AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025317.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025317.01.T01 MTR_5g026350 98.429 573 9 0 1 573 1 573 0.0 1146
MsG0580025317.01.T01 MTR_8g071920 73.217 575 148 4 1 572 42 613 0.0 803
MsG0580025317.01.T01 MTR_7g083660 59.227 569 216 5 1 565 1 557 0.0 634
MsG0580025317.01.T01 MTR_3g466040 38.011 563 295 12 1 559 1 513 1.10e-105 328
MsG0580025317.01.T01 MTR_3g466110 37.244 537 272 14 1 528 1 481 2.19e-98 308
MsG0580025317.01.T01 MTR_4g073690 32.143 560 337 14 5 559 13 534 4.19e-76 251
MsG0580025317.01.T01 MTR_5g022380 31.643 572 336 15 5 569 11 534 5.92e-68 229
MsG0580025317.01.T01 MTR_4g073690 31.188 404 245 8 5 405 13 386 3.18e-53 186
MsG0580025317.01.T01 MTR_4g116210 28.007 582 367 16 2 559 6 559 6.22e-48 176
MsG0580025317.01.T01 MTR_2g450710 27.101 583 367 16 1 559 5 553 4.19e-46 171
MsG0580025317.01.T01 MTR_5g022380 29.237 472 281 13 103 569 1 424 3.30e-39 149
MsG0580025317.01.T01 MTR_7g029015 25.087 574 396 13 7 558 15 576 1.21e-38 150
MsG0580025317.01.T01 MTR_3g099150 23.220 590 368 16 6 559 14 554 2.90e-31 128
MsG0580025317.01.T01 MTR_1g111550 25.874 572 378 14 7 565 25 563 3.72e-29 122
MsG0580025317.01.T01 MTR_1g111530 25.130 577 385 15 7 569 22 565 4.54e-29 122
MsG0580025317.01.T01 MTR_1g111510 24.739 574 391 14 7 569 26 569 8.29e-29 121
MsG0580025317.01.T01 MTR_1g111540 24.957 581 381 16 7 569 26 569 7.97e-28 118
MsG0580025317.01.T01 MTR_1g059080 25.303 577 384 18 7 569 24 567 5.02e-27 115
MsG0580025317.01.T01 MTR_1g050550 24.315 584 390 17 7 569 24 576 8.86e-26 112
MsG0580025317.01.T01 MTR_2g100400 22.411 589 375 15 5 567 5 537 2.02e-22 101
MsG0580025317.01.T01 MTR_5g090570 30.804 224 142 5 347 567 319 532 3.37e-22 100
MsG0580025317.01.T01 MTR_7g102880 28.992 238 155 9 338 565 344 577 6.86e-15 78.2
MsG0580025317.01.T01 MTR_7g102880 27.861 201 138 4 7 202 29 227 1.35e-11 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025317.01.T01 AT5G45275 66.434 572 181 3 1 568 1 565 0.0 737
MsG0580025317.01.T01 AT4G19450 65.104 576 186 4 1 569 1 568 0.0 721
MsG0580025317.01.T01 AT1G31470 58.627 568 201 8 1 567 37 571 0.0 612
MsG0580025317.01.T01 AT3G01630 51.494 569 229 11 6 566 22 551 0.0 551
MsG0580025317.01.T01 AT3G01630 51.404 570 228 12 6 566 40 569 0.0 551
MsG0580025317.01.T01 AT4G19450 64.593 418 136 3 1 411 1 413 0.0 533
MsG0580025317.01.T01 AT2G30300 35.044 565 288 13 5 559 2 497 2.54e-84 271
MsG0580025317.01.T01 AT4G34950 30.700 557 359 14 7 558 16 550 6.75e-74 246
MsG0580025317.01.T01 AT2G16660 30.466 558 340 14 7 558 14 529 5.04e-64 219
MsG0580025317.01.T01 AT1G80530 27.491 582 353 17 2 559 8 544 5.62e-42 159
MsG0580025317.01.T01 AT2G16660 29.529 403 246 10 7 405 14 382 5.30e-41 153
MsG0580025317.01.T01 AT5G50520 25.835 569 368 16 7 567 16 538 5.15e-39 150
MsG0580025317.01.T01 AT5G50630 25.835 569 368 16 7 567 16 538 5.15e-39 150
MsG0580025317.01.T01 AT2G28120 25.131 573 389 12 7 569 17 559 4.55e-38 148
MsG0580025317.01.T01 AT5G14120 26.471 578 380 14 5 558 14 570 1.75e-37 147
MsG0580025317.01.T01 AT3G01930 26.079 579 386 13 5 558 14 575 6.27e-36 142
MsG0580025317.01.T01 AT2G39210 24.870 579 380 16 7 565 21 564 3.86e-33 134
MsG0580025317.01.T01 AT3G01930 24.466 421 279 10 5 402 14 418 1.76e-20 94.7
MsG0580025317.01.T01 AT3G01930 25.536 466 306 12 117 558 14 462 2.47e-19 91.7
MsG0580025317.01.T01 AT1G74780 28.755 233 151 7 330 558 301 522 1.36e-16 83.6
MsG0580025317.01.T01 AT2G34355 26.271 236 162 5 332 565 145 370 1.97e-14 75.5
MsG0580025317.01.T01 AT1G18940 27.869 244 151 10 333 565 296 525 2.11e-14 76.6
MsG0580025317.01.T01 AT2G34355 26.271 236 162 5 332 565 295 520 4.13e-14 75.5
MsG0580025317.01.T01 AT2G34355 28.856 201 115 7 7 188 7 198 6.33e-12 68.6
MsG0580025317.01.T01 AT2G34350 29.279 222 137 7 351 566 316 523 7.03e-14 74.7
MsG0580025317.01.T01 AT2G34350 29.268 205 123 5 1 188 1 200 9.25e-12 68.2
MsG0580025317.01.T01 AT2G34350 29.279 222 137 7 351 566 316 523 7.03e-14 74.7
MsG0580025317.01.T01 AT2G34350 29.268 205 123 5 1 188 1 200 9.25e-12 68.2

Find 150 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTCATCGTTCTCCTTCTT+TGG 0.177256 5:+16888932 MsG0580025317.01.T01:CDS
AAAGTGTTTGGTTGGTCTTC+TGG 0.219575 5:+16885979 MsG0580025317.01.T01:CDS
CCCAATTGCATTCATCTTGC+TGG 0.229813 5:+16889292 MsG0580025317.01.T01:CDS
AAAGGAAGGTACCAGAAAAT+AGG 0.264959 5:-16886112 None:intergenic
TGGGACGACAATGCTATTTC+TGG 0.278196 5:+16889576 MsG0580025317.01.T01:CDS
ACATGTATAGAACATGATTT+TGG 0.296285 5:+16889786 MsG0580025317.01.T01:three_prime_UTR
TCAATGGGTCTTGTTGGTTA+TGG 0.299224 5:+16886051 MsG0580025317.01.T01:CDS
CATGTTTATTGCTGCTTCAA+TGG 0.301959 5:+16886035 MsG0580025317.01.T01:CDS
CATAATAATGTCTGATTCAT+TGG 0.304186 5:+16889547 MsG0580025317.01.T01:CDS
CCAATTGGATCCCTTCTCTA+TGG 0.305725 5:+16889467 MsG0580025317.01.T01:CDS
ATTCAAAGTAGAAGCAAATA+AGG 0.310941 5:+16889950 MsG0580025317.01.T01:three_prime_UTR
TGGCAGGACAATCAAGAAAA+TGG 0.311458 5:+16885815 MsG0580025317.01.T01:CDS
AGAGAGTGAGCAAGAAATTA+TGG 0.315948 5:+16885795 MsG0580025317.01.T01:exon
TGACCAAGCGTTGTTTCCTT+TGG 0.326823 5:+16885070 MsG0580025317.01.T01:five_prime_UTR
AATGCTAAGGATCTGTTAAC+TGG 0.327320 5:-16888146 None:intergenic
GGATCAGGTTAGAGGAAATA+TGG 0.330222 5:+16889988 MsG0580025317.01.T01:three_prime_UTR
CTTGTTTACAGCAATAATCT+TGG 0.332047 5:+16888854 MsG0580025317.01.T01:CDS
GAAGAGGGACAAGAGCATTT+AGG 0.334874 5:-16888262 None:intergenic
ATCTTGCCGTTATGTATTCC+TGG 0.337261 5:+16888494 MsG0580025317.01.T01:CDS
GCCGTTACATCAGAGCTATT+TGG 0.344138 5:+16889398 MsG0580025317.01.T01:CDS
GCAAATAAGGATGGAAGCTT+TGG 0.351496 5:+16889963 MsG0580025317.01.T01:three_prime_UTR
AAAACAATCATAAGCATGTT+TGG 0.355071 5:-16889666 None:intergenic
GGACAGATAGCTCAATCTTT+AGG 0.355909 5:+16888875 MsG0580025317.01.T01:CDS
TTTCCTTTGGGAATCGAATC+TGG 0.356235 5:+16885083 MsG0580025317.01.T01:five_prime_UTR
GACCAAGCGTTGTTTCCTTT+GGG 0.360778 5:+16885071 MsG0580025317.01.T01:five_prime_UTR
TGATACTAATAGCAACAATA+TGG 0.363183 5:+16885839 MsG0580025317.01.T01:CDS
CTCATAACAAATATTCCAAT+TGG 0.383465 5:+16889452 MsG0580025317.01.T01:CDS
CTGCTTGGTGAAAACGGATA+TGG 0.383934 5:+16888674 MsG0580025317.01.T01:CDS
GCCAGCAAGATGAATGCAAT+TGG 0.384601 5:-16889293 None:intergenic
ATGTTTATTGCTGCTTCAAT+GGG 0.387895 5:+16886036 MsG0580025317.01.T01:CDS
GCTGCTTCAATGGGTCTTGT+TGG 0.391680 5:+16886045 MsG0580025317.01.T01:CDS
CTTTGGATGGATCAGGTTAG+AGG 0.394442 5:+16889980 MsG0580025317.01.T01:three_prime_UTR
AAGTTCTACTTTGCAAGGAC+AGG 0.411995 5:+16889242 MsG0580025317.01.T01:CDS
GCTATCTCGGCACCTGGTAA+TGG 0.412584 5:+16889521 MsG0580025317.01.T01:CDS
CAGCCGCGGTTCTTGTGAAA+AGG 0.416501 5:+16888780 MsG0580025317.01.T01:CDS
AGTGCTATGGCACTTAATAT+AGG 0.419939 5:+16889326 MsG0580025317.01.T01:CDS
GAATCGAATCTGGTATTTCC+CGG 0.423257 5:+16885093 MsG0580025317.01.T01:five_prime_UTR
GCTATTTCTGGACATTTGTA+TGG 0.429375 5:+16889588 MsG0580025317.01.T01:CDS
GCAGGATCAATTGGAAATGC+TGG 0.431793 5:+16888745 MsG0580025317.01.T01:CDS
AAGGAAGGTACCAGAAAATA+GGG 0.434118 5:-16886111 None:intergenic
GCTCCTTCCAAGGACGTATC+CGG 0.435125 5:-16885112 None:intergenic
TATTTCTGCGGAGGTACAAT+TGG 0.437385 5:+16888830 MsG0580025317.01.T01:CDS
CCAGCAAGATGAATGCAATT+GGG 0.438820 5:-16889292 None:intergenic
ATGGAAGCTTTGGATGGATC+AGG 0.452451 5:+16889973 MsG0580025317.01.T01:three_prime_UTR
TTTCTGGACATTTGTATGGT+GGG 0.453355 5:+16889592 MsG0580025317.01.T01:CDS
ATAAACATGACAAGAGAGAT+TGG 0.454947 5:-16886021 None:intergenic
GTAAGTATAACCAAGTTGAT+TGG 0.458189 5:-16885151 None:intergenic
GTGTTATCTATGCTAGAGAT+TGG 0.458698 5:+16888516 MsG0580025317.01.T01:CDS
AGTGACAACCCTTGTCCCTT+CGG 0.460857 5:-16890172 None:intergenic
AATATAGGAACTGCACTAAT+CGG 0.461447 5:+16889341 MsG0580025317.01.T01:CDS
TCTCTCTATCTCTTCTTCCT+AGG 0.464031 5:-16885777 None:intergenic
CAAGGCCTGCTTGGTGAAAA+CGG 0.464458 5:+16888668 MsG0580025317.01.T01:CDS
ACTTACTTTCGAATGTAGTC+AGG 0.465887 5:-16888974 None:intergenic
TGGGGATGTATATCTATCAT+AGG 0.468428 5:+16889611 MsG0580025317.01.T01:CDS
GTATTTCCCGGATACGTCCT+TGG 0.468451 5:+16885105 MsG0580025317.01.T01:five_prime_UTR
AGGAAGGAATGGAGAAGTGT+GGG 0.468789 5:-16885754 None:intergenic
GAGGAAGGAATGGAGAAGTG+TGG 0.470794 5:-16885755 None:intergenic
TGGAAGGAGCTCATTGTCAC+TGG 0.473919 5:+16885125 MsG0580025317.01.T01:five_prime_UTR
CAGTCGGTTGCGCTGAAATA+CGG 0.476009 5:-16889697 None:intergenic
AGATAGAGTTGATCTGATGA+AGG 0.476307 5:-16888236 None:intergenic
CTTCTCCATTCCTTCCTCCT+AGG 0.477741 5:+16885760 MsG0580025317.01.T01:five_prime_UTR
GCACTCACTGTGAGTTTCAA+TGG 0.479460 5:+16888170 MsG0580025317.01.T01:CDS
GTCTGATTCATTGGTATGCA+TGG 0.481027 5:+16889556 MsG0580025317.01.T01:CDS
AAGTTGATGAGGCAAAGATT+AGG 0.484771 5:-16888421 None:intergenic
CCATAGAGAAGGGATCCAAT+TGG 0.490493 5:-16889467 None:intergenic
CAAAGCAGCGCTCGGAGCAA+TGG 0.493468 5:+16888638 MsG0580025317.01.T01:CDS
AGTGACATGGGTAAAGTGTT+TGG 0.497761 5:+16885967 MsG0580025317.01.T01:CDS
TTCTGGACATTTGTATGGTG+GGG 0.499270 5:+16889593 MsG0580025317.01.T01:CDS
TGAAAGCAAGCGTCCAAAGA+AGG 0.499870 5:-16888945 None:intergenic
CGCGGTTCTTGTGAAAAGGT+TGG 0.500230 5:+16888784 MsG0580025317.01.T01:CDS
CTTAGCAACTGCAAGTGACA+TGG 0.505520 5:+16885954 MsG0580025317.01.T01:CDS
CTCCTTCCAAGGACGTATCC+GGG 0.505645 5:-16885111 None:intergenic
AAAGGCGGCTGGCGAAGAAT+CGG 0.506346 5:-16888308 None:intergenic
GGAGAATGAGTGTCTGATAA+AGG 0.510192 5:-16888326 None:intergenic
GAGGAGAGATATAGATTCAG+AGG 0.510231 5:+16889880 MsG0580025317.01.T01:three_prime_UTR
TCCAAATAGCTCTGATGTAA+CGG 0.511498 5:-16889399 None:intergenic
GCACTAATCGGTCTGAGCTC+AGG 0.513327 5:+16889353 MsG0580025317.01.T01:CDS
GGAGATGCTCAAGGCCTGCT+TGG 0.515078 5:+16888659 MsG0580025317.01.T01:CDS
TATATTTGAAATGGAACCGA+AGG 0.519238 5:+16890156 MsG0580025317.01.T01:three_prime_UTR
ATCCTAGCTTAATGTGATTG+AGG 0.519588 5:+16889861 MsG0580025317.01.T01:three_prime_UTR
TTATGATGCTAACGCTATCT+CGG 0.520363 5:+16889508 MsG0580025317.01.T01:CDS
TGAGTGGCTGCAGTATCTGT+TGG 0.525490 5:+16888084 MsG0580025317.01.T01:CDS
GAGCGCTGCTTTGACGCGTA+AGG 0.529395 5:-16888628 None:intergenic
TGATGACGTTATTGATGAGA+AGG 0.529841 5:-16886083 None:intergenic
ATTATTATGTTTCCATTACC+AGG 0.530316 5:-16889533 None:intergenic
CACAGTGAGTGCCAATGCTA+AGG 0.532501 5:-16888159 None:intergenic
GCAGCAAGTTCTACTTTGCA+AGG 0.536989 5:+16889237 MsG0580025317.01.T01:intron
GAAATGGAACCGAAGGGACA+AGG 0.537270 5:+16890163 MsG0580025317.01.T01:three_prime_UTR
GCAACATCGAGGCTCTACTT+TGG 0.539225 5:+16888452 MsG0580025317.01.T01:CDS
ACATCGAGGCTCTACTTTGG+TGG 0.541326 5:+16888455 MsG0580025317.01.T01:CDS
GATAGAGTTGATCTGATGAA+GGG 0.542870 5:-16888235 None:intergenic
TTCTTCCTAGGAGGAAGGAA+TGG 0.543522 5:-16885765 None:intergenic
TGATTGACACTCAAACTGTC+AGG 0.546140 5:-16889422 None:intergenic
TTCCCAAAGGAAACAACGCT+TGG 0.546305 5:-16885073 None:intergenic
TTCCCGGATACGTCCTTGGA+AGG 0.547417 5:+16885109 MsG0580025317.01.T01:five_prime_UTR
CTCTATCTCTTCTTCCTAGG+AGG 0.550992 5:-16885774 None:intergenic
TATTATATTGCATATTTCTG+CGG 0.551894 5:+16888818 MsG0580025317.01.T01:CDS
ATTTCTGGACATTTGTATGG+TGG 0.553978 5:+16889591 MsG0580025317.01.T01:CDS
AAAGTAGAAGCAAATAAGGA+TGG 0.554199 5:+16889954 MsG0580025317.01.T01:three_prime_UTR
TTTCATATTTGCAGCTGCAG+TGG 0.554888 5:+16889376 MsG0580025317.01.T01:CDS
TCACTGGAGTCCAATCAACT+TGG 0.558485 5:+16885141 MsG0580025317.01.T01:five_prime_UTR
TTACGCGTCAAAGCAGCGCT+CGG 0.560674 5:+16888630 MsG0580025317.01.T01:CDS
TTTGCTTCTATTCATCACAA+TGG 0.561810 5:+16889919 MsG0580025317.01.T01:three_prime_UTR
CAGGATCAATTGGAAATGCT+GGG 0.562484 5:+16888746 MsG0580025317.01.T01:CDS
AAGATGAATGCAATTGGGGT+TGG 0.563489 5:-16889287 None:intergenic
CTCCTCAATCACATTAAGCT+AGG 0.565566 5:-16889863 None:intergenic
ATCTCTTCTTCCTAGGAGGA+AGG 0.568134 5:-16885770 None:intergenic
CAGCCATAAAACCATAGAGA+AGG 0.568142 5:-16889478 None:intergenic
GAGTGTCTGATAAAGGCGGC+TGG 0.575630 5:-16888319 None:intergenic
CTGCGATCGAAGTGAGAAGA+GGG 0.581355 5:-16888277 None:intergenic
GGCTTCATCAGAAAGTGCTA+TGG 0.581375 5:+16889313 MsG0580025317.01.T01:CDS
CGGAGCAATGGAGATGCTCA+AGG 0.582212 5:+16888650 MsG0580025317.01.T01:CDS
AGTGAGCAAGAAATTATGGC+AGG 0.582323 5:+16885799 MsG0580025317.01.T01:exon
ATAAGGATGGAAGCTTTGGA+TGG 0.583608 5:+16889967 MsG0580025317.01.T01:three_prime_UTR
CAGCAAGATGAATGCAATTG+GGG 0.585987 5:-16889291 None:intergenic
AGTTCTACTTTGCAAGGACA+GGG 0.588322 5:+16889243 MsG0580025317.01.T01:CDS
AGTTAACAGATCCTTAGCAT+TGG 0.591254 5:+16888148 MsG0580025317.01.T01:CDS
GAGTTCTGACGAGCGGCGTG+TGG 0.594825 5:-16888347 None:intergenic
TGGGGTTGGTAAAAGTGCAA+TGG 0.599533 5:-16889273 None:intergenic
ACACGCCGCTCGTCAGAACT+CGG 0.602335 5:+16888349 MsG0580025317.01.T01:CDS
TCGTAACTTCTGACAACGCA+AGG 0.603324 5:+16889722 MsG0580025317.01.T01:exon
GTGACAATGAGCTCCTTCCA+AGG 0.603801 5:-16885122 None:intergenic
GGAGAAGTGTGGGAGAGAAG+TGG 0.604549 5:-16885744 None:intergenic
ATATGGATTCAAGCATTCAC+AGG 0.605178 5:+16885856 MsG0580025317.01.T01:CDS
ACATGGGTAAAGTGTTTGGT+TGG 0.605679 5:+16885971 MsG0580025317.01.T01:CDS
TATATTGCATATTTCTGCGG+AGG 0.606294 5:+16888821 MsG0580025317.01.T01:CDS
GCTAACGCTATCTCGGCACC+TGG 0.610840 5:+16889515 MsG0580025317.01.T01:CDS
TGCTTCATCAGAAGTTGATG+AGG 0.612975 5:-16888432 None:intergenic
GAGTCGATGTTCTATAACTG+TGG 0.613515 5:-16888898 None:intergenic
TTAGCAACTGCAAGTGACAT+GGG 0.619414 5:+16885955 MsG0580025317.01.T01:CDS
ATGCTAAGGATCTGTTAACT+GGG 0.628103 5:-16888145 None:intergenic
TTTGGTGGCAGAGTTAAGCA+AGG 0.628440 5:+16889804 MsG0580025317.01.T01:three_prime_UTR
AGCCATAAAACCATAGAGAA+GGG 0.631472 5:-16889477 None:intergenic
ATAACACCAGGAATACATAA+CGG 0.632522 5:-16888500 None:intergenic
AAATGGAACCGAAGGGACAA+GGG 0.636240 5:+16890164 MsG0580025317.01.T01:three_prime_UTR
TCTCTAGCATAGATAACACC+AGG 0.642863 5:-16888512 None:intergenic
ATACCAGATTCGATTCCCAA+AGG 0.658833 5:-16885086 None:intergenic
TCTGATTCATTGGTATGCAT+GGG 0.660016 5:+16889557 MsG0580025317.01.T01:CDS
AAGTGTGGGAGAGAAGTGGT+TGG 0.660798 5:-16885740 None:intergenic
GCTGCGATCGAAGTGAGAAG+AGG 0.667471 5:-16888278 None:intergenic
GTCAGAAGTTACGACACAGT+CGG 0.667493 5:-16889713 None:intergenic
TCACAGTCTCAAATTTCACA+AGG 0.668385 5:-16890013 None:intergenic
TCTACTTTGCAAGGACAGGG+TGG 0.676179 5:+16889246 MsG0580025317.01.T01:CDS
ATATTTGAAATGGAACCGAA+GGG 0.679884 5:+16890157 MsG0580025317.01.T01:three_prime_UTR
GGGAGAAGAACATTCAGCCG+CGG 0.691345 5:+16888766 MsG0580025317.01.T01:CDS
GGTACTCAGAGAGCAAAGAG+TGG 0.699879 5:+16888695 MsG0580025317.01.T01:CDS
TATAACCGAGTTCTGACGAG+CGG 0.712307 5:-16888354 None:intergenic
CTTCTGATGAAGCAACATCG+AGG 0.728233 5:+16888441 MsG0580025317.01.T01:CDS
GAATGAGTGTCTGATAAAGG+CGG 0.748464 5:-16888323 None:intergenic
GAAGGCTCGGATGAACAGCG+CGG 0.798034 5:-16888544 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTTTTTTTAATTTAT+GGG - Chr5:16886431-16886450 None:intergenic 0.0%
!!! TAAATATTTTTTTTAATTTA+TGG - Chr5:16886432-16886451 None:intergenic 0.0%
!! AGTCTTTATTAATTAATTAA+TGG + Chr5:16886193-16886212 MsG0580025317.01.T01:intron 10.0%
!! ATAATAACATTAATAATATG+TGG - Chr5:16887221-16887240 None:intergenic 10.0%
!! TGAAAAAAATATATTTGAAA+TGG + Chr5:16890147-16890166 MsG0580025317.01.T01:three_prime_UTR 10.0%
!!! AAAAATAAGAGTAAAATTTT+AGG + Chr5:16887063-16887082 MsG0580025317.01.T01:intron 10.0%
!!! AATGATAAAGAATATTTTAA+AGG - Chr5:16886625-16886644 None:intergenic 10.0%
!!! TATTTTTTTATTCAGAAAAT+AGG - Chr5:16887050-16887069 None:intergenic 10.0%
!!! TTAAAATATTCTTTTTTTGA+TGG + Chr5:16886591-16886610 MsG0580025317.01.T01:intron 10.0%
!! TAAAAATTAGTAATTACGTA+GGG + Chr5:16886269-16886288 MsG0580025317.01.T01:intron 15.0%
!! TAAAATTGTACATATATGAT+GGG + Chr5:16889189-16889208 MsG0580025317.01.T01:intron 15.0%
!! TTAAAAATTAGTAATTACGT+AGG + Chr5:16886268-16886287 MsG0580025317.01.T01:intron 15.0%
!! TTAAAATTGTACATATATGA+TGG + Chr5:16889188-16889207 MsG0580025317.01.T01:intron 15.0%
!!! AAAAATGAACATTTTTTGAA+AGG + Chr5:16886790-16886809 MsG0580025317.01.T01:intron 15.0%
!!! ATGAAGTTTTTTTTTTTTGA+AGG - Chr5:16885523-16885542 None:intergenic 15.0%
!!! CGAATATATTTTCAAAAAAT+TGG - Chr5:16886842-16886861 None:intergenic 15.0%
!!! TATCTCTTTTTTTTTTTTGA+AGG - Chr5:16885275-16885294 None:intergenic 15.0%
!!! TTTTTTTTTATAGGTTAAGT+TGG - Chr5:16887297-16887316 None:intergenic 15.0%
!! AAAGATATCTCTATTAAGTT+AGG - Chr5:16885246-16885265 None:intergenic 20.0%
!! CATCTATGTTAGTATTTATA+TGG - Chr5:16887623-16887642 None:intergenic 20.0%
!! GTTATACTTACATTTCTTTA+TGG + Chr5:16885163-16885182 MsG0580025317.01.T01:intron 20.0%
!!! TATTATATTGCATATTTCTG+CGG + Chr5:16888818-16888837 MsG0580025317.01.T01:CDS 20.0%
!!! TTTCTTATGTTTTGAATGAA+TGG + Chr5:16887020-16887039 MsG0580025317.01.T01:intron 20.0%
! AAAACAATCATAAGCATGTT+TGG - Chr5:16889669-16889688 None:intergenic 25.0%
! AAAAGGACCTAAAAATGAAA+AGG - Chr5:16887128-16887147 None:intergenic 25.0%
! AAACTGAAATGAGAAAAAAG+AGG - Chr5:16886146-16886165 None:intergenic 25.0%
! AACTGAAATGAGAAAAAAGA+GGG - Chr5:16886145-16886164 None:intergenic 25.0%
! ACATTAATAATATGTGGACT+TGG - Chr5:16887215-16887234 None:intergenic 25.0%
! ATTATTATGTTTCCATTACC+AGG - Chr5:16889536-16889555 None:intergenic 25.0%
! ATTCAAAGTAGAAGCAAATA+AGG + Chr5:16889950-16889969 MsG0580025317.01.T01:three_prime_UTR 25.0%
! CAAGTTCTTAGTTGTATTAT+AGG + Chr5:16887939-16887958 MsG0580025317.01.T01:intron 25.0%
! CATAATAATGTCTGATTCAT+TGG + Chr5:16889547-16889566 MsG0580025317.01.T01:CDS 25.0%
! CTCATAACAAATATTCCAAT+TGG + Chr5:16889452-16889471 MsG0580025317.01.T01:CDS 25.0%
! GTGTCGCAAAATTAAAAAAA+GGG + Chr5:16885463-16885482 MsG0580025317.01.T01:intron 25.0%
! GTTAATTAAGTAACCACTAT+TGG + Chr5:16886225-16886244 MsG0580025317.01.T01:intron 25.0%
! TCGAAACATTACTATTTGAA+AGG + Chr5:16887775-16887794 MsG0580025317.01.T01:intron 25.0%
! TGATACTAATAGCAACAATA+TGG + Chr5:16885839-16885858 MsG0580025317.01.T01:CDS 25.0%
! TGTGTCGCAAAATTAAAAAA+AGG + Chr5:16885462-16885481 MsG0580025317.01.T01:intron 25.0%
! TTCTGAATTATAGGGAAAAT+GGG + Chr5:16887403-16887422 MsG0580025317.01.T01:intron 25.0%
! TTTATCTCTCGATCTTAATT+TGG - Chr5:16887439-16887458 None:intergenic 25.0%
!! ACATGTATAGAACATGATTT+TGG + Chr5:16889786-16889805 MsG0580025317.01.T01:three_prime_UTR 25.0%
!! AGGGTGTATTGTTATAATTT+TGG + Chr5:16885482-16885501 MsG0580025317.01.T01:intron 25.0%
!! ATAGAAATGCAATTTTCGAT+AGG - Chr5:16885331-16885350 None:intergenic 25.0%
!! CAAAAAGCTTTTAATAGTAG+TGG + Chr5:16886539-16886558 MsG0580025317.01.T01:intron 25.0%
!! GTGTATTGTTATAATTTTGG+TGG + Chr5:16885485-16885504 MsG0580025317.01.T01:intron 25.0%
!! GTTTTCTTAATGAAAAAGAC+TGG + Chr5:16889136-16889155 MsG0580025317.01.T01:intron 25.0%
!! TCTAACATTGAACATTTTAG+CGG + Chr5:16888379-16888398 MsG0580025317.01.T01:CDS 25.0%
!!! CTTTTTTTAGCTATTACCTA+TGG - Chr5:16885380-16885399 None:intergenic 25.0%
!!! TGAATTGTGACAAGTTTTTT+GGG + Chr5:16888723-16888742 MsG0580025317.01.T01:CDS 25.0%
AAAAAAGAGGGTAAAGGAAA+AGG - Chr5:16886133-16886152 None:intergenic 30.0%
AAAATAGCATACACCAATAG+TGG - Chr5:16886241-16886260 None:intergenic 30.0%
AAAGTAGAAGCAAATAAGGA+TGG + Chr5:16889954-16889973 MsG0580025317.01.T01:three_prime_UTR 30.0%
AAGTGGAAAAGAGAAGATTA+AGG + Chr5:16886762-16886781 MsG0580025317.01.T01:intron 30.0%
AATATAGGAACTGCACTAAT+CGG + Chr5:16889341-16889360 MsG0580025317.01.T01:CDS 30.0%
AATGAGAAAAAAGAGGGTAA+AGG - Chr5:16886139-16886158 None:intergenic 30.0%
AGGAACAATGCACTTATAAT+GGG + Chr5:16886882-16886901 MsG0580025317.01.T01:intron 30.0%
ATAAACATGACAAGAGAGAT+TGG - Chr5:16886024-16886043 None:intergenic 30.0%
ATAACACCAGGAATACATAA+CGG - Chr5:16888503-16888522 None:intergenic 30.0%
CTATTACCTATGGAAAACAT+AGG - Chr5:16885370-16885389 None:intergenic 30.0%
CTTCTGAATTATAGGGAAAA+TGG + Chr5:16887402-16887421 MsG0580025317.01.T01:intron 30.0%
CTTGTTTACAGCAATAATCT+TGG + Chr5:16888854-16888873 MsG0580025317.01.T01:CDS 30.0%
GTATGAATGGTTGTTATAGT+GGG + Chr5:16886342-16886361 MsG0580025317.01.T01:intron 30.0%
TATGAATGGTTGTTATAGTG+GGG + Chr5:16886343-16886362 MsG0580025317.01.T01:intron 30.0%
TCACAAGCTTCTGAATTATA+GGG + Chr5:16887395-16887414 MsG0580025317.01.T01:intron 30.0%
TTAGTAATTACGTAGGGTTA+TGG + Chr5:16886275-16886294 MsG0580025317.01.T01:intron 30.0%
TTCACAAGCTTCTGAATTAT+AGG + Chr5:16887394-16887413 MsG0580025317.01.T01:intron 30.0%
TTTGCTTCTATTCATCACAA+TGG + Chr5:16889919-16889938 MsG0580025317.01.T01:three_prime_UTR 30.0%
! ATATTTGAAATGGAACCGAA+GGG + Chr5:16890157-16890176 MsG0580025317.01.T01:three_prime_UTR 30.0%
! ATGTTTATTGCTGCTTCAAT+GGG + Chr5:16886036-16886055 MsG0580025317.01.T01:CDS 30.0%
! ATTTTTCTTGCACATGTCTA+CGG + Chr5:16885541-16885560 MsG0580025317.01.T01:intron 30.0%
! TATATTTGAAATGGAACCGA+AGG + Chr5:16890156-16890175 MsG0580025317.01.T01:three_prime_UTR 30.0%
! TGTATAGAACATGATTTTGG+TGG + Chr5:16889789-16889808 MsG0580025317.01.T01:three_prime_UTR 30.0%
! TTGTGAAAAGGTTGGATTTT+TGG + Chr5:16888792-16888811 MsG0580025317.01.T01:CDS 30.0%
!! AACATTTTAGCGGTTTTTAC+AGG + Chr5:16888389-16888408 MsG0580025317.01.T01:CDS 30.0%
!! ACTTTGAGTAGTTTTTGAAG+TGG + Chr5:16886745-16886764 MsG0580025317.01.T01:intron 30.0%
!! CTTTGACTTTTGTATGTTTC+AGG + Chr5:16888043-16888062 MsG0580025317.01.T01:intron 30.0%
!! GTAAGTATAACCAAGTTGAT+TGG - Chr5:16885154-16885173 None:intergenic 30.0%
!!! GTGAATTGTGACAAGTTTTT+TGG + Chr5:16888722-16888741 MsG0580025317.01.T01:CDS 30.0%
AAGAATCTACTAGTACTAGG+AGG + Chr5:16886862-16886881 MsG0580025317.01.T01:intron 35.0%
AATGCTAAGGATCTGTTAAC+TGG - Chr5:16888149-16888168 None:intergenic 35.0%
ACTATTTGAAAGGACTCTAG+TGG + Chr5:16887785-16887804 MsG0580025317.01.T01:intron 35.0%
ACTTACTTTCGAATGTAGTC+AGG - Chr5:16888977-16888996 None:intergenic 35.0%
AGAGAGTGAGCAAGAAATTA+TGG + Chr5:16885795-16885814 MsG0580025317.01.T01:exon 35.0%
AGCCATAAAACCATAGAGAA+GGG - Chr5:16889480-16889499 None:intergenic 35.0%
AGTGCTATGGCACTTAATAT+AGG + Chr5:16889326-16889345 MsG0580025317.01.T01:CDS 35.0%
AGTTAACAGATCCTTAGCAT+TGG + Chr5:16888148-16888167 MsG0580025317.01.T01:CDS 35.0%
ATATGGATTCAAGCATTCAC+AGG + Chr5:16885856-16885875 MsG0580025317.01.T01:CDS 35.0%
ATCCTAGCTTAATGTGATTG+AGG + Chr5:16889861-16889880 MsG0580025317.01.T01:three_prime_UTR 35.0%
ATGCTAAGGATCTGTTAACT+GGG - Chr5:16888148-16888167 None:intergenic 35.0%
CCTCTAAGTTAAGATTCTGT+GGG + Chr5:16885621-16885640 MsG0580025317.01.T01:intron 35.0%
CTCTAAGTTAAGATTCTGTG+GGG + Chr5:16885622-16885641 MsG0580025317.01.T01:intron 35.0%
GAGGAACAATGCACTTATAA+TGG + Chr5:16886881-16886900 MsG0580025317.01.T01:intron 35.0%
GGGACTGACAGTAAATATTT+CGG + Chr5:16889209-16889228 MsG0580025317.01.T01:intron 35.0%
GGTATGAATGGTTGTTATAG+TGG + Chr5:16886341-16886360 MsG0580025317.01.T01:intron 35.0%
GTGTTATCTATGCTAGAGAT+TGG + Chr5:16888516-16888535 MsG0580025317.01.T01:CDS 35.0%
TAATTACGTAGGGTTATGGA+GGG + Chr5:16886279-16886298 MsG0580025317.01.T01:intron 35.0%
TAGTACAAAGTAGGTTCAAG+AGG + Chr5:16887811-16887830 MsG0580025317.01.T01:intron 35.0%
TAGTGGAGATAGTACAAAGT+AGG + Chr5:16887802-16887821 MsG0580025317.01.T01:intron 35.0%
TATTCATCGTTCTCCTTCTT+TGG + Chr5:16888932-16888951 MsG0580025317.01.T01:CDS 35.0%
TCACAGTCTCAAATTTCACA+AGG - Chr5:16890016-16890035 None:intergenic 35.0%
TCGAAGAATCTACTAGTACT+AGG + Chr5:16886859-16886878 MsG0580025317.01.T01:intron 35.0%
TCTGATTCATTGGTATGCAT+GGG + Chr5:16889557-16889576 MsG0580025317.01.T01:CDS 35.0%
TGGGGATGTATATCTATCAT+AGG + Chr5:16889611-16889630 MsG0580025317.01.T01:CDS 35.0%
TTATGATGCTAACGCTATCT+CGG + Chr5:16889508-16889527 MsG0580025317.01.T01:CDS 35.0%
TTGAACGTACACAGTTGAAA+AGG - Chr5:16887145-16887164 None:intergenic 35.0%
TTTCTGGACATTTGTATGGT+GGG + Chr5:16889592-16889611 MsG0580025317.01.T01:CDS 35.0%
! AGATAGAGTTGATCTGATGA+AGG - Chr5:16888239-16888258 None:intergenic 35.0%
! ATAGATGTCCGAGTTTTCAA+GGG + Chr5:16887636-16887655 MsG0580025317.01.T01:intron 35.0%
! ATTTCTGGACATTTGTATGG+TGG + Chr5:16889591-16889610 MsG0580025317.01.T01:CDS 35.0%
! CATGTTTATTGCTGCTTCAA+TGG + Chr5:16886035-16886054 MsG0580025317.01.T01:CDS 35.0%
! GATAGAGTTGATCTGATGAA+GGG - Chr5:16888238-16888257 None:intergenic 35.0%
! TATATTGCATATTTCTGCGG+AGG + Chr5:16888821-16888840 MsG0580025317.01.T01:CDS 35.0%
! TGATGACGTTATTGATGAGA+AGG - Chr5:16886086-16886105 None:intergenic 35.0%
! TGCAATCCTATGTTTTCCAT+AGG + Chr5:16885361-16885380 MsG0580025317.01.T01:intron 35.0%
!! AAAGGAAGGTACCAGAAAAT+AGG - Chr5:16886115-16886134 None:intergenic 35.0%
!! AAGGAAGGTACCAGAAAATA+GGG - Chr5:16886114-16886133 None:intergenic 35.0%
!! AAGTTGATGAGGCAAAGATT+AGG - Chr5:16888424-16888443 None:intergenic 35.0%
!! ATCCCTTCTCTATGGTTTTA+TGG + Chr5:16889475-16889494 MsG0580025317.01.T01:CDS 35.0%
!! CACACGTCCTTTTCATTTTT+AGG + Chr5:16887118-16887137 MsG0580025317.01.T01:intron 35.0%
!! GCTATTTCTGGACATTTGTA+TGG + Chr5:16889588-16889607 MsG0580025317.01.T01:CDS 35.0%
!! TATAATGGGTGTTAGATGTG+TGG + Chr5:16886896-16886915 MsG0580025317.01.T01:intron 35.0%
!! TCCAAATAGCTCTGATGTAA+CGG - Chr5:16889402-16889421 None:intergenic 35.0%
!! TGAGTTCTAGAATCAGCATT+TGG - Chr5:16887191-16887210 None:intergenic 35.0%
!!! AAGGACGTGTGAGATTTTTT+AGG - Chr5:16887109-16887128 None:intergenic 35.0%
!!! TTTTTTCTGTGTCTGTTGAG+TGG + Chr5:16888068-16888087 MsG0580025317.01.T01:CDS 35.0%
AAAACTCAGTATCCGATCCA+AGG - Chr5:16887695-16887714 None:intergenic 40.0%
AAACCAAGCCACGTATAAAG+AGG + Chr5:16885703-16885722 MsG0580025317.01.T01:intron 40.0%
AAGAGGGTAAAGGAAAAGGA+AGG - Chr5:16886129-16886148 None:intergenic 40.0%
AAGATGAATGCAATTGGGGT+TGG - Chr5:16889290-16889309 None:intergenic 40.0%
AAGTTCTACTTTGCAAGGAC+AGG + Chr5:16889242-16889261 MsG0580025317.01.T01:CDS 40.0%
AATTACGTAGGGTTATGGAG+GGG + Chr5:16886280-16886299 MsG0580025317.01.T01:intron 40.0%
AGTGAGCAAGAAATTATGGC+AGG + Chr5:16885799-16885818 MsG0580025317.01.T01:exon 40.0%
AGTTCTACTTTGCAAGGACA+GGG + Chr5:16889243-16889262 MsG0580025317.01.T01:CDS 40.0%
ATACCAGATTCGATTCCCAA+AGG - Chr5:16885089-16885108 None:intergenic 40.0%
ATCTTGCCGTTATGTATTCC+TGG + Chr5:16888494-16888513 MsG0580025317.01.T01:CDS 40.0%
CAGCAAGATGAATGCAATTG+GGG - Chr5:16889294-16889313 None:intergenic 40.0%
CAGCCATAAAACCATAGAGA+AGG - Chr5:16889481-16889500 None:intergenic 40.0%
CAGGATCAATTGGAAATGCT+GGG + Chr5:16888746-16888765 MsG0580025317.01.T01:CDS 40.0%
CAGTTGTTCTCTTGACTGAT+GGG + Chr5:16886307-16886326 MsG0580025317.01.T01:intron 40.0%
CATAGAGTTGCAACATCTAG+AGG + Chr5:16887990-16888009 MsG0580025317.01.T01:intron 40.0%
CCAGCAAGATGAATGCAATT+GGG - Chr5:16889295-16889314 None:intergenic 40.0%
CCCACAGAATCTTAACTTAG+AGG - Chr5:16885624-16885643 None:intergenic 40.0%
CTCCTCAATCACATTAAGCT+AGG - Chr5:16889866-16889885 None:intergenic 40.0%
GAATCGAATCTGGTATTTCC+CGG + Chr5:16885093-16885112 MsG0580025317.01.T01:five_prime_UTR 40.0%
GAATGAGTGTCTGATAAAGG+CGG - Chr5:16888326-16888345 None:intergenic 40.0%
GAGGAGAGATATAGATTCAG+AGG + Chr5:16889880-16889899 MsG0580025317.01.T01:three_prime_UTR 40.0%
GAGTCGATGTTCTATAACTG+TGG - Chr5:16888901-16888920 None:intergenic 40.0%
GCAAATAAGGATGGAAGCTT+TGG + Chr5:16889963-16889982 MsG0580025317.01.T01:three_prime_UTR 40.0%
GCCTCTAAGTTAAGATTCTG+TGG + Chr5:16885620-16885639 MsG0580025317.01.T01:intron 40.0%
GGACAGATAGCTCAATCTTT+AGG + Chr5:16888875-16888894 MsG0580025317.01.T01:CDS 40.0%
GGAGAAGCGGATATCTTAAA+TGG + Chr5:16887832-16887851 MsG0580025317.01.T01:intron 40.0%
GGAGAATGAGTGTCTGATAA+AGG - Chr5:16888329-16888348 None:intergenic 40.0%
GGATCAGGTTAGAGGAAATA+TGG + Chr5:16889988-16890007 MsG0580025317.01.T01:three_prime_UTR 40.0%
GTAATTACGTAGGGTTATGG+AGG + Chr5:16886278-16886297 MsG0580025317.01.T01:intron 40.0%
GTCTGATTCATTGGTATGCA+TGG + Chr5:16889556-16889575 MsG0580025317.01.T01:CDS 40.0%
TCAGTTGTTCTCTTGACTGA+TGG + Chr5:16886306-16886325 MsG0580025317.01.T01:intron 40.0%
TCTCTAGCATAGATAACACC+AGG - Chr5:16888515-16888534 None:intergenic 40.0%
TCTCTCTATCTCTTCTTCCT+AGG - Chr5:16885780-16885799 None:intergenic 40.0%
TGATTGACACTCAAACTGTC+AGG - Chr5:16889425-16889444 None:intergenic 40.0%
TGGCAGGACAATCAAGAAAA+TGG + Chr5:16885815-16885834 MsG0580025317.01.T01:CDS 40.0%
TTAGCAACTGCAAGTGACAT+GGG + Chr5:16885955-16885974 MsG0580025317.01.T01:CDS 40.0%
TTCAACTGTGTACGTTCAAC+TGG + Chr5:16887146-16887165 MsG0580025317.01.T01:intron 40.0%
TTCTGGACATTTGTATGGTG+GGG + Chr5:16889593-16889612 MsG0580025317.01.T01:CDS 40.0%
TTTCATATTTGCAGCTGCAG+TGG + Chr5:16889376-16889395 MsG0580025317.01.T01:CDS 40.0%
! ACATGGGTAAAGTGTTTGGT+TGG + Chr5:16885971-16885990 MsG0580025317.01.T01:CDS 40.0%
! AGTGACATGGGTAAAGTGTT+TGG + Chr5:16885967-16885986 MsG0580025317.01.T01:CDS 40.0%
! CATAGATGTCCGAGTTTTCA+AGG + Chr5:16887635-16887654 MsG0580025317.01.T01:intron 40.0%
! CATCACTTTGCCCTATTTTC+TGG + Chr5:16886101-16886120 MsG0580025317.01.T01:CDS 40.0%
! TATTTCTGCGGAGGTACAAT+TGG + Chr5:16888830-16888849 MsG0580025317.01.T01:CDS 40.0%
! TTTCCTTTGGGAATCGAATC+TGG + Chr5:16885083-16885102 MsG0580025317.01.T01:five_prime_UTR 40.0%
!! AAAGTGTTTGGTTGGTCTTC+TGG + Chr5:16885979-16885998 MsG0580025317.01.T01:CDS 40.0%
!! ATAAGGATGGAAGCTTTGGA+TGG + Chr5:16889967-16889986 MsG0580025317.01.T01:three_prime_UTR 40.0%
!! GTTAAGTTGGTTGAGTTCTG+TGG - Chr5:16887284-16887303 None:intergenic 40.0%
!! TAGATGTCCGAGTTTTCAAG+GGG + Chr5:16887637-16887656 MsG0580025317.01.T01:intron 40.0%
!! TCAATGGGTCTTGTTGGTTA+TGG + Chr5:16886051-16886070 MsG0580025317.01.T01:CDS 40.0%
!! TGCTTCATCAGAAGTTGATG+AGG - Chr5:16888435-16888454 None:intergenic 40.0%
!!! GACGTGTGAGATTTTTTAGG+AGG - Chr5:16887106-16887125 None:intergenic 40.0%
!!! GTTTTTTGGGCAGGATCAAT+TGG + Chr5:16888736-16888755 MsG0580025317.01.T01:CDS 40.0%
!!! TTGTGACAAGTTTTTTGGGC+AGG + Chr5:16888727-16888746 MsG0580025317.01.T01:CDS 40.0%
AAATGGAACCGAAGGGACAA+GGG + Chr5:16890164-16890183 MsG0580025317.01.T01:three_prime_UTR 45.0%
AGTAGGTTCAAGAGGAGAAG+CGG + Chr5:16887819-16887838 MsG0580025317.01.T01:intron 45.0%
ATCGTTGCACAGCAAATAGC+TGG - Chr5:16886925-16886944 None:intergenic 45.0%
ATCTCTTCTTCCTAGGAGGA+AGG - Chr5:16885773-16885792 None:intergenic 45.0%
ATTGGTCCCCTCGAATTAGT+CGG + Chr5:16887668-16887687 MsG0580025317.01.T01:intron 45.0%
CCAATTGGATCCCTTCTCTA+TGG + Chr5:16889467-16889486 MsG0580025317.01.T01:CDS 45.0%
CCATAGAGAAGGGATCCAAT+TGG - Chr5:16889470-16889489 None:intergenic 45.0%
CCCAATTGCATTCATCTTGC+TGG + Chr5:16889292-16889311 MsG0580025317.01.T01:CDS 45.0%
CGTGATTTGACCACAGAGTT+CGG - Chr5:16889087-16889106 None:intergenic 45.0%
CTCTATCTCTTCTTCCTAGG+AGG - Chr5:16885777-16885796 None:intergenic 45.0%
CTTAGCAACTGCAAGTGACA+TGG + Chr5:16885954-16885973 MsG0580025317.01.T01:CDS 45.0%
CTTCTGATGAAGCAACATCG+AGG + Chr5:16888441-16888460 MsG0580025317.01.T01:CDS 45.0%
CTTTGGATGGATCAGGTTAG+AGG + Chr5:16889980-16889999 MsG0580025317.01.T01:three_prime_UTR 45.0%
GAATTAGTCGGTCCTTGGAT+CGG + Chr5:16887680-16887699 MsG0580025317.01.T01:intron 45.0%
GCACTCACTGTGAGTTTCAA+TGG + Chr5:16888170-16888189 MsG0580025317.01.T01:CDS 45.0%
GCAGCAAGTTCTACTTTGCA+AGG + Chr5:16889237-16889256 MsG0580025317.01.T01:intron 45.0%
GCAGGATCAATTGGAAATGC+TGG + Chr5:16888745-16888764 MsG0580025317.01.T01:CDS 45.0%
GCCAGCAAGATGAATGCAAT+TGG - Chr5:16889296-16889315 None:intergenic 45.0%
GCCGTTACATCAGAGCTATT+TGG + Chr5:16889398-16889417 MsG0580025317.01.T01:CDS 45.0%
GTAAAATTGGCCGAACTCTG+TGG + Chr5:16889074-16889093 MsG0580025317.01.T01:intron 45.0%
GTCAGAAGTTACGACACAGT+CGG - Chr5:16889716-16889735 None:intergenic 45.0%
TCACTGGAGTCCAATCAACT+TGG + Chr5:16885141-16885160 MsG0580025317.01.T01:five_prime_UTR 45.0%
TCGTAACTTCTGACAACGCA+AGG + Chr5:16889722-16889741 MsG0580025317.01.T01:exon 45.0%
TGAAAGCAAGCGTCCAAAGA+AGG - Chr5:16888948-16888967 None:intergenic 45.0%
TGTGAGTGCCTCTTTATACG+TGG - Chr5:16885714-16885733 None:intergenic 45.0%
TTCCCAAAGGAAACAACGCT+TGG - Chr5:16885076-16885095 None:intergenic 45.0%
TTCTTCCTAGGAGGAAGGAA+TGG - Chr5:16885768-16885787 None:intergenic 45.0%
TTGTTCTCTTGACTGATGGG+TGG + Chr5:16886310-16886329 MsG0580025317.01.T01:intron 45.0%
TTTCTTGCACATGTCTACGG+TGG + Chr5:16885544-16885563 MsG0580025317.01.T01:intron 45.0%
! AGAATCAGCATTTGGAGCCT+GGG - Chr5:16887183-16887202 None:intergenic 45.0%
! AGGAAGGAATGGAGAAGTGT+GGG - Chr5:16885757-16885776 None:intergenic 45.0%
! ATTTGGAGCCTGGGAGTTAT+TGG - Chr5:16887174-16887193 None:intergenic 45.0%
! CAACCTTTTCACAAGAACCG+CGG - Chr5:16888786-16888805 None:intergenic 45.0%
! CATATCCGTTTTCACCAAGC+AGG - Chr5:16888676-16888695 None:intergenic 45.0%
! CTGCTTGGTGAAAACGGATA+TGG + Chr5:16888674-16888693 MsG0580025317.01.T01:CDS 45.0%
! GACCAAGCGTTGTTTCCTTT+GGG + Chr5:16885071-16885090 MsG0580025317.01.T01:five_prime_UTR 45.0%
! TAGAATCAGCATTTGGAGCC+TGG - Chr5:16887184-16887203 None:intergenic 45.0%
! TATAACCGAGTTCTGACGAG+CGG - Chr5:16888357-16888376 None:intergenic 45.0%
! TGACCAAGCGTTGTTTCCTT+TGG + Chr5:16885070-16885089 MsG0580025317.01.T01:five_prime_UTR 45.0%
! TGTTCTCTTGACTGATGGGT+GGG + Chr5:16886311-16886330 MsG0580025317.01.T01:intron 45.0%
! TTTGGAGCCTGGGAGTTATT+GGG - Chr5:16887173-16887192 None:intergenic 45.0%
! TTTGGTGGCAGAGTTAAGCA+AGG + Chr5:16889804-16889823 MsG0580025317.01.T01:three_prime_UTR 45.0%
!! AGATGTCCGAGTTTTCAAGG+GGG + Chr5:16887638-16887657 MsG0580025317.01.T01:intron 45.0%
!! AGCTAGAGTTTTCGACTCGA+AGG - Chr5:16888565-16888584 None:intergenic 45.0%
!! ATGGAAGCTTTGGATGGATC+AGG + Chr5:16889973-16889992 MsG0580025317.01.T01:three_prime_UTR 45.0%
!! GAAGAGGGACAAGAGCATTT+AGG - Chr5:16888265-16888284 None:intergenic 45.0%
!! GGCTTCATCAGAAAGTGCTA+TGG + Chr5:16889313-16889332 MsG0580025317.01.T01:CDS 45.0%
!! TGGGACGACAATGCTATTTC+TGG + Chr5:16889576-16889595 MsG0580025317.01.T01:CDS 45.0%
!! TGGGGTTGGTAAAAGTGCAA+TGG - Chr5:16889276-16889295 None:intergenic 45.0%
!!! ATTTTCATTATTTTTTTTAT+AGG - Chr5:16887340-16887359 None:intergenic 5.0%
!!! TATCATTATTTTTTTTTTAT+AGG - Chr5:16887306-16887325 None:intergenic 5.0%
!!! TTTTCATTATTTTTTTTATA+GGG - Chr5:16887339-16887358 None:intergenic 5.0%
AACTGGTCCCAATAACTCCC+AGG + Chr5:16887163-16887182 MsG0580025317.01.T01:intron 50.0%
AAGTGTGGGAGAGAAGTGGT+TGG - Chr5:16885743-16885762 None:intergenic 50.0%
ACATCGAGGCTCTACTTTGG+TGG + Chr5:16888455-16888474 MsG0580025317.01.T01:CDS 50.0%
AGTGACAACCCTTGTCCCTT+CGG - Chr5:16890175-16890194 None:intergenic 50.0%
CAAGGACCGACTAATTCGAG+GGG - Chr5:16887677-16887696 None:intergenic 50.0%
CACAGTGAGTGCCAATGCTA+AGG - Chr5:16888162-16888181 None:intergenic 50.0%
CAGTCGGTTGCGCTGAAATA+CGG - Chr5:16889700-16889719 None:intergenic 50.0%
CCAAGGACCGACTAATTCGA+GGG - Chr5:16887678-16887697 None:intergenic 50.0%
CGCGGTTCTTGTGAAAAGGT+TGG + Chr5:16888784-16888803 MsG0580025317.01.T01:CDS 50.0%
CTGCGATCGAAGTGAGAAGA+GGG - Chr5:16888280-16888299 None:intergenic 50.0%
CTTCTCCATTCCTTCCTCCT+AGG + Chr5:16885760-16885779 MsG0580025317.01.T01:five_prime_UTR 50.0%
GAAATGGAACCGAAGGGACA+AGG + Chr5:16890163-16890182 MsG0580025317.01.T01:three_prime_UTR 50.0%
GAGGAAGGAATGGAGAAGTG+TGG - Chr5:16885758-16885777 None:intergenic 50.0%
GCAACATCGAGGCTCTACTT+TGG + Chr5:16888452-16888471 MsG0580025317.01.T01:CDS 50.0%
GGTACTCAGAGAGCAAAGAG+TGG + Chr5:16888695-16888714 MsG0580025317.01.T01:CDS 50.0%
GTATTTCCCGGATACGTCCT+TGG + Chr5:16885105-16885124 MsG0580025317.01.T01:five_prime_UTR 50.0%
GTGACAATGAGCTCCTTCCA+AGG - Chr5:16885125-16885144 None:intergenic 50.0%
GTGCCTCTTTATACGTGGCT+TGG - Chr5:16885709-16885728 None:intergenic 50.0%
GTGGGTGGAGATGGTATGAA+TGG + Chr5:16886329-16886348 MsG0580025317.01.T01:intron 50.0%
GTTGCACAGCAAATAGCTGG+AGG - Chr5:16886922-16886941 None:intergenic 50.0%
TCCAAGGACCGACTAATTCG+AGG - Chr5:16887679-16887698 None:intergenic 50.0%
TCTACTTTGCAAGGACAGGG+TGG + Chr5:16889246-16889265 MsG0580025317.01.T01:CDS 50.0%
TGAGTGGCTGCAGTATCTGT+TGG + Chr5:16888084-16888103 MsG0580025317.01.T01:CDS 50.0%
TGGAAGGAGCTCATTGTCAC+TGG + Chr5:16885125-16885144 MsG0580025317.01.T01:five_prime_UTR 50.0%
TGGTTGAGTTCTGTGGACGT+TGG - Chr5:16887277-16887296 None:intergenic 50.0%
! CAAGGCCTGCTTGGTGAAAA+CGG + Chr5:16888668-16888687 MsG0580025317.01.T01:CDS 50.0%
! GCTGCTTCAATGGGTCTTGT+TGG + Chr5:16886045-16886064 MsG0580025317.01.T01:CDS 50.0%
!! GAGTTTTCGACTCGAAGGCT+CGG - Chr5:16888560-16888579 None:intergenic 50.0%
AAAGGCGGCTGGCGAAGAAT+CGG - Chr5:16888311-16888330 None:intergenic 55.0%
CAGCCGCGGTTCTTGTGAAA+AGG + Chr5:16888780-16888799 MsG0580025317.01.T01:CDS 55.0%
CCCTCGAATTAGTCGGTCCT+TGG + Chr5:16887675-16887694 MsG0580025317.01.T01:intron 55.0%
CGGAGCAATGGAGATGCTCA+AGG + Chr5:16888650-16888669 MsG0580025317.01.T01:CDS 55.0%
CTCCTTCCAAGGACGTATCC+GGG - Chr5:16885114-16885133 None:intergenic 55.0%
GAGTGTCTGATAAAGGCGGC+TGG - Chr5:16888322-16888341 None:intergenic 55.0%
GCACTAATCGGTCTGAGCTC+AGG + Chr5:16889353-16889372 MsG0580025317.01.T01:CDS 55.0%
GCTATCTCGGCACCTGGTAA+TGG + Chr5:16889521-16889540 MsG0580025317.01.T01:CDS 55.0%
GCTCCTTCCAAGGACGTATC+CGG - Chr5:16885115-16885134 None:intergenic 55.0%
GCTGCGATCGAAGTGAGAAG+AGG - Chr5:16888281-16888300 None:intergenic 55.0%
GGGAGAAGAACATTCAGCCG+CGG + Chr5:16888766-16888785 MsG0580025317.01.T01:CDS 55.0%
TTACGCGTCAAAGCAGCGCT+CGG + Chr5:16888630-16888649 MsG0580025317.01.T01:CDS 55.0%
TTCCCGGATACGTCCTTGGA+AGG + Chr5:16885109-16885128 MsG0580025317.01.T01:five_prime_UTR 55.0%
! GGAGAAGTGTGGGAGAGAAG+TGG - Chr5:16885747-16885766 None:intergenic 55.0%
! TCTCTTGACTGATGGGTGGG+TGG + Chr5:16886314-16886333 MsG0580025317.01.T01:intron 55.0%
!! TGTCCGAGTTTTCAAGGGGG+CGG + Chr5:16887641-16887660 MsG0580025317.01.T01:intron 55.0%
ACACGCCGCTCGTCAGAACT+CGG + Chr5:16888349-16888368 MsG0580025317.01.T01:CDS 60.0%
CAAAGCAGCGCTCGGAGCAA+TGG + Chr5:16888638-16888657 MsG0580025317.01.T01:CDS 60.0%
CCACCGCCCCCTTGAAAACT+CGG - Chr5:16887647-16887666 None:intergenic 60.0%
GAAGGCTCGGATGAACAGCG+CGG - Chr5:16888547-16888566 None:intergenic 60.0%
GCTAACGCTATCTCGGCACC+TGG + Chr5:16889515-16889534 MsG0580025317.01.T01:CDS 60.0%
GGAGATGCTCAAGGCCTGCT+TGG + Chr5:16888659-16888678 MsG0580025317.01.T01:CDS 60.0%
TTTCAAGGGGGCGGTGGGAT+TGG + Chr5:16887650-16887669 MsG0580025317.01.T01:intron 60.0%
! GACTGATGGGTGGGTGGAGA+TGG + Chr5:16886320-16886339 MsG0580025317.01.T01:intron 60.0%
! GAGCGCTGCTTTGACGCGTA+AGG - Chr5:16888631-16888650 None:intergenic 60.0%
!! CGAGTTTTCAAGGGGGCGGT+GGG + Chr5:16887645-16887664 MsG0580025317.01.T01:intron 60.0%
! GAGTTCTGACGAGCGGCGTG+TGG - Chr5:16888350-16888369 None:intergenic 65.0%
!! CCGAGTTTTCAAGGGGGCGG+TGG + Chr5:16887644-16887663 MsG0580025317.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 16885062 16890210 16885062 ID=MsG0580025317.01;Name=MsG0580025317.01
Chr5 mRNA 16885062 16890210 16885062 ID=MsG0580025317.01.T01;Parent=MsG0580025317.01;Name=MsG0580025317.01.T01;_AED=0.27;_eAED=0.30;_QI=192|0.33|0.25|0.75|0.66|0.5|4|483|573
Chr5 exon 16885062 16885162 16885062 ID=MsG0580025317.01.T01:exon:22787;Parent=MsG0580025317.01.T01
Chr5 exon 16885723 16886122 16885723 ID=MsG0580025317.01.T01:exon:22788;Parent=MsG0580025317.01.T01
Chr5 exon 16888065 16888990 16888065 ID=MsG0580025317.01.T01:exon:22789;Parent=MsG0580025317.01.T01
Chr5 exon 16889241 16890210 16889241 ID=MsG0580025317.01.T01:exon:22790;Parent=MsG0580025317.01.T01
Chr5 five_prime_UTR 16885062 16885162 16885062 ID=MsG0580025317.01.T01:five_prime_utr;Parent=MsG0580025317.01.T01
Chr5 five_prime_UTR 16885723 16885813 16885723 ID=MsG0580025317.01.T01:five_prime_utr;Parent=MsG0580025317.01.T01
Chr5 CDS 16885814 16886122 16885814 ID=MsG0580025317.01.T01:cds;Parent=MsG0580025317.01.T01
Chr5 CDS 16888065 16888990 16888065 ID=MsG0580025317.01.T01:cds;Parent=MsG0580025317.01.T01
Chr5 CDS 16889241 16889727 16889241 ID=MsG0580025317.01.T01:cds;Parent=MsG0580025317.01.T01
Chr5 three_prime_UTR 16889728 16890210 16889728 ID=MsG0580025317.01.T01:three_prime_utr;Parent=MsG0580025317.01.T01
Gene Sequence

>MsG0580025317.01.T01

ATGGCAGGACAATCAAGAAAATGGATGATACTAATAGCAACAATATGGATTCAAGCATTCACAGGAACAAATTTTGATTTCTCATCATACTCATCAACAATGAAATCTGTACTCAAAATCTCACAAGTGCAACTTAACTACTTAGCAACTGCAAGTGACATGGGTAAAGTGTTTGGTTGGTCTTCTGGTCTTGCTCTTATGTATCTTCCAATCTCTCTTGTCATGTTTATTGCTGCTTCAATGGGTCTTGTTGGTTATGGTCTTCAATTCCTTCTCATCAATAACGTCATCACTTTGCCCTATTTTCTGGTTTTTTTTCTGTGTCTGTTGAGTGGCTGCAGTATCTGTTGGTTCAACACAGTATGTTTTGTTCTCTGCATCAAAAACTTCCCAGTTAACAGATCCTTAGCATTGGCACTCACTGTGAGTTTCAATGGTGTAAGTGCAGCACTCTACACTCTAGCTGCAAATTCAATAAACCCTTCATCAGATCAACTCTATCTTCTCCTAAATGCTCTTGTCCCTCTTCTCACTTCGATCGCAGCATTACTTCCGATTCTTCGCCAGCCGCCTTTATCAGACACTCATTCTCCACACGCCGCTCGTCAGAACTCGGTTATATTTCTAACATTGAACATTTTAGCGGTTTTTACAGGAATTTATCTCCTAATCTTTGCCTCATCAACTTCTGATGAAGCAACATCGAGGCTCTACTTTGGTGGAGCTCTTGTACTTTTAATCTTGCCGTTATGTATTCCTGGTGTTATCTATGCTAGAGATTGGTTTCACCGCGCTGTTCATCCGAGCCTTCGAGTCGAAAACTCTAGCTTCATTCTTGTTCATGTTAATGATCTTGAGCTTCACAAAGAACTCCTTACGCGTCAAAGCAGCGCTCGGAGCAATGGAGATGCTCAAGGCCTGCTTGGTGAAAACGGATATGGTACTCAGAGAGCAAAGAGTGGTGATGTGAATTGTGACAAGTTTTTTGGGCAGGATCAATTGGAAATGCTGGGAGAAGAACATTCAGCCGCGGTTCTTGTGAAAAGGTTGGATTTTTGGCTTTATTATATTGCATATTTCTGCGGAGGTACAATTGGTCTTGTTTACAGCAATAATCTTGGACAGATAGCTCAATCTTTAGGCCACAGTTATAGAACATCGACTCTTGTGACGCTATATTCATCGTTCTCCTTCTTTGGACGCTTGCTTTCAGCTATGCCTGACTACATTCGAAACAAGTTCTACTTTGCAAGGACAGGGTGGCTAACCATTGCACTTTTACCAACCCCAATTGCATTCATCTTGCTGGCTTCATCAGAAAGTGCTATGGCACTTAATATAGGAACTGCACTAATCGGTCTGAGCTCAGGTTTCATATTTGCAGCTGCAGTGGCCGTTACATCAGAGCTATTTGGACCTGACAGTTTGAGTGTCAATCACAACATTCTCATAACAAATATTCCAATTGGATCCCTTCTCTATGGTTTTATGGCTGCAATAGTTTATGATGCTAACGCTATCTCGGCACCTGGTAATGGAAACATAATAATGTCTGATTCATTGGTATGCATGGGACGACAATGCTATTTCTGGACATTTGTATGGTGGGGATGTATATCTATCATAGGATTAATTTCTAGTTTGCTGCTATTCTTGAGAACCAAACATGCTTATGATTGTTTTGAGCGACACCGTATTTCAGCGCAACCGACTGTGTCGTAA

Protein sequence

>MsG0580025317.01.T01

MAGQSRKWMILIATIWIQAFTGTNFDFSSYSSTMKSVLKISQVQLNYLATASDMGKVFGWSSGLALMYLPISLVMFIAASMGLVGYGLQFLLINNVITLPYFLVFFLCLLSGCSICWFNTVCFVLCIKNFPVNRSLALALTVSFNGVSAALYTLAANSINPSSDQLYLLLNALVPLLTSIAALLPILRQPPLSDTHSPHAARQNSVIFLTLNILAVFTGIYLLIFASSTSDEATSRLYFGGALVLLILPLCIPGVIYARDWFHRAVHPSLRVENSSFILVHVNDLELHKELLTRQSSARSNGDAQGLLGENGYGTQRAKSGDVNCDKFFGQDQLEMLGEEHSAAVLVKRLDFWLYYIAYFCGGTIGLVYSNNLGQIAQSLGHSYRTSTLVTLYSSFSFFGRLLSAMPDYIRNKFYFARTGWLTIALLPTPIAFILLASSESAMALNIGTALIGLSSGFIFAAAVAVTSELFGPDSLSVNHNILITNIPIGSLLYGFMAAIVYDANAISAPGNGNIIMSDSLVCMGRQCYFWTFVWWGCISIIGLISSLLLFLRTKHAYDCFERHRISAQPTVS*