 | Msa0884670:intron | 35.0% |
| CTCCAATATAAGCGTTAGTT+TGG | - | chr6_1:38556481-38556500 | Msa0884670:intron | 35.0% | |
| CCTTGCAGCATATAATCTTA+AGG | + | chr6_1:38556535-38556554 | None:intergenic | 35.0% | |
| CCTTAAGATTATATGCTGCA+AGG | - | chr6_1:38556532-38556551 | Msa0884670:intron | 35.0% | |
| GAGACTAAAGAAACCTGATT+TGG | + | chr6_1:38556717-38556736 | None:intergenic | 35.0% | |
| AATCAGGTTTCTTTAGTCTC+AGG | - | chr6_1:38556717-38556736 | Msa0884670:intron | 35.0% | |
| ATCAGGTTTCTTTAGTCTCA+GGG | - | chr6_1:38556718-38556737 | Msa0884670:intron | 35.0% | |
| GATTATGCCTGTGGTTAAAT+TGG | + | chr6_1:38556754-38556773 | None:intergenic | 35.0% | |
| !!! | TTCAGTCATGCTGATTTTGT+TGG | - | chr6_1:38556813-38556832 | Msa0884670:intron | 35.0% |
| TTGGTAAGATATAGGCGAAA+AGG | - | chr6_1:38556832-38556851 | Msa0884670:intron | 35.0% | |
| AAGATATAGGCGAAAAGGAT+TGG | - | chr6_1:38556837-38556856 | Msa0884670:intron | 35.0% | |
| TTAGTTGAAGAGAAAAGCAG+TGG | - | chr6_1:38556893-38556912 | Msa0884670:intron | 35.0% | |
| ATTGGTAGGTTAGGAAAAAC+TGG | - | chr6_1:38556919-38556938 | Msa0884670:intron | 35.0% | |
| GTGGAGAAAGAACAAGAAAA+TGG | - | chr6_1:38556972-38556991 | Msa0884670:intron | 35.0% | |
| CAAGAAGTAGCATGTTATAG+TGG | - | chr6_1:38557007-38557026 | Msa0884670:intron | 35.0% | |
| !! | TGTTATAGTGGATGAACTCA+TGG | - | chr6_1:38557019-38557038 | Msa0884670:intron | 35.0% |
| TCAACAAAATAGTCTCGTCT+CGG | + | chr6_1:38557078-38557097 | None:intergenic | 35.0% | |
| CAAAACAAATTTAACACCGG+TGG | - | chr6_1:38557273-38557292 | Msa0884670:intron | 35.0% | |
| GATCTACTCCCTACATTAAT+AGG | - | chr6_1:38557574-38557593 | Msa0884670:intron | 35.0% | |
| AAGGTGACAAAATCACATAC+AGG | + | chr6_1:38557616-38557635 | None:intergenic | 35.0% | |
| GAACTGTACAAACCTGTAAA+TGG | + | chr6_1:38557654-38557673 | None:intergenic | 35.0% | |
| TCAAACAAAGTCCTAAGCTT+CGG | + | chr6_1:38557877-38557896 | None:intergenic | 35.0% | |
| CATGTTGTGTGCAATGTTGT+TGG | + | chr6_1:38553236-38553255 | None:intergenic | 40.0% | |
| !! | AGAAACTTGGGTTTGTTGGT+TGG | - | chr6_1:38553358-38553377 | Msa0884670:intron | 40.0% |
| AGCAGCAGTAAAAATAAGCG+AGG | + | chr6_1:38553433-38553452 | None:intergenic | 40.0% | |
| !! | TGTTTTGGGTGAAACTTACG+TGG | - | chr6_1:38553790-38553809 | Msa0884670:intron | 40.0% |
| GTACGGTCACTTATGATTGA+AGG | - | chr6_1:38554289-38554308 | Msa0884670:intron | 40.0% | |
| !! | GCAGTCATATTGCTATTTGC+TGG | - | chr6_1:38554479-38554498 | Msa0884670:intron | 40.0% |
| TTAGATTTGCGTTGCTTGCT+AGG | - | chr6_1:38554698-38554717 | Msa0884670:intron | 40.0% | |
| ! | TTATCCTCCAGTTGCACTTT+TGG | - | chr6_1:38554880-38554899 | Msa0884670:CDS | 40.0% |
| GGTCTCTCGTACATTATCAT+GGG | + | chr6_1:38555145-38555164 | None:intergenic | 40.0% | |
| TTGATTAGAGGGATGAGGTT+TGG | - | chr6_1:38555422-38555441 | Msa0884670:intron | 40.0% | |
| GGAGAGAGAAGAATGAGAAA+GGG | - | chr6_1:38555462-38555481 | Msa0884670:intron | 40.0% | |
| GAGAGAGAAGAATGAGAAAG+GGG | - | chr6_1:38555463-38555482 | Msa0884670:intron | 40.0% | |
| AGAAGAATGAGAAAGGGGTT+AGG | - | chr6_1:38555468-38555487 | Msa0884670:intron | 40.0% | |
| GTGTCAAATATTTAGGCTCG+CGG | + | chr6_1:38555841-38555860 | None:intergenic | 40.0% | |
| CAGTAGAACCATACAAGTCT+TGG | + | chr6_1:38555863-38555882 | None:intergenic | 40.0% | |
| ! | CAAGACTTGTATGGTTCTAC+TGG | - | chr6_1:38555861-38555880 | Msa0884670:intron | 40.0% |
| ! | ACTTGTATGGTTCTACTGGT+TGG | - | chr6_1:38555865-38555884 | Msa0884670:intron | 40.0% |
| CCCTGACATATAGTGAAAAC+AGG | + | chr6_1:38556016-38556035 | None:intergenic | 40.0% | |
| ATATGTCAGGGATTCTGAGT+TGG | - | chr6_1:38556025-38556044 | Msa0884670:intron | 40.0% | |
| TATGTCAGGGATTCTGAGTT+GGG | - | chr6_1:38556026-38556045 | Msa0884670:intron | 40.0% | |
| AGATCATACGAAGCAGAAGA+GGG | + | chr6_1:38556159-38556178 | None:intergenic | 40.0% | |
| CTGCTTCGTATGATCTGAAA+AGG | - | chr6_1:38556163-38556182 | Msa0884670:intron | 40.0% | |
| ACATCCCGAATGGCAATATA+TGG | - | chr6_1:38556186-38556205 | Msa0884670:intron | 40.0% | |
| CATCCCGAATGGCAATATAT+GGG | - | chr6_1:38556187-38556206 | Msa0884670:intron | 40.0% | |
| ! | TCCTACATTGGTGCTTTACA+AGG | - | chr6_1:38556351-38556370 | Msa0884670:intron | 40.0% |
| ! | ACCTTGTAAAGCACCAATGT+AGG | + | chr6_1:38556355-38556374 | None:intergenic | 40.0% |
| !! | CTGATTTGGCACATGTAACA+AGG | + | chr6_1:38556703-38556722 | None:intergenic | 40.0% |
| CTTGTTACATGTGCCAAATC+AGG | - | chr6_1:38556701-38556720 | Msa0884670:intron | 40.0% | |
| GCATCTATTCGCTAGTCAAA+GGG | + | chr6_1:38556783-38556802 | None:intergenic | 40.0% | |
| AGCATCTATTCGCTAGTCAA+AGG | + | chr6_1:38556784-38556803 | None:intergenic | 40.0% | |
| TCAGCATGACTGAAAATGGA+GGG | + | chr6_1:38556807-38556826 | None:intergenic | 40.0% | |
| ATCAGCATGACTGAAAATGG+AGG | + | chr6_1:38556808-38556827 | None:intergenic | 40.0% | |
| TGGTTGTGAGCTGAAAAGTA+TGG | - | chr6_1:38557039-38557058 | Msa0884670:intron | 40.0% | |
| ! | TGTGAGCTGAAAAGTATGGA+AGG | - | chr6_1:38557043-38557062 | Msa0884670:intron | 40.0% |
| !! | AACTGATAAGTTTTGGCCAC+CGG | + | chr6_1:38557292-38557311 | None:intergenic | 40.0% |
| !! | GTTTCTAGCATTTGGTTCCT+TGG | + | chr6_1:38557322-38557341 | None:intergenic | 40.0% |
| !! | CCTGATTTTGGCATCGAAAA+GGG | + | chr6_1:38557517-38557536 | None:intergenic | 40.0% |
| !! | ACCTGATTTTGGCATCGAAA+AGG | + | chr6_1:38557518-38557537 | None:intergenic | 40.0% |
| ATGCCAAAATCAGGTGAAAG+TGG | - | chr6_1:38557523-38557542 | Msa0884670:intron | 40.0% | |
| TGCCAAAATCAGGTGAAAGT+GGG | - | chr6_1:38557524-38557543 | Msa0884670:intron | 40.0% | |
| TTCAGTCTGGCAACTATTTC+AGG | + | chr6_1:38557550-38557569 | None:intergenic | 40.0% | |
| CTACTCCCTACATTAATAGG+CGG | - | chr6_1:38557577-38557596 | Msa0884670:intron | 40.0% | |
| TAGCACCGCCTATTAATGTA+GGG | + | chr6_1:38557585-38557604 | None:intergenic | 40.0% | |
| ATAGCACCGCCTATTAATGT+AGG | + | chr6_1:38557586-38557605 | None:intergenic | 40.0% | |
| !!! | TAATAGGCGGTGCTATGTTT+TGG | - | chr6_1:38557590-38557609 | Msa0884670:intron | 40.0% |
| !! | ATGGACTGGAACGAATTTGA+AGG | + | chr6_1:38557635-38557654 | None:intergenic | 40.0% |
| ATTCGTTCCAGTCCATTTAC+AGG | - | chr6_1:38557639-38557658 | Msa0884670:intron | 40.0% | |
| GTACAAACCTGTAAATGGAC+TGG | + | chr6_1:38557649-38557668 | None:intergenic | 40.0% | |
| ATCATGATCTTCATCTCAGC+AGG | - | chr6_1:38557723-38557742 | Msa0884670:CDS | 40.0% | |
| ! | AAGCTTCGGTCAAGTTTGTT+CGG | + | chr6_1:38557863-38557882 | None:intergenic | 40.0% |
| AACAAACTTGACCGAAGCTT+AGG | - | chr6_1:38557863-38557882 | Msa0884670:CDS | 40.0% | |
| CATAGCATTATTTGGCAGCA+AGG | - | chr6_1:38557933-38557952 | Msa0884670:CDS | 40.0% | |
| GGAGAGTTGTTGAGAAAGTG+TGG | + | chr6_1:38553215-38553234 | None:intergenic | 45.0% | |
| TGCTGCTGATCTTACTTCAC+AGG | - | chr6_1:38553446-38553465 | Msa0884670:intron | 45.0% | |
| ! | GCACCGACATTTCTGATTGA+AGG | - | chr6_1:38553686-38553705 | Msa0884670:intron | 45.0% |
| ! | GCATTGTCACTTCCGATTGA+AGG | - | chr6_1:38553985-38554004 | Msa0884670:intron | 45.0% |
| ACACCAGATACGCCTTCAAT+CGG | + | chr6_1:38554000-38554019 | None:intergenic | 45.0% | |
| ! | CTTATGATTGAAGGCGTGTG+TGG | - | chr6_1:38554298-38554317 | Msa0884670:intron | 45.0% |
| ACACAACACTAACTTGACCC+TGG | + | chr6_1:38554385-38554404 | None:intergenic | 45.0% | |
| AGAAATAGCCTCTCCGCTTA+CGG | - | chr6_1:38554738-38554757 | Msa0884670:intron | 45.0% | |
| !! | TTACATTGGGTTGGGTAGGA+AGG | + | chr6_1:38554793-38554812 | None:intergenic | 45.0% |
| TCCTACCCAACCCAATGTAA+TGG | - | chr6_1:38554793-38554812 | Msa0884670:CDS | 45.0% | |
| CCTACCCAACCCAATGTAAT+GGG | - | chr6_1:38554794-38554813 | Msa0884670:CDS | 45.0% | |
| TGTGAGGCTCCCATTACATT+GGG | + | chr6_1:38554806-38554825 | None:intergenic | 45.0% | |
| TAATGGGAGCCTCACACAAT+TGG | - | chr6_1:38554810-38554829 | Msa0884670:CDS | 45.0% | |
| TAAGGGCAACCAATTGTGTG+AGG | + | chr6_1:38554822-38554841 | None:intergenic | 45.0% | |
| CACACAATTGGTTGCCCTTA+TGG | - | chr6_1:38554822-38554841 | Msa0884670:CDS | 45.0% | |
| CACTTCCCAACACACCATAA+GGG | + | chr6_1:38554839-38554858 | None:intergenic | 45.0% | |
| ACACTTCCCAACACACCATA+AGG | + | chr6_1:38554840-38554859 | None:intergenic | 45.0% | |
| ! | AACTCCAAAAGTGCAACTGG+AGG | + | chr6_1:38554887-38554906 | None:intergenic | 45.0% |
| ! | CTCAACTCCAAAAGTGCAAC+TGG | + | chr6_1:38554890-38554909 | None:intergenic | 45.0% |
| CACATAGCATAAGGCAGAAC+AGG | + | chr6_1:38554923-38554942 | None:intergenic | 45.0% | |
| TGAGAGAAGAGACCACCATT+TGG | + | chr6_1:38555065-38555084 | None:intergenic | 45.0% | |
| CGGTCTCTCGTACATTATCA+TGG | + | chr6_1:38555146-38555165 | None:intergenic | 45.0% | |
| ! | AGTCATAGGTTTGAGGTGTG+AGG | - | chr6_1:38555302-38555321 | Msa0884670:intron | 45.0% |
| ! | TTAGAGGGATGAGGTTTGGT+TGG | - | chr6_1:38555426-38555445 | Msa0884670:intron | 45.0% |
| ! | TAGAGGGATGAGGTTTGGTT+GGG | - | chr6_1:38555427-38555446 | Msa0884670:intron | 45.0% |
| GGGAGAGAGAAGAATGAGAA+AGG | - | chr6_1:38555461-38555480 | Msa0884670:intron | 45.0% | |
| CAGATCATACGAAGCAGAAG+AGG | + | chr6_1:38556160-38556179 | None:intergenic | 45.0% | |
| TCTGAAAAGGACATCCCGAA+TGG | - | chr6_1:38556176-38556195 | Msa0884670:intron | 45.0% | |
| CAGCCCATATATTGCCATTC+GGG | + | chr6_1:38556193-38556212 | None:intergenic | 45.0% | |
| GCAGCCCATATATTGCCATT+CGG | + | chr6_1:38556194-38556213 | None:intergenic | 45.0% | |
| GTAGTTGCCACATCTCTGTT+AGG | + | chr6_1:38556270-38556289 | None:intergenic | 45.0% | |
| TTTCTTTAGTCTCAGGGTGC+AGG | - | chr6_1:38556724-38556743 | Msa0884670:intron | 45.0% | |
| TTCTTTAGTCTCAGGGTGCA+GGG | - | chr6_1:38556725-38556744 | Msa0884670:intron | 45.0% | |
| AGGGCTACCAATTTAACCAC+AGG | - | chr6_1:38556744-38556763 | Msa0884670:intron | 45.0% | |
| GGGTATACAGATTATGCCTG+TGG | + | chr6_1:38556763-38556782 | None:intergenic | 45.0% | |
| AGAGAAAAGCAGTGGCAGAT+TGG | - | chr6_1:38556901-38556920 | Msa0884670:intron | 45.0% | |
| AAAAGCAGTGGCAGATTGGT+AGG | - | chr6_1:38556905-38556924 | Msa0884670:intron | 45.0% | |
| !! | CATTGATGATGTGCATCACG+TGG | - | chr6_1:38557250-38557269 | Msa0884670:intron | 45.0% |
| ! | CCCTTTTCGATGCCAAAATC+AGG | - | chr6_1:38557514-38557533 | Msa0884670:intron | 45.0% |
| GGCAGCAAGGATATGTAACT+AGG | - | chr6_1:38557946-38557965 | Msa0884670:CDS | 45.0% | |
| !!! | ATTTTCATATTTTTTTTAAA+CGG | - | chr6_1:38556376-38556395 | Msa0884670:intron | 5.0% |
| ! | CTTCCGATTGAAGGCGTATC+TGG | - | chr6_1:38553994-38554013 | Msa0884670:intron | 50.0% |
| ! | TGCGTTGCTTGCTAGGTCAT+CGG | - | chr6_1:38554705-38554724 | Msa0884670:intron | 50.0% |
| GAAATAGCCTCTCCGCTTAC+GGG | - | chr6_1:38554739-38554758 | Msa0884670:intron | 50.0% | |
| GGTAGCTGTACTCATGTACG+CGG | + | chr6_1:38554772-38554791 | None:intergenic | 50.0% | |
| !! | CCCATTACATTGGGTTGGGT+AGG | + | chr6_1:38554797-38554816 | None:intergenic | 50.0% |
| GGCTCCCATTACATTGGGTT+GGG | + | chr6_1:38554801-38554820 | None:intergenic | 50.0% | |
| AGGCTCCCATTACATTGGGT+TGG | + | chr6_1:38554802-38554821 | None:intergenic | 50.0% | |
| GTGTGAGGCTCCCATTACAT+TGG | + | chr6_1:38554807-38554826 | None:intergenic | 50.0% | |
| TGGTTGCCCTTATGGTGTGT+TGG | - | chr6_1:38554830-38554849 | Msa0884670:CDS | 50.0% | |
| GGTTGCCCTTATGGTGTGTT+GGG | - | chr6_1:38554831-38554850 | Msa0884670:CDS | 50.0% | |
| CAGTGGCAGATTGGTAGGTT+AGG | - | chr6_1:38556910-38556929 | Msa0884670:intron | 50.0% | |
| ! | GGCCCACTTTCACCTGATTT+TGG | + | chr6_1:38557529-38557548 | None:intergenic | 50.0% |
| GAGTAGATCTCGCTTCAGTC+TGG | + | chr6_1:38557563-38557582 | None:intergenic | 50.0% | |
| GCGCAGGAACTATTCATCAG+TGG | + | chr6_1:38557804-38557823 | None:intergenic | 50.0% | |
| ATAGTTCCTGCGCATACGTG+TGG | - | chr6_1:38557811-38557830 | Msa0884670:CDS | 50.0% | |
| TTGTACTCCCGTAAGCGGAG+AGG | + | chr6_1:38554749-38554768 | None:intergenic | 55.0% | |
| AATGGTCCACACGTATGCGC+AGG | + | chr6_1:38557820-38557839 | None:intergenic | 55.0% | |
| CGCGGTTGTACTCCCGTAAG+CGG | + | chr6_1:38554754-38554773 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 38553172 | 38557990 | 38553172 | ID=Msa0884670;Name=Msa0884670 |
| chr6_1 | mRNA | 38553172 | 38557990 | 38553172 | ID=Msa0884670-mRNA-1;Parent=Msa0884670;Name=Msa0884670-mRNA-1;_AED=0.01;_eAED=0.01;_QI=23|1|1|1|1|1|4|106|236 |
| chr6_1 | exon | 38553172 | 38553361 | 38553172 | ID=Msa0884670-mRNA-1:exon:8927;Parent=Msa0884670-mRNA-1 |
| chr6_1 | exon | 38553502 | 38553626 | 38553502 | ID=Msa0884670-mRNA-1:exon:8926;Parent=Msa0884670-mRNA-1 |
| chr6_1 | exon | 38554790 | 38555018 | 38554790 | ID=Msa0884670-mRNA-1:exon:8925;Parent=Msa0884670-mRNA-1 |
| chr6_1 | exon | 38557695 | 38557990 | 38557695 | ID=Msa0884670-mRNA-1:exon:8924;Parent=Msa0884670-mRNA-1 |
| chr6_1 | five_prime_UTR | 38557968 | 38557990 | 38557968 | ID=Msa0884670-mRNA-1:five_prime_utr;Parent=Msa0884670-mRNA-1 |
| chr6_1 | CDS | 38557695 | 38557967 | 38557695 | ID=Msa0884670-mRNA-1:cds;Parent=Msa0884670-mRNA-1 |
| chr6_1 | CDS | 38554790 | 38555018 | 38554790 | ID=Msa0884670-mRNA-1:cds;Parent=Msa0884670-mRNA-1 |
| chr6_1 | CDS | 38553502 | 38553626 | 38553502 | ID=Msa0884670-mRNA-1:cds;Parent=Msa0884670-mRNA-1 |
| chr6_1 | CDS | 38553278 | 38553361 | 38553278 | ID=Msa0884670-mRNA-1:cds;Parent=Msa0884670-mRNA-1 |
| chr6_1 | three_prime_UTR | 38553172 | 38553277 | 38553172 | ID=Msa0884670-mRNA-1:three_prime_utr;Parent=Msa0884670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
