AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63459


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63459.t1 MTR_6g086600 99.123 456 4 0 3 458 71 526 0.0 935
MS.gene63459.t1 MTR_6g086600 99.123 456 4 0 3 458 62 517 0.0 933
MS.gene63459.t1 MTR_1g070360 39.759 249 143 5 108 351 21 267 7.50e-55 184
MS.gene63459.t1 MTR_1g016110 40.000 180 103 3 105 279 8 187 1.08e-27 112
MS.gene63459.t1 MTR_1g019620 40.000 180 103 3 105 279 55 234 1.84e-27 112
MS.gene63459.t1 MTR_1g016110 40.000 180 103 3 105 279 55 234 2.08e-27 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63459.t1 AT3G24430 88.367 447 52 0 11 457 78 524 0.0 827
MS.gene63459.t1 AT4G19540 38.996 259 151 5 105 358 39 295 2.08e-53 182
MS.gene63459.t1 AT5G50960 41.667 180 100 4 105 279 55 234 1.25e-33 130

Find 110 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTATACTTTGGCTGATA+TGG 0.137501 6.3:-79388352 MS.gene63459:CDS
CAACACATACTCCTAGATTT+TGG 0.188730 6.3:+79386452 None:intergenic
ATATTTGATGCTGATATTTA+TGG 0.193240 6.3:-79388315 MS.gene63459:CDS
ATGCGCGGCCCTATGGTTTC+TGG 0.254274 6.3:-79388075 MS.gene63459:CDS
GGAGTCAAGTTGGTTTCTTT+TGG 0.256137 6.3:-79388123 MS.gene63459:CDS
AGACATACAGTCGGTCTAAT+AGG 0.268791 6.3:+79386667 None:intergenic
CCCATTGGCCGAATTTCTTC+AGG 0.291086 6.3:+79385674 None:intergenic
TTGTCACAGCTATCCGCTTC+TGG 0.295162 6.3:-79386532 MS.gene63459:intron
TATCCATTTGGTAGAGGTTC+AGG 0.312034 6.3:-79386861 MS.gene63459:CDS
TGAGGATCTGCCACCACTTC+AGG 0.313787 6.3:+79386496 None:intergenic
ACAATTACAGCAGCAGTTAA+TGG 0.320244 6.3:+79387140 None:intergenic
TCTTCAGGTTCAATGTAATC+AGG 0.349940 6.3:+79385689 None:intergenic
CATGTATTCAGTTGGAATTA+TGG 0.354832 6.3:+79388146 None:intergenic
TGGTCCAAGCTTACCAACTA+TGG 0.359534 6.3:-79388295 MS.gene63459:CDS
AGTAAACCTTGCTTATACTT+TGG 0.360089 6.3:-79388361 MS.gene63459:CDS
GCTTATACTTTGGCTGATAT+GGG 0.360827 6.3:-79388351 MS.gene63459:CDS
TTGCAGGTTGTTCAGCAGTT+TGG 0.361065 6.3:-79386712 MS.gene63459:intron
TCATTCCGTCTCACTGTTGC+AGG 0.363783 6.3:+79385851 None:intergenic
ACAATATCTGTTCCAAAGTC+TGG 0.368544 6.3:+79389144 None:intergenic
TGCAATTATGCGCGGCCCTA+TGG 0.383680 6.3:-79388082 MS.gene63459:CDS
CAATTACAGCAGCAGTTAAT+GGG 0.383745 6.3:+79387141 None:intergenic
TTGAATCGCAGGTGTCGTTT+CGG 0.396686 6.3:-79389000 MS.gene63459:intron
ATCGACATGCCTCCGGGAAC+AGG 0.402030 6.3:-79387667 MS.gene63459:CDS
AAGAATTCTTCATCTGAATC+TGG 0.406817 6.3:+79385881 None:intergenic
CAGATCATTGATCCAGACTT+TGG 0.418548 6.3:-79389156 MS.gene63459:CDS
AGTTGAATGTCTCCTGTTCC+CGG 0.419810 6.3:+79387655 None:intergenic
ACATTGAACCTGAAGAAATT+CGG 0.423333 6.3:-79385682 MS.gene63459:CDS
AGGTGGTGGCAGTGCTCCCT+TGG 0.423999 6.3:-79388691 MS.gene63459:CDS
ATTGTCTGCAGTTGATCATA+AGG 0.425058 6.3:+79384824 None:intergenic
GAGGAGATTCACCTTGCAAC+TGG 0.430371 6.3:+79388565 None:intergenic
TTCAATGTAATCAGGAATAT+CGG 0.430600 6.3:+79385697 None:intergenic
GGAAATTCCTCGGTATCAAC+TGG 0.438796 6.3:-79389213 MS.gene63459:CDS
TCCAAGATATTCCAAAATCT+AGG 0.444913 6.3:-79386463 MS.gene63459:CDS
GACATACAGTCGGTCTAATA+GGG 0.445514 6.3:+79386668 None:intergenic
CCTTGTTATCGACATGCCTC+CGG 0.447834 6.3:-79387674 MS.gene63459:CDS
TGGTAGAGGTTCAGGATCTC+AGG 0.450907 6.3:-79386853 MS.gene63459:intron
GGAAAATCGAATATTAGAAA+TGG 0.456568 6.3:-79388265 MS.gene63459:intron
CATAATTCCAACTGAATACA+TGG 0.456907 6.3:-79388145 MS.gene63459:CDS
CATTCAACTCACTTTATGCC+AGG 0.470185 6.3:-79387641 MS.gene63459:intron
TCGATGTTGCAAAAGGAGTT+CGG 0.470587 6.3:-79387091 MS.gene63459:CDS
CCTGAAGAAATTCGGCCAAT+GGG 0.471972 6.3:-79385674 MS.gene63459:CDS
CATATGACAGTTTGAGCAGC+AGG 0.476211 6.3:-79388720 MS.gene63459:intron
CTATCCGCTTCTGGAGATAG+TGG 0.480474 6.3:-79386523 MS.gene63459:CDS
GAGACCATAGTTGGTAAGCT+TGG 0.482760 6.3:+79388291 None:intergenic
CTTGTTATCGACATGCCTCC+GGG 0.484187 6.3:-79387673 MS.gene63459:CDS
GGAAGTTGCTCTGCGAATAA+CGG 0.492258 6.3:+79388626 None:intergenic
GTTTGAGCAGCAGGCAAATG+AGG 0.503635 6.3:-79388711 MS.gene63459:CDS
TGAATACATGGGAGTCAAGT+TGG 0.507061 6.3:-79388133 MS.gene63459:CDS
TCATTTACCACGTCCTTGAT+CGG 0.507285 6.3:+79388953 None:intergenic
GATCCTGAACCTCTACCAAA+TGG 0.508732 6.3:+79386858 None:intergenic
ATGGCCTGATGGGTTTAGTC+AGG 0.515668 6.3:-79385630 MS.gene63459:intron
ATCAGGCCATGTTATTGAAA+CGG 0.517279 6.3:+79385643 None:intergenic
TTCGCAGAGCAACTTCCAGC+AGG 0.518320 6.3:-79388620 MS.gene63459:CDS
TCGTTCATCGATGTTGCAAA+AGG 0.518766 6.3:-79387098 MS.gene63459:CDS
TTGACTCCCATGTATTCAGT+TGG 0.519307 6.3:+79388138 None:intergenic
TTTCAATAACATGGCCTGAT+GGG 0.520664 6.3:-79385640 MS.gene63459:CDS
GAAATCGTCTGTAAACCTGC+TGG 0.523125 6.3:+79388605 None:intergenic
GTTTCAATAACATGGCCTGA+TGG 0.525709 6.3:-79385641 MS.gene63459:CDS
GGTGGTGGCAGTGCTCCCTT+GGG 0.525748 6.3:-79388690 MS.gene63459:CDS
GCAGGAATAGAATACCTTGT+TGG 0.530146 6.3:+79386407 None:intergenic
AGATACTATCCATTTGGTAG+AGG 0.534523 6.3:-79386867 MS.gene63459:CDS
TTTAAACAGGATGAATGGAC+GGG 0.535044 6.3:-79385740 MS.gene63459:intron
TACACCAGCATGTCCGATCA+AGG 0.535639 6.3:-79388966 MS.gene63459:CDS
CTTACCAACTATGGTCTCTC+CGG 0.539146 6.3:-79388286 MS.gene63459:CDS
ACCTGAAGAAATTCGGCCAA+TGG 0.544677 6.3:-79385675 MS.gene63459:CDS
GAAACGGCATAATTTCCCAT+TGG 0.545905 6.3:+79385659 None:intergenic
CAGACAATGGAACGGTTAGT+TGG 0.548019 6.3:-79384809 MS.gene63459:CDS
CGCTTTCAACACGTCATCCT+CGG 0.552280 6.3:+79389185 None:intergenic
ACTCGGTAGTAGTGAGAAGT+TGG 0.557427 6.3:+79388043 None:intergenic
GCTGATATGGGTGCTAGAGT+TGG 0.558279 6.3:-79388339 MS.gene63459:CDS
TTGCAGATCGATAAAGCTCT+AGG 0.558415 6.3:-79389099 MS.gene63459:CDS
ATTACCTGACTAAACCCATC+AGG 0.562451 6.3:+79385626 None:intergenic
ATATGCAGTTGGAAATTCCT+CGG 0.567670 6.3:-79389223 MS.gene63459:intron
GGAACAGATATTGTTACTTG+CGG 0.573860 6.3:-79389135 MS.gene63459:CDS
CAACAGTGAGACGGAATGAT+CGG 0.575612 6.3:-79385847 MS.gene63459:CDS
ACATTGACATTCTTGACCCA+AGG 0.579491 6.3:+79388674 None:intergenic
GCAGCAGGCAAATGAGGTGG+TGG 0.582151 6.3:-79388705 MS.gene63459:CDS
AGCATGTCCGATCAAGGACG+TGG 0.585341 6.3:-79388960 MS.gene63459:intron
ACGTCCTTGATCGGACATGC+TGG 0.585612 6.3:+79388962 None:intergenic
CCGGAGGCATGTCGATAACA+AGG 0.586363 6.3:+79387674 None:intergenic
TAGTGACTCCAGAAACCATA+GGG 0.591488 6.3:+79388067 None:intergenic
TGCCTTGACTGATTTATCGT+AGG 0.595459 6.3:+79385919 None:intergenic
TGCATCCTGCAACAGTGAGA+CGG 0.597022 6.3:-79385856 MS.gene63459:CDS
ATTATGCCGTTTCAATAACA+TGG 0.597601 6.3:-79385649 MS.gene63459:CDS
TTATGATCAACTGCAGACAA+TGG 0.600717 6.3:-79384822 MS.gene63459:CDS
TATCGCTGTATCCAGTTGCA+AGG 0.603418 6.3:-79388576 MS.gene63459:intron
TATCAGCCAAAGTATAAGCA+AGG 0.626958 6.3:+79388355 None:intergenic
TAGTGGAATGCCTGAAGTGG+TGG 0.627513 6.3:-79386506 MS.gene63459:CDS
CATTCCACTATCTCCAGAAG+CGG 0.629862 6.3:+79386519 None:intergenic
TTAAACAGGATGAATGGACG+GGG 0.643427 6.3:-79385739 MS.gene63459:intron
GACCTACGATAAATCAGTCA+AGG 0.644036 6.3:-79385921 MS.gene63459:CDS
GGCTGTTCCAGTTGATACCG+AGG 0.645759 6.3:+79389206 None:intergenic
TTAGTGACTCCAGAAACCAT+AGG 0.646928 6.3:+79388066 None:intergenic
TGTGCTAAAATACGCCAACA+AGG 0.648845 6.3:-79386421 MS.gene63459:intron
ATCAACTGCAGACAATGGAA+CGG 0.651676 6.3:-79384817 MS.gene63459:CDS
GGTATCAACTGGAACAGCCG+AGG 0.653632 6.3:-79389202 MS.gene63459:CDS
CATTGACATTCTTGACCCAA+GGG 0.654050 6.3:+79388675 None:intergenic
TGATCGGTCTGCTCAGAGTG+TGG 0.657675 6.3:-79385831 MS.gene63459:intron
TGAGCAGCAGGCAAATGAGG+TGG 0.665630 6.3:-79388708 MS.gene63459:CDS
CAAGGACGTGCAATTATGCG+CGG 0.675432 6.3:-79388090 MS.gene63459:CDS
ATCTTGGAAACATCGCCTTG+AGG 0.676959 6.3:+79386478 None:intergenic
ATAATTCCAACTGAATACAT+GGG 0.686201 6.3:-79388144 MS.gene63459:CDS
TTCTCGACAACAGCTACACA+AGG 0.689907 6.3:+79386918 None:intergenic
GATCGATAAAGCTCTAGGAG+AGG 0.690504 6.3:-79389094 MS.gene63459:intron
AGATAGTGGAATGCCTGAAG+TGG 0.694339 6.3:-79386509 MS.gene63459:CDS
ATAGGGAGATCAAATAGATG+CGG 0.696235 6.3:+79386685 None:intergenic
GAAGTGGTGGCAGATCCTCA+AGG 0.698028 6.3:-79386493 MS.gene63459:CDS
TAAACAGGATGAATGGACGG+GGG 0.700512 6.3:-79385738 MS.gene63459:intron
TGAATGTCTCCTGTTCCCGG+AGG 0.729128 6.3:+79387658 None:intergenic
AACTTCTCACTACTACCGAG+TGG 0.751912 6.3:-79388041 MS.gene63459:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACGTATTATAATAAAAAATT+AGG + chr6.3:79389216-79389235 None:intergenic 10.0%
!! TAAAGATTATTATATAAATG+TGG + chr6.3:79386353-79386372 None:intergenic 10.0%
!! TTTATGTTATTCAAATTTAT+TGG - chr6.3:79386242-79386261 MS.gene63459:intron 10.0%
!!! GTTTTTAAATGTATAATATA+GGG - chr6.3:79385911-79385930 MS.gene63459:CDS 10.0%
!!! TGTTTTTAAATGTATAATAT+AGG - chr6.3:79385910-79385929 MS.gene63459:CDS 10.0%
!! AAAGTGAAAAAATTTGTATT+CGG + chr6.3:79388117-79388136 None:intergenic 15.0%
!! ATTATACATTTAAAAACACA+TGG + chr6.3:79385908-79385927 None:intergenic 15.0%
!! ATTATGATTATAAGTTAGTA+AGG + chr6.3:79389189-79389208 None:intergenic 15.0%
!! GTAATTAGATTAACTATTTA+TGG + chr6.3:79385665-79385684 None:intergenic 15.0%
!!! CACATTTATATTTTTTTTGA+CGG - chr6.3:79386321-79386340 MS.gene63459:intron 15.0%
!!! TTATTTTGTGTTTATGTAAA+AGG - chr6.3:79387190-79387209 MS.gene63459:intron 15.0%
!! AAACATTCATTTCTTTATCA+TGG + chr6.3:79385320-79385339 None:intergenic 20.0%
!! AGTTAAAGTAATTACACTAT+AGG + chr6.3:79386927-79386946 None:intergenic 20.0%
!! ATATATACTTAATGGAAAAG+CGG + chr6.3:79387955-79387974 None:intergenic 20.0%
!! ATATTTGATGCTGATATTTA+TGG - chr6.3:79385818-79385837 MS.gene63459:intron 20.0%
!! CGTCAAAAAAAATATAAATG+TGG + chr6.3:79386323-79386342 None:intergenic 20.0%
!! GTCAAAAATAAAAATTTGCA+GGG - chr6.3:79385725-79385744 MS.gene63459:CDS 20.0%
!! TAAACTCATTACATATAGAA+GGG - chr6.3:79385263-79385282 MS.gene63459:intron 20.0%
!! TCAAAAATAAAAATTTGCAG+GGG - chr6.3:79385726-79385745 MS.gene63459:CDS 20.0%
!! TGTCAAAAATAAAAATTTGC+AGG - chr6.3:79385724-79385743 MS.gene63459:CDS 20.0%
!! TTTCTATTATGCAATATTCA+GGG + chr6.3:79388001-79388020 None:intergenic 20.0%
!!! AAGCTAACTTTATTTTAAAC+AGG - chr6.3:79388380-79388399 MS.gene63459:CDS 20.0%
!!! AATACAATTTTTGTATCATC+TGG + chr6.3:79388839-79388858 None:intergenic 20.0%
!!! AGTTTTGCATATATACTTAA+TGG + chr6.3:79387963-79387982 None:intergenic 20.0%
!!! ATTTCTAATATTCGATTTTC+CGG + chr6.3:79385869-79385888 None:intergenic 20.0%
!!! TAATTTAAAAAGCATCAAGT+AGG + chr6.3:79386299-79386318 None:intergenic 20.0%
!!! TTAAATGACATGATTTGTTA+AGG + chr6.3:79386191-79386210 None:intergenic 20.0%
!!! TTTAAAGCTTTCTTTTTCAA+TGG + chr6.3:79388557-79388576 None:intergenic 20.0%
!!! TTTATTTTAAACAGGATGAA+TGG - chr6.3:79388388-79388407 MS.gene63459:CDS 20.0%
!!! TTTTCTATTATGCAATATTC+AGG + chr6.3:79388002-79388021 None:intergenic 20.0%
! AAAAATAAAAATTTGCAGGG+GGG - chr6.3:79385728-79385747 MS.gene63459:CDS 25.0%
! AAAGTTCCTTCTGTTAAAAA+CGG - chr6.3:79388903-79388922 MS.gene63459:intron 25.0%
! AATATGACCAATATATGATG+AGG + chr6.3:79385590-79385609 None:intergenic 25.0%
! ACACTTTCGGATAAATTATA+TGG + chr6.3:79388812-79388831 None:intergenic 25.0%
! ATAATTCCAACTGAATACAT+GGG - chr6.3:79385989-79386008 MS.gene63459:intron 25.0%
! ATTGCATAATAGAAAAACTG+CGG - chr6.3:79388006-79388025 MS.gene63459:intron 25.0%
! CAAAAATAAAAATTTGCAGG+GGG - chr6.3:79385727-79385746 MS.gene63459:CDS 25.0%
! CTTGAGTTTCATGTAATTAT+GGG - chr6.3:79385367-79385386 MS.gene63459:intron 25.0%
! GGAAAATCGAATATTAGAAA+TGG - chr6.3:79385868-79385887 MS.gene63459:CDS 25.0%
! GTAAACTCATTACATATAGA+AGG - chr6.3:79385262-79385281 MS.gene63459:intron 25.0%
! TCTTGAGTTTCATGTAATTA+TGG - chr6.3:79385366-79385385 MS.gene63459:intron 25.0%
! TTCAATGTAATCAGGAATAT+CGG + chr6.3:79388439-79388458 None:intergenic 25.0%
! TTTGATGTCTTAAAAATGCA+GGG + chr6.3:79388763-79388782 None:intergenic 25.0%
!! ATTTGGTTTACAAAATGTAG+GGG - chr6.3:79386424-79386443 MS.gene63459:CDS 25.0%
!! GACACAAAAAATGTTTCTTT+TGG - chr6.3:79386750-79386769 MS.gene63459:intron 25.0%
!! GATTTGGTTTACAAAATGTA+GGG - chr6.3:79386423-79386442 MS.gene63459:CDS 25.0%
!! TGTTTTCTTATATATGCAGT+TGG - chr6.3:79384899-79384918 MS.gene63459:intron 25.0%
!!! CAAAAATTGTATTTTTTCCG+CGG - chr6.3:79388846-79388865 MS.gene63459:intron 25.0%
!!! CATTTTTAAGACATCAAACA+TGG - chr6.3:79388765-79388784 MS.gene63459:intron 25.0%
!!! TGATTTGGTTTACAAAATGT+AGG - chr6.3:79386422-79386441 MS.gene63459:CDS 25.0%
AAGAATTCTTCATCTGAATC+TGG + chr6.3:79388255-79388274 None:intergenic 30.0%
AAGTTGAACCTAAAGCAAAA+TGG + chr6.3:79388986-79389005 None:intergenic 30.0%
AATTACATGAAACTCAAGAC+TGG + chr6.3:79385365-79385384 None:intergenic 30.0%
AATTGTCTCGGTTAGAAATA+TGG - chr6.3:79388603-79388622 MS.gene63459:CDS 30.0%
AATTTGTATTCGGATGCATT+AGG + chr6.3:79388107-79388126 None:intergenic 30.0%
ACATTGAACCTGAAGAAATT+CGG - chr6.3:79388451-79388470 MS.gene63459:intron 30.0%
AGATATGCTATGCATAGAAT+AGG - chr6.3:79386143-79386162 MS.gene63459:intron 30.0%
AGCACATATATTAGGTTTGA+AGG + chr6.3:79388659-79388678 None:intergenic 30.0%
AGTAAACCTTGCTTATACTT+TGG - chr6.3:79385772-79385791 MS.gene63459:intron 30.0%
ATAAATCAGCAGTCAACAAA+TGG + chr6.3:79389134-79389153 None:intergenic 30.0%
ATGAGACGAAATGTAAATCA+TGG + chr6.3:79385687-79385706 None:intergenic 30.0%
CATAATTCCAACTGAATACA+TGG - chr6.3:79385988-79386007 MS.gene63459:intron 30.0%
CATATCAAGCATAACCTATT+AGG + chr6.3:79386396-79386415 None:intergenic 30.0%
CATGTATTCAGTTGGAATTA+TGG + chr6.3:79385990-79386009 None:intergenic 30.0%
CATTAGCATATCAATTGTCT+CGG - chr6.3:79388591-79388610 MS.gene63459:CDS 30.0%
CTCATATTGAGCTGAAATTT+AGG - chr6.3:79386843-79386862 MS.gene63459:intron 30.0%
GAATAGTATCAAGTATGTGT+TGG + chr6.3:79387150-79387169 None:intergenic 30.0%
GAGAGAAGAGAATAAACTAA+AGG + chr6.3:79387519-79387538 None:intergenic 30.0%
GATATGCTATGCATAGAATA+GGG - chr6.3:79386144-79386163 MS.gene63459:intron 30.0%
GGAAAAAGATACTATCCATT+TGG - chr6.3:79387260-79387279 MS.gene63459:intron 30.0%
GTAGTTCAATACATACTCTA+GGG + chr6.3:79386277-79386296 None:intergenic 30.0%
GTTTGATGTCTTAAAAATGC+AGG + chr6.3:79388764-79388783 None:intergenic 30.0%
TAAATCAGCAGTCAACAAAT+GGG + chr6.3:79389133-79389152 None:intergenic 30.0%
TCACACGTAAAATTTGATTG+CGG + chr6.3:79386902-79386921 None:intergenic 30.0%
TCCAAGATATTCCAAAATCT+AGG - chr6.3:79387670-79387689 MS.gene63459:CDS 30.0%
TGAATCTCCTCATCATATAT+TGG - chr6.3:79385580-79385599 MS.gene63459:intron 30.0%
TGCAATGTGAAACAAACTAA+AGG + chr6.3:79386533-79386552 None:intergenic 30.0%
TGTGAAACAAACTAAAGGAA+TGG + chr6.3:79386528-79386547 None:intergenic 30.0%
TTGATGTCTTAAAAATGCAG+GGG + chr6.3:79388762-79388781 None:intergenic 30.0%
TTTGGTCAAGCACATATATT+AGG + chr6.3:79388667-79388686 None:intergenic 30.0%
! AAAGTTAGCTTCAAATGAGA+TGG + chr6.3:79388371-79388390 None:intergenic 30.0%
! ATTATGCCGTTTCAATAACA+TGG - chr6.3:79388484-79388503 MS.gene63459:intron 30.0%
! CAAAATCACTGCTCAATTTT+CGG - chr6.3:79387834-79387853 MS.gene63459:intron 30.0%
! CTTGATATGTAGTCTTGATT+TGG - chr6.3:79386407-79386426 MS.gene63459:intron 30.0%
! TAAGTCGTTTGCGATAATTT+TGG - chr6.3:79385609-79385628 MS.gene63459:intron 30.0%
! TGGATAGTATCTTTTTCCAT+CGG + chr6.3:79387258-79387277 None:intergenic 30.0%
! TTTATCCAGAAGTATACTTC+TGG - chr6.3:79386725-79386744 MS.gene63459:intron 30.0%
! TTTTAAACAGGATGAATGGA+CGG - chr6.3:79388392-79388411 MS.gene63459:intron 30.0%
!!! ACATTGCATTTTAACTGTTG+TGG - chr6.3:79386545-79386564 MS.gene63459:intron 30.0%
!!! ATTACAATTTTTTTCCCTGG+TGG - chr6.3:79389051-79389070 MS.gene63459:intron 30.0%
!!! GCAATTACAATTTTTTTCCC+TGG - chr6.3:79389048-79389067 MS.gene63459:intron 30.0%
!!! TCCTAGATTTTGGAATATCT+TGG + chr6.3:79387674-79387693 None:intergenic 30.0%
AAATCAGCAGTCAACAAATG+GGG + chr6.3:79389132-79389151 None:intergenic 35.0%
AAGTTATCAGAAAGGCTTCA+TGG + chr6.3:79386820-79386839 None:intergenic 35.0%
AATCAAACGCCTCAAACTTT+CGG - chr6.3:79385068-79385087 MS.gene63459:intron 35.0%
ACAATATCTGTTCCAAAGTC+TGG + chr6.3:79384992-79385011 None:intergenic 35.0%
ACAATTACAGCAGCAGTTAA+TGG + chr6.3:79386996-79387015 None:intergenic 35.0%
AGATACTATCCATTTGGTAG+AGG - chr6.3:79387266-79387285 MS.gene63459:intron 35.0%
AGGAATGGTAAGTTATAACC+TGG + chr6.3:79386513-79386532 None:intergenic 35.0%
AGGCCTAAAGCAATCTTTAA+AGG - chr6.3:79388959-79388978 MS.gene63459:intron 35.0%
AGTTATCAGAAAGGCTTCAT+GGG + chr6.3:79386819-79386838 None:intergenic 35.0%
ATAGGGAGATCAAATAGATG+CGG + chr6.3:79387451-79387470 None:intergenic 35.0%
ATATGCAGTTGGAAATTCCT+CGG - chr6.3:79384910-79384929 MS.gene63459:intron 35.0%
ATCAGGCCATGTTATTGAAA+CGG + chr6.3:79388493-79388512 None:intergenic 35.0%
ATGAAGCCTTTCTGATAACT+TGG - chr6.3:79386819-79386838 MS.gene63459:intron 35.0%
ATTGTCTGCAGTTGATCATA+AGG + chr6.3:79389312-79389331 None:intergenic 35.0%
CAATTACAGCAGCAGTTAAT+GGG + chr6.3:79386995-79387014 None:intergenic 35.0%
CCAAACTTCAGAACATCAAA+TGG - chr6.3:79388682-79388701 MS.gene63459:CDS 35.0%
GAAAACTTTGGGCTGAAATA+TGG - chr6.3:79386873-79386892 MS.gene63459:CDS 35.0%
GATTGTTCGATCATATTTGC+AGG - chr6.3:79387405-79387424 MS.gene63459:intron 35.0%
GCTTATACTTTGGCTGATAT+GGG - chr6.3:79385782-79385801 MS.gene63459:intron 35.0%
GGCCTAAAGCAATCTTTAAA+GGG - chr6.3:79388960-79388979 MS.gene63459:intron 35.0%
GGTAGTTCAATACATACTCT+AGG + chr6.3:79386278-79386297 None:intergenic 35.0%
GTAATGTACACACATCAGAT+TGG - chr6.3:79388525-79388544 MS.gene63459:intron 35.0%
TATCAGCCAAAGTATAAGCA+AGG + chr6.3:79385781-79385800 None:intergenic 35.0%
TCAGAACATCAAATGGTGTT+CGG - chr6.3:79388689-79388708 MS.gene63459:CDS 35.0%
TCCTTTCCAGAAAACCTAAT+AGG - chr6.3:79386379-79386398 MS.gene63459:intron 35.0%
TCTCGGTTAGAAATATGGTT+TGG - chr6.3:79388608-79388627 MS.gene63459:CDS 35.0%
TGAAGCCTTTCTGATAACTT+GGG - chr6.3:79386820-79386839 MS.gene63459:intron 35.0%
TGATGTCTTAAAAATGCAGG+GGG + chr6.3:79388761-79388780 None:intergenic 35.0%
TGCTTATACTTTGGCTGATA+TGG - chr6.3:79385781-79385800 MS.gene63459:intron 35.0%
TTATGATCAACTGCAGACAA+TGG - chr6.3:79389311-79389330 MS.gene63459:intron 35.0%
TTTAAACAGGATGAATGGAC+GGG - chr6.3:79388393-79388412 MS.gene63459:intron 35.0%
TTTCAATAACATGGCCTGAT+GGG - chr6.3:79388493-79388512 MS.gene63459:intron 35.0%
TTTCAGAAATGCATACCACT+CGG + chr6.3:79386110-79386129 None:intergenic 35.0%
! AAGTTTTTCCTTTGAATCGC+AGG - chr6.3:79385122-79385141 MS.gene63459:intron 35.0%
! ATCATCTGGAAGTACACTTT+CGG + chr6.3:79388825-79388844 None:intergenic 35.0%
! CAACACATACTCCTAGATTT+TGG + chr6.3:79387684-79387703 None:intergenic 35.0%
! GCATAACCTATTAGGTTTTC+TGG + chr6.3:79386388-79386407 None:intergenic 35.0%
! GGAACAGATATTGTTACTTG+CGG - chr6.3:79384998-79385017 MS.gene63459:intron 35.0%
! GGAATTATGGTCTTCTTTTC+TGG + chr6.3:79385977-79385996 None:intergenic 35.0%
! TCGATGAACGATAGTTTTTG+AGG + chr6.3:79387026-79387045 None:intergenic 35.0%
! TCGGATGTTTTCAAAGCTTA+AGG - chr6.3:79387061-79387080 MS.gene63459:intron 35.0%
! TCTTCAGGTTCAATGTAATC+AGG + chr6.3:79388447-79388466 None:intergenic 35.0%
! TTGGTTTCTTTTGGATTTGC+TGG - chr6.3:79386019-79386038 MS.gene63459:intron 35.0%
!! ACCTATTAGGTTTTCTGGAA+AGG + chr6.3:79386383-79386402 None:intergenic 35.0%
!! CCATTTGATGTTCTGAAGTT+TGG + chr6.3:79388685-79388704 None:intergenic 35.0%
!! TCAATACATACTCTAGGGTA+GGG + chr6.3:79386272-79386291 None:intergenic 35.0%
!! TTAAAGGGCCATTTTGCTTT+AGG - chr6.3:79388975-79388994 MS.gene63459:CDS 35.0%
!! TTCAATACATACTCTAGGGT+AGG + chr6.3:79386273-79386292 None:intergenic 35.0%
!!! GGTTTTAGTTGGTTTATCCT+TGG - chr6.3:79389086-79389105 MS.gene63459:intron 35.0%
!!! TGCATTTTAACTGTTGTGGT+AGG - chr6.3:79386549-79386568 MS.gene63459:intron 35.0%
AAGGAGCAATCTGCATCATA+TGG + chr6.3:79389293-79389312 None:intergenic 40.0%
ACATTGACATTCTTGACCCA+AGG + chr6.3:79385462-79385481 None:intergenic 40.0%
ACTCTAACCTACGTCAGATA+TGG + chr6.3:79385226-79385245 None:intergenic 40.0%
AGACATACAGTCGGTCTAAT+AGG + chr6.3:79387469-79387488 None:intergenic 40.0%
AGTAACACGAGACATACAGT+CGG + chr6.3:79387478-79387497 None:intergenic 40.0%
ATATCTGACGTAGGTTAGAG+TGG - chr6.3:79385225-79385244 MS.gene63459:intron 40.0%
ATCAACTGCAGACAATGGAA+CGG - chr6.3:79389316-79389335 MS.gene63459:intron 40.0%
ATGAGCCCAAGTTATCAGAA+AGG + chr6.3:79386828-79386847 None:intergenic 40.0%
ATTACCTGACTAAACCCATC+AGG + chr6.3:79388510-79388529 None:intergenic 40.0%
CACGTAAAATTTGATTGCGG+TGG + chr6.3:79386899-79386918 None:intergenic 40.0%
CAGATCATTGATCCAGACTT+TGG - chr6.3:79384977-79384996 MS.gene63459:intron 40.0%
CATTCAACTCACTTTATGCC+AGG - chr6.3:79386492-79386511 MS.gene63459:CDS 40.0%
CATTCTCGCTCTCTTCTATA+GGG - chr6.3:79387913-79387932 MS.gene63459:intron 40.0%
CATTGACATTCTTGACCCAA+GGG + chr6.3:79385461-79385480 None:intergenic 40.0%
CCAACTAAAACCCGAACTTT+AGG + chr6.3:79389078-79389097 None:intergenic 40.0%
CGTGTACGCTGTTCAATAAA+GGG - chr6.3:79388722-79388741 MS.gene63459:intron 40.0%
CTTGTCAAATGTCATCAAGC+AGG + chr6.3:79387747-79387766 None:intergenic 40.0%
GAAACGGCATAATTTCCCAT+TGG + chr6.3:79388477-79388496 None:intergenic 40.0%
GACATACAGTCGGTCTAATA+GGG + chr6.3:79387468-79387487 None:intergenic 40.0%
GACCTACGATAAATCAGTCA+AGG - chr6.3:79388212-79388231 MS.gene63459:intron 40.0%
GCAGGAATAGAATACCTTGT+TGG + chr6.3:79387729-79387748 None:intergenic 40.0%
GTCAGATATGGCTCAAACAA+TGG + chr6.3:79385214-79385233 None:intergenic 40.0%
GTTTCAATAACATGGCCTGA+TGG - chr6.3:79388492-79388511 MS.gene63459:intron 40.0%
TAGGCCAGACTGAAAACTTT+GGG - chr6.3:79386862-79386881 MS.gene63459:CDS 40.0%
TAGTGACTCCAGAAACCATA+GGG + chr6.3:79386069-79386088 None:intergenic 40.0%
TATACTTCCGAAGTGGCTTT+GGG - chr6.3:79386776-79386795 MS.gene63459:intron 40.0%
TATCCATTTGGTAGAGGTTC+AGG - chr6.3:79387272-79387291 MS.gene63459:intron 40.0%
TCATTCTCGCTCTCTTCTAT+AGG - chr6.3:79387912-79387931 MS.gene63459:intron 40.0%
TCATTTACCACGTCCTTGAT+CGG + chr6.3:79385183-79385202 None:intergenic 40.0%
TCGATGTTGCAAAAGGAGTT+CGG - chr6.3:79387042-79387061 MS.gene63459:intron 40.0%
TCGTTCATCGATGTTGCAAA+AGG - chr6.3:79387035-79387054 MS.gene63459:intron 40.0%
TGAATACATGGGAGTCAAGT+TGG - chr6.3:79386000-79386019 MS.gene63459:intron 40.0%
TGTGCTAAAATACGCCAACA+AGG - chr6.3:79387712-79387731 MS.gene63459:intron 40.0%
TTAAACAGGATGAATGGACG+GGG - chr6.3:79388394-79388413 MS.gene63459:intron 40.0%
TTAGGCCAGACTGAAAACTT+TGG - chr6.3:79386861-79386880 MS.gene63459:CDS 40.0%
TTAGTGACTCCAGAAACCAT+AGG + chr6.3:79386070-79386089 None:intergenic 40.0%
TTGACTCCCATGTATTCAGT+TGG + chr6.3:79385998-79386017 None:intergenic 40.0%
TTGCAGATCGATAAAGCTCT+AGG - chr6.3:79385034-79385053 MS.gene63459:intron 40.0%
! GGCCCTTTAAAGATTGCTTT+AGG + chr6.3:79388965-79388984 None:intergenic 40.0%
! GTTGGTTAGAAGCATGAGAT+TGG + chr6.3:79387132-79387151 None:intergenic 40.0%
! TAGTTGGTTTATCCTTGGAC+CGG - chr6.3:79389091-79389110 MS.gene63459:intron 40.0%
! TGCCTTGACTGATTTATCGT+AGG + chr6.3:79388217-79388236 None:intergenic 40.0%
! TTGGAAGTATACTTCCGAAG+TGG - chr6.3:79386769-79386788 MS.gene63459:intron 40.0%
!! CACTTTGTTGTTGGAGTTGT+AGG - chr6.3:79388033-79388052 MS.gene63459:intron 40.0%
!! CCTAAAGTTCGGGTTTTAGT+TGG - chr6.3:79389075-79389094 MS.gene63459:intron 40.0%
!! GAACGATAGTTTTTGAGGAG+TGG + chr6.3:79387021-79387040 None:intergenic 40.0%
!! GGTGTACCGTTTTTAACAGA+AGG + chr6.3:79388912-79388931 None:intergenic 40.0%
!! TTTTAACTGTTGTGGTAGGC+TGG - chr6.3:79386553-79386572 MS.gene63459:intron 40.0%
!!! ATGTGTCATTTTGATGCCGA+TGG - chr6.3:79387239-79387258 MS.gene63459:intron 40.0%
!!! GGAGTCAAGTTGGTTTCTTT+TGG - chr6.3:79386010-79386029 MS.gene63459:intron 40.0%
!!! TCTTTTGGATTTGCTGGACA+AGG - chr6.3:79386025-79386044 MS.gene63459:intron 40.0%
AAACGACACCTGCGATTCAA+AGG + chr6.3:79385133-79385152 None:intergenic 45.0%
AACTTCTCACTACTACCGAG+TGG - chr6.3:79386092-79386111 MS.gene63459:intron 45.0%
ACCTGAAGAAATTCGGCCAA+TGG - chr6.3:79388458-79388477 MS.gene63459:intron 45.0%
ACTCGGTAGTAGTGAGAAGT+TGG + chr6.3:79386093-79386112 None:intergenic 45.0%
AGCAAAAAGACCACATGCGT+CGG + chr6.3:79389014-79389033 None:intergenic 45.0%
AGTTGAATGTCTCCTGTTCC+CGG + chr6.3:79386481-79386500 None:intergenic 45.0%
ATCTTGGAAACATCGCCTTG+AGG + chr6.3:79387658-79387677 None:intergenic 45.0%
CAACAGTGAGACGGAATGAT+CGG - chr6.3:79388286-79388305 MS.gene63459:CDS 45.0%
CAAGATCAGACCAGTCAATC+GGG - chr6.3:79386604-79386623 MS.gene63459:intron 45.0%
CAGACAATGGAACGGTTAGT+TGG - chr6.3:79389324-79389343 MS.gene63459:intron 45.0%
CATATGACAGTTTGAGCAGC+AGG - chr6.3:79385413-79385432 MS.gene63459:intron 45.0%
CATTCCACTATCTCCAGAAG+CGG + chr6.3:79387617-79387636 None:intergenic 45.0%
CCAAGATCAGACCAGTCAAT+CGG - chr6.3:79386603-79386622 MS.gene63459:intron 45.0%
CCTGAAGAAATTCGGCCAAT+GGG - chr6.3:79388459-79388478 MS.gene63459:intron 45.0%
CTGACGTCATGTGAGTAGTT+CGG - chr6.3:79388879-79388898 MS.gene63459:intron 45.0%
CTGGTCTGATCTTGGCTTAA+GGG + chr6.3:79386598-79386617 None:intergenic 45.0%
CTTACCAACTATGGTCTCTC+CGG - chr6.3:79385847-79385866 MS.gene63459:CDS 45.0%
CTTTAGGCCTCATTCATCCT+TGG + chr6.3:79388949-79388968 None:intergenic 45.0%
GAAATCGTCTGTAAACCTGC+TGG + chr6.3:79385531-79385550 None:intergenic 45.0%
GATCCTGAACCTCTACCAAA+TGG + chr6.3:79387278-79387297 None:intergenic 45.0%
GCGTGTACGCTGTTCAATAA+AGG - chr6.3:79388721-79388740 MS.gene63459:intron 45.0%
GGAAATTCCTCGGTATCAAC+TGG - chr6.3:79384920-79384939 MS.gene63459:intron 45.0%
GGAAGTTGCTCTGCGAATAA+CGG + chr6.3:79385510-79385529 None:intergenic 45.0%
GTATACTTCCGAAGTGGCTT+TGG - chr6.3:79386775-79386794 MS.gene63459:intron 45.0%
GTTTGAGCCATATCTGACGT+AGG - chr6.3:79385216-79385235 MS.gene63459:intron 45.0%
TAAACAGGATGAATGGACGG+GGG - chr6.3:79388395-79388414 MS.gene63459:intron 45.0%
TATACTTCCGGACACATGTG+TGG + chr6.3:79386680-79386699 None:intergenic 45.0%
TATCGCTGTATCCAGTTGCA+AGG - chr6.3:79385557-79385576 MS.gene63459:intron 45.0%
TGACGTCATGTGAGTAGTTC+GGG - chr6.3:79388880-79388899 MS.gene63459:intron 45.0%
TGGAAAAGCGGTCTACTTGT+CGG + chr6.3:79387943-79387962 None:intergenic 45.0%
TGGTCCAAGCTTACCAACTA+TGG - chr6.3:79385838-79385857 MS.gene63459:CDS 45.0%
TGTCTTAAAAATGCAGGGGG+TGG + chr6.3:79388758-79388777 None:intergenic 45.0%
TTCTCGACAACAGCTACACA+AGG + chr6.3:79387218-79387237 None:intergenic 45.0%
TTGCAGGTTGTTCAGCAGTT+TGG - chr6.3:79387421-79387440 MS.gene63459:intron 45.0%
! AAAAATTTGCAGGGGGGTGT+AGG - chr6.3:79385734-79385753 MS.gene63459:CDS 45.0%
! ACTGGTCTGATCTTGGCTTA+AGG + chr6.3:79386599-79386618 None:intergenic 45.0%
! ATACTTCCGAAGTGGCTTTG+GGG - chr6.3:79386777-79386796 MS.gene63459:intron 45.0%
! CCCATCCAGAAGTATACTTC+CGG + chr6.3:79386692-79386711 None:intergenic 45.0%
! CCGGAAGTATACTTCTGGAT+GGG - chr6.3:79386689-79386708 MS.gene63459:CDS 45.0%
! GTCGTCCAGAAGTATACTTC+TGG + chr6.3:79386733-79386752 None:intergenic 45.0%
! GTGGTGGAAAAAGAAGCTCT+CGG + chr6.3:79386661-79386680 None:intergenic 45.0%
! TCAGCCCAAAGTTTTCAGTC+TGG + chr6.3:79386869-79386888 None:intergenic 45.0%
! TCCGGAAGTATACTTCTGGA+TGG - chr6.3:79386688-79386707 MS.gene63459:CDS 45.0%
! TCTGCGAATAACGGTTTTGC+TGG + chr6.3:79385501-79385520 None:intergenic 45.0%
! TGTGTCCGGAAGTATACTTC+TGG - chr6.3:79386684-79386703 MS.gene63459:CDS 45.0%
! TTTTCCACCACACATGTGTC+CGG - chr6.3:79386670-79386689 MS.gene63459:intron 45.0%
! TTTTCCGGAGAGACCATAGT+TGG + chr6.3:79385854-79385873 None:intergenic 45.0%
!! AACTTTTTAGCCGACGCATG+TGG - chr6.3:79389001-79389020 MS.gene63459:intron 45.0%
!! AGATAGTGGAATGCCTGAAG+TGG - chr6.3:79387624-79387643 MS.gene63459:intron 45.0%
!! ATACATACTCTAGGGTAGGG+TGG + chr6.3:79386269-79386288 None:intergenic 45.0%
!! GAGACCATAGTTGGTAAGCT+TGG + chr6.3:79385845-79385864 None:intergenic 45.0%
!! GATCGATAAAGCTCTAGGAG+AGG - chr6.3:79385039-79385058 MS.gene63459:intron 45.0%
!! TTGAATCGCAGGTGTCGTTT+CGG - chr6.3:79385133-79385152 MS.gene63459:intron 45.0%
ACGTCAGATATGCACATCCG+CGG + chr6.3:79388866-79388885 None:intergenic 50.0%
AGGCTGGAATTTCACTCGCT+TGG - chr6.3:79386569-79386588 MS.gene63459:intron 50.0%
AGTCGAGCCAAGGATGAATG+AGG - chr6.3:79388939-79388958 MS.gene63459:intron 50.0%
ATCAAGCTGACCCGATTGAC+TGG + chr6.3:79386617-79386636 None:intergenic 50.0%
CAAGGACGTGCAATTATGCG+CGG - chr6.3:79386043-79386062 MS.gene63459:intron 50.0%
CACGTGTTGCCGAAAGTTTG+AGG + chr6.3:79385080-79385099 None:intergenic 50.0%
CCCATTGGCCGAATTTCTTC+AGG + chr6.3:79388462-79388481 None:intergenic 50.0%
CGCTTTCAACACGTCATCCT+CGG + chr6.3:79384951-79384970 None:intergenic 50.0%
GAGGAGATTCACCTTGCAAC+TGG + chr6.3:79385571-79385590 None:intergenic 50.0%
GCTGATATGGGTGCTAGAGT+TGG - chr6.3:79385794-79385813 MS.gene63459:intron 50.0%
GGGGATCTACAGTACAGATC+CGG + chr6.3:79389113-79389132 None:intergenic 50.0%
GTTGGAGTTGTAGGCACAAC+TGG - chr6.3:79388042-79388061 MS.gene63459:CDS 50.0%
GTTTGAGCAGCAGGCAAATG+AGG - chr6.3:79385422-79385441 MS.gene63459:intron 50.0%
TACACCAGCATGTCCGATCA+AGG - chr6.3:79385167-79385186 MS.gene63459:intron 50.0%
TACAGTACAGATCCGGTCCA+AGG + chr6.3:79389106-79389125 None:intergenic 50.0%
TAGTGGAATGCCTGAAGTGG+TGG - chr6.3:79387627-79387646 MS.gene63459:intron 50.0%
TCATTCCGTCTCACTGTTGC+AGG + chr6.3:79388285-79388304 None:intergenic 50.0%
TGCATCCTGCAACAGTGAGA+CGG - chr6.3:79388277-79388296 MS.gene63459:CDS 50.0%
TGGTAGAGGTTCAGGATCTC+AGG - chr6.3:79387280-79387299 MS.gene63459:intron 50.0%
TTGTCACAGCTATCCGCTTC+TGG - chr6.3:79387601-79387620 MS.gene63459:intron 50.0%
! CATTCATCCTTGGCTCGACT+CGG + chr6.3:79388939-79388958 None:intergenic 50.0%
! CCTTGTTATCGACATGCCTC+CGG - chr6.3:79386459-79386478 MS.gene63459:CDS 50.0%
! CTATCCGCTTCTGGAGATAG+TGG - chr6.3:79387610-79387629 MS.gene63459:intron 50.0%
! CTTGTTATCGACATGCCTCC+GGG - chr6.3:79386460-79386479 MS.gene63459:CDS 50.0%
! TCCCTGGTGGACCTAAAGTT+CGG - chr6.3:79389064-79389083 MS.gene63459:intron 50.0%
! TCGGCTTGATTTCAGCTCGA+AGG + chr6.3:79386642-79386661 None:intergenic 50.0%
! TGCGGCAGTCACTTTGTTGT+TGG - chr6.3:79388024-79388043 MS.gene63459:intron 50.0%
!! ATGGCCTGATGGGTTTAGTC+AGG - chr6.3:79388503-79388522 MS.gene63459:intron 50.0%
!! CCGATTGACTGGTCTGATCT+TGG + chr6.3:79386606-79386625 None:intergenic 50.0%
!! TACTTCCGAAGTGGCTTTGG+GGG - chr6.3:79386778-79386797 MS.gene63459:intron 50.0%
ACCCGAACTTTAGGTCCACC+AGG + chr6.3:79389069-79389088 None:intergenic 55.0%
ACGTCCTTGATCGGACATGC+TGG + chr6.3:79385174-79385193 None:intergenic 55.0%
ACTTCCGGACACATGTGTGG+TGG + chr6.3:79386677-79386696 None:intergenic 55.0%
AGCATGTCCGATCAAGGACG+TGG - chr6.3:79385173-79385192 MS.gene63459:intron 55.0%
CCCGAACTTTAGGTCCACCA+GGG + chr6.3:79389068-79389087 None:intergenic 55.0%
GAAGTGGTGGCAGATCCTCA+AGG - chr6.3:79387640-79387659 MS.gene63459:intron 55.0%
GAGGTTCAGGATCTCAGGCA+TGG - chr6.3:79387285-79387304 MS.gene63459:intron 55.0%
GGTATCAACTGGAACAGCCG+AGG - chr6.3:79384931-79384950 MS.gene63459:intron 55.0%
TGAATGTCTCCTGTTCCCGG+AGG + chr6.3:79386478-79386497 None:intergenic 55.0%
TGAGCAGCAGGCAAATGAGG+TGG - chr6.3:79385425-79385444 MS.gene63459:intron 55.0%
TGAGGATCTGCCACCACTTC+AGG + chr6.3:79387640-79387659 None:intergenic 55.0%
TGATCGGTCTGCTCAGAGTG+TGG - chr6.3:79388302-79388321 MS.gene63459:CDS 55.0%
TGCAATTATGCGCGGCCCTA+TGG - chr6.3:79386051-79386070 MS.gene63459:intron 55.0%
TTCGCAGAGCAACTTCCAGC+AGG - chr6.3:79385513-79385532 MS.gene63459:intron 55.0%
! CCCTGGTGGACCTAAAGTTC+GGG - chr6.3:79389065-79389084 MS.gene63459:intron 55.0%
! CCGGAGGCATGTCGATAACA+AGG + chr6.3:79386462-79386481 None:intergenic 55.0%
! GGCTGTTCCAGTTGATACCG+AGG + chr6.3:79384930-79384949 None:intergenic 55.0%
ATCGACATGCCTCCGGGAAC+AGG - chr6.3:79386466-79386485 MS.gene63459:CDS 60.0%
ATGCGCGGCCCTATGGTTTC+TGG - chr6.3:79386058-79386077 MS.gene63459:intron 60.0%
GCAGCAGGCAAATGAGGTGG+TGG - chr6.3:79385428-79385447 MS.gene63459:intron 60.0%
!! TTCCGAAGTGGCTTTGGGGG+CGG - chr6.3:79386781-79386800 MS.gene63459:intron 60.0%
ACCACAGCCGAGTCGAGCCA+AGG - chr6.3:79388929-79388948 MS.gene63459:intron 65.0%
TCCCGCCCCCAAAGCCACTT+CGG + chr6.3:79386786-79386805 None:intergenic 65.0%
! AGGTGGTGGCAGTGCTCCCT+TGG - chr6.3:79385442-79385461 MS.gene63459:intron 65.0%
! GGTGGTGGCAGTGCTCCCTT+GGG - chr6.3:79385443-79385462 MS.gene63459:intron 65.0%
!! TCCGAAGTGGCTTTGGGGGC+GGG - chr6.3:79386782-79386801 MS.gene63459:intron 65.0%
!! TCCTTGGCTCGACTCGGCTG+TGG + chr6.3:79388933-79388952 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 79384799 79389356 79384799 ID=MS.gene63459
chr6.3 mRNA 79384799 79389356 79384799 ID=MS.gene63459.t1;Parent=MS.gene63459
chr6.3 exon 79389353 79389356 79389353 ID=MS.gene63459.t1.exon1;Parent=MS.gene63459.t1
chr6.3 CDS 79389353 79389356 79389353 ID=cds.MS.gene63459.t1;Parent=MS.gene63459.t1
chr6.3 exon 79389095 79389237 79389095 ID=MS.gene63459.t1.exon2;Parent=MS.gene63459.t1
chr6.3 CDS 79389095 79389237 79389095 ID=cds.MS.gene63459.t1;Parent=MS.gene63459.t1
chr6.3 exon 79388961 79389011 79388961 ID=MS.gene63459.t1.exon3;Parent=MS.gene63459.t1
chr6.3 CDS 79388961 79389011 79388961 ID=cds.MS.gene63459.t1;Parent=MS.gene63459.t1
chr6.3 exon 79388577 79388732 79388577 ID=MS.gene63459.t1.exon4;Parent=MS.gene63459.t1
chr6.3 CDS 79388577 79388732 79388577 ID=cds.MS.gene63459.t1;Parent=MS.gene63459.t1
chr6.3 exon 79388266 79388409 79388266 ID=MS.gene63459.t1.exon5;Parent=MS.gene63459.t1
chr6.3 CDS 79388266 79388409 79388266 ID=cds.MS.gene63459.t1;Parent=MS.gene63459.t1
chr6.3 exon 79388042 79388184 79388042 ID=MS.gene63459.t1.exon6;Parent=MS.gene63459.t1
chr6.3 CDS 79388042 79388184 79388042 ID=cds.MS.gene63459.t1;Parent=MS.gene63459.t1
chr6.3 exon 79387642 79387711 79387642 ID=MS.gene63459.t1.exon7;Parent=MS.gene63459.t1
chr6.3 CDS 79387642 79387711 79387642 ID=cds.MS.gene63459.t1;Parent=MS.gene63459.t1
chr6.3 exon 79387073 79387168 79387073 ID=MS.gene63459.t1.exon8;Parent=MS.gene63459.t1
chr6.3 CDS 79387073 79387168 79387073 ID=cds.MS.gene63459.t1;Parent=MS.gene63459.t1
chr6.3 exon 79386854 79386943 79386854 ID=MS.gene63459.t1.exon9;Parent=MS.gene63459.t1
chr6.3 CDS 79386854 79386943 79386854 ID=cds.MS.gene63459.t1;Parent=MS.gene63459.t1
chr6.3 exon 79386675 79386728 79386675 ID=MS.gene63459.t1.exon10;Parent=MS.gene63459.t1
chr6.3 CDS 79386675 79386728 79386675 ID=cds.MS.gene63459.t1;Parent=MS.gene63459.t1
chr6.3 exon 79386422 79386545 79386422 ID=MS.gene63459.t1.exon11;Parent=MS.gene63459.t1
chr6.3 CDS 79386422 79386545 79386422 ID=cds.MS.gene63459.t1;Parent=MS.gene63459.t1
chr6.3 exon 79385832 79385956 79385832 ID=MS.gene63459.t1.exon12;Parent=MS.gene63459.t1
chr6.3 CDS 79385832 79385956 79385832 ID=cds.MS.gene63459.t1;Parent=MS.gene63459.t1
chr6.3 exon 79385631 79385753 79385631 ID=MS.gene63459.t1.exon13;Parent=MS.gene63459.t1
chr6.3 CDS 79385631 79385753 79385631 ID=cds.MS.gene63459.t1;Parent=MS.gene63459.t1
chr6.3 exon 79384799 79384852 79384799 ID=MS.gene63459.t1.exon14;Parent=MS.gene63459.t1
chr6.3 CDS 79384799 79384852 79384799 ID=cds.MS.gene63459.t1;Parent=MS.gene63459.t1
Gene Sequence

>MS.gene63459

ATGTGTGCGTAGTCTGTGTTTAAGTGCTTTAGACTTTTGAATGCTAAAAATTGAGACAAGTTAGATTGTGTATCAAGTTAAGATTTATAGTTTCATCTAATGTTTTCTTATATATGCAGTTGGAAATTCCTCGGTATCAACTGGAACAGCCGAGGATGACGTGTTGAAAGCGTTGTCTCAGATCATTGATCCAGACTTTGGAACAGATATTGTTACTTGCGGATTTGTGAAAGATTTGCAGATCGATAAAGCTCTAGGAGAGGTCTTAAAATCAAACGCCTCAAACTTTCGGCAACACGTGTGAATGACAATGTTCTTACAAGAAGTTTTTCCTTTGAATCGCAGGTGTCGTTTCGGTTAGAGCTCACTACACCAGCATGTCCGATCAAGGACGTGGTAAATGACACAATTGCCATTGTTTGAGCCATATCTGACGTAGGTTAGAGTGGTAGACTTTTGTTCTGTAAACTCATTACATATAGAAGGGATAATAAAAAATTAAAAATTGCATATATTTTCCATGATAAAGAAATGAATGTTTTGTAGTCGATTATGTATCTTTTCCAGTCTTGAGTTTCATGTAATTATGGGAAACTAAAAAATGATTATATATGCATATGACAGTTTGAGCAGCAGGCAAATGAGGTGGTGGCAGTGCTCCCTTGGGTCAAGAATGTCAATGTTACGATGTCTGCGCAGCCAGCAAAACCGTTATTCGCAGAGCAACTTCCAGCAGGTTTACAGACGATTTCAAATATTATCGCTGTATCCAGTTGCAAGGTGAATCTCCTCATCATATATTGGTCATATTAAGTCGTTTGCGATAATTTTGGCTGCTTTCTTGTTAATATTTTTTTTTTCTTCCATAAATAGTTAATCTAATTACCATGATTTACATTTCGTCTCATGAATCGTGATTGAATTTTGTCAAAAATAAAAATTTGCAGGGGGGTGTAGGAAAATCAACTGTAGCAGTAAACCTTGCTTATACTTTGGCTGATATGGGTGCTAGAGTTGGTATATTTGATGCTGATATTTATGGTCCAAGCTTACCAACTATGGTCTCTCCGGAAAATCGAATATTAGAAATGGTAACATATGATAAACCATGTGTTTTTAAATGTATAATATAGGGAAGTACAAAAAACATGATTGTTTGAGTGTTGCTGCAGAATCCAGAAAAGAAGACCATAATTCCAACTGAATACATGGGAGTCAAGTTGGTTTCTTTTGGATTTGCTGGACAAGGACGTGCAATTATGCGCGGCCCTATGGTTTCTGGAGTCACTAACCAACTTCTCACTACTACCGAGTGGTATGCATTTCTGAAAAACATAAAAAAAAAGATATGCTATGCATAGAATAGGGAAAAAGTTACATGCTATATTGCCTTAACAAATCATGTCATTTAAAAAGATTCTGCATGAGATTTATGTGTTATGTTTTATGTTATTCAAATTTATTGGTCCACCCTACCCTAGAGTATGTATTGAACTACCTACTTGATGCTTTTTAAATTAACCACATTTATATTTTTTTTGACGGAATTAACCACATTTATATAATAATCTTTACTTTAGTCCTTTCCAGAAAACCTAATAGGTTATGCTTGATATGTAGTCTTGATTTGGTTTACAAAATGTAGGGGCGAGCTTGATTACCTTGTTATCGACATGCCTCCGGGAACAGGAGACATTCAACTCACTTTATGCCAGGTTATAACTTACCATTCCTTTAGTTTGTTTCACATTGCATTTTAACTGTTGTGGTAGGCTGGAATTTCACTCGCTTGGTCACCCTTAAGCCAAGATCAGACCAGTCAATCGGGTCAGCTTGATCACCTTCGAGCTGAAATCAAGCCGAGAGCTTCTTTTTCCACCACACATGTGTCCGGAAGTATACTTCTGGATGGGAAAAAACTGTATTTTTATCCAGAAGTATACTTCTGGACGACACAAAAAATGTTTCTTTTGGAAGTATACTTCCGAAGTGGCTTTGGGGGCGGGAAAAAGAAGCTCCCATGAAGCCTTTCTGATAACTTGGGCTCATATTGAGCTGAAATTTAGGCCAGACTGAAAACTTTGGGCTGAAATATGGCCACCGCAATCAAATTTTACGTGTGAAGCCTATAGTGTAATTACTTTAACTACTTGCAATTCATTTTGACTTTGATTGTGTATTCTTATAGATAGTCCCATTAACTGCTGCTGTAATTGTTACCACTCCTCAAAAACTATCGTTCATCGATGTTGCAAAAGGAGTTCGGATGTTTTCAAAGCTTAAGGTGATTCTTCTACATATCAAAGACATAACTATTACATTTTGTTTTTCCAATCTCATGCTTCTAACCAACACATACTTGATACTATTCACATTTAATACTTATTTATATTATTTTGTGTTTATGTAAAAGGTACCTTGTGTAGCTGTTGTCGAGAACATGTGTCATTTTGATGCCGATGGAAAAAGATACTATCCATTTGGTAGAGGTTCAGGATCTCAGGCATGGATAACGTTTCTGAATTTTAACTTTTTGTTTTCTTAATCATATTTATTATATGATGCTTAATATAAAAACAATTATGTACTTTCTGTGACACATGTTTGATTGTTCGATCATATTTGCAGGTTGTTCAGCAGTTTGGAATACCGCATCTATTTGATCTCCCTATTAGACCGACTGTATGTCTCGTGTTACTTCATCTATTATACTCAAACCTTTAGTTTATTCTCTTCTCTCGATGTTTTTTGCTTGTTTCTATATTGCTAAATGCGAACTAAGATTTGAGTTTATTTGAACAATTGTCACAGCTATCCGCTTCTGGAGATAGTGGAATGCCTGAAGTGGTGGCAGATCCTCAAGGCGATGTTTCCAAGATATTCCAAAATCTAGGAGTATGTGTTGTGCAGCAGTGTGCTAAAATACGCCAACAAGGTATTCTATTCCTGCTTGATGACATTTGACAAGAAAATGCATACTCAAGCTAGATGTTCACTGAATGTAACTAGTTTTAAAGTTTATAATTCGTCAATCACAAAATCACTGCTCAATTTTCGGTAGTTGAAATGTTTACTTATTTTTCTCTTACTAATAAATCTTATCTTATGAATGTTCATTCTCGCTCTCTTCTATAGGGTTTTCCGACAAGTAGACCGCTTTTCCATTAAGTATATATGCAAAACTAAGTAGTCTGTATAACCCTGAATATTGCATAATAGAAAAACTGCGGCAGTCACTTTGTTGTTGGAGTTGTAGGCACAACTGGTCGATCATTGTGTTCTTGTATGTGTTTATTGATCTAATACCTAATGCATCCGAATACAAATTTTTTCACTTTCTTCTAGCATTCATGCTTTTTCTAAGATTGATATTTTTTTTTTTTTGTTATTTTCAATTCAGTTTCAACAGCTGTGACCTACGATAAATCAGTCAAGGCAATTAGAGTAAAAGTACCAGATTCAGATGAAGAATTCTTTCTGCATCCTGCAACAGTGAGACGGAATGATCGGTCTGCTCAGAGTGTGGTATGTTGATATTTAAGAAAAATAAAAATAAAAATGCTGTTTATCCATCTCATTTGAAGCTAACTTTATTTTAAACAGGATGAATGGACGGGGGAGCAGAAATTGCAGTATACCGATATTCCTGATTACATTGAACCTGAAGAAATTCGGCCAATGGGAAATTATGCCGTTTCAATAACATGGCCTGATGGGTTTAGTCAGGTAATGTACACACATCAGATTGGACAGTTCCATTGAAAAAGAAAGCTTTAAACTGTATATTATTAGCATTAGCATATCAATTGTCTCGGTTAGAAATATGGTTTGGACTAAGCTTTATGTAAAGAGAATAGCCTTCAAACCTAATATATGTGCTTGACCAAACTTCAGAACATCAAATGGTGTTCGGCACTGTCTAGCGTGTACGCTGTTCAATAAAGGGATAAACTTTTCCACCCCCTGCATTTTTAAGACATCAAACATGGTTCCATAACTTTATTTTCGGACCATATAATTTATCCGAAAGTGTACTTCCAGATGATACAAAAATTGTATTTTTTCCGCGGATGTGCATATCTGACGTCATGTGAGTAGTTCGGGAAAGTTCCTTCTGTTAAAAACGGTACACCACAGCCGAGTCGAGCCAAGGATGAATGAGGCCTAAAGCAATCTTTAAAGGGCCATTTTGCTTTAGGTTCAACTTTTTAGCCGACGCATGTGGTCTTTTTGCTTTGTAAAATGAGTAGCAATTACAATTTTTTTCCCTGGTGGACCTAAAGTTCGGGTTTTAGTTGGTTTATCCTTGGACCGGATCTGTACTGTAGATCCCCATTTGTTGACTGCTGATTTATCATCTTAAAAAAATATTAATGATAGCGATTTACCTTACTAACTTATAATCATAATCATTCCTAATTTTTTATTATAATACGTTTTAATTGATTTGTGCTATGTAATTATGCTATAAAGTTGATTTTGACATTTTTACCATATGATGCAGATTGCTCCTTATGATCAACTGCAGACAATGGAACGGTTAGTTGGTGTTTCTTGA

Protein sequence

>MS.gene63459.t1

MFGNSSVSTGTAEDDVLKALSQIIDPDFGTDIVTCGFVKDLQIDKALGEVSFRLELTTPACPIKDVFEQQANEVVAVLPWVKNVNVTMSAQPAKPLFAEQLPAGLQTISNIIAVSSCKGGVGKSTVAVNLAYTLADMGARVGIFDADIYGPSLPTMVSPENRILEMNPEKKTIIPTEYMGVKLVSFGFAGQGRAIMRGPMVSGVTNQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQIVPLTAAVIVTTPQKLSFIDVAKGVRMFSKLKVPCVAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVVADPQGDVSKIFQNLGVCVVQQCAKIRQQVSTAVTYDKSVKAIRVKVPDSDEEFFLHPATVRRNDRSAQSVDEWTGEQKLQYTDIPDYIEPEEIRPMGNYAVSITWPDGFSQIAPYDQLQTMERLVGVS