AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33834

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33834.t1 MTR_4g088920 94.633 913 49 0 1 913 1 913 0.0 1791
MS.gene33834.t1 MTR_5g068600 30.721 804 465 23 33 791 43 799 4.41e-85 290
MS.gene33834.t1 MTR_5g068600 31.454 674 384 18 151 789 67 697 1.17e-77 267
MS.gene33834.t1 MTR_1g045670 30.049 203 130 3 414 605 743 944 8.65e-18 89.4
MS.gene33834.t1 MTR_1g100683 33.858 127 82 2 428 553 799 924 6.45e-15 80.1
MS.gene33834.t1 MTR_1g100683 33.858 127 82 2 428 553 799 924 6.45e-15 80.1
MS.gene33834.t1 MTR_7g109470 25.763 295 169 10 403 665 1003 1279 8.56e-15 79.7
MS.gene33834.t1 MTR_6g086270 26.230 244 148 7 413 630 878 1115 1.83e-13 75.5
MS.gene33834.t1 MTR_4g111945 22.261 283 187 7 414 664 649 930 4.28e-13 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33834.t1 AT1G65070 53.639 893 351 12 28 913 40 876 0.0 902
MS.gene33834.t1 AT1G65070 53.600 875 343 12 28 895 40 858 0.0 878
MS.gene33834.t1 AT1G65070 55.311 772 293 8 28 794 40 764 0.0 816
MS.gene33834.t1 AT1G65070 56.962 632 223 7 28 655 40 626 0.0 692
MS.gene33834.t1 AT5G54090 30.235 807 471 24 20 784 34 790 7.73e-83 284
MS.gene33834.t1 AT3G24320 28.218 202 133 3 415 605 498 698 3.70e-17 87.0
MS.gene33834.t1 AT3G24320 28.218 202 133 3 415 605 743 943 5.29e-17 87.0
MS.gene33834.t1 AT4G25540 32.624 141 92 3 414 552 799 938 1.33e-14 79.0
MS.gene33834.t1 AT4G02070 24.167 360 204 12 203 550 897 1199 1.75e-12 72.4
MS.gene33834.t1 AT4G02070 24.167 360 204 12 203 550 900 1202 1.75e-12 72.4
MS.gene33834.t1 AT3G24495 26.577 222 141 6 412 612 826 1046 3.87e-12 70.9
MS.gene33834.t1 AT3G18524 29.252 147 99 4 414 557 648 792 7.03e-12 70.1
MS.gene33834.t1 AT4G17380 23.651 241 155 7 423 657 545 762 1.24e-11 69.3
MS.gene33834.t1 AT4G17380 28.462 130 92 1 423 552 545 673 1.25e-11 68.9

Find 218 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATAATTCATTGGACTTTC+TGG 0.056329 4.3:-24091885 None:intergenic
CTCTGGAGCAACATACTTTA+TGG 0.200265 4.3:+24088363 MS.gene33834:CDS
CTCCGCTCTTGCTGCTGTTC+TGG 0.212629 4.3:-24089588 None:intergenic
AAACCTTGCAACCAACTTAT+AGG 0.224407 4.3:+24089457 MS.gene33834:CDS
GCAAAATTGTAATTTCCTAA+TGG 0.255352 4.3:+24088072 MS.gene33834:CDS
CGAAAAGCAACTAAAAGATT+TGG 0.258652 4.3:+24090293 MS.gene33834:CDS
ACATCATATACTCCACAATT+TGG 0.262844 4.3:+24090426 MS.gene33834:CDS
CTTGTTCTCATTGATGAAAT+TGG 0.280062 4.3:+24089270 MS.gene33834:CDS
ATAGTACCTAAACTGAAAAT+TGG 0.281975 4.3:-24088589 None:intergenic
CCAGAAAGTCCAATGAATTA+TGG 0.282003 4.3:+24091885 MS.gene33834:CDS
GAAGAACACTCGCTGCTTCC+AGG 0.290821 4.3:+24087160 MS.gene33834:CDS
TTGCATAGATTGCAATCTTT+TGG 0.292449 4.3:+24088117 MS.gene33834:CDS
CTAGAATGTGCGTGGGCATC+AGG 0.296994 4.3:+24088290 MS.gene33834:CDS
ATTCTCTCCGTTGCTGTTTC+CGG 0.310263 4.3:+24087102 MS.gene33834:CDS
GACCTTATCCTTGCAGATAT+TGG 0.312231 4.3:+24089000 MS.gene33834:CDS
AGCAATGGTGATATTTATTA+TGG 0.313667 4.3:+24091663 MS.gene33834:CDS
CAAAATTGTAATTTCCTAAT+GGG 0.314744 4.3:+24088073 MS.gene33834:CDS
TTGCATCCTCTAACTCTTGT+TGG 0.316694 4.3:-24090239 None:intergenic
TTCAAATCTATTGCTTCTTT+CGG 0.318025 4.3:-24088388 None:intergenic
AGGTCAAACCAAGGAAGTTT+TGG 0.325111 4.3:-24088982 None:intergenic
AACCTTGCAACCAACTTATA+GGG 0.326348 4.3:+24089458 MS.gene33834:CDS
TCATTAGATCAGAACGAAAA+AGG 0.327607 4.3:+24088173 MS.gene33834:CDS
CTTGGCAGGCAGATGCATTC+CGG 0.328681 4.3:-24088953 None:intergenic
AGGTTTGATCGAGAAGCTTT+TGG 0.334460 4.3:-24087017 None:intergenic
AGGGATTGAGGGTTTGTTGA+TGG 0.339868 4.3:-24086812 None:intergenic
TTCTTAGATGTTTGCACCGC+TGG 0.347990 4.3:-24091687 None:intergenic
GATCGACGCTTAGTAATAAA+TGG 0.355822 4.3:-24088268 None:intergenic
ACGGGCGCTGTTGGCGGCGG+AGG 0.366945 4.3:-24086965 None:intergenic
GGGATTGAGGGTTTGTTGAT+GGG 0.370731 4.3:-24086811 None:intergenic
GAAAAGCAACTAAAAGATTT+GGG 0.371137 4.3:+24090294 MS.gene33834:CDS
AGCATTCACTTCCACTTCAA+TGG 0.372505 4.3:+24086939 MS.gene33834:CDS
ATCAGAGATAAAATATTTGT+TGG 0.373046 4.3:+24088498 MS.gene33834:CDS
AAGGAGAAGCGAGGGATTGA+GGG 0.374390 4.3:-24086823 None:intergenic
TCTGAGTTGGGTAATGGAAA+TGG 0.381561 4.3:+24088766 MS.gene33834:CDS
GAGTACGTCCGACGGGTAAA+CGG 0.383430 4.3:-24086984 None:intergenic
ATTACAAAGAGAACTGAATA+TGG 0.386756 4.3:-24091783 None:intergenic
AACTAGTTCTCCCACTCATC+AGG 0.387558 4.3:+24090605 MS.gene33834:CDS
CAAGGTCTTCTGCCTCCCTT+TGG 0.387704 4.3:-24090173 None:intergenic
AGGGTTCTCTGGGGATGTAT+TGG 0.387828 4.3:+24089477 MS.gene33834:CDS
GTTCTGAATGCCAGCAGCTC+TGG 0.388227 4.3:+24088346 MS.gene33834:CDS
AACCAACTTATAGGGTTCTC+TGG 0.388468 4.3:+24089466 MS.gene33834:CDS
GTAATACATGGGATGGGCAC+TGG 0.389103 4.3:+24091801 MS.gene33834:CDS
TTGTAATTTCCTAATGGGCT+TGG 0.389277 4.3:+24088078 MS.gene33834:CDS
GAAACAATCTTGGTACAGTA+TGG 0.389406 4.3:+24090516 MS.gene33834:CDS
TTAAGCATAGCGCAATCTAT+TGG 0.392431 4.3:+24089513 MS.gene33834:CDS
AATTCTTCTGAGTTGGGTAA+TGG 0.397648 4.3:+24088760 MS.gene33834:CDS
TCCTAATGGGCTTGGAGCGC+AGG 0.398236 4.3:+24088086 MS.gene33834:CDS
GAAGGAGAAGCGAGGGATTG+AGG 0.404110 4.3:-24086824 None:intergenic
AATGCTCTATCAGTCATTAC+AGG 0.405453 4.3:+24089614 MS.gene33834:CDS
GTTCATAATTTCTGCATGAA+TGG 0.405550 4.3:-24089679 None:intergenic
CAAGTCCGTGTGAAGGGATT+GGG 0.412733 4.3:+24090453 MS.gene33834:CDS
GTCATCTCAGGACCTAATAC+TGG 0.416951 4.3:+24088877 MS.gene33834:CDS
GTTGACTTCAAAATTAGATC+TGG 0.420665 4.3:+24088841 MS.gene33834:CDS
TGCTGATCTAAGTACTTTGA+AGG 0.425952 4.3:+24089389 MS.gene33834:CDS
TCAGTTCTCTTTGTAATACA+TGG 0.427691 4.3:+24091789 MS.gene33834:CDS
ATTTGAACAACATGGAAGTT+AGG 0.428354 4.3:+24088404 MS.gene33834:CDS
GGGTAAACGGGCGCTGTTGG+CGG 0.429602 4.3:-24086971 None:intergenic
ACTAGAGTGGTGGTCATCTC+AGG 0.432380 4.3:+24088865 MS.gene33834:CDS
TAATACATGGGATGGGCACT+GGG 0.432402 4.3:+24091802 MS.gene33834:CDS
GTCTGGAAATTCTTCTGAGT+TGG 0.433211 4.3:+24088753 MS.gene33834:CDS
GTAGCAGAAGCAAGGTTTGA+AGG 0.434423 4.3:-24086842 None:intergenic
CTTCGAACGGTGCAAAGCTC+GGG 0.437748 4.3:-24087141 None:intergenic
GCATTCAGAACTATACCTTC+TGG 0.438902 4.3:-24088334 None:intergenic
TCCTGCGCTCCAAGCCCATT+AGG 0.439036 4.3:-24088087 None:intergenic
TCTGGAAATTCTTCTGAGTT+GGG 0.439306 4.3:+24088754 MS.gene33834:CDS
GCCTATGCTCAATGGATGAA+TGG 0.441853 4.3:+24088559 MS.gene33834:CDS
GCAAGTCCGTGTGAAGGGAT+TGG 0.444020 4.3:+24090452 MS.gene33834:CDS
TGAGTGGGAGAACTAGTTGC+AGG 0.444981 4.3:-24090600 None:intergenic
CTCCAATATCTGCAAGGATA+AGG 0.447195 4.3:-24089002 None:intergenic
ACGGGTCCAACAAGAGTTAG+AGG 0.448882 4.3:+24090233 MS.gene33834:CDS
TGCTGAGAGTTGCTTGCATA+TGG 0.449310 4.3:-24086920 None:intergenic
CCTATGCTCAATGGATGAAT+GGG 0.451608 4.3:+24088560 MS.gene33834:CDS
ACAGTACATCCATAATTCAT+TGG 0.451719 4.3:-24091894 None:intergenic
TATGGCAAAGGAAGCTCAAC+GGG 0.452879 4.3:+24090215 MS.gene33834:CDS
AGAAAAGTCCAAAACTTCCT+TGG 0.454680 4.3:+24088974 MS.gene33834:CDS
GCATTCACTTCCACTTCAAT+GGG 0.457389 4.3:+24086940 MS.gene33834:CDS
TAAACGGGCGCTGTTGGCGG+CGG 0.458599 4.3:-24086968 None:intergenic
AATCCTGGACTCTTTATTGA+AGG 0.459366 4.3:+24088204 MS.gene33834:CDS
TAGACGTGAAACGATGCTTA+TGG 0.459950 4.3:+24090197 MS.gene33834:CDS
CTTTAATTATTGAATTGAGT+TGG 0.464631 4.3:-24090323 None:intergenic
GTTAAAGGCTCAAGCTGAAA+AGG 0.465641 4.3:+24089650 MS.gene33834:CDS
TTCAAACTCTGAAGCGGCCG+AGG 0.466077 4.3:+24088429 MS.gene33834:CDS
ACCAACTTATAGGGTTCTCT+GGG 0.467907 4.3:+24089467 MS.gene33834:CDS
TTCAATGAAAACGTTGGGCC+TGG 0.468162 4.3:+24088912 MS.gene33834:CDS
GGATTGAGGGTTTGTTGATG+GGG 0.474954 4.3:-24086810 None:intergenic
GCAGGATTCTTTGCACTTGG+TGG 0.477236 4.3:-24090582 None:intergenic
AGTACGTCCGACGGGTAAAC+GGG 0.478043 4.3:-24086983 None:intergenic
CCGCAGATATTGTAAGATAC+TGG 0.478412 4.3:-24089331 None:intergenic
GTATGTTGCTCCAGAGCTGC+TGG 0.478675 4.3:-24088356 None:intergenic
GCCACAGTGGTAGAATTGCC+TGG 0.478854 4.3:+24090486 MS.gene33834:CDS
CAATGACATTGCGGTCGTGC+AGG 0.479424 4.3:+24088639 MS.gene33834:CDS
CTCATTGATGAAATTGGTAG+TGG 0.480474 4.3:+24089276 MS.gene33834:CDS
AGAGGATGCAAAATCTCAAA+TGG 0.483805 4.3:+24090251 MS.gene33834:CDS
ATCTAAGTACTTTGAAGGAA+AGG 0.486923 4.3:+24089394 MS.gene33834:CDS
GACGGGTAAACGGGCGCTGT+TGG 0.491238 4.3:-24086974 None:intergenic
TCTAAGTACTTTGAAGGAAA+GGG 0.492540 4.3:+24089395 MS.gene33834:CDS
GATAATGTCACACTAAGGTC+TGG 0.494415 4.3:+24088736 MS.gene33834:CDS
ACTGCTTCAATGAAAACGTT+GGG 0.494465 4.3:+24088907 MS.gene33834:CDS
CAAGAGCTGCCTATGCTCAA+TGG 0.496220 4.3:+24088551 MS.gene33834:CDS
TCTTCGAACGGTGCAAAGCT+CGG 0.496479 4.3:-24087142 None:intergenic
GTTGCAGGATTCTTTGCACT+TGG 0.499764 4.3:-24090585 None:intergenic
GATGGGGATGAAGAGGTTGC+AGG 0.501851 4.3:-24086794 None:intergenic
CTATTGTAGAAACCACTGAA+TGG 0.501864 4.3:+24091609 MS.gene33834:intron
GTTTGATAGTTTGAAACACT+TGG 0.502558 4.3:+24087188 MS.gene33834:CDS
CGATTTAACAGTAAATATTG+AGG 0.507073 4.3:+24088666 MS.gene33834:CDS
ACCTGCTTTCCCTGATGAGT+GGG 0.510949 4.3:-24090615 None:intergenic
TCTCTTTGTAATACATGGGA+TGG 0.512107 4.3:+24091794 MS.gene33834:CDS
TATGCGGCATCCATTACTCC+TGG 0.512692 4.3:+24088690 MS.gene33834:CDS
CGCTGATTGTCATCTCAAGA+TGG 0.514272 4.3:-24091752 None:intergenic
ACCACTGAATGGAAAATCCC+GGG 0.517125 4.3:+24091620 MS.gene33834:CDS
ATGCGATCAGCGCCACTGAT+GGG 0.523837 4.3:-24090402 None:intergenic
AACCCTATAAGTTGGTTGCA+AGG 0.524314 4.3:-24089460 None:intergenic
GCATCGTTTCACGTCTATCA+AGG 0.526470 4.3:-24090191 None:intergenic
CCACAGTGGTAGAATTGCCT+GGG 0.526487 4.3:+24090487 MS.gene33834:CDS
CAAACTATCAAACAATTCCC+TGG 0.528874 4.3:-24087178 None:intergenic
TCCCACTCATCAGGGAAAGC+AGG 0.529174 4.3:+24090614 MS.gene33834:CDS
TTCAGTTTAGGTACTATTGG+AGG 0.531767 4.3:+24088595 MS.gene33834:CDS
GTTCTGATCTAATGATCTCC+AGG 0.531958 4.3:-24088165 None:intergenic
ACTCAAAATTGCTCTTTCCT+CGG 0.533024 4.3:-24088446 None:intergenic
AACCACTGAATGGAAAATCC+CGG 0.535658 4.3:+24091619 MS.gene33834:CDS
CTTCCTTCAATAAAGAGTCC+AGG 0.535939 4.3:-24088207 None:intergenic
CAGTTCTCTTTGTAATACAT+GGG 0.538091 4.3:+24091790 MS.gene33834:CDS
TGGGCATCAGGGCTTCGTAT+AGG 0.539792 4.3:+24088302 MS.gene33834:CDS
GTTTGTTGATGGGGATGAAG+AGG 0.545453 4.3:-24086801 None:intergenic
TAATTGACCATGCACAAAAG+TGG 0.545555 4.3:+24089550 MS.gene33834:CDS
GGATTGGACTGAGTTGGACT+CGG 0.547239 4.3:-24086869 None:intergenic
GGAGAGCAAGTCCGTGTGAA+GGG 0.549755 4.3:+24090447 MS.gene33834:CDS
CCCCAGAGAACCCTATAAGT+TGG 0.550494 4.3:-24089468 None:intergenic
AAGGTTTGAAGGAGAAGCGA+GGG 0.550811 4.3:-24086831 None:intergenic
TTGTTGTTGAGGAATGAGTC+TGG 0.550825 4.3:-24087046 None:intergenic
CGGACTTGCTCTCCAAATTG+TGG 0.554429 4.3:-24090438 None:intergenic
TGGGGATGATGAAACAATCT+TGG 0.554483 4.3:+24090506 MS.gene33834:CDS
GTTCATCTCTAAGTTACCCC+GGG 0.556248 4.3:-24091637 None:intergenic
TCTGCGGGAACATGTTAACT+TGG 0.556527 4.3:+24089347 MS.gene33834:CDS
GTCTGTTGGAGTACGTCCGA+CGG 0.557543 4.3:-24086992 None:intergenic
AGAGACGACTCCAGGAGTAA+TGG 0.558135 4.3:-24088700 None:intergenic
AAGAACACTCGCTGCTTCCA+GGG 0.558472 4.3:+24087161 MS.gene33834:CDS
AACCAGAACAGCAGCAAGAG+CGG 0.560885 4.3:+24089586 MS.gene33834:CDS
AGGTTGCAGGTGAGTTGCAT+CGG 0.562147 4.3:-24086781 None:intergenic
GATTTAACAGTAAATATTGA+GGG 0.563255 4.3:+24088667 MS.gene33834:CDS
TATAGGTATTTGCTTCCAGA+AGG 0.564358 4.3:+24088319 MS.gene33834:CDS
TGCAGATATTGGAGATCACC+AGG 0.564613 4.3:+24089011 MS.gene33834:CDS
TCTGTTGGAGTACGTCCGAC+GGG 0.568179 4.3:-24086991 None:intergenic
TGATAGAGCAAGTGAAGACC+TGG 0.568238 4.3:+24088147 MS.gene33834:CDS
CTCTTTGTAATACATGGGAT+GGG 0.569356 4.3:+24091795 MS.gene33834:CDS
AGGTTGCAATTCTGTTGAAG+AGG 0.570911 4.3:+24088615 MS.gene33834:CDS
GCATCACTTATGTCAAAAGC+CGG 0.571118 4.3:+24088934 MS.gene33834:CDS
AACTGATCCTTCAGAAGGTG+TGG 0.571658 4.3:+24089299 MS.gene33834:CDS
CAGTATCTTACAATATCTGC+GGG 0.572845 4.3:+24089332 MS.gene33834:CDS
ATAGCCTCAAAACTCTCGAA+TGG 0.578502 4.3:+24086893 MS.gene33834:CDS
AGGAATGAGTCTGGCAGCGG+AGG 0.579503 4.3:-24087037 None:intergenic
TTCCTCCCAATCCCTTCACA+CGG 0.581458 4.3:-24090458 None:intergenic
GCCACTGATGGGAGAACCAA+CGG 0.582829 4.3:-24090391 None:intergenic
AAGATTGTTTCATCATCCCC+AGG 0.584283 4.3:-24090504 None:intergenic
AACTGCTTCAATGAAAACGT+TGG 0.585712 4.3:+24088906 MS.gene33834:CDS
TGGAGAGCAAGTCCGTGTGA+AGG 0.586036 4.3:+24090446 MS.gene33834:CDS
TGAAACGATGCTTATGGCAA+AGG 0.587621 4.3:+24090203 MS.gene33834:CDS
TTAGAGATGAACAGCAGCAA+TGG 0.589819 4.3:+24091648 MS.gene33834:CDS
TGTTCATCTCTAAGTTACCC+CGG 0.590270 4.3:-24091638 None:intergenic
GCTATCGGATTGGACTGAGT+TGG 0.590319 4.3:-24086875 None:intergenic
ACTAGTTCTCCCACTCATCA+GGG 0.590763 4.3:+24090606 MS.gene33834:CDS
TTGAGGAATGAGTCTGGCAG+CGG 0.591996 4.3:-24087040 None:intergenic
GCCGTTGGTTCTCCCATCAG+TGG 0.592897 4.3:+24090390 MS.gene33834:CDS
TTTCAGATAATGTCACACTA+AGG 0.593354 4.3:+24088731 MS.gene33834:CDS
TACCTGCTTTCCCTGATGAG+TGG 0.594282 4.3:-24090616 None:intergenic
TAGAATGTGCGTGGGCATCA+GGG 0.594705 4.3:+24088291 MS.gene33834:CDS
GGCGGAGGAGCCCATTGAAG+TGG 0.595273 4.3:-24086950 None:intergenic
AATGCGATCAGCGCCACTGA+TGG 0.596091 4.3:-24090403 None:intergenic
GCGTCGATCTAGAATGTGCG+TGG 0.598379 4.3:+24088282 MS.gene33834:CDS
AATTGACCATGCACAAAAGT+GGG 0.600519 4.3:+24089551 MS.gene33834:CDS
TAGGCTTTCAAACTCTGAAG+CGG 0.601365 4.3:+24088423 MS.gene33834:CDS
ATCTCAGGACCTAATACTGG+AGG 0.603222 4.3:+24088880 MS.gene33834:CDS
GAAAGAGCCACACCTTCTGA+AGG 0.603440 4.3:-24089306 None:intergenic
CTGTATCTAATCATTCACAC+AGG 0.610846 4.3:+24087214 MS.gene33834:CDS
AGCAATAGATTTGAACAACA+TGG 0.612310 4.3:+24088396 MS.gene33834:CDS
GTCCGTGTGAAGGGATTGGG+AGG 0.612668 4.3:+24090456 MS.gene33834:CDS
CCAGTATCTTACAATATCTG+CGG 0.612724 4.3:+24089331 MS.gene33834:CDS
TCGGTTGAGTAGCAGAAGCA+AGG 0.613416 4.3:-24086850 None:intergenic
GGATCTACGAGGTATGCGAC+TGG 0.616506 4.3:+24091716 MS.gene33834:CDS
GCTTCTAAAAGCGCGTCACA+AGG 0.619119 4.3:+24088796 MS.gene33834:CDS
AATTAGATCTGGAACTAGAG+TGG 0.621351 4.3:+24088852 MS.gene33834:CDS
AACAGCGCCCGTTTACCCGT+CGG 0.621694 4.3:+24086976 MS.gene33834:CDS
CCCATTCATCCATTGAGCAT+AGG 0.623957 4.3:-24088560 None:intergenic
AAAGCTCATACTCCTGCCGT+TGG 0.625973 4.3:+24090375 MS.gene33834:CDS
CAGTAAATATTGAGGGTATG+CGG 0.626418 4.3:+24088674 MS.gene33834:CDS
TTATGGCAAAGGAAGCTCAA+CGG 0.627066 4.3:+24090214 MS.gene33834:CDS
GGGAATAGTCAACAAACTAC+CGG 0.627765 4.3:-24087121 None:intergenic
AGTGGAACTGATCCTTCAGA+AGG 0.631076 4.3:+24089294 MS.gene33834:CDS
CAAGGTTTGAAGGAGAAGCG+AGG 0.631968 4.3:-24086832 None:intergenic
GAAAAGTCGAGTTGTTGTTG+AGG 0.632731 4.3:-24087057 None:intergenic
AGCAGCGAGTGTTCTTCGAA+CGG 0.642225 4.3:-24087154 None:intergenic
CTGATGGGAGAACCAACGGC+AGG 0.643450 4.3:-24090387 None:intergenic
GGTGATCTCCAATATCTGCA+AGG 0.644964 4.3:-24089008 None:intergenic
TTCCAGTGAAAATTCCATTG+CGG 0.649211 4.3:-24089436 None:intergenic
CGTCGATCTAGAATGTGCGT+GGG 0.653354 4.3:+24088283 MS.gene33834:CDS
TGACCATGCACAAAAGTGGG+TGG 0.654188 4.3:+24089554 MS.gene33834:CDS
GGGTAATGGAAATGGAACAA+TGG 0.655085 4.3:+24088774 MS.gene33834:CDS
CAAACTACCGGAAACAGCAA+CGG 0.655170 4.3:-24087109 None:intergenic
GAACAGCAGCAAGAGCGGAG+AGG 0.655853 4.3:+24089591 MS.gene33834:CDS
GCAAACATCTAAGAATACTG+TGG 0.660918 4.3:+24091695 MS.gene33834:CDS
GCTCTATCAGTCATTACAGG+AGG 0.665919 4.3:+24089617 MS.gene33834:CDS
TCTCAGGACCTAATACTGGA+GGG 0.667789 4.3:+24088881 MS.gene33834:CDS
CTGTTGCACGTGTTAAGTGA+AGG 0.669861 4.3:+24091913 MS.gene33834:CDS
TAGATCTGGAACTAGAGTGG+TGG 0.673809 4.3:+24088855 MS.gene33834:CDS
ACTTAGATCAGCATAATGAG+TGG 0.681388 4.3:-24089379 None:intergenic
CTATGCTCAATGGATGAATG+GGG 0.683732 4.3:+24088561 MS.gene33834:CDS
CACAGTGGTAGAATTGCCTG+GGG 0.691114 4.3:+24090488 MS.gene33834:CDS
TGATATTTATTATGGTCCAG+CGG 0.693969 4.3:+24091671 MS.gene33834:CDS
AATTATGAACGTGTACTCTG+AGG 0.698166 4.3:+24089692 MS.gene33834:CDS
AATACATGGGATGGGCACTG+GGG 0.701367 4.3:+24091803 MS.gene33834:CDS
TGAAGAGGACAATGACATTG+CGG 0.707528 4.3:+24088630 MS.gene33834:CDS
CCCAGGCAATTCTACCACTG+TGG 0.714085 4.3:-24090487 None:intergenic
GGGAGGAAAATTAGCCACAG+TGG 0.714859 4.3:+24090473 MS.gene33834:CDS
GCAAGGATAAGGTCAAACCA+AGG 0.720894 4.3:-24088991 None:intergenic
CCACTGAATGGAAAATCCCG+GGG 0.744139 4.3:+24091621 MS.gene33834:CDS
AAGAATACTGTGGATCTACG+AGG 0.748281 4.3:+24091705 MS.gene33834:CDS
GGTTCAAAATGAGTGACACG+AGG 0.753470 4.3:-24091864 None:intergenic
CCAACTTATAGGGTTCTCTG+GGG 0.797932 4.3:+24089468 MS.gene33834:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAGAATTGATATATTT+TGG + chr4.3:24091052-24091071 MS.gene33834:intron 10.0%
!! AAATACCTTTCAATAAAATT+TGG - chr4.3:24090988-24091007 None:intergenic 15.0%
!! AATTTCAGATAAACTTTAAA+AGG - chr4.3:24089810-24089829 None:intergenic 15.0%
!! ATAATGATTATCATACTATA+TGG - chr4.3:24089783-24089802 None:intergenic 15.0%
!! ATATAAGTAAAAGAAGTTAT+TGG + chr4.3:24090952-24090971 MS.gene33834:intron 15.0%
!! ATATATATATATATGTCATG+TGG + chr4.3:24089121-24089140 MS.gene33834:intron 15.0%
!!! AAGGTATTTTATATTTAATC+TGG + chr4.3:24090999-24091018 MS.gene33834:intron 15.0%
!!! AATTTTGTCTAAATCAAATT+AGG - chr4.3:24091472-24091491 None:intergenic 15.0%
!!! ATTTCAGATAAACTTTAAAA+GGG - chr4.3:24089809-24089828 None:intergenic 15.0%
!!! TTACTATTTTAGTAAGAATT+GGG + chr4.3:24091169-24091188 MS.gene33834:intron 15.0%
!! AAATAAAAGGAAACAGTTTA+TGG + chr4.3:24087434-24087453 MS.gene33834:intron 20.0%
!! AATAAAAGGAAACAGTTTAT+GGG + chr4.3:24087435-24087454 MS.gene33834:intron 20.0%
!! ATATTTAAATTAACAGCTCT+TGG - chr4.3:24089960-24089979 None:intergenic 20.0%
!! ATCAGAGATAAAATATTTGT+TGG + chr4.3:24088498-24088517 MS.gene33834:CDS 20.0%
!! CAAAATTGTAATTTCCTAAT+GGG + chr4.3:24088073-24088092 MS.gene33834:CDS 20.0%
!! CTTTAATTATTGAATTGAGT+TGG - chr4.3:24090326-24090345 None:intergenic 20.0%
!! GATTTAACAGTAAATATTGA+GGG + chr4.3:24088667-24088686 MS.gene33834:CDS 20.0%
!! TTGCAAAATAACTTTCTTAA+TGG - chr4.3:24090732-24090751 None:intergenic 20.0%
!!! ATTATCTAAAATATTCTTCG+TGG + chr4.3:24090918-24090937 MS.gene33834:intron 20.0%
!!! ATTTTTGTGAACTTTTACTT+TGG - chr4.3:24087998-24088017 None:intergenic 20.0%
!!! CATTTTTTCTTTTGAAGTAA+TGG + chr4.3:24091022-24091041 MS.gene33834:intron 20.0%
!!! CTTATTATATTTGAAACTAG+AGG - chr4.3:24090819-24090838 None:intergenic 20.0%
!!! GAAATCCAAATTTTATTGAA+AGG + chr4.3:24090980-24090999 MS.gene33834:intron 20.0%
!!! GTTACTATTTTAGTAAGAAT+TGG + chr4.3:24091168-24091187 MS.gene33834:intron 20.0%
!!! TACTATTTTAGTAAGAATTG+GGG + chr4.3:24091170-24091189 MS.gene33834:intron 20.0%
!!! TTAAGAAGCCAATTTTAAAA+AGG - chr4.3:24091449-24091468 None:intergenic 20.0%
!!! TTTTACTTTGGATTTGTAAA+AGG - chr4.3:24087986-24088005 None:intergenic 20.0%
! AAAAAAGTTCAGATATTACC+TGG - chr4.3:24089032-24089051 None:intergenic 25.0%
! AAATAGTAACAAATACTCTC+CGG - chr4.3:24091158-24091177 None:intergenic 25.0%
! AGCAATGGTGATATTTATTA+TGG + chr4.3:24091663-24091682 MS.gene33834:CDS 25.0%
! ATAGTACCTAAACTGAAAAT+TGG - chr4.3:24088592-24088611 None:intergenic 25.0%
! ATTAATAGATATCCAATCCT+CGG + chr4.3:24089928-24089947 MS.gene33834:intron 25.0%
! ATTACAAAGAGAACTGAATA+TGG - chr4.3:24091786-24091805 None:intergenic 25.0%
! ATTCAATGTGCCTATATTAT+AGG - chr4.3:24091399-24091418 None:intergenic 25.0%
! CAATTTCCAAATATGATGTT+AGG - chr4.3:24091362-24091381 None:intergenic 25.0%
! CGATTTAACAGTAAATATTG+AGG + chr4.3:24088666-24088685 MS.gene33834:CDS 25.0%
! CTAACATCATATTTGGAAAT+TGG + chr4.3:24091360-24091379 MS.gene33834:intron 25.0%
! GAAAAGCAACTAAAAGATTT+GGG + chr4.3:24090294-24090313 MS.gene33834:CDS 25.0%
! GCAAAATTGTAATTTCCTAA+TGG + chr4.3:24088072-24088091 MS.gene33834:CDS 25.0%
! GGTATTTATTACAGAAAAAC+AGG - chr4.3:24091334-24091353 None:intergenic 25.0%
! GTTGTTCTATCATGTAATTT+GGG + chr4.3:24091214-24091233 MS.gene33834:intron 25.0%
! TTAATATAGTTAACCTGTCA+AGG + chr4.3:24090682-24090701 MS.gene33834:intron 25.0%
! TTATTATAGTTTCTTCTCCT+TGG + chr4.3:24089756-24089775 MS.gene33834:intron 25.0%
! TTCAAATCTATTGCTTCTTT+CGG - chr4.3:24088391-24088410 None:intergenic 25.0%
! TTCAGATCATCCTATAATAT+AGG + chr4.3:24091386-24091405 MS.gene33834:intron 25.0%
! TTTCAGACATTTCTAATTGA+TGG + chr4.3:24087549-24087568 MS.gene33834:intron 25.0%
!! AAAATCTCTCAACTTTTAGT+GGG + chr4.3:24089199-24089218 MS.gene33834:CDS 25.0%
!! AATTTTGCAGTATTTCAAGA+AGG - chr4.3:24088060-24088079 None:intergenic 25.0%
!! ATTTTCAGTTTAGGTACTAT+TGG + chr4.3:24088592-24088611 MS.gene33834:CDS 25.0%
!! ATTTTGCAGTATTTCAAGAA+GGG - chr4.3:24088059-24088078 None:intergenic 25.0%
!! GTATTTTTCTTGACAAAGTT+CGG + chr4.3:24087865-24087884 MS.gene33834:intron 25.0%
!! GTTTTTCTGTAATAAATACC+AGG + chr4.3:24091334-24091353 MS.gene33834:intron 25.0%
!! TAACGGCATTATGAAAATTT+TGG - chr4.3:24089999-24090018 None:intergenic 25.0%
!! TCAATAGTTTAAGACATGTT+TGG + chr4.3:24087264-24087283 MS.gene33834:intron 25.0%
!! TGATGCAATTGTTTTCAATT+AGG + chr4.3:24088026-24088045 MS.gene33834:intron 25.0%
!! TTTTTGGATATATCCAATAG+CGG + chr4.3:24091092-24091111 MS.gene33834:intron 25.0%
!!! AAGTATCGTCTCAAATTTTT+CGG + chr4.3:24088227-24088246 MS.gene33834:CDS 25.0%
!!! ATCTGTCTCCTTTTTAAAAT+TGG + chr4.3:24091438-24091457 MS.gene33834:intron 25.0%
AAAAAGGAACATAGAAATCC+TGG + chr4.3:24088189-24088208 MS.gene33834:CDS 30.0%
AATTACATGATAGAACAACG+AGG - chr4.3:24091213-24091232 None:intergenic 30.0%
ACAGTACATCCATAATTCAT+TGG - chr4.3:24091897-24091916 None:intergenic 30.0%
ACATCATATACTCCACAATT+TGG + chr4.3:24090426-24090445 MS.gene33834:CDS 30.0%
ACTATTACTTAGCGTATGTT+TGG - chr4.3:24087605-24087624 None:intergenic 30.0%
ACTTATTTGAGCTAATCTAC+CGG - chr4.3:24087578-24087597 None:intergenic 30.0%
AGAAATTCTCTAAGCAATCA+AGG - chr4.3:24087669-24087688 None:intergenic 30.0%
AGCAATAGATTTGAACAACA+TGG + chr4.3:24088396-24088415 MS.gene33834:CDS 30.0%
AGTAATCTTATCTACTGAGT+TGG + chr4.3:24090754-24090773 MS.gene33834:intron 30.0%
ATTTGAACAACATGGAAGTT+AGG + chr4.3:24088404-24088423 MS.gene33834:CDS 30.0%
CAGTTCTCTTTGTAATACAT+GGG + chr4.3:24091790-24091809 MS.gene33834:CDS 30.0%
CATTACAGGAGGAAAAAAAT+CGG + chr4.3:24089628-24089647 MS.gene33834:CDS 30.0%
CGAAAAGCAACTAAAAGATT+TGG + chr4.3:24090293-24090312 MS.gene33834:CDS 30.0%
CGTTGTTCTATCATGTAATT+TGG + chr4.3:24091213-24091232 MS.gene33834:intron 30.0%
CTTGTTCTCATTGATGAAAT+TGG + chr4.3:24089270-24089289 MS.gene33834:CDS 30.0%
GATCTTTGCAAAAGAAGAAA+AGG - chr4.3:24090154-24090173 None:intergenic 30.0%
GGATTGGATATCTATTAATG+AGG - chr4.3:24089927-24089946 None:intergenic 30.0%
GTAATCTTATCTACTGAGTT+GGG + chr4.3:24090755-24090774 MS.gene33834:intron 30.0%
GTTCATAATTTCTGCATGAA+TGG - chr4.3:24089682-24089701 None:intergenic 30.0%
TCAGTTCTCTTTGTAATACA+TGG + chr4.3:24091789-24091808 MS.gene33834:CDS 30.0%
TCATTAGATCAGAACGAAAA+AGG + chr4.3:24088173-24088192 MS.gene33834:CDS 30.0%
TGATATTTATTATGGTCCAG+CGG + chr4.3:24091671-24091690 MS.gene33834:CDS 30.0%
TTAATAGATATCCAATCCTC+GGG + chr4.3:24089929-24089948 MS.gene33834:intron 30.0%
TTATCATACTATATGGACCA+AGG - chr4.3:24089776-24089795 None:intergenic 30.0%
TTGCTTAGAGAATTTCTGTA+TGG + chr4.3:24087672-24087691 MS.gene33834:intron 30.0%
TTTCAGATAATGTCACACTA+AGG + chr4.3:24088731-24088750 MS.gene33834:CDS 30.0%
! AAGTTGAGAGATTTTGTTCA+AGG - chr4.3:24089194-24089213 None:intergenic 30.0%
! AGTATCGTCTCAAATTTTTC+GGG + chr4.3:24088228-24088247 MS.gene33834:CDS 30.0%
! AGTTGAGAGATTTTGTTCAA+GGG - chr4.3:24089193-24089212 None:intergenic 30.0%
! ATCAACGTTTTTGATGTCTA+TGG + chr4.3:24087737-24087756 MS.gene33834:intron 30.0%
! ATCTAAGTACTTTGAAGGAA+AGG + chr4.3:24089394-24089413 MS.gene33834:CDS 30.0%
! ATGAAAATTTTGGATGGAAG+AGG - chr4.3:24089989-24090008 None:intergenic 30.0%
! CAAAATCTCTCAACTTTTAG+TGG + chr4.3:24089198-24089217 MS.gene33834:CDS 30.0%
! GGCATTATGAAAATTTTGGA+TGG - chr4.3:24089995-24090014 None:intergenic 30.0%
! GTATGTCCAATTTTCAGTTT+AGG + chr4.3:24088583-24088602 MS.gene33834:CDS 30.0%
! GTTGACTTCAAAATTAGATC+TGG + chr4.3:24088841-24088860 MS.gene33834:CDS 30.0%
! GTTTGATAGTTTGAAACACT+TGG + chr4.3:24087188-24087207 MS.gene33834:CDS 30.0%
! TCAACGTTTTTGATGTCTAT+GGG + chr4.3:24087738-24087757 MS.gene33834:intron 30.0%
! TCTAAGTACTTTGAAGGAAA+GGG + chr4.3:24089395-24089414 MS.gene33834:CDS 30.0%
! TTCTTTTGCAAAGATCCAAA+GGG + chr4.3:24090158-24090177 MS.gene33834:intron 30.0%
! TTGCATAGATTGCAATCTTT+TGG + chr4.3:24088117-24088136 MS.gene33834:CDS 30.0%
! TTTCATAATGCCGTTATTTC+TGG + chr4.3:24090003-24090022 MS.gene33834:intron 30.0%
! TTTTGCAGTATTTCAAGAAG+GGG - chr4.3:24088058-24088077 None:intergenic 30.0%
!! TTCATAATGCCGTTATTTCT+GGG + chr4.3:24090004-24090023 MS.gene33834:intron 30.0%
!!! ACACTCTTTTAAGACCTTAT+TGG - chr4.3:24087919-24087938 None:intergenic 30.0%
!!! CACTCTTTTAAGACCTTATT+GGG - chr4.3:24087918-24087937 None:intergenic 30.0%
!!! GATCTAATTTTGAAGTCAAC+TGG - chr4.3:24088841-24088860 None:intergenic 30.0%
AAACCTTGCAACCAACTTAT+AGG + chr4.3:24089457-24089476 MS.gene33834:CDS 35.0%
AACCTTGCAACCAACTTATA+GGG + chr4.3:24089458-24089477 MS.gene33834:CDS 35.0%
AACTGCTTCAATGAAAACGT+TGG + chr4.3:24088906-24088925 MS.gene33834:CDS 35.0%
AATCCTGGACTCTTTATTGA+AGG + chr4.3:24088204-24088223 MS.gene33834:CDS 35.0%
AATGCTCTATCAGTCATTAC+AGG + chr4.3:24089614-24089633 MS.gene33834:CDS 35.0%
AATTATGAACGTGTACTCTG+AGG + chr4.3:24089692-24089711 MS.gene33834:CDS 35.0%
AATTGACCATGCACAAAAGT+GGG + chr4.3:24089551-24089570 MS.gene33834:CDS 35.0%
ACTCAAAATTGCTCTTTCCT+CGG - chr4.3:24088449-24088468 None:intergenic 35.0%
ACTGCTTCAATGAAAACGTT+GGG + chr4.3:24088907-24088926 MS.gene33834:CDS 35.0%
ACTTAGATCAGCATAATGAG+TGG - chr4.3:24089382-24089401 None:intergenic 35.0%
AGAAAAGTCCAAAACTTCCT+TGG + chr4.3:24088974-24088993 MS.gene33834:CDS 35.0%
AGAAGAAAAGGAAAAGAGTG+AGG - chr4.3:24090142-24090161 None:intergenic 35.0%
AGAGGATGCAAAATCTCAAA+TGG + chr4.3:24090251-24090270 MS.gene33834:CDS 35.0%
CAAACTATCAAACAATTCCC+TGG - chr4.3:24087181-24087200 None:intergenic 35.0%
CAAATATGATGTTAGGAACC+TGG - chr4.3:24091355-24091374 None:intergenic 35.0%
CAGGTTCCTAACATCATATT+TGG + chr4.3:24091353-24091372 MS.gene33834:intron 35.0%
CAGTATCTTACAATATCTGC+GGG + chr4.3:24089332-24089351 MS.gene33834:CDS 35.0%
CATAATGTCATGTCCCAATA+AGG + chr4.3:24087902-24087921 MS.gene33834:intron 35.0%
CCAGAAAGTCCAATGAATTA+TGG + chr4.3:24091885-24091904 MS.gene33834:CDS 35.0%
CCAGTATCTTACAATATCTG+CGG + chr4.3:24089331-24089350 MS.gene33834:CDS 35.0%
CCATAATTCATTGGACTTTC+TGG - chr4.3:24091888-24091907 None:intergenic 35.0%
CTAATTGCTTTGCACTTTCT+TGG + chr4.3:24090101-24090120 MS.gene33834:intron 35.0%
CTATTGTAGAAACCACTGAA+TGG + chr4.3:24091609-24091628 MS.gene33834:intron 35.0%
CTCATTGATGAAATTGGTAG+TGG + chr4.3:24089276-24089295 MS.gene33834:CDS 35.0%
CTCTTTGTAATACATGGGAT+GGG + chr4.3:24091795-24091814 MS.gene33834:CDS 35.0%
CTGTATCTAATCATTCACAC+AGG + chr4.3:24087214-24087233 MS.gene33834:CDS 35.0%
GAAACAATCTTGGTACAGTA+TGG + chr4.3:24090516-24090535 MS.gene33834:CDS 35.0%
GAAGAAAAGGAAAAGAGTGA+GGG - chr4.3:24090141-24090160 None:intergenic 35.0%
GAGTATGTAAATAGCTAGAG+GGG + chr4.3:24091118-24091137 MS.gene33834:intron 35.0%
GATCGACGCTTAGTAATAAA+TGG - chr4.3:24088271-24088290 None:intergenic 35.0%
GCAAACATCTAAGAATACTG+TGG + chr4.3:24091695-24091714 MS.gene33834:CDS 35.0%
GGAGGAAAAAAATCGGTTAA+AGG + chr4.3:24089635-24089654 MS.gene33834:CDS 35.0%
GGAGTATGTAAATAGCTAGA+GGG + chr4.3:24091117-24091136 MS.gene33834:intron 35.0%
GGATATCTATTAATGAGGCA+CGG - chr4.3:24089922-24089941 None:intergenic 35.0%
TAATAGATATCCAATCCTCG+GGG + chr4.3:24089930-24089949 MS.gene33834:intron 35.0%
TAATTGACCATGCACAAAAG+TGG + chr4.3:24089550-24089569 MS.gene33834:CDS 35.0%
TATAGGTATTTGCTTCCAGA+AGG + chr4.3:24088319-24088338 MS.gene33834:CDS 35.0%
TATCATGTAATTTGGGTGAC+CGG + chr4.3:24091221-24091240 MS.gene33834:intron 35.0%
TCTCTTTGTAATACATGGGA+TGG + chr4.3:24091794-24091813 MS.gene33834:CDS 35.0%
TCTGGAAATTCTTCTGAGTT+GGG + chr4.3:24088754-24088773 MS.gene33834:CDS 35.0%
TGCTGATCTAAGTACTTTGA+AGG + chr4.3:24089389-24089408 MS.gene33834:CDS 35.0%
TTAAGCATAGCGCAATCTAT+TGG + chr4.3:24089513-24089532 MS.gene33834:CDS 35.0%
TTCAGTTTAGGTACTATTGG+AGG + chr4.3:24088595-24088614 MS.gene33834:CDS 35.0%
TTCCAGTGAAAATTCCATTG+CGG - chr4.3:24089439-24089458 None:intergenic 35.0%
TTTATTTCCATCATCTCTCG+AGG - chr4.3:24087421-24087440 None:intergenic 35.0%
! AATTAGATCTGGAACTAGAG+TGG + chr4.3:24088852-24088871 MS.gene33834:CDS 35.0%
! AATTCTTCTGAGTTGGGTAA+TGG + chr4.3:24088760-24088779 MS.gene33834:CDS 35.0%
! ACCATTTTCCCCAGAAATAA+CGG - chr4.3:24090016-24090035 None:intergenic 35.0%
! AGCAGCTTCTTTTATGCATT+TGG + chr4.3:24087832-24087851 MS.gene33834:intron 35.0%
! AGTATGAGCTTTTACAATGG+AGG - chr4.3:24090367-24090386 None:intergenic 35.0%
! CAGTAAATATTGAGGGTATG+CGG + chr4.3:24088674-24088693 MS.gene33834:CDS 35.0%
! CATTTCTAATTGATGGCTAC+CGG + chr4.3:24087556-24087575 MS.gene33834:intron 35.0%
! CTAATTGCACTTGTGCTTTT+GGG + chr4.3:24087949-24087968 MS.gene33834:intron 35.0%
! CTTCTTTTGCAAAGATCCAA+AGG + chr4.3:24090157-24090176 MS.gene33834:intron 35.0%
! GAAAGTGATGGAAACTGATT+GGG - chr4.3:24087496-24087515 None:intergenic 35.0%
! GCAGCTTCTTTTATGCATTT+GGG + chr4.3:24087833-24087852 MS.gene33834:intron 35.0%
! TCTAATTGCACTTGTGCTTT+TGG + chr4.3:24087948-24087967 MS.gene33834:intron 35.0%
! TGAAAGTGATGGAAACTGAT+TGG - chr4.3:24087497-24087516 None:intergenic 35.0%
! TTCTTTTATGCATTTGGGCT+AGG + chr4.3:24087838-24087857 MS.gene33834:intron 35.0%
!! AGGAGTATGAGCTTTTACAA+TGG - chr4.3:24090370-24090389 None:intergenic 35.0%
!! ATAGCTCTATTGCTATTTCG+CGG - chr4.3:24087530-24087549 None:intergenic 35.0%
!! CGAGAGATGATGGAAATAAA+AGG + chr4.3:24087421-24087440 MS.gene33834:intron 35.0%
!! GAGAACAAGTGATTGTTTTG+AGG - chr4.3:24089259-24089278 None:intergenic 35.0%
!! TATCCGTAAGTTTTTGGAAG+TGG + chr4.3:24089233-24089252 MS.gene33834:CDS 35.0%
!! TCATAATGCCGTTATTTCTG+GGG + chr4.3:24090005-24090024 MS.gene33834:intron 35.0%
!! TTCGTCACACTTTGATTTTC+TGG - chr4.3:24089867-24089886 None:intergenic 35.0%
!! TTGTAATTTCCTAATGGGCT+TGG + chr4.3:24088078-24088097 MS.gene33834:CDS 35.0%
!!! AGGAAGTTTTGGACTTTTCT+TGG - chr4.3:24088974-24088993 None:intergenic 35.0%
!!! ATGTTTTGAAAATGCCGCAA+TGG + chr4.3:24089422-24089441 MS.gene33834:CDS 35.0%
AACATTCAAGACCCAACAGA+TGG - chr4.3:24091504-24091523 None:intergenic 40.0%
AACCAACTTATAGGGTTCTC+TGG + chr4.3:24089466-24089485 MS.gene33834:CDS 40.0%
AACCACTGAATGGAAAATCC+CGG + chr4.3:24091619-24091638 MS.gene33834:CDS 40.0%
AAGAATACTGTGGATCTACG+AGG + chr4.3:24091705-24091724 MS.gene33834:CDS 40.0%
AAGATTGTTTCATCATCCCC+AGG - chr4.3:24090507-24090526 None:intergenic 40.0%
AAGTGTGACGAATGTTGTGA+AGG + chr4.3:24089875-24089894 MS.gene33834:intron 40.0%
ACATTCAAGACCCAACAGAT+GGG - chr4.3:24091503-24091522 None:intergenic 40.0%
ACCAACTTATAGGGTTCTCT+GGG + chr4.3:24089467-24089486 MS.gene33834:CDS 40.0%
AGCATTCACTTCCACTTCAA+TGG + chr4.3:24086939-24086958 MS.gene33834:CDS 40.0%
AGGCCACTTCCAAAAACTTA+CGG - chr4.3:24089239-24089258 None:intergenic 40.0%
AGGTTGCAATTCTGTTGAAG+AGG + chr4.3:24088615-24088634 MS.gene33834:CDS 40.0%
ATAGCCTCAAAACTCTCGAA+TGG + chr4.3:24086893-24086912 MS.gene33834:CDS 40.0%
CATTCACACAGGTTTGAACT+TGG + chr4.3:24087225-24087244 MS.gene33834:intron 40.0%
CCGCAGATATTGTAAGATAC+TGG - chr4.3:24089334-24089353 None:intergenic 40.0%
CCTATGCTCAATGGATGAAT+GGG + chr4.3:24088560-24088579 MS.gene33834:CDS 40.0%
CTATGCTCAATGGATGAATG+GGG + chr4.3:24088561-24088580 MS.gene33834:CDS 40.0%
CTCCAATATCTGCAAGGATA+AGG - chr4.3:24089005-24089024 None:intergenic 40.0%
CTTCCTTCAATAAAGAGTCC+AGG - chr4.3:24088210-24088229 None:intergenic 40.0%
GACATTCAATTACAGACTGC+AGG - chr4.3:24090065-24090084 None:intergenic 40.0%
GACCTTATCCTTGCAGATAT+TGG + chr4.3:24089000-24089019 MS.gene33834:CDS 40.0%
GATAAGACAGTTAGAGAGGA+AGG + chr4.3:24090787-24090806 MS.gene33834:intron 40.0%
GATAATGTCACACTAAGGTC+TGG + chr4.3:24088736-24088755 MS.gene33834:CDS 40.0%
GCAATCAAGGAATCATGCAT+TGG - chr4.3:24087656-24087675 None:intergenic 40.0%
GCATCACTTATGTCAAAAGC+CGG + chr4.3:24088934-24088953 MS.gene33834:CDS 40.0%
GCATTCACTTCCACTTCAAT+GGG + chr4.3:24086940-24086959 MS.gene33834:CDS 40.0%
GCATTCAGAACTATACCTTC+TGG - chr4.3:24088337-24088356 None:intergenic 40.0%
GGGAATAGTCAACAAACTAC+CGG - chr4.3:24087124-24087143 None:intergenic 40.0%
GGGCAATCTAATGAAAGTGA+TGG - chr4.3:24087508-24087527 None:intergenic 40.0%
GTCTGGAAATTCTTCTGAGT+TGG + chr4.3:24088753-24088772 MS.gene33834:CDS 40.0%
GTTAAAGGCTCAAGCTGAAA+AGG + chr4.3:24089650-24089669 MS.gene33834:CDS 40.0%
GTTCTGATCTAATGATCTCC+AGG - chr4.3:24088168-24088187 None:intergenic 40.0%
TAGACGTGAAACGATGCTTA+TGG + chr4.3:24090197-24090216 MS.gene33834:CDS 40.0%
TCTGTACACTAACGCTTTGA+AGG + chr4.3:24091534-24091553 MS.gene33834:intron 40.0%
TGAAACGATGCTTATGGCAA+AGG + chr4.3:24090203-24090222 MS.gene33834:CDS 40.0%
TGAAGAGGACAATGACATTG+CGG + chr4.3:24088630-24088649 MS.gene33834:CDS 40.0%
TGGGGATGATGAAACAATCT+TGG + chr4.3:24090506-24090525 MS.gene33834:CDS 40.0%
TGTCAAGGAAGAAAACAGAG+TGG + chr4.3:24090697-24090716 MS.gene33834:intron 40.0%
TGTTCATCTCTAAGTTACCC+CGG - chr4.3:24091641-24091660 None:intergenic 40.0%
TTAGAGATGAACAGCAGCAA+TGG + chr4.3:24091648-24091667 MS.gene33834:CDS 40.0%
TTAGTAAGAATTGGGGCATG+TGG + chr4.3:24091177-24091196 MS.gene33834:intron 40.0%
TTATGGCAAAGGAAGCTCAA+CGG + chr4.3:24090214-24090233 MS.gene33834:CDS 40.0%
TTGCATCCTCTAACTCTTGT+TGG - chr4.3:24090242-24090261 None:intergenic 40.0%
TTGGATATATCCAATAGCGG+AGG + chr4.3:24091095-24091114 MS.gene33834:intron 40.0%
TTGGGATAAGACAGTTAGAG+AGG + chr4.3:24090783-24090802 MS.gene33834:intron 40.0%
! ACTCTGTTTTCTTCCTTGAC+AGG - chr4.3:24090698-24090717 None:intergenic 40.0%
! AGGTCAAACCAAGGAAGTTT+TGG - chr4.3:24088985-24089004 None:intergenic 40.0%
! AGGTTTGATCGAGAAGCTTT+TGG - chr4.3:24087020-24087039 None:intergenic 40.0%
! AGTTCCATTCGAGAGTTTTG+AGG - chr4.3:24086900-24086919 None:intergenic 40.0%
! CAACAACAACTCGACTTTTC+TGG + chr4.3:24087060-24087079 MS.gene33834:CDS 40.0%
! CAAGGGACTGCAATTTTGAA+GGG - chr4.3:24089176-24089195 None:intergenic 40.0%
! CTCACGTATCCGTAAGTTTT+TGG + chr4.3:24089227-24089246 MS.gene33834:CDS 40.0%
! CTTATCTACTGAGTTGGGAA+CGG + chr4.3:24090760-24090779 MS.gene33834:intron 40.0%
! CTTTTGACATAAGTGATGCC+AGG - chr4.3:24088933-24088952 None:intergenic 40.0%
! GAAAAGTCGAGTTGTTGTTG+AGG - chr4.3:24087060-24087079 None:intergenic 40.0%
! GGGAGTATGTAAATAGCTAG+AGG + chr4.3:24091116-24091135 MS.gene33834:intron 40.0%
! GTTGATGTCGTTTAGAACCT+TGG - chr4.3:24087723-24087742 None:intergenic 40.0%
! TAGGCTTTCAAACTCTGAAG+CGG + chr4.3:24088423-24088442 MS.gene33834:CDS 40.0%
! TCAAGGGACTGCAATTTTGA+AGG - chr4.3:24089177-24089196 None:intergenic 40.0%
! TGGATATATCCAATAGCGGA+GGG + chr4.3:24091096-24091115 MS.gene33834:intron 40.0%
! TTGTTGTTGAGGAATGAGTC+TGG - chr4.3:24087049-24087068 None:intergenic 40.0%
! TTTTGCAAAGATCCAAAGGG+AGG + chr4.3:24090161-24090180 MS.gene33834:intron 40.0%
!! AACCCTATAAGTTGGTTGCA+AGG - chr4.3:24089463-24089482 None:intergenic 40.0%
!! AAGGGACTGCAATTTTGAAG+GGG - chr4.3:24089175-24089194 None:intergenic 40.0%
!! CTCTGGAGCAACATACTTTA+TGG + chr4.3:24088363-24088382 MS.gene33834:CDS 40.0%
!! GGGTAATGGAAATGGAACAA+TGG + chr4.3:24088774-24088793 MS.gene33834:CDS 40.0%
!! TAGCTCTATTGCTATTTCGC+GGG - chr4.3:24087529-24087548 None:intergenic 40.0%
!! TCTGAGTTGGGTAATGGAAA+TGG + chr4.3:24088766-24088785 MS.gene33834:CDS 40.0%
!!! AGTTTTGGACTTTTCTTGGC+AGG - chr4.3:24088970-24088989 None:intergenic 40.0%
!!! ATTTTGAAGTCAACTGGCAC+AGG - chr4.3:24088835-24088854 None:intergenic 40.0%
!!! TTCGAGAGTTTTGAGGCTAT+CGG - chr4.3:24086893-24086912 None:intergenic 40.0%
!!! TTTTGAAGTCAACTGGCACA+GGG - chr4.3:24088834-24088853 None:intergenic 40.0%
AAATAGCTAGAGGGGTTGAG+AGG + chr4.3:24091126-24091145 MS.gene33834:intron 45.0%
AACTGATCCTTCAGAAGGTG+TGG + chr4.3:24089299-24089318 MS.gene33834:CDS 45.0%
AAGCTATCCTCGAGAGATGA+TGG + chr4.3:24087411-24087430 MS.gene33834:intron 45.0%
AAGGAAAAGAGTGAGGGAGA+CGG - chr4.3:24090135-24090154 None:intergenic 45.0%
AAGGTTTGAAGGAGAAGCGA+GGG - chr4.3:24086834-24086853 None:intergenic 45.0%
AATAGCTAGAGGGGTTGAGA+GGG + chr4.3:24091127-24091146 MS.gene33834:intron 45.0%
ACCACTGAATGGAAAATCCC+GGG + chr4.3:24091620-24091639 MS.gene33834:CDS 45.0%
AGTGGAACTGATCCTTCAGA+AGG + chr4.3:24089294-24089313 MS.gene33834:CDS 45.0%
ATCTCAGGACCTAATACTGG+AGG + chr4.3:24088880-24088899 MS.gene33834:CDS 45.0%
CAAACTACCGGAAACAGCAA+CGG - chr4.3:24087112-24087131 None:intergenic 45.0%
CCAACTTATAGGGTTCTCTG+GGG + chr4.3:24089468-24089487 MS.gene33834:CDS 45.0%
CCCATTCATCCATTGAGCAT+AGG - chr4.3:24088563-24088582 None:intergenic 45.0%
GCAAGGATAAGGTCAAACCA+AGG - chr4.3:24088994-24089013 None:intergenic 45.0%
GCATCGTTTCACGTCTATCA+AGG - chr4.3:24090194-24090213 None:intergenic 45.0%
GCCTATGCTCAATGGATGAA+TGG + chr4.3:24088559-24088578 MS.gene33834:CDS 45.0%
GCTCTATCAGTCATTACAGG+AGG + chr4.3:24089617-24089636 MS.gene33834:CDS 45.0%
GGTGATCTCCAATATCTGCA+AGG - chr4.3:24089011-24089030 None:intergenic 45.0%
GGTTCAAAATGAGTGACACG+AGG - chr4.3:24091867-24091886 None:intergenic 45.0%
GTAGCAGAAGCAAGGTTTGA+AGG - chr4.3:24086845-24086864 None:intergenic 45.0%
GTCATCTCAGGACCTAATAC+TGG + chr4.3:24088877-24088896 MS.gene33834:CDS 45.0%
GTTCATCTCTAAGTTACCCC+GGG - chr4.3:24091640-24091659 None:intergenic 45.0%
GTTGCAGGATTCTTTGCACT+TGG - chr4.3:24090588-24090607 None:intergenic 45.0%
TAATACATGGGATGGGCACT+GGG + chr4.3:24091802-24091821 MS.gene33834:CDS 45.0%
TATGGCAAAGGAAGCTCAAC+GGG + chr4.3:24090215-24090234 MS.gene33834:CDS 45.0%
TCTCAGGACCTAATACTGGA+GGG + chr4.3:24088881-24088900 MS.gene33834:CDS 45.0%
TCTGCGGGAACATGTTAACT+TGG + chr4.3:24089347-24089366 MS.gene33834:CDS 45.0%
TGATAGAGCAAGTGAAGACC+TGG + chr4.3:24088147-24088166 MS.gene33834:CDS 45.0%
TGATGGAAACTGATTGGGAG+AGG - chr4.3:24087491-24087510 None:intergenic 45.0%
TGCAGATATTGGAGATCACC+AGG + chr4.3:24089011-24089030 MS.gene33834:CDS 45.0%
TGCTGAGAGTTGCTTGCATA+TGG - chr4.3:24086923-24086942 None:intergenic 45.0%
TTACATACTCCCTCCGCTAT+TGG - chr4.3:24091108-24091127 None:intergenic 45.0%
TTCAATGAAAACGTTGGGCC+TGG + chr4.3:24088912-24088931 MS.gene33834:CDS 45.0%
TTCTTAGATGTTTGCACCGC+TGG - chr4.3:24091690-24091709 None:intergenic 45.0%
! AACTAGTTCTCCCACTCATC+AGG + chr4.3:24090605-24090624 MS.gene33834:CDS 45.0%
! ACTAGTTCTCCCACTCATCA+GGG + chr4.3:24090606-24090625 MS.gene33834:CDS 45.0%
! CGCTGATTGTCATCTCAAGA+TGG - chr4.3:24091755-24091774 None:intergenic 45.0%
! GCAGTTTTCCCTCCAGTATT+AGG - chr4.3:24088892-24088911 None:intergenic 45.0%
! GTTTGTTGATGGGGATGAAG+AGG - chr4.3:24086804-24086823 None:intergenic 45.0%
! TAGATCTGGAACTAGAGTGG+TGG + chr4.3:24088855-24088874 MS.gene33834:CDS 45.0%
! TGCCGCAATGGAATTTTCAC+TGG + chr4.3:24089434-24089453 MS.gene33834:CDS 45.0%
!! AGAAGCTTTTGGCTGTCTGT+TGG - chr4.3:24087009-24087028 None:intergenic 45.0%
!! AGCTCTATTGCTATTTCGCG+GGG - chr4.3:24087528-24087547 None:intergenic 45.0%
!! AGGGATTGAGGGTTTGTTGA+TGG - chr4.3:24086815-24086834 None:intergenic 45.0%
!! ATTCTCTCCGTTGCTGTTTC+CGG + chr4.3:24087102-24087121 MS.gene33834:CDS 45.0%
!! GCCGTTATTTCTGGGGAAAA+TGG + chr4.3:24090012-24090031 MS.gene33834:intron 45.0%
!! GGATTGAGGGTTTGTTGATG+GGG - chr4.3:24086813-24086832 None:intergenic 45.0%
!! GGGATTGAGGGTTTGTTGAT+GGG - chr4.3:24086814-24086833 None:intergenic 45.0%
!! TGTTTTCTAGAGACGACTCC+AGG - chr4.3:24088711-24088730 None:intergenic 45.0%
!!! CGTCTCAAATTTTTCGGGCT+GGG + chr4.3:24088233-24088252 MS.gene33834:CDS 45.0%
!!! GAGTTTTGAGGCTATCGGAT+TGG - chr4.3:24086888-24086907 None:intergenic 45.0%
!!! GTCTCAAATTTTTCGGGCTG+GGG + chr4.3:24088234-24088253 MS.gene33834:CDS 45.0%
!!! TCGTCTCAAATTTTTCGGGC+TGG + chr4.3:24088232-24088251 MS.gene33834:CDS 45.0%
!!! TCTCAAATTTTTCGGGCTGG+GGG + chr4.3:24088235-24088254 MS.gene33834:CDS 45.0%
AAAGCTCATACTCCTGCCGT+TGG + chr4.3:24090375-24090394 MS.gene33834:CDS 50.0%
AACCAGAACAGCAGCAAGAG+CGG + chr4.3:24089586-24089605 MS.gene33834:CDS 50.0%
AAGAACACTCGCTGCTTCCA+GGG + chr4.3:24087161-24087180 MS.gene33834:CDS 50.0%
AAGGAGAAGCGAGGGATTGA+GGG - chr4.3:24086826-24086845 None:intergenic 50.0%
ACCTGCTTTCCCTGATGAGT+GGG - chr4.3:24090618-24090637 None:intergenic 50.0%
ACGGGTCCAACAAGAGTTAG+AGG + chr4.3:24090233-24090252 MS.gene33834:CDS 50.0%
ACTAGAGTGGTGGTCATCTC+AGG + chr4.3:24088865-24088884 MS.gene33834:CDS 50.0%
AGAGACGACTCCAGGAGTAA+TGG - chr4.3:24088703-24088722 None:intergenic 50.0%
AGCAGCGAGTGTTCTTCGAA+CGG - chr4.3:24087157-24087176 None:intergenic 50.0%
ATTTGCACCTGCCCATCTGT+TGG + chr4.3:24091489-24091508 MS.gene33834:intron 50.0%
CAAGAGCTGCCTATGCTCAA+TGG + chr4.3:24088551-24088570 MS.gene33834:CDS 50.0%
CAAGGTTTGAAGGAGAAGCG+AGG - chr4.3:24086835-24086854 None:intergenic 50.0%
CAAGTCCGTGTGAAGGGATT+GGG + chr4.3:24090453-24090472 MS.gene33834:CDS 50.0%
CACAGTGGTAGAATTGCCTG+GGG + chr4.3:24090488-24090507 MS.gene33834:CDS 50.0%
CCACAGTGGTAGAATTGCCT+GGG + chr4.3:24090487-24090506 MS.gene33834:CDS 50.0%
CCACTGAATGGAAAATCCCG+GGG + chr4.3:24091621-24091640 MS.gene33834:CDS 50.0%
CCCCAGAGAACCCTATAAGT+TGG - chr4.3:24089471-24089490 None:intergenic 50.0%
GAAAGAGCCACACCTTCTGA+AGG - chr4.3:24089309-24089328 None:intergenic 50.0%
GCAGGATTCTTTGCACTTGG+TGG - chr4.3:24090585-24090604 None:intergenic 50.0%
GGGAGGAAAATTAGCCACAG+TGG + chr4.3:24090473-24090492 MS.gene33834:CDS 50.0%
GTAATACATGGGATGGGCAC+TGG + chr4.3:24091801-24091820 MS.gene33834:CDS 50.0%
TACCTGCTTTCCCTGATGAG+TGG - chr4.3:24090619-24090638 None:intergenic 50.0%
TAGAATGTGCGTGGGCATCA+GGG + chr4.3:24088291-24088310 MS.gene33834:CDS 50.0%
TATGCGGCATCCATTACTCC+TGG + chr4.3:24088690-24088709 MS.gene33834:CDS 50.0%
TCGGTTGAGTAGCAGAAGCA+AGG - chr4.3:24086853-24086872 None:intergenic 50.0%
TCTTCGAACGGTGCAAAGCT+CGG - chr4.3:24087145-24087164 None:intergenic 50.0%
TGACCATGCACAAAAGTGGG+TGG + chr4.3:24089554-24089573 MS.gene33834:CDS 50.0%
TGAGTGGGAGAACTAGTTGC+AGG - chr4.3:24090603-24090622 None:intergenic 50.0%
TTCCTCCCAATCCCTTCACA+CGG - chr4.3:24090461-24090480 None:intergenic 50.0%
TTCGATAAGCTGTGCGACCA+AGG + chr4.3:24087703-24087722 MS.gene33834:intron 50.0%
TTGAGGAATGAGTCTGGCAG+CGG - chr4.3:24087043-24087062 None:intergenic 50.0%
TTTGCACCTGCCCATCTGTT+GGG + chr4.3:24091490-24091509 MS.gene33834:intron 50.0%
! AATACATGGGATGGGCACTG+GGG + chr4.3:24091803-24091822 MS.gene33834:CDS 50.0%
! AGGGTTCTCTGGGGATGTAT+TGG + chr4.3:24089477-24089496 MS.gene33834:CDS 50.0%
! CGGACTTGCTCTCCAAATTG+TGG - chr4.3:24090441-24090460 None:intergenic 50.0%
! CGTCGATCTAGAATGTGCGT+GGG + chr4.3:24088283-24088302 MS.gene33834:CDS 50.0%
! CTACTGAGTTGGGAACGGTT+GGG + chr4.3:24090765-24090784 MS.gene33834:intron 50.0%
! GCTATCGGATTGGACTGAGT+TGG - chr4.3:24086878-24086897 None:intergenic 50.0%
! GCTTCTAAAAGCGCGTCACA+AGG + chr4.3:24088796-24088815 MS.gene33834:CDS 50.0%
! GGATTGGACTGAGTTGGACT+CGG - chr4.3:24086872-24086891 None:intergenic 50.0%
! TCTACTGAGTTGGGAACGGT+TGG + chr4.3:24090764-24090783 MS.gene33834:intron 50.0%
!! TCTCCACCCACTTTTGTGCA+TGG - chr4.3:24089560-24089579 None:intergenic 50.0%
AATGCGATCAGCGCCACTGA+TGG - chr4.3:24090406-24090425 None:intergenic 55.0%
AGTACGTCCGACGGGTAAAC+GGG - chr4.3:24086986-24087005 None:intergenic 55.0%
ATGCGATCAGCGCCACTGAT+GGG - chr4.3:24090405-24090424 None:intergenic 55.0%
CAAGGTCTTCTGCCTCCCTT+TGG - chr4.3:24090176-24090195 None:intergenic 55.0%
CAATGACATTGCGGTCGTGC+AGG + chr4.3:24088639-24088658 MS.gene33834:CDS 55.0%
CCCAGGCAATTCTACCACTG+TGG - chr4.3:24090490-24090509 None:intergenic 55.0%
CTAGAATGTGCGTGGGCATC+AGG + chr4.3:24088290-24088309 MS.gene33834:CDS 55.0%
CTTCGAACGGTGCAAAGCTC+GGG - chr4.3:24087144-24087163 None:intergenic 55.0%
CTTGGCAGGCAGATGCATTC+CGG - chr4.3:24088956-24088975 None:intergenic 55.0%
GAAGAACACTCGCTGCTTCC+AGG + chr4.3:24087160-24087179 MS.gene33834:CDS 55.0%
GAAGGAGAAGCGAGGGATTG+AGG - chr4.3:24086827-24086846 None:intergenic 55.0%
GAGTACGTCCGACGGGTAAA+CGG - chr4.3:24086987-24087006 None:intergenic 55.0%
GAGTGAGGGAGACGGATAGA+CGG - chr4.3:24090127-24090146 None:intergenic 55.0%
GATGGGGATGAAGAGGTTGC+AGG - chr4.3:24086797-24086816 None:intergenic 55.0%
GCAAGTCCGTGTGAAGGGAT+TGG + chr4.3:24090452-24090471 MS.gene33834:CDS 55.0%
GCCACAGTGGTAGAATTGCC+TGG + chr4.3:24090486-24090505 MS.gene33834:CDS 55.0%
GCCACTGATGGGAGAACCAA+CGG - chr4.3:24090394-24090413 None:intergenic 55.0%
GGAGAGCAAGTCCGTGTGAA+GGG + chr4.3:24090447-24090466 MS.gene33834:CDS 55.0%
GGATCTACGAGGTATGCGAC+TGG + chr4.3:24091716-24091735 MS.gene33834:CDS 55.0%
GTATGTTGCTCCAGAGCTGC+TGG - chr4.3:24088359-24088378 None:intergenic 55.0%
GTCTGTTGGAGTACGTCCGA+CGG - chr4.3:24086995-24087014 None:intergenic 55.0%
TCAAGACCCAACAGATGGGC+AGG - chr4.3:24091499-24091518 None:intergenic 55.0%
TCCCACTCATCAGGGAAAGC+AGG + chr4.3:24090614-24090633 MS.gene33834:CDS 55.0%
TCTGTTGGAGTACGTCCGAC+GGG - chr4.3:24086994-24087013 None:intergenic 55.0%
TCTTGGCTATCCCCGAGGAT+TGG - chr4.3:24089943-24089962 None:intergenic 55.0%
TGAGGCACGGCATGATGTGT+TGG - chr4.3:24089909-24089928 None:intergenic 55.0%
TGGAGAGCAAGTCCGTGTGA+AGG + chr4.3:24090446-24090465 MS.gene33834:CDS 55.0%
TGGGCATCAGGGCTTCGTAT+AGG + chr4.3:24088302-24088321 MS.gene33834:CDS 55.0%
! CCCCGGGATTTTCCATTCAG+TGG - chr4.3:24091624-24091643 None:intergenic 55.0%
! GCGTCGATCTAGAATGTGCG+TGG + chr4.3:24088282-24088301 MS.gene33834:CDS 55.0%
! GTTCTGAATGCCAGCAGCTC+TGG + chr4.3:24088346-24088365 MS.gene33834:CDS 55.0%
!! TTCAAACTCTGAAGCGGCCG+AGG + chr4.3:24088429-24088448 MS.gene33834:CDS 55.0%
AACAGCGCCCGTTTACCCGT+CGG + chr4.3:24086976-24086995 MS.gene33834:CDS 60.0%
ACAGCTCTTGGCTATCCCCG+AGG - chr4.3:24089948-24089967 None:intergenic 60.0%
AGGAATGAGTCTGGCAGCGG+AGG - chr4.3:24087040-24087059 None:intergenic 60.0%
AGGGGTTGAGAGGGAGAGAC+CGG + chr4.3:24091136-24091155 MS.gene33834:intron 60.0%
CTCCGCTCTTGCTGCTGTTC+TGG - chr4.3:24089591-24089610 None:intergenic 60.0%
CTGATGGGAGAACCAACGGC+AGG - chr4.3:24090390-24090409 None:intergenic 60.0%
GAACAGCAGCAAGAGCGGAG+AGG + chr4.3:24089591-24089610 MS.gene33834:CDS 60.0%
GTCCGTGTGAAGGGATTGGG+AGG + chr4.3:24090456-24090475 MS.gene33834:CDS 60.0%
TCCTGCGCTCCAAGCCCATT+AGG - chr4.3:24088090-24088109 None:intergenic 60.0%
!! GCCGTTGGTTCTCCCATCAG+TGG + chr4.3:24090390-24090409 MS.gene33834:CDS 60.0%
!! TCCTAATGGGCTTGGAGCGC+AGG + chr4.3:24088086-24088105 MS.gene33834:CDS 60.0%
GGCGGAGGAGCCCATTGAAG+TGG - chr4.3:24086953-24086972 None:intergenic 65.0%
! GACGGGTAAACGGGCGCTGT+TGG - chr4.3:24086977-24086996 None:intergenic 65.0%
! GGGTAAACGGGCGCTGTTGG+CGG - chr4.3:24086974-24086993 None:intergenic 65.0%
! TAAACGGGCGCTGTTGGCGG+CGG - chr4.3:24086971-24086990 None:intergenic 65.0%
!! ACGGGCGCTGTTGGCGGCGG+AGG - chr4.3:24086968-24086987 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 24086784 24091932 24086784 ID=MS.gene33834
chr4.3 mRNA 24086784 24091932 24086784 ID=MS.gene33834.t1;Parent=MS.gene33834
chr4.3 exon 24086784 24087235 24086784 ID=MS.gene33834.t1.exon1;Parent=MS.gene33834.t1
chr4.3 CDS 24086784 24087235 24086784 ID=cds.MS.gene33834.t1;Parent=MS.gene33834.t1
chr4.3 exon 24088048 24089032 24088048 ID=MS.gene33834.t1.exon2;Parent=MS.gene33834.t1
chr4.3 CDS 24088048 24089032 24088048 ID=cds.MS.gene33834.t1;Parent=MS.gene33834.t1
chr4.3 exon 24089189 24089713 24089189 ID=MS.gene33834.t1.exon3;Parent=MS.gene33834.t1
chr4.3 CDS 24089189 24089713 24089189 ID=cds.MS.gene33834.t1;Parent=MS.gene33834.t1
chr4.3 exon 24090171 24090635 24090171 ID=MS.gene33834.t1.exon4;Parent=MS.gene33834.t1
chr4.3 CDS 24090171 24090635 24090171 ID=cds.MS.gene33834.t1;Parent=MS.gene33834.t1
chr4.3 exon 24091618 24091932 24091618 ID=MS.gene33834.t1.exon5;Parent=MS.gene33834.t1
chr4.3 CDS 24091618 24091932 24091618 ID=cds.MS.gene33834.t1;Parent=MS.gene33834.t1
Gene Sequence

>MS.gene33834

ATGCAACTCACCTGCAACCTCTTCATCCCCATCAACAAACCCTCAATCCCTCGCTTCTCCTTCAAACCTTGCTTCTGCTACTCAACCGAGTCCAACTCAGTCCAATCCGATAGCCTCAAAACTCTCGAATGGAACTCCATATGCAAGCAACTCTCAGCATTCACTTCCACTTCAATGGGCTCCTCCGCCGCCAACAGCGCCCGTTTACCCGTCGGACGTACTCCAACAGACAGCCAAAAGCTTCTCGATCAAACCTCCGCTGCCAGACTCATTCCTCAACAACAACTCGACTTTTCTGGAATACATGACTTGACTGACATTCTCTCCGTTGCTGTTTCCGGTAGTTTGTTGACTATTCCCGAGCTTTGCACCGTTCGAAGAACACTCGCTGCTTCCAGGGAATTGTTTGATAGTTTGAAACACTTGGCTTCTGTATCTAATCATTCACACAGGTTTGAACTTGGAATCTAACTCAAAAACTCAATAGTTTAAGACATGTTTGGATAAACAACTTAACAAAGTGCTTATCATACAAGTGATTATGTATTATGTTTGAAGTTAGTAGTTCGATAACAAAAGATAAAATAAAATCAAATTGTTTTTATATAAGCTAGAAGATGTTTTCATAAGCTATCCTCGAGAGATGATGGAAATAAAAGGAAACAGTTTATGGGCACATCATAATCTATTAACATGTTACATAACCTCTCCCAATCAGTTTCCATCACTTTCATTAGATTGCCCCGCGAAATAGCAATAGAGCTATTTCAGACATTTCTAATTGATGGCTACCGGTAGATTAGCTCAAATAAGTCAATCCAAACATACGCTAAGTAATAGTTGTTTTAAGCAACACTTATTCATTCTTACCAATGCATGATTCCTTGATTGCTTAGAGAATTTCTGTATGGAGATTAAATTCGATAAGCTGTGCGACCAAGGTTCTAAACGACATCAACGTTTTTGATGTCTATGGGAAGTCATATCAGTCAGTTTGAGTGCACTACAAGTTTTTTTTTTTTCTTTTCATAATCTGATTCAGTTCACAAGCAGCTTCTTTTATGCATTTGGGCTAGGTGTTGTATTTTTCTTGACAAAGTTCGGAGCATAGATCATTTCATAATGTCATGTCCCAATAAGGTCTTAAAAGAGTGTTAGTAATACTCTAATTGCACTTGTGCTTTTGGGCATAACTGATTCCTTTTACAAATCCAAAGTAAAAGTTCACAAAAATAACTTCGCTGATGCAATTGTTTTCAATTAGGTACTCACCCCTTCTTGAAATACTGCAAAATTGTAATTTCCTAATGGGCTTGGAGCGCAGGATAGAATTTTGCATAGATTGCAATCTTTTGGTAATTCTTGATAGAGCAAGTGAAGACCTGGAGATCATTAGATCAGAACGAAAAAGGAACATAGAAATCCTGGACTCTTTATTGAAGGAAGTATCGTCTCAAATTTTTCGGGCTGGGGGTATTGACAGACCATTTATTACTAAGCGTCGATCTAGAATGTGCGTGGGCATCAGGGCTTCGTATAGGTATTTGCTTCCAGAAGGTATAGTTCTGAATGCCAGCAGCTCTGGAGCAACATACTTTATGGAACCGAAAGAAGCAATAGATTTGAACAACATGGAAGTTAGGCTTTCAAACTCTGAAGCGGCCGAGGAAAGAGCAATTTTGAGTATGCTTGCATCTGAAATAGCAAATTCAGAATCAGAGATAAAATATTTGTTGGATAAAATTCTTGAGATTGATCTTGCTTTTGCAAGAGCTGCCTATGCTCAATGGATGAATGGGGTATGTCCAATTTTCAGTTTAGGTACTATTGGAGGTTGCAATTCTGTTGAAGAGGACAATGACATTGCGGTCGTGCAGGATGACGATTTAACAGTAAATATTGAGGGTATGCGGCATCCATTACTCCTGGAGTCGTCTCTAGAAAACATTTCAGATAATGTCACACTAAGGTCTGGAAATTCTTCTGAGTTGGGTAATGGAAATGGAACAATGGCTTCTAAAAGCGCGTCACAAGGCATAACAGACTTCCCTGTGCCAGTTGACTTCAAAATTAGATCTGGAACTAGAGTGGTGGTCATCTCAGGACCTAATACTGGAGGGAAAACTGCTTCAATGAAAACGTTGGGCCTGGCATCACTTATGTCAAAAGCCGGAATGCATCTGCCTGCCAAGAAAAGTCCAAAACTTCCTTGGTTTGACCTTATCCTTGCAGATATTGGAGATCACCAGGTAATATCTGAACTTTTTTATGCATGATGAAGATTTTTTATTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTCATGTGGCTGTTTCATTTGTGTCTGATCTTTTTCTCCCCTTCAAAATTGCAGTCCCTTGAACAAAATCTCTCAACTTTTAGTGGGCACATCTCACGTATCCGTAAGTTTTTGGAAGTGGCCTCAAAACAATCACTTGTTCTCATTGATGAAATTGGTAGTGGAACTGATCCTTCAGAAGGTGTGGCTCTTTCTGCCAGTATCTTACAATATCTGCGGGAACATGTTAACTTGGCTGTTGTGACCACTCATTATGCTGATCTAAGTACTTTGAAGGAAAGGGATACATGTTTTGAAAATGCCGCAATGGAATTTTCACTGGAAACCTTGCAACCAACTTATAGGGTTCTCTGGGGATGTATTGGTGATTCAAATGCATTAAGCATAGCGCAATCTATTGGCTTTGATAAAAATATAATTGACCATGCACAAAAGTGGGTGGAGAAATTAAAACCAGAACAGCAGCAAGAGCGGAGAGGAATGCTCTATCAGTCATTACAGGAGGAAAAAAATCGGTTAAAGGCTCAAGCTGAAAAGGCTGCTTCCATTCATGCAGAAATTATGAACGTGTACTCTGAGGTACAATCTAGCTGTTCAGTTAGAAATAGATAATGTGTTTCTTTATTATAGTTTCTTCTCCTTGGTCCATATAGTATGATAATCATTATTGTCCCTTTTAAAGTTTATCTGAAATTTGCATCGTTCATAAGTAATGACTCAGTAAATTGACCAGAAAATCAAAGTGTGACGAATGTTGTGAAGGTCTTTTGACCAACACATCATGCCGTGCCTCATTAATAGATATCCAATCCTCGGGGATAGCCAAGAGCTGTTAATTTAAATATGTAGCGCCTCTTCCATCCAAAATTTTCATAATGCCGTTATTTCTGGGGAAAATGGTTCAGCGTAAGAATTGTAGAGCATTTGCCTGCAGTCTGTAATTGAATGTCATCATATTTGCTGTTGCTAATTGCTTTGCACTTTCTTGGCCGTCTATCCGTCTCCCTCACTCTTTTCCTTTTCTTCTTTTGCAAAGATCCAAAGGGAGGCAGAAGACCTTGATAGACGTGAAACGATGCTTATGGCAAAGGAAGCTCAACGGGTCCAACAAGAGTTAGAGGATGCAAAATCTCAAATGGAAATTGTAATACAGAAATTCGAAAAGCAACTAAAAGATTTGGGACGCAACCAACTCAATTCAATAATTAAAGAATCTGAAACTGCAATTGCCTCCATTGTAAAAGCTCATACTCCTGCCGTTGGTTCTCCCATCAGTGGCGCTGATCGCATTACATCATATACTCCACAATTTGGAGAGCAAGTCCGTGTGAAGGGATTGGGAGGAAAATTAGCCACAGTGGTAGAATTGCCTGGGGATGATGAAACAATCTTGGTACAGTATGGTAAAGTGAAAGTACGTGTGAAGAAAAATCGCATCAGAGCTATTCCACCAAGTGCAAAGAATCCTGCAACTAGTTCTCCCACTCATCAGGGAAAGCAGGTATGTACAAAGAAATCTTTGCTGTCATATAAATAATCTAATTCAATTAATATAGTTAACCTGTCAAGGAAGAAAACAGAGTGGTATACGTTTCCATTAAGAAAGTTATTTTGCAAGCAGTAATCTTATCTACTGAGTTGGGAACGGTTGGGATAAGACAGTTAGAGAGGAAGGTTACTTCCTCTAGTTTCAAATATAATAAGAAGAAAAAAAGTAGTTCGCGCTAGTTAAGAATACTATAAAATCATATTTAATTTTTTGATGTAATAAAAAATATATTGTATTATCTAAAATATTCTTCGTGGAAACTTGTTTCATATAAGTAAAAGAAGTTATTGGAAAATGAAATCCAAATTTTATTGAAAGGTATTTTATATTTAATCTGGCATTTTTTCTTTTGAAGTAATGGTAAAATTAATTTAGAATTGATATATTTTGGATCCCCAAACATAGACTTTTTTGGATATATCCAATAGCGGAGGGAGTATGTAAATAGCTAGAGGGGTTGAGAGGGAGAGACCGGAGAGTATTTGTTACTATTTTAGTAAGAATTGGGGCATGTGGAGTTGTAGATCCTCGTTGTTCTATCATGTAATTTGGGTGACCGGAGAGTATTTGTTACTATTTTAGTAAGAATTGGGGCATGTGGAGTTGTAGATCCTCGTTGTTCTATCATGTAATTTGGGTAGCTTTCTCCTGTTTTTCTGTAATAAATACCAGGTTCCTAACATCATATTTGGAAATTGGAACTTCAGATCATCCTATAATATAGGCACATTGAATTGAATTTTCTATAAAATTAATCTGTCTCCTTTTTAAAATTGGCTTCTTAACCTAATTTGATTTAGACAAAATTTGCACCTGCCCATCTGTTGGGTCTTGAATGTTTGTAGAATTTTCTGTACACTAACGCTTTGAAGGATGACAGTAATTGATCTATATCAAACTGCTGAGTTTGAACACTGTTGATTTACTATTGTAGAAACCACTGAATGGAAAATCCCGGGGTAACTTAGAGATGAACAGCAGCAATGGTGATATTTATTATGGTCCAGCGGTGCAAACATCTAAGAATACTGTGGATCTACGAGGTATGCGACTGGAAGAAGCTGCGATCCATCTTGAGATGACAATCAGCGCAAGTCAGCCATATTCAGTTCTCTTTGTAATACATGGGATGGGCACTGGGGCTGTTAAAGATCGTGCACTTGCTATTCTGCAAAAGCATCCTCGTGTCACTCATTTTGAACCAGAAAGTCCAATGAATTATGGATGTACTGTTGCACGTGTTAAGTGA
Protein sequence

>MS.gene33834.t1

MQLTCNLFIPINKPSIPRFSFKPCFCYSTESNSVQSDSLKTLEWNSICKQLSAFTSTSMGSSAANSARLPVGRTPTDSQKLLDQTSAARLIPQQQLDFSGIHDLTDILSVAVSGSLLTIPELCTVRRTLAASRELFDSLKHLASVSNHSHRYSPLLEILQNCNFLMGLERRIEFCIDCNLLVILDRASEDLEIIRSERKRNIEILDSLLKEVSSQIFRAGGIDRPFITKRRSRMCVGIRASYRYLLPEGIVLNASSSGATYFMEPKEAIDLNNMEVRLSNSEAAEERAILSMLASEIANSESEIKYLLDKILEIDLAFARAAYAQWMNGVCPIFSLGTIGGCNSVEEDNDIAVVQDDDLTVNIEGMRHPLLLESSLENISDNVTLRSGNSSELGNGNGTMASKSASQGITDFPVPVDFKIRSGTRVVVISGPNTGGKTASMKTLGLASLMSKAGMHLPAKKSPKLPWFDLILADIGDHQSLEQNLSTFSGHISRIRKFLEVASKQSLVLIDEIGSGTDPSEGVALSASILQYLREHVNLAVVTTHYADLSTLKERDTCFENAAMEFSLETLQPTYRVLWGCIGDSNALSIAQSIGFDKNIIDHAQKWVEKLKPEQQQERRGMLYQSLQEEKNRLKAQAEKAASIHAEIMNVYSEIQREAEDLDRRETMLMAKEAQRVQQELEDAKSQMEIVIQKFEKQLKDLGRNQLNSIIKESETAIASIVKAHTPAVGSPISGADRITSYTPQFGEQVRVKGLGGKLATVVELPGDDETILVQYGKVKVRVKKNRIRAIPPSAKNPATSSPTHQGKQKPLNGKSRGNLEMNSSNGDIYYGPAVQTSKNTVDLRGMRLEEAAIHLEMTISASQPYSVLFVIHGMGTGAVKDRALAILQKHPRVTHFEPESPMNYGCTVARVK