AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680032308.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032308.01.T01 MTR_6g038750 84.054 370 24 6 1 358 1 347 0.0 578
MsG0680032308.01.T01 MTR_4g026450 42.642 265 129 3 76 339 101 343 1.94e-62 213
MsG0680032308.01.T01 MTR_0053s0030 40.377 265 135 3 76 339 89 331 2.11e-53 188
MsG0680032308.01.T01 MTR_1g046620 37.736 265 142 4 76 339 133 375 2.07e-48 175
MsG0680032308.01.T01 MTR_1g009860 32.036 334 181 5 26 339 16 323 6.72e-44 160
MsG0680032308.01.T01 MTR_1g009860 32.036 334 181 5 26 339 16 323 1.33e-43 160
MsG0680032308.01.T01 MTR_3g094740 37.500 240 126 4 103 338 176 395 1.66e-40 152
MsG0680032308.01.T01 MTR_3g094740 37.500 240 126 4 103 338 176 395 2.49e-40 152
MsG0680032308.01.T01 MTR_8g091710 39.623 212 108 3 127 338 195 386 6.19e-40 150
MsG0680032308.01.T01 MTR_1g095480 33.445 299 159 7 54 338 116 388 9.65e-38 143
MsG0680032308.01.T01 MTR_3g105760 37.555 229 102 5 122 339 123 321 1.10e-37 144
MsG0680032308.01.T01 MTR_1g095480 33.445 299 159 7 54 338 116 388 2.07e-37 144
MsG0680032308.01.T01 MTR_3g082750 36.792 212 114 2 127 338 201 392 4.91e-37 142
MsG0680032308.01.T01 MTR_1g008980 29.018 224 122 7 127 339 51 248 2.06e-21 96.7
MsG0680032308.01.T01 MTR_5g068050 30.180 222 125 6 130 346 128 324 3.63e-20 92.4
MsG0680032308.01.T01 MTR_4g104070 32.850 207 112 4 136 339 77 259 1.39e-19 90.5
MsG0680032308.01.T01 MTR_5g077080 30.213 235 135 6 107 337 60 269 1.68e-17 84.3
MsG0680032308.01.T01 MTR_8g464860 38.525 122 68 2 134 248 214 335 9.25e-16 79.3
MsG0680032308.01.T01 MTR_4g091510 34.146 164 91 4 130 286 221 374 3.28e-14 74.3
MsG0680032308.01.T01 MTR_4g091510 34.146 164 91 4 130 286 216 369 3.67e-14 74.3
MsG0680032308.01.T01 MTR_2g011640 31.156 199 109 6 130 321 269 446 1.08e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032308.01.T01 AT1G71810 58.011 362 125 4 10 370 5 340 1.45e-135 403
MsG0680032308.01.T01 AT1G79600 41.509 265 132 4 76 339 96 338 1.68e-58 202
MsG0680032308.01.T01 AT3G24190 35.849 265 147 2 76 339 141 383 4.89e-48 174
MsG0680032308.01.T01 AT4G31390 33.333 339 171 8 22 339 55 359 1.48e-42 157
MsG0680032308.01.T01 AT5G24970 38.723 235 100 3 126 339 136 347 1.54e-42 158
MsG0680032308.01.T01 AT5G24970 38.723 235 100 3 126 339 175 386 1.77e-42 158
MsG0680032308.01.T01 AT5G64940 40.000 215 109 3 124 338 216 410 1.43e-40 152
MsG0680032308.01.T01 AT5G64940 40.000 215 109 3 124 338 216 410 1.43e-40 152
MsG0680032308.01.T01 AT5G24970 38.298 235 98 4 126 339 136 344 1.58e-39 149
MsG0680032308.01.T01 AT3G07700 38.679 212 108 3 127 338 190 379 2.63e-38 145
MsG0680032308.01.T01 AT3G07700 38.679 212 108 3 127 338 190 379 2.63e-38 145
MsG0680032308.01.T01 AT3G07700 38.679 212 108 3 127 338 190 379 2.63e-38 145
MsG0680032308.01.T01 AT3G07700 38.679 212 108 3 127 338 190 379 2.94e-38 145
MsG0680032308.01.T01 AT4G31390 32.153 339 150 10 22 339 55 334 1.52e-36 140
MsG0680032308.01.T01 AT2G39190 32.867 286 160 6 59 338 128 387 1.80e-34 135
MsG0680032308.01.T01 AT4G31390 39.130 184 84 2 160 339 1 160 3.91e-30 120
MsG0680032308.01.T01 AT2G39190 33.074 257 140 6 59 309 128 358 1.83e-28 114
MsG0680032308.01.T01 AT5G05200 29.545 220 129 5 130 346 129 325 4.80e-21 95.1
MsG0680032308.01.T01 AT1G65950 28.889 225 135 4 113 337 85 284 9.34e-19 87.8
MsG0680032308.01.T01 AT1G65950 28.889 225 135 4 113 337 85 284 1.24e-18 87.8
MsG0680032308.01.T01 AT5G24810 27.309 249 135 7 105 339 79 295 1.55e-18 88.2
MsG0680032308.01.T01 AT4G24810 28.017 232 136 6 114 338 5 212 2.76e-16 79.3
MsG0680032308.01.T01 AT4G24810 28.017 232 136 6 114 338 5 212 3.37e-16 79.0
MsG0680032308.01.T01 AT4G24810 28.017 232 136 6 114 338 5 212 6.36e-16 79.3
MsG0680032308.01.T01 AT4G24810 28.017 232 136 6 114 338 5 212 6.36e-16 79.3
MsG0680032308.01.T01 AT4G24810 28.017 232 136 6 114 338 48 255 6.89e-16 79.3
MsG0680032308.01.T01 AT1G11390 34.302 172 88 5 130 286 208 369 3.27e-15 77.4
MsG0680032308.01.T01 AT5G50330 28.155 206 121 5 136 338 74 255 2.88e-14 74.3
MsG0680032308.01.T01 AT4G24810 27.197 239 136 7 114 338 5 219 9.65e-14 72.8
MsG0680032308.01.T01 AT1G61640 29.756 205 116 5 124 321 207 390 2.58e-13 71.6
MsG0680032308.01.T01 AT1G61640 29.756 205 116 5 124 321 207 390 4.01e-13 71.2
MsG0680032308.01.T01 AT1G61640 29.756 205 116 5 124 321 207 390 4.08e-13 71.2
MsG0680032308.01.T01 AT4G01660 27.313 227 137 5 122 347 220 419 9.13e-11 63.9

Find 91 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAGAAATGGAAGTTATTA+TGG 0.243042 6:+38168153 None:intergenic
TACAGTAATCAAACGGTAAA+TGG 0.256253 6:+38161638 None:intergenic
TCGAGCTGATGAGATGTTTC+AGG 0.306292 6:-38167724 MsG0680032308.01.T01:intron
TTTGATACCACCATCGTATC+TGG 0.316007 6:-38164816 MsG0680032308.01.T01:CDS
GATTGTTGTTGCGAGGAAAT+TGG 0.319239 6:-38167808 MsG0680032308.01.T01:CDS
GACTCGTTTACGGCGAAGTC+AGG 0.322650 6:-38167918 MsG0680032308.01.T01:CDS
AAAATTGAATACTGATCTTC+AGG 0.330649 6:-38164389 MsG0680032308.01.T01:CDS
CCTGTTGCTGCTGCTTCTCT+TGG 0.336520 6:-38164674 MsG0680032308.01.T01:CDS
AACCAATGCATACCCGAAAA+AGG 0.340165 6:+38163470 None:intergenic
AAGGCAACTTCTGTGGAAAA+TGG 0.340590 6:+38164761 None:intergenic
TTGGGAAGTGGTTTGGTTTG+AGG 0.350357 6:-38167767 MsG0680032308.01.T01:CDS
GTTCAAACTGGAATCGCGTT+TGG 0.350909 6:-38167786 MsG0680032308.01.T01:CDS
GATAAACAGTGAATTTATCT+AGG 0.387345 6:+38161575 None:intergenic
GAGGGAAATGAGAGAGAAGT+TGG 0.387401 6:+38168047 None:intergenic
TGGAGATGGAGAAGTTAGTT+GGG 0.392248 6:+38168015 None:intergenic
TGAAGAAGGTGGTTATGGTT+GGG 0.397769 6:+38168128 None:intergenic
TGCTGCTGCTTCTCTTGGCC+AGG 0.399547 6:-38164669 MsG0680032308.01.T01:intron
TATGGTTGGGATTGGAGAAA+TGG 0.400742 6:+38168141 None:intergenic
ATCGCGTTTGGGAAGTGGTT+TGG 0.402365 6:-38167774 MsG0680032308.01.T01:CDS
CGAGTCATCGTTACCGGAGA+TGG 0.404690 6:+38167935 None:intergenic
CAAGCAATGGTATCAAGTTC+AGG 0.411816 6:-38162612 MsG0680032308.01.T01:intron
GTGGAGATGGAGAAGTTAGT+TGG 0.412668 6:+38168014 None:intergenic
TCCATCTCATGTATTGCCAC+TGG 0.413771 6:+38161552 None:intergenic
CGTAAACGAGTCATCGTTAC+CGG 0.414888 6:+38167929 None:intergenic
ACAACGACGGCGACGGTTAG+AGG 0.415551 6:+38167989 None:intergenic
CTGGAATCGCGTTTGGGAAG+TGG 0.416715 6:-38167779 MsG0680032308.01.T01:CDS
CGGTAACGATGACTCGTTTA+CGG 0.419080 6:-38167928 MsG0680032308.01.T01:CDS
CTCTTGTTCAATCATGTTGA+AGG 0.420980 6:+38164742 None:intergenic
GAAGCAGCAGCAACAGGCTC+GGG 0.422444 6:+38164680 None:intergenic
GCGAGGAAATTGGTTCAAAC+TGG 0.422627 6:-38167798 MsG0680032308.01.T01:CDS
CCAAGAGAAGCAGCAGCAAC+AGG 0.422729 6:+38164674 None:intergenic
TGAGATGAAGAAGGTGGTTA+TGG 0.425745 6:+38168123 None:intergenic
CTGTCCTGTTCTGCGAAGCC+TGG 0.426035 6:+38164510 None:intergenic
GGAAGCAGTGGTGGTGCATT+TGG 0.427773 6:+38167956 None:intergenic
TATGTGGACAGGAACTTATA+TGG 0.429530 6:-38161748 MsG0680032308.01.T01:intron
TGCAGAGCTAAGGAAGATAT+TGG 0.431754 6:-38166271 MsG0680032308.01.T01:CDS
CAAGCCAGGCTTCGCAGAAC+AGG 0.441419 6:-38164514 MsG0680032308.01.T01:CDS
TTCAAACTGGAATCGCGTTT+GGG 0.445466 6:-38167785 MsG0680032308.01.T01:CDS
AAGGTGGTTATGGTTGGGAT+TGG 0.451442 6:+38168133 None:intergenic
TTTCCGCTTCAGTTGCGCTT+AGG 0.452821 6:+38167883 None:intergenic
AATTTCCTCGCAACAACAAT+CGG 0.453601 6:+38167810 None:intergenic
ACCACCACTGCTTCCATCTC+CGG 0.472500 6:-38167948 MsG0680032308.01.T01:CDS
ACGGCGACGGTTAGAGGAAG+TGG 0.480833 6:+38167995 None:intergenic
ACAAGAGCTTGGTTTATCCT+TGG 0.482656 6:-38164726 MsG0680032308.01.T01:CDS
AGAAGCAGCAGCAACAGGCT+CGG 0.489855 6:+38164679 None:intergenic
AACATGATTGAACAAGAGCT+TGG 0.490776 6:-38164737 MsG0680032308.01.T01:CDS
TTGGTGTTGTTGTTGAAATG+AGG 0.494406 6:+38168066 None:intergenic
AGGAAGATATTGGTGGAACT+TGG 0.495469 6:-38166261 MsG0680032308.01.T01:CDS
GGCATATATCAAAATTGCTC+AGG 0.501314 6:-38165648 MsG0680032308.01.T01:CDS
CGACCTAAGCGCAACTGAAG+CGG 0.507082 6:-38167886 MsG0680032308.01.T01:CDS
GATATTGGTGGAACTTGGTC+CGG 0.507286 6:-38166256 MsG0680032308.01.T01:intron
CAGGCTTCGCAGAACAGGAC+AGG 0.514638 6:-38164509 MsG0680032308.01.T01:CDS
AGGTTAGAGCTGCAGAGCTA+AGG 0.520960 6:-38166281 MsG0680032308.01.T01:CDS
GGAAATTGCAGCTTGAACAC+CGG 0.521359 6:+38164462 None:intergenic
CTCTGAGAAAATTTCAGCCA+AGG 0.532002 6:+38164709 None:intergenic
GTGTGTTCTTGTATTTATGC+AGG 0.533595 6:-38163518 MsG0680032308.01.T01:CDS
TGCAGGCAGTTGTCGATGAG+TGG 0.539064 6:-38163501 MsG0680032308.01.T01:CDS
GCAAGGTCCTTGTCATGGAA+TGG 0.539892 6:-38161675 MsG0680032308.01.T01:CDS
CATGTTGAAGGCAACTTCTG+TGG 0.542735 6:+38164754 None:intergenic
GATCATAGGTTTATCAAGCC+AGG 0.545220 6:-38164528 MsG0680032308.01.T01:intron
ACGGTTAGAGGAAGTGGAGA+TGG 0.547934 6:+38168001 None:intergenic
GAAATTGCAGCTTGAACACC+GGG 0.549618 6:+38164463 None:intergenic
ATGAAGAAGGTGGTTATGGT+TGG 0.550628 6:+38168127 None:intergenic
GCTGGGCTGGCTAAAAGAGC+AGG 0.551138 6:-38164412 MsG0680032308.01.T01:CDS
AGCAGTGGTGGTGCATTTGG+CGG 0.551760 6:+38167959 None:intergenic
CCTTGTCATGGAATGGATTG+AGG 0.554585 6:-38161668 MsG0680032308.01.T01:CDS
AACGCAAGATCAAAATGTCA+AGG 0.562150 6:+38164440 None:intergenic
AACTCGCAAGGTCCTTGTCA+TGG 0.566536 6:-38161680 MsG0680032308.01.T01:CDS
CCATCTCATGTATTGCCACT+GGG 0.567893 6:+38161553 None:intergenic
ATAAACAGTGAATTTATCTA+GGG 0.572558 6:+38161576 None:intergenic
TACAATAATGAAGCAAGCAA+TGG 0.574022 6:-38162625 MsG0680032308.01.T01:CDS
GCAGGCAGTTGTCGATGAGT+GGG 0.578173 6:-38163500 MsG0680032308.01.T01:CDS
ACGCAAGATCAAAATGTCAA+GGG 0.580070 6:+38164441 None:intergenic
GTGTACTCTGTGTACATCAA+AGG 0.581508 6:+38161703 None:intergenic
ACTCGTTTACGGCGAAGTCA+GGG 0.588211 6:-38167917 MsG0680032308.01.T01:CDS
ACCGGAGATGGAAGCAGTGG+TGG 0.592868 6:+38167947 None:intergenic
GAAAACCGATTGTTGTTGCG+AGG 0.593263 6:-38167815 MsG0680032308.01.T01:CDS
AGTAGCAACAACGACGGCGA+CGG 0.601124 6:+38167982 None:intergenic
ATATGGTTCTATACAAGATG+TGG 0.611017 6:-38161731 MsG0680032308.01.T01:CDS
AAATCTGAATGAGATGAAGA+AGG 0.616251 6:+38168114 None:intergenic
CCTCAATCCATTCCATGACA+AGG 0.624850 6:+38161668 None:intergenic
TGGTTCTATACAAGATGTGG+TGG 0.625881 6:-38161728 MsG0680032308.01.T01:CDS
TCTGAATGAGATGAAGAAGG+TGG 0.627400 6:+38168117 None:intergenic
AGAGCTAAGGAAGATATTGG+TGG 0.628817 6:-38166268 MsG0680032308.01.T01:CDS
AAATTCACTGTTTATCCCAG+TGG 0.630935 6:-38161568 MsG0680032308.01.T01:CDS
GCTGTTAAAGTGCAAAGACC+CGG 0.658532 6:-38164481 MsG0680032308.01.T01:CDS
CACAGAGTACACAACTCGCA+AGG 0.664553 6:-38161692 MsG0680032308.01.T01:CDS
GTTACCGGAGATGGAAGCAG+TGG 0.677284 6:+38167944 None:intergenic
GAAAGCTCATCCAGATACGA+TGG 0.678270 6:+38164806 None:intergenic
AGCTCATCCAGATACGATGG+TGG 0.697872 6:+38164809 None:intergenic
TGGCGGAGTAGCAACAACGA+CGG 0.755358 6:+38167976 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGATAAAATAAAATCAAA+AGG + Chr6:38162408-38162427 None:intergenic 10.0%
!!! AAAAAATTACAAATACTTTT+AGG + Chr6:38164599-38164618 None:intergenic 10.0%
!!! AAAATATATATTTTAGTTTG+CGG + Chr6:38164015-38164034 None:intergenic 10.0%
!!! AATTGTATTTTTATTTGATT+AGG - Chr6:38166745-38166764 MsG0680032308.01.T01:intron 10.0%
!! AAAAAAAAAAAGTGAATGTA+TGG - Chr6:38166360-38166379 MsG0680032308.01.T01:intron 15.0%
!! AAAAAAAAAAGTGAATGTAT+GGG - Chr6:38166361-38166380 MsG0680032308.01.T01:intron 15.0%
!! AAAAACAACTTACAAATATA+CGG - Chr6:38163230-38163249 MsG0680032308.01.T01:intron 15.0%
!! AAAACAATAATATATAAGGA+TGG + Chr6:38166799-38166818 None:intergenic 15.0%
!! AAACAATAATATATAAGGAT+GGG + Chr6:38166798-38166817 None:intergenic 15.0%
!! AACATTTGTAATTAAAAACA+TGG + Chr6:38164319-38164338 None:intergenic 15.0%
!! AATACAAATATTTGGAAATA+TGG + Chr6:38164533-38164552 None:intergenic 15.0%
!! AATCCTACAAAAAAAAAAAA+TGG + Chr6:38164879-38164898 None:intergenic 15.0%
!! AATGAAATAATAAATGAGTA+AGG + Chr6:38167537-38167556 None:intergenic 15.0%
!! ATCACAATACTTAATAAATT+TGG - Chr6:38167332-38167351 MsG0680032308.01.T01:intron 15.0%
!! ATGAAATAATAAATGAGTAA+GGG + Chr6:38167536-38167555 None:intergenic 15.0%
!! TACAAATAAATCAAAACTTA+CGG + Chr6:38164106-38164125 None:intergenic 15.0%
!!! AAATATATATTTTAGTTTGC+GGG + Chr6:38164014-38164033 None:intergenic 15.0%
!!! ACATGACATATTTAAAATTT+CGG + Chr6:38163677-38163696 None:intergenic 15.0%
!!! ACTTTTAGGTATATTTATTT+AGG + Chr6:38164585-38164604 None:intergenic 15.0%
!!! AGATTTGAAATACAAATATT+TGG + Chr6:38164541-38164560 None:intergenic 15.0%
!!! ATTCCATTTTTTTTTTTTGT+AGG - Chr6:38164873-38164892 MsG0680032308.01.T01:intron 15.0%
!!! TTTTTTTGATAAATTGGATT+GGG + Chr6:38166344-38166363 None:intergenic 15.0%
!!! TTTTTTTTGATAAATTGGAT+TGG + Chr6:38166345-38166364 None:intergenic 15.0%
!! AAAAAAAAAGTGAATGTATG+GGG - Chr6:38166362-38166381 MsG0680032308.01.T01:intron 20.0%
!! AACAAAATAATTCTCCAAAA+TGG - Chr6:38167652-38167671 MsG0680032308.01.T01:intron 20.0%
!! AACTATTCATATTGTATGTT+TGG - Chr6:38166466-38166485 MsG0680032308.01.T01:intron 20.0%
!! ACATACAATATGAATAGTTA+TGG + Chr6:38166465-38166484 None:intergenic 20.0%
!! ATAAACAGTGAATTTATCTA+GGG + Chr6:38168140-38168159 None:intergenic 20.0%
!! ATAGATATGAAGATCAATAA+TGG + Chr6:38166118-38166137 None:intergenic 20.0%
!! ATTAAATTCAACCAAAAACT+AGG + Chr6:38162600-38162619 None:intergenic 20.0%
!! CATATTCAAATAAATGACAA+AGG + Chr6:38164685-38164704 None:intergenic 20.0%
!! TATGTGTAATTTCTTCAAAA+TGG + Chr6:38167453-38167472 None:intergenic 20.0%
!! TATTAGAAAGAACAAAAATG+TGG + Chr6:38165711-38165730 None:intergenic 20.0%
!! TCATAAAAATGCTTATGAAT+AGG + Chr6:38162856-38162875 None:intergenic 20.0%
!! TCTCAAGATTCTTATATTTA+GGG - Chr6:38167826-38167845 MsG0680032308.01.T01:CDS 20.0%
!! TCTCTACAATAAATAAGTAA+GGG - Chr6:38167569-38167588 MsG0680032308.01.T01:intron 20.0%
!! TGAATTTGTAACATTTAACT+GGG - Chr6:38163696-38163715 MsG0680032308.01.T01:intron 20.0%
!! TGATGTTATAACATTTCTAA+AGG + Chr6:38167273-38167292 None:intergenic 20.0%
!! TGTTTATCTAAACAACTATT+TGG - Chr6:38162908-38162927 MsG0680032308.01.T01:intron 20.0%
!! TTAAATTCAACCAAAAACTA+GGG + Chr6:38162599-38162618 None:intergenic 20.0%
!! TTCAATGCAACATTAATTAT+TGG + Chr6:38167608-38167627 None:intergenic 20.0%
!! TTCTCAAGATTCTTATATTT+AGG - Chr6:38167825-38167844 MsG0680032308.01.T01:CDS 20.0%
!!! AAAACGTATTTCTGAAATTT+TGG + Chr6:38163724-38163743 None:intergenic 20.0%
!!! AATTGTTATTGCACAAAAAA+TGG + Chr6:38166729-38166748 None:intergenic 20.0%
!!! ACTTATTTGAGTTTATATAG+TGG - Chr6:38162935-38162954 MsG0680032308.01.T01:intron 20.0%
!!! ATGAACATTTAAAACTCAAT+TGG + Chr6:38164725-38164744 None:intergenic 20.0%
!!! GTAATTTTTTTTATCTGATC+TGG - Chr6:38164609-38164628 MsG0680032308.01.T01:intron 20.0%
!!! TAAGTTTTTTTTTACTTCGT+TGG - Chr6:38166035-38166054 MsG0680032308.01.T01:intron 20.0%
!!! TACGGAAATAAGAATTTTTT+AGG - Chr6:38163248-38163267 MsG0680032308.01.T01:intron 20.0%
!!! TAGGTGTTATTTTATATCTT+AGG - Chr6:38163544-38163563 MsG0680032308.01.T01:CDS 20.0%
!!! TTACTGTATTTTTGCAATTA+TGG - Chr6:38168090-38168109 MsG0680032308.01.T01:exon 20.0%
!!! TTTTTTGATAAATTGGATTG+GGG + Chr6:38166343-38166362 None:intergenic 20.0%
! AAAAGTTACATGAACCTAAA+AGG + Chr6:38163842-38163861 None:intergenic 25.0%
! AAAATTGAATACTGATCTTC+AGG - Chr6:38165324-38165343 MsG0680032308.01.T01:intron 25.0%
! AAAGAACAAAAATGTGGTTT+GGG + Chr6:38165705-38165724 None:intergenic 25.0%
! AAAGTTACATGAACCTAAAA+GGG + Chr6:38163841-38163860 None:intergenic 25.0%
! AAATGTTCATATGCTGTTAA+GGG - Chr6:38164735-38164754 MsG0680032308.01.T01:CDS 25.0%
! AACGAAAATATCTATACCAT+GGG + Chr6:38165872-38165891 None:intergenic 25.0%
! AACTCAATTGGTAAAAGATT+TGG + Chr6:38164713-38164732 None:intergenic 25.0%
! AATAAGCGGAAAAATGTTTA+TGG + Chr6:38162752-38162771 None:intergenic 25.0%
! AATTTGAGCAAAACATATAC+AGG + Chr6:38164781-38164800 None:intergenic 25.0%
! ACAACATTTATTTGATTCCT+TGG + Chr6:38167476-38167495 None:intergenic 25.0%
! AGCTGAAATTCACTATAAAA+AGG + Chr6:38162076-38162095 None:intergenic 25.0%
! AGTTTAAGCTTACAGAAATT+AGG - Chr6:38165772-38165791 MsG0680032308.01.T01:intron 25.0%
! ATTGAGTTATGGTAATTGAT+AGG - Chr6:38163567-38163586 MsG0680032308.01.T01:intron 25.0%
! CTCTCTACAATAAATAAGTA+AGG - Chr6:38167568-38167587 MsG0680032308.01.T01:intron 25.0%
! GAAGAGATTATGAAAATAAG+CGG + Chr6:38162766-38162785 None:intergenic 25.0%
! GATAAACAGTGAATTTATCT+AGG + Chr6:38168141-38168160 None:intergenic 25.0%
! GCAAAAATACAGTAATCAAA+CGG + Chr6:38168085-38168104 None:intergenic 25.0%
! GCATTATTATTCGTTATATG+TGG - Chr6:38167949-38167968 MsG0680032308.01.T01:CDS 25.0%
! GTATTGTGATTTAATCAATG+AGG + Chr6:38167322-38167341 None:intergenic 25.0%
! GTGAATTTGTAACATTTAAC+TGG - Chr6:38163695-38163714 MsG0680032308.01.T01:intron 25.0%
! GTTTAAGCTTACAGAAATTA+GGG - Chr6:38165773-38165792 MsG0680032308.01.T01:intron 25.0%
! TAAATGTTCATATGCTGTTA+AGG - Chr6:38164734-38164753 MsG0680032308.01.T01:CDS 25.0%
! TACATTTGAAAATGTGAAAG+AGG - Chr6:38167778-38167797 MsG0680032308.01.T01:CDS 25.0%
! TACTGGATTGTGTATATAAT+AGG - Chr6:38163954-38163973 MsG0680032308.01.T01:intron 25.0%
! TAGAAACTGAAATTGAATAC+AGG - Chr6:38167045-38167064 MsG0680032308.01.T01:intron 25.0%
! TATATCTTAGGATTGAGTTA+TGG - Chr6:38163556-38163575 MsG0680032308.01.T01:intron 25.0%
! TCCAAAATATCTATAACTAG+TGG + Chr6:38167743-38167762 None:intergenic 25.0%
! TTGAGTTATGGTAATTGATA+GGG - Chr6:38163568-38163587 MsG0680032308.01.T01:intron 25.0%
! TTTAAGCTTACAGAAATTAG+GGG - Chr6:38165774-38165793 MsG0680032308.01.T01:intron 25.0%
! TTTCTGAGTAAAAACTGATT+CGG + Chr6:38166880-38166899 None:intergenic 25.0%
!! AAAGGAAAACTGATAATGAT+AGG + Chr6:38164437-38164456 None:intergenic 25.0%
!! AACAAGAAATGCTAATTTGT+TGG - Chr6:38167922-38167941 MsG0680032308.01.T01:CDS 25.0%
!! AATTGAATCTGGTTGATATT+AGG - Chr6:38164637-38164656 MsG0680032308.01.T01:intron 25.0%
!! ATTGAATCTGGTTGATATTA+GGG - Chr6:38164638-38164657 MsG0680032308.01.T01:intron 25.0%
!! GATATTTGTGAAGAAGTTTT+AGG - Chr6:38165933-38165952 MsG0680032308.01.T01:intron 25.0%
!! TAACTTGGGTTTTTATCAAA+TGG + Chr6:38164266-38164285 None:intergenic 25.0%
!! TATCATTATCAGTTTTCCTT+TGG - Chr6:38164436-38164455 MsG0680032308.01.T01:CDS 25.0%
!! TCCACTAGTTATAGATATTT+TGG - Chr6:38167739-38167758 MsG0680032308.01.T01:CDS 25.0%
!! TTATTTTCACTATCCTTGTT+TGG - Chr6:38163869-38163888 MsG0680032308.01.T01:intron 25.0%
!! TTTTCATAATTTCTCCAAGA+TGG - Chr6:38163034-38163053 MsG0680032308.01.T01:intron 25.0%
!! TTTTCCCAAATTTATCCTTT+AGG - Chr6:38167385-38167404 MsG0680032308.01.T01:intron 25.0%
!!! AAAAGTGTTTTTCTATAAGC+TGG - Chr6:38163125-38163144 MsG0680032308.01.T01:intron 25.0%
!!! AAACTCAAAAGTACTAATCA+AGG - Chr6:38166510-38166529 MsG0680032308.01.T01:intron 25.0%
!!! AATGTGAGCATTTATTTCTA+AGG + Chr6:38166553-38166572 None:intergenic 25.0%
!!! ACAAGAAATGCTAATTTGTT+GGG - Chr6:38167923-38167942 MsG0680032308.01.T01:CDS 25.0%
!!! AGAATTTTTTAGGCATTTGA+TGG - Chr6:38163258-38163277 MsG0680032308.01.T01:intron 25.0%
!!! ATAATAGGTTAGTTTCTTAG+TGG - Chr6:38163969-38163988 MsG0680032308.01.T01:intron 25.0%
!!! ATGGATTTTTGGATAAAAGA+AGG - Chr6:38165434-38165453 MsG0680032308.01.T01:intron 25.0%
!!! CTATTTCTTTTCTTTGTTTC+TGG - Chr6:38164146-38164165 MsG0680032308.01.T01:intron 25.0%
!!! GAACATGGCAATTTAATTTT+TGG - Chr6:38164826-38164845 MsG0680032308.01.T01:intron 25.0%
!!! GCTGGTTATTTTATAATTGT+TGG - Chr6:38163488-38163507 MsG0680032308.01.T01:CDS 25.0%
!!! TTTTTCTAGCCTCTTTTTAT+AGG + Chr6:38167805-38167824 None:intergenic 25.0%
AAAAACCCAAGTTATGAAGA+GGG - Chr6:38164272-38164291 MsG0680032308.01.T01:intron 30.0%
AAAACCCATAACTAGAGATT+CGG - Chr6:38167868-38167887 MsG0680032308.01.T01:CDS 30.0%
AAAATAGGTTCAACCTTTCA+AGG + Chr6:38167166-38167185 None:intergenic 30.0%
AAACTCCAATAATACCTGAA+AGG + Chr6:38162191-38162210 None:intergenic 30.0%
AAATCAATTCTCTCTCCTAA+AGG + Chr6:38167403-38167422 None:intergenic 30.0%
AAATCCGAATCTCTAGTTAT+GGG + Chr6:38167875-38167894 None:intergenic 30.0%
AAATCTGAATGAGATGAAGA+AGG + Chr6:38161602-38161621 None:intergenic 30.0%
AACCTCTTGTGTAAAAAACA+GGG - Chr6:38165603-38165622 MsG0680032308.01.T01:intron 30.0%
AAGAACAAAAATGTGGTTTG+GGG + Chr6:38165704-38165723 None:intergenic 30.0%
AAGCTGTTTATCCAAACATT+GGG - Chr6:38163152-38163171 MsG0680032308.01.T01:intron 30.0%
ACCAAGAACATTATACATAC+TGG - Chr6:38163937-38163956 MsG0680032308.01.T01:intron 30.0%
AGTTTAGTGAAATAGCATGA+CGG - Chr6:38166607-38166626 MsG0680032308.01.T01:intron 30.0%
ATAAAATAACACCTAGTTCG+AGG + Chr6:38163539-38163558 None:intergenic 30.0%
ATCTGGTAGTTAATTGAATC+TGG - Chr6:38164626-38164645 MsG0680032308.01.T01:intron 30.0%
ATGATAAGCACTTATGCAAT+AGG - Chr6:38162461-38162480 MsG0680032308.01.T01:intron 30.0%
ATGTTGCATTGAAACTTGAA+AGG - Chr6:38167615-38167634 MsG0680032308.01.T01:intron 30.0%
ATTATTCGTTATATGTGGAC+AGG - Chr6:38167954-38167973 MsG0680032308.01.T01:CDS 30.0%
ATTCTTATATTTAGGGACGA+AGG - Chr6:38167833-38167852 MsG0680032308.01.T01:CDS 30.0%
CAACGAAAATATCTATACCA+TGG + Chr6:38165873-38165892 None:intergenic 30.0%
CTCTCCTAAAGGATAAATTT+GGG + Chr6:38167392-38167411 None:intergenic 30.0%
GAAAGAACAAAAATGTGGTT+TGG + Chr6:38165706-38165725 None:intergenic 30.0%
GACATGAGTGTTAATGATAA+AGG + Chr6:38166091-38166110 None:intergenic 30.0%
TAAAAACCCAAGTTATGAAG+AGG - Chr6:38164271-38164290 MsG0680032308.01.T01:intron 30.0%
TAAGCTGTTTATCCAAACAT+TGG - Chr6:38163151-38163170 MsG0680032308.01.T01:intron 30.0%
TACAATAATGAAGCAAGCAA+TGG - Chr6:38167088-38167107 MsG0680032308.01.T01:intron 30.0%
TACAGTAATCAAACGGTAAA+TGG + Chr6:38168078-38168097 None:intergenic 30.0%
TCAAATGGAATTAGATTCAG+TGG + Chr6:38164251-38164270 None:intergenic 30.0%
TCCAGTATGTATAATGTTCT+TGG + Chr6:38163941-38163960 None:intergenic 30.0%
TCTCTCCTAAAGGATAAATT+TGG + Chr6:38167393-38167412 None:intergenic 30.0%
TGAAGAAATTACACATACCA+AGG - Chr6:38167456-38167475 MsG0680032308.01.T01:intron 30.0%
TGACACTTTATGAGAACTTA+TGG - Chr6:38162316-38162335 MsG0680032308.01.T01:intron 30.0%
TGGAGAAATGGAAGTTATTA+TGG + Chr6:38161563-38161582 None:intergenic 30.0%
TGTTGCATTGAAACTTGAAA+GGG - Chr6:38167616-38167635 MsG0680032308.01.T01:intron 30.0%
TTAAGCTTACAGAAATTAGG+GGG - Chr6:38165775-38165794 MsG0680032308.01.T01:intron 30.0%
TTAGTTGGGATGAAAAAAGA+GGG + Chr6:38161687-38161706 None:intergenic 30.0%
TTGATTGCTAGTTACAGAAA+AGG - Chr6:38167713-38167732 MsG0680032308.01.T01:intron 30.0%
TTTAACTGTCTTAGAAATCG+TGG - Chr6:38165988-38166007 MsG0680032308.01.T01:intron 30.0%
! AACAGACTAATTTGCATCAA+TGG + Chr6:38166840-38166859 None:intergenic 30.0%
! AATGGACAAGTATTGTGAAA+CGG - Chr6:38167670-38167689 MsG0680032308.01.T01:intron 30.0%
! AATGGACAAGTATTGTGAAA+CGG + Chr6:38167689-38167670 None:intergenic 30.0%
! ATATGGTTCTATACAAGATG+TGG - Chr6:38167982-38168001 MsG0680032308.01.T01:CDS 30.0%
! CGAATTTTCTGTTAAGAACA+TGG - Chr6:38164811-38164830 MsG0680032308.01.T01:CDS 30.0%
! CTGTTGAAGTTATGGATTTT+TGG - Chr6:38165423-38165442 MsG0680032308.01.T01:intron 30.0%
! TCAGTTCTTTTCATTCCAAA+CGG + Chr6:38163382-38163401 None:intergenic 30.0%
! TTCACAATACTTGTCCATTT+TGG + Chr6:38167455-38167436 None:intergenic 30.0%
! TTTGAAGTTATGTCCTTGAA+AGG - Chr6:38167150-38167169 MsG0680032308.01.T01:intron 30.0%
!! AAAAGTACTAATCAAGGACA+AGG - Chr6:38166516-38166535 MsG0680032308.01.T01:intron 30.0%
!! CATTTTGATCTTGCGTTTTA+TGG - Chr6:38165279-38165298 MsG0680032308.01.T01:intron 30.0%
!!! CGGGATTTTTTATTTTGATC+TGG - Chr6:38166627-38166646 MsG0680032308.01.T01:intron 30.0%
!!! GCTTTTTTCATAAGTTATCC+TGG + Chr6:38162369-38162388 None:intergenic 30.0%
!!! TGATTTTTCGAGTTTTGTGA+TGG - Chr6:38162035-38162054 MsG0680032308.01.T01:intron 30.0%
AAACTGGTGAAGAAAAAGAG+AGG + Chr6:38166923-38166942 None:intergenic 35.0%
AAATTCACTGTTTATCCCAG+TGG - Chr6:38168145-38168164 MsG0680032308.01.T01:five_prime_UTR 35.0%
AACATGATTGAACAAGAGCT+TGG - Chr6:38164976-38164995 MsG0680032308.01.T01:intron 35.0%
AACATGGTACTTCAGTAGTT+TGG + Chr6:38164303-38164322 None:intergenic 35.0%
AACCTAAAAGGGAATATTGC+AGG + Chr6:38163830-38163849 None:intergenic 35.0%
AACGCAAGATCAAAATGTCA+AGG + Chr6:38165276-38165295 None:intergenic 35.0%
AACTATGGTGAGGTTCAATT+TGG + Chr6:38163802-38163821 None:intergenic 35.0%
AATCCTCACTAAACCAAACA+AGG + Chr6:38163885-38163904 None:intergenic 35.0%
AATTTCCTCGCAACAACAAT+CGG + Chr6:38161906-38161925 None:intergenic 35.0%
ACACCAAGCAATCATGTAAA+CGG + Chr6:38166299-38166318 None:intergenic 35.0%
ACCTAAAAGGGAATATTGCA+GGG + Chr6:38163829-38163848 None:intergenic 35.0%
ACGCAAGATCAAAATGTCAA+GGG + Chr6:38165275-38165294 None:intergenic 35.0%
ACGGAAAATCAAATGTCTGA+AGG + Chr6:38163363-38163382 None:intergenic 35.0%
AGAGTGTGTTAACACCAAAA+TGG - Chr6:38165391-38165410 MsG0680032308.01.T01:intron 35.0%
AGTGGCTTATATCTCAGAAT+AGG + Chr6:38164233-38164252 None:intergenic 35.0%
ATGATGTTCATAAGCTTTCC+AGG - Chr6:38162348-38162367 MsG0680032308.01.T01:intron 35.0%
ATGCAATAGGCTACAAGATA+AGG - Chr6:38162474-38162493 MsG0680032308.01.T01:intron 35.0%
CAAATCCGAATCTCTAGTTA+TGG + Chr6:38167876-38167895 None:intergenic 35.0%
CAACCTCTTGTGTAAAAAAC+AGG - Chr6:38165602-38165621 MsG0680032308.01.T01:intron 35.0%
CATTGCATAAACTTCTGATC+AGG + Chr6:38166676-38166695 None:intergenic 35.0%
CATTTGTGATTCTTCGTGTA+TGG - Chr6:38164170-38164189 MsG0680032308.01.T01:intron 35.0%
CTCTTGTTCAATCATGTTGA+AGG + Chr6:38164974-38164993 None:intergenic 35.0%
GAAAGAGGTCCTATAAAAAG+AGG - Chr6:38167793-38167812 MsG0680032308.01.T01:CDS 35.0%
GAAATTACAACTTCTGTCTC+TGG - Chr6:38165163-38165182 MsG0680032308.01.T01:intron 35.0%
GAATTAGTTGTGCTTCTGTA+AGG - Chr6:38166695-38166714 MsG0680032308.01.T01:intron 35.0%
GACACTGTTTGTGATAACAT+AGG - Chr6:38162696-38162715 MsG0680032308.01.T01:intron 35.0%
GACATGTTCATAAGCTCTTT+AGG - Chr6:38163197-38163216 MsG0680032308.01.T01:intron 35.0%
GATGCATACTACTTTATTGC+AGG - Chr6:38164044-38164063 MsG0680032308.01.T01:intron 35.0%
GCTAGAAAAATACACCAATC+AGG + Chr6:38165083-38165102 None:intergenic 35.0%
GGAAATAGTATGTGTGATCA+TGG - Chr6:38166383-38166402 MsG0680032308.01.T01:intron 35.0%
GGCATATATCAAAATTGCTC+AGG - Chr6:38164065-38164084 MsG0680032308.01.T01:intron 35.0%
GTGGCTTATATCTCAGAATA+GGG + Chr6:38164232-38164251 None:intergenic 35.0%
GTGTGTTCTTGTATTTATGC+AGG - Chr6:38166195-38166214 MsG0680032308.01.T01:intron 35.0%
GTTAGTTGGGATGAAAAAAG+AGG + Chr6:38161688-38161707 None:intergenic 35.0%
GTTTAGTGAAATAGCATGAC+GGG - Chr6:38166608-38166627 MsG0680032308.01.T01:intron 35.0%
TAACAAATCACTGCTTTCGT+AGG + Chr6:38163324-38163343 None:intergenic 35.0%
TATGTGGACAGGAACTTATA+TGG - Chr6:38167965-38167984 MsG0680032308.01.T01:CDS 35.0%
TCTGTTGATATGTCAGTTTG+AGG - Chr6:38162540-38162559 MsG0680032308.01.T01:intron 35.0%
TCTTAAGTTCTCCCAATGTT+TGG + Chr6:38163166-38163185 None:intergenic 35.0%
TGCAAAACCGAACAGTAAAA+AGG + Chr6:38163413-38163432 None:intergenic 35.0%
TTCTTCCCTCTTCATAACTT+GGG + Chr6:38164280-38164299 None:intergenic 35.0%
TTTCAAAGTTGTACCACGTA+TGG - Chr6:38167183-38167202 MsG0680032308.01.T01:intron 35.0%
TTTCTTAAAGTGTGCTCCAA+AGG + Chr6:38164455-38164474 None:intergenic 35.0%
! AACAGCAACGATAACCATTT+TGG + Chr6:38165408-38165427 None:intergenic 35.0%
! AATTAGGGGGCATAATTCAT+AGG - Chr6:38165788-38165807 MsG0680032308.01.T01:intron 35.0%
! ACTGATAATGATAGGCACAT+CGG + Chr6:38164429-38164448 None:intergenic 35.0%
! AGAACAAAAATGTGGTTTGG+GGG + Chr6:38165703-38165722 None:intergenic 35.0%
! ATGAGGAGTCGCATTTTATA+AGG + Chr6:38161633-38161652 None:intergenic 35.0%
! CGTGGTACAACTTTGAAAAT+AGG + Chr6:38167181-38167200 None:intergenic 35.0%
! TATCCTTGTTTGGTTTAGTG+AGG - Chr6:38163879-38163898 MsG0680032308.01.T01:intron 35.0%
! TATCGTTGCTGTTGAAGTTA+TGG - Chr6:38165415-38165434 MsG0680032308.01.T01:intron 35.0%
! TGACTCACCTTTTTACTGTT+CGG - Chr6:38163403-38163422 MsG0680032308.01.T01:intron 35.0%
! TTCAGCCTTTCAGGTATTAT+TGG - Chr6:38162183-38162202 MsG0680032308.01.T01:intron 35.0%
! TTGGAGCACACTTTAAGAAA+GGG - Chr6:38164455-38164474 MsG0680032308.01.T01:CDS 35.0%
! TTTGGAGCACACTTTAAGAA+AGG - Chr6:38164454-38164473 MsG0680032308.01.T01:CDS 35.0%
! TTTTTACTGTTCGGTTTTGC+AGG - Chr6:38163412-38163431 MsG0680032308.01.T01:intron 35.0%
!! ATGATTTGTTGCTGTTAGCA+TGG - Chr6:38163283-38163302 MsG0680032308.01.T01:intron 35.0%
!! CAGACATTTGATTTTCCGTT+TGG - Chr6:38163364-38163383 MsG0680032308.01.T01:intron 35.0%
!! CTTACACATGTATCGATTCT+AGG + Chr6:38166019-38166038 None:intergenic 35.0%
!! GTTGTTTTCATAAGCCATCT+TGG + Chr6:38163051-38163070 None:intergenic 35.0%
!! TTGGTGTTGTTGTTGAAATG+AGG + Chr6:38161650-38161669 None:intergenic 35.0%
!! TTTTCTGCTACCCTAGTTTT+TGG - Chr6:38162586-38162605 MsG0680032308.01.T01:intron 35.0%
!!! ATCATGGTCTTCTTGTTTTC+TGG - Chr6:38166399-38166418 MsG0680032308.01.T01:intron 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG + Chr6:38165608-38165627 None:intergenic 35.0%
!!! TAGTTGATTCGTGAGTTTTG+TGG - Chr6:38162219-38162238 MsG0680032308.01.T01:intron 35.0%
!!! TATATTTTAGTTTGCGGGCA+TGG + Chr6:38164009-38164028 None:intergenic 35.0%
AAAAAGAGAGGAGAGAGAGA+GGG + Chr6:38166911-38166930 None:intergenic 40.0%
AAAAGGGAATATTGCAGGGA+AGG + Chr6:38163825-38163844 None:intergenic 40.0%
AAATAACCAGCCTGACATAC+CGG + Chr6:38163479-38163498 None:intergenic 40.0%
AACCAATGCATACCCGAAAA+AGG + Chr6:38166246-38166265 None:intergenic 40.0%
AACTTCTGTCTCTGGATCAT+AGG - Chr6:38165171-38165190 MsG0680032308.01.T01:intron 40.0%
AAGGCAACTTCTGTGGAAAA+TGG + Chr6:38164955-38164974 None:intergenic 40.0%
ACAAGAGCTTGGTTTATCCT+TGG - Chr6:38164987-38165006 MsG0680032308.01.T01:intron 40.0%
ACAGGGTACAATTCACCAAA+TGG - Chr6:38165620-38165639 MsG0680032308.01.T01:intron 40.0%
AGAGCTAAGGAAGATATTGG+TGG - Chr6:38163445-38163464 MsG0680032308.01.T01:intron 40.0%
AGGAAGATATTGGTGGAACT+TGG - Chr6:38163452-38163471 MsG0680032308.01.T01:intron 40.0%
ATATTGCAGGGAAGGAACTA+TGG + Chr6:38163817-38163836 None:intergenic 40.0%
ATCAATGAGGTCCTATAACG+AGG + Chr6:38167309-38167328 None:intergenic 40.0%
ATCTCAGAATAGGGTTCCTA+CGG + Chr6:38164223-38164242 None:intergenic 40.0%
ATGAAGAAGGTGGTTATGGT+TGG + Chr6:38161589-38161608 None:intergenic 40.0%
ATGTACTCTATCCTCGAACT+AGG - Chr6:38163525-38163544 MsG0680032308.01.T01:CDS 40.0%
ATGTCTCTAAACTGGATGAC+TGG - Chr6:38165740-38165759 MsG0680032308.01.T01:intron 40.0%
CAACTCACAAGTGCTTATGT+TGG + Chr6:38162675-38162694 None:intergenic 40.0%
CAAGCAATGGTATCAAGTTC+AGG - Chr6:38167101-38167120 MsG0680032308.01.T01:intron 40.0%
CAGGTAAGTGCATGCTATTA+AGG - Chr6:38167120-38167139 MsG0680032308.01.T01:intron 40.0%
CTACCGTTTACATGATTGCT+TGG - Chr6:38166293-38166312 MsG0680032308.01.T01:intron 40.0%
GATCATAGGTTTATCAAGCC+AGG - Chr6:38165185-38165204 MsG0680032308.01.T01:intron 40.0%
GGTACAATTCACCAAATGGT+GGG - Chr6:38165624-38165643 MsG0680032308.01.T01:intron 40.0%
GGTGAAGGAATAAGTAGGTT+GGG + Chr6:38164367-38164386 None:intergenic 40.0%
GTAGTGTAGAAGCAAGAAAC+TGG + Chr6:38166939-38166958 None:intergenic 40.0%
GTCATCCAGTTTAGAGACAT+TGG + Chr6:38165740-38165759 None:intergenic 40.0%
GTGAAGGAATAAGTAGGTTG+GGG + Chr6:38164366-38164385 None:intergenic 40.0%
GTGTACTCTGTGTACATCAA+AGG + Chr6:38168013-38168032 None:intergenic 40.0%
GTTCTTCCCTCTTCATAACT+TGG + Chr6:38164281-38164300 None:intergenic 40.0%
TATGGTTGGGATTGGAGAAA+TGG + Chr6:38161575-38161594 None:intergenic 40.0%
TCTGAATGAGATGAAGAAGG+TGG + Chr6:38161599-38161618 None:intergenic 40.0%
TGAAGAAGGTGGTTATGGTT+GGG + Chr6:38161588-38161607 None:intergenic 40.0%
TGAGATGAAGAAGGTGGTTA+TGG + Chr6:38161593-38161612 None:intergenic 40.0%
TGCAGAGCTAAGGAAGATAT+TGG - Chr6:38163442-38163461 MsG0680032308.01.T01:intron 40.0%
TGGAGATGGAGAAGTTAGTT+GGG + Chr6:38161701-38161720 None:intergenic 40.0%
TTCAAACTGGAATCGCGTTT+GGG - Chr6:38161928-38161947 MsG0680032308.01.T01:intron 40.0%
TTGAATACAGGCTTGAATGC+AGG - Chr6:38167057-38167076 MsG0680032308.01.T01:intron 40.0%
TTGAGATGTTTCAGCCTTTC+AGG - Chr6:38162174-38162193 MsG0680032308.01.T01:intron 40.0%
TTGCACCAATGTCTCTAAAC+TGG - Chr6:38165732-38165751 MsG0680032308.01.T01:intron 40.0%
TTTGATACCACCATCGTATC+TGG - Chr6:38164897-38164916 MsG0680032308.01.T01:intron 40.0%
! AACAAAAATGTGGTTTGGGG+GGG + Chr6:38165701-38165720 None:intergenic 40.0%
! CTCTGAGAAAATTTCAGCCA+AGG + Chr6:38165007-38165026 None:intergenic 40.0%
! CTGATAATGATAGGCACATC+GGG + Chr6:38164428-38164447 None:intergenic 40.0%
! GAACAAAAATGTGGTTTGGG+GGG + Chr6:38165702-38165721 None:intergenic 40.0%
! GACAAGTATTGTGAAACGGA+GGG - Chr6:38167674-38167693 MsG0680032308.01.T01:intron 40.0%
! GACAAGTATTGTGAAACGGA+GGG + Chr6:38167693-38167674 None:intergenic 40.0%
! GATATGTCAGTTTGAGGTAG+AGG - Chr6:38162546-38162565 MsG0680032308.01.T01:intron 40.0%
! GATTGTTGTTGCGAGGAAAT+TGG - Chr6:38161905-38161924 MsG0680032308.01.T01:intron 40.0%
! GTGAGGTTGATTAGATGGTT+GGG + Chr6:38164389-38164408 None:intergenic 40.0%
! GTTCATACTTTTGGCCTGAT+TGG - Chr6:38165066-38165085 MsG0680032308.01.T01:intron 40.0%
! TCCCTGCAATATTCCCTTTT+AGG - Chr6:38163825-38163844 MsG0680032308.01.T01:intron 40.0%
! TCTAATAGTTTGCCACCGAA+GGG - Chr6:38165512-38165531 MsG0680032308.01.T01:intron 40.0%
! TGAGGTTGATTAGATGGTTG+GGG + Chr6:38164388-38164407 None:intergenic 40.0%
! TGATCTTGCGTTTTATGGCT+GGG - Chr6:38165284-38165303 MsG0680032308.01.T01:intron 40.0%
! TGGTTCTATACAAGATGTGG+TGG - Chr6:38167985-38168004 MsG0680032308.01.T01:CDS 40.0%
! TTACACAAGAGGTTGTTTCC+AGG + Chr6:38165597-38165616 None:intergenic 40.0%
! TTCTAAAGGATCAGAGAGCA+GGG + Chr6:38167259-38167278 None:intergenic 40.0%
! TTCTAATAGTTTGCCACCGA+AGG - Chr6:38165511-38165530 MsG0680032308.01.T01:intron 40.0%
! TTGATCTTGCGTTTTATGGC+TGG - Chr6:38165283-38165302 MsG0680032308.01.T01:intron 40.0%
! TTTCTAAAGGATCAGAGAGC+AGG + Chr6:38167260-38167279 None:intergenic 40.0%
!! ATTTTCACTCGCAGCTTTGA+AGG - Chr6:38163772-38163791 MsG0680032308.01.T01:intron 40.0%
!! TTGATTCGTGAGTTTTGTGG+TGG - Chr6:38162222-38162241 MsG0680032308.01.T01:intron 40.0%
!!! TTTTCACTCGCAGCTTTGAA+GGG - Chr6:38163773-38163792 MsG0680032308.01.T01:intron 40.0%
AAAAGAGAGGAGAGAGAGAG+GGG + Chr6:38166910-38166929 None:intergenic 45.0%
AAGGTCATGGATTCAAGTCC+TGG - Chr6:38165576-38165595 MsG0680032308.01.T01:intron 45.0%
AAGGTGGTTATGGTTGGGAT+TGG + Chr6:38161583-38161602 None:intergenic 45.0%
ACACACTTTCAGACCATACG+TGG + Chr6:38167199-38167218 None:intergenic 45.0%
CATGTTGAAGGCAACTTCTG+TGG + Chr6:38164962-38164981 None:intergenic 45.0%
CCTCAATCCATTCCATGACA+AGG + Chr6:38168048-38168067 None:intergenic 45.0%
CGGTAACGATGACTCGTTTA+CGG - Chr6:38161785-38161804 MsG0680032308.01.T01:intron 45.0%
CGTAAACGAGTCATCGTTAC+CGG + Chr6:38161787-38161806 None:intergenic 45.0%
GAAAAAGAGAGGAGAGAGAG+AGG + Chr6:38166912-38166931 None:intergenic 45.0%
GAAAGCTCATCCAGATACGA+TGG + Chr6:38164910-38164929 None:intergenic 45.0%
GAAATTGCAGCTTGAACACC+GGG + Chr6:38165253-38165272 None:intergenic 45.0%
GAGGGAAATGAGAGAGAAGT+TGG + Chr6:38161669-38161688 None:intergenic 45.0%
GATATTGGTGGAACTTGGTC+CGG - Chr6:38163457-38163476 MsG0680032308.01.T01:intron 45.0%
GCTGTTAAAGTGCAAAGACC+CGG - Chr6:38165232-38165251 MsG0680032308.01.T01:intron 45.0%
GGAAATTGCAGCTTGAACAC+CGG + Chr6:38165254-38165273 None:intergenic 45.0%
GGGTACAATTCACCAAATGG+TGG - Chr6:38165623-38165642 MsG0680032308.01.T01:intron 45.0%
GGGTGAAGGAATAAGTAGGT+TGG + Chr6:38164368-38164387 None:intergenic 45.0%
GTCATGTGACTGAAAGGTCA+TGG - Chr6:38165563-38165582 MsG0680032308.01.T01:intron 45.0%
GTGGAGATGGAGAAGTTAGT+TGG + Chr6:38161702-38161721 None:intergenic 45.0%
GTTCAAACTGGAATCGCGTT+TGG - Chr6:38161927-38161946 MsG0680032308.01.T01:intron 45.0%
GTTGGGGTGAAGGAATAAGT+AGG + Chr6:38164372-38164391 None:intergenic 45.0%
TCGAGCTGATGAGATGTTTC+AGG - Chr6:38161989-38162008 MsG0680032308.01.T01:intron 45.0%
TGATTAGATGGTTGGGGTGA+AGG + Chr6:38164382-38164401 None:intergenic 45.0%
! AGTGGGCATCAAGCCTTTTT+CGG - Chr6:38166230-38166249 MsG0680032308.01.T01:intron 45.0%
! ATATGCTGTTAAGGGCTAGC+AGG - Chr6:38164743-38164762 MsG0680032308.01.T01:CDS 45.0%
! CTAATAGTTTGCCACCGAAG+GGG - Chr6:38165513-38165532 MsG0680032308.01.T01:intron 45.0%
! CTTGGCCAGGTTCATACTTT+TGG - Chr6:38165057-38165076 MsG0680032308.01.T01:intron 45.0%
! GAAAACCGATTGTTGTTGCG+AGG - Chr6:38161898-38161917 MsG0680032308.01.T01:intron 45.0%
! GAATAAGTAGGTTGGGGTGA+AGG + Chr6:38164360-38164379 None:intergenic 45.0%
! GCGAGGAAATTGGTTCAAAC+TGG - Chr6:38161915-38161934 MsG0680032308.01.T01:intron 45.0%
! GCTTGGTGAGGTTGATTAGA+TGG + Chr6:38164394-38164413 None:intergenic 45.0%
! GGACAAGTATTGTGAAACGG+AGG - Chr6:38167673-38167692 MsG0680032308.01.T01:intron 45.0%
! GGACAAGTATTGTGAAACGG+AGG + Chr6:38167692-38167673 None:intergenic 45.0%
! GGTCTGAAAGTGTGTGCAAA+TGG - Chr6:38167204-38167223 MsG0680032308.01.T01:intron 45.0%
! GGTGAGGTTGATTAGATGGT+TGG + Chr6:38164390-38164409 None:intergenic 45.0%
! TAATAGTTTGCCACCGAAGG+GGG - Chr6:38165514-38165533 MsG0680032308.01.T01:intron 45.0%
! TCAGGCCAAAAGTATGAACC+TGG + Chr6:38165065-38165084 None:intergenic 45.0%
! TTGTTGCTGTTAGCATGGAG+AGG - Chr6:38163288-38163307 MsG0680032308.01.T01:intron 45.0%
!! CCTTGTCATGGAATGGATTG+AGG - Chr6:38168045-38168064 MsG0680032308.01.T01:CDS 45.0%
!! GTGAAACGGAGGGAGTATTT+CGG - Chr6:38167684-38167703 MsG0680032308.01.T01:intron 45.0%
!! TTGGGAAGTGGTTTGGTTTG+AGG - Chr6:38161946-38161965 MsG0680032308.01.T01:intron 45.0%
!!! AGCCTTTTTCGGGTATGCAT+TGG - Chr6:38166241-38166260 MsG0680032308.01.T01:intron 45.0%
!! AAAAAAAACAATAATATATA+AGG + Chr6:38166803-38166822 None:intergenic 5.0%
!!! ATTGTTTATATTTTATTTTT+AGG - Chr6:38166575-38166594 MsG0680032308.01.T01:intron 5.0%
!!! TTTTTTTTTTTTTGATAAAT+TGG + Chr6:38166350-38166369 None:intergenic 5.0%
AAAGAGAGGAGAGAGAGAGG+GGG + Chr6:38166909-38166928 None:intergenic 50.0%
AACTCGCAAGGTCCTTGTCA+TGG - Chr6:38168033-38168052 MsG0680032308.01.T01:CDS 50.0%
ACAAAGCTCCTGCAAACGCA+GGG + Chr6:38165669-38165688 None:intergenic 50.0%
ACAGGCTTGAATGCAGGAGA+TGG - Chr6:38167063-38167082 MsG0680032308.01.T01:intron 50.0%
ACGCGTTCAACTACATCCCA+TGG - Chr6:38165853-38165872 MsG0680032308.01.T01:intron 50.0%
ACGGTTAGAGGAAGTGGAGA+TGG + Chr6:38161715-38161734 None:intergenic 50.0%
ACTCGTTTACGGCGAAGTCA+GGG - Chr6:38161796-38161815 MsG0680032308.01.T01:intron 50.0%
AGCTCATCCAGATACGATGG+TGG + Chr6:38164907-38164926 None:intergenic 50.0%
AGGTTAGAGCTGCAGAGCTA+AGG - Chr6:38163432-38163451 MsG0680032308.01.T01:intron 50.0%
ATCGCGTTTGGGAAGTGGTT+TGG - Chr6:38161939-38161958 MsG0680032308.01.T01:intron 50.0%
ATCGGGTAGTATGTGACGCT+TGG + Chr6:38164411-38164430 None:intergenic 50.0%
CACAGAGTACACAACTCGCA+AGG - Chr6:38168021-38168040 MsG0680032308.01.T01:CDS 50.0%
GCAAGGTCCTTGTCATGGAA+TGG - Chr6:38168038-38168057 MsG0680032308.01.T01:CDS 50.0%
TCTTATGTCAGCGCTTCCGT+AGG - Chr6:38164204-38164223 MsG0680032308.01.T01:intron 50.0%
TGAGGTCCTATAACGAGGCA+CGG + Chr6:38167304-38167323 None:intergenic 50.0%
TTTCCGCTTCAGTTGCGCTT+AGG + Chr6:38161833-38161852 None:intergenic 50.0%
! AAAAATGTGGTTTGGGGGGG+TGG + Chr6:38165698-38165717 None:intergenic 50.0%
! GTAGTATGTGACGCTTGGTG+AGG + Chr6:38164406-38164425 None:intergenic 50.0%
! GTGGGCATCAAGCCTTTTTC+GGG - Chr6:38166231-38166250 MsG0680032308.01.T01:intron 50.0%
! TTAAGGGCTAGCAGGTGGTT+TGG - Chr6:38164751-38164770 MsG0680032308.01.T01:CDS 50.0%
ACCACCACTGCTTCCATCTC+CGG - Chr6:38161765-38161784 MsG0680032308.01.T01:intron 55.0%
AGAAGCAGCAGCAACAGGCT+CGG + Chr6:38165037-38165056 None:intergenic 55.0%
AGTAGCAACAACGACGGCGA+CGG + Chr6:38161734-38161753 None:intergenic 55.0%
CAAACGCAGGGTTCGGGAAA+GGG + Chr6:38165657-38165676 None:intergenic 55.0%
CACAAAGCTCCTGCAAACGC+AGG + Chr6:38165670-38165689 None:intergenic 55.0%
CCAAGAGAAGCAGCAGCAAC+AGG + Chr6:38165042-38165061 None:intergenic 55.0%
CGACCTAAGCGCAACTGAAG+CGG - Chr6:38161827-38161846 MsG0680032308.01.T01:intron 55.0%
CGAGTCATCGTTACCGGAGA+TGG + Chr6:38161781-38161800 None:intergenic 55.0%
CTACCTCCGTGCCTCGTTAT+AGG - Chr6:38167295-38167314 MsG0680032308.01.T01:intron 55.0%
CTGGAATCGCGTTTGGGAAG+TGG - Chr6:38161934-38161953 MsG0680032308.01.T01:intron 55.0%
GACTCGTTTACGGCGAAGTC+AGG - Chr6:38161795-38161814 MsG0680032308.01.T01:intron 55.0%
GCAGGCAGTTGTCGATGAGT+GGG - Chr6:38166213-38166232 MsG0680032308.01.T01:intron 55.0%
GCAGGGAAGGAACTATGGTG+AGG + Chr6:38163812-38163831 None:intergenic 55.0%
GGAACTTGGTCCGGTATGTC+AGG - Chr6:38163466-38163485 MsG0680032308.01.T01:intron 55.0%
GTTACCGGAGATGGAAGCAG+TGG + Chr6:38161772-38161791 None:intergenic 55.0%
TGCAGGCAGTTGTCGATGAG+TGG - Chr6:38166212-38166231 MsG0680032308.01.T01:intron 55.0%
TGGCGGAGTAGCAACAACGA+CGG + Chr6:38161740-38161759 None:intergenic 55.0%
! AGCAGTGGTGGTGCATTTGG+CGG + Chr6:38161757-38161776 None:intergenic 55.0%
! CCTGTTGCTGCTGCTTCTCT+TGG - Chr6:38165039-38165058 MsG0680032308.01.T01:intron 55.0%
! CTTGCGTTTTATGGCTGGGC+TGG - Chr6:38165288-38165307 MsG0680032308.01.T01:intron 55.0%
! GGAAGCAGTGGTGGTGCATT+TGG + Chr6:38161760-38161779 None:intergenic 55.0%
! TGCTGTTAAGGGCTAGCAGG+TGG - Chr6:38164746-38164765 MsG0680032308.01.T01:CDS 55.0%
ACAACGACGGCGACGGTTAG+AGG + Chr6:38161727-38161746 None:intergenic 60.0%
ACCGGAGATGGAAGCAGTGG+TGG + Chr6:38161769-38161788 None:intergenic 60.0%
ACGGCGACGGTTAGAGGAAG+TGG + Chr6:38161721-38161740 None:intergenic 60.0%
CAAGCCAGGCTTCGCAGAAC+AGG - Chr6:38165199-38165218 MsG0680032308.01.T01:intron 60.0%
CAGGCTTCGCAGAACAGGAC+AGG - Chr6:38165204-38165223 MsG0680032308.01.T01:intron 60.0%
CTCCTGCAAACGCAGGGTTC+GGG + Chr6:38165663-38165682 None:intergenic 60.0%
CTGTCCTGTTCTGCGAAGCC+TGG + Chr6:38165206-38165225 None:intergenic 60.0%
CTTGGTCCGGTATGTCAGGC+TGG - Chr6:38163470-38163489 MsG0680032308.01.T01:intron 60.0%
GAAGCAGCAGCAACAGGCTC+GGG + Chr6:38165036-38165055 None:intergenic 60.0%
GCAAACGCAGGGTTCGGGAA+AGG + Chr6:38165658-38165677 None:intergenic 60.0%
GCTCCTGCAAACGCAGGGTT+CGG + Chr6:38165664-38165683 None:intergenic 60.0%
GGTCCTATAACGAGGCACGG+AGG + Chr6:38167301-38167320 None:intergenic 60.0%
TTCCCGAACCCTGCGTTTGC+AGG - Chr6:38165658-38165677 MsG0680032308.01.T01:intron 60.0%
! TGCTGCTGCTTCTCTTGGCC+AGG - Chr6:38165044-38165063 MsG0680032308.01.T01:intron 60.0%
!! GCTGGGCTGGCTAAAAGAGC+AGG - Chr6:38165301-38165320 MsG0680032308.01.T01:intron 60.0%
AAGGGGGAGCCTTGGCGCAA+CGG - Chr6:38165530-38165549 MsG0680032308.01.T01:intron 65.0%
AGGGTCGGGGTCCCACCATT+TGG + Chr6:38165638-38165657 None:intergenic 65.0%
CAGGGTTCGGGAAAGGGTCG+GGG + Chr6:38165651-38165670 None:intergenic 65.0%
CGCAGGGTTCGGGAAAGGGT+CGG + Chr6:38165653-38165672 None:intergenic 65.0%
GCAGGGTTCGGGAAAGGGTC+GGG + Chr6:38165652-38165671 None:intergenic 65.0%
TTGCGCCAAGGCTCCCCCTT+CGG + Chr6:38165530-38165549 None:intergenic 65.0%
TGCCACCGAAGGGGGAGCCT+TGG - Chr6:38165522-38165541 MsG0680032308.01.T01:intron 70.0%
CGCCAAGGCTCCCCCTTCGG+TGG + Chr6:38165527-38165546 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr6 gene 38161558 38168177 38161558 ID=MsG0680032308.01;Name=MsG0680032308.01
Chr6 mRNA 38161558 38168177 38161558 ID=MsG0680032308.01.T01;Parent=MsG0680032308.01;Name=MsG0680032308.01.T01;_AED=0.49;_eAED=0.56;_QI=81|0.57|0.5|1|0.85|0.87|8|0|375
Chr6 exon 38161558 38161759 38161558 ID=MsG0680032308.01.T01:exon:20876;Parent=MsG0680032308.01.T01
Chr6 exon 38162613 38162656 38162613 ID=MsG0680032308.01.T01:exon:20875;Parent=MsG0680032308.01.T01
Chr6 exon 38163483 38163564 38163483 ID=MsG0680032308.01.T01:exon:20874;Parent=MsG0680032308.01.T01
Chr6 exon 38164370 38164542 38164370 ID=MsG0680032308.01.T01:exon:20873;Parent=MsG0680032308.01.T01
Chr6 exon 38164670 38164840 38164670 ID=MsG0680032308.01.T01:exon:20872;Parent=MsG0680032308.01.T01
Chr6 exon 38165631 38165669 38165631 ID=MsG0680032308.01.T01:exon:20871;Parent=MsG0680032308.01.T01
Chr6 exon 38166257 38166301 38166257 ID=MsG0680032308.01.T01:exon:20870;Parent=MsG0680032308.01.T01
Chr6 exon 38167725 38168177 38167725 ID=MsG0680032308.01.T01:exon:20869;Parent=MsG0680032308.01.T01
Chr6 five_prime_UTR 38168097 38168177 38168097 ID=MsG0680032308.01.T01:five_prime_utr;Parent=MsG0680032308.01.T01
Chr6 CDS 38167725 38168096 38167725 ID=MsG0680032308.01.T01:cds;Parent=MsG0680032308.01.T01
Chr6 CDS 38166257 38166301 38166257 ID=MsG0680032308.01.T01:cds;Parent=MsG0680032308.01.T01
Chr6 CDS 38165631 38165669 38165631 ID=MsG0680032308.01.T01:cds;Parent=MsG0680032308.01.T01
Chr6 CDS 38164670 38164840 38164670 ID=MsG0680032308.01.T01:cds;Parent=MsG0680032308.01.T01
Chr6 CDS 38164370 38164542 38164370 ID=MsG0680032308.01.T01:cds;Parent=MsG0680032308.01.T01
Chr6 CDS 38163483 38163564 38163483 ID=MsG0680032308.01.T01:cds;Parent=MsG0680032308.01.T01
Chr6 CDS 38162613 38162656 38162613 ID=MsG0680032308.01.T01:cds;Parent=MsG0680032308.01.T01
Chr6 CDS 38161558 38161759 38161558 ID=MsG0680032308.01.T01:cds;Parent=MsG0680032308.01.T01
Gene Sequence

>MsG0680032308.01.T01

ATGCGACTCCTCATTTCAACAACAACACCAACTTCTCTCTCATTTCCCTCTTTTTTCATCCCAACTAACTTCTCCATCTCCACTTCCTCTAACCGTCGCCGTCGTTGTTGCTACTCCGCCAAATGCACCACCACTGCTTCCATCTCCGGTAACGATGACTCGTTTACGGCGAAGTCAGGGTACTTATTCGACCTAAGCGCAACTGAAGCGGAAACGTTAGAAGATTACAGTATATCAAAGATAGCGACGATTTATTATAGAAAACCGATTGTTGTTGCGAGGAAATTGGTTCAAACTGGAATCGCGTTTGGGAAGTGGTTTGGTTTGAGGTTTCTTGATAAGCGTTTTGATCGAGCTGATGAGATGTTTCAGGTTAGAGCTGCAGAGCTAAGGAAGATATTGGTGGAACTTGGTCCGGCATATATCAAAATTGCTCAGGCTATATCGTCTCGTTCCGATTTGATACCACCATCGTATCTGGATGAGCTTTCACAGCTGCAAGATCGAATAAGTCCATTTTCCACAGAAGTTGCCTTCAACATGATTGAACAAGAGCTTGGTTTATCCTTGGCTGAAATTTTCTCAGAGATTTCACCCGAGCCTGTTGCTGCTGCTTCTCTTGGCCAGGTTTATCAAGCCAGGCTTCGCAGAACAGGACAGGTTGTTGCTGTTAAAGTGCAAAGACCCGGTGTTCAAGCTGCAATTTCCCTTGACATTTTGATCTTGCGTTTTATGGCTGGGCTGGCTAAAAGAGCAGGAAAATTGAATACTGATCTTCAGGTAATGTTGCAGCTTGCAATTTCTGTATCACATCACTTTGTTGAGTGTGTTCTTGTATTTATGCAGGCAGTTGTCGATGAGTGGGCATCAAGCCTTTTTCGGGAGATGGACTACAATAATGAAGCAAGCAATGGTATCAAGTTCAGGAACTTATATGGTTCTATACAAGATGTGGTGGTTCCTTTGATGTACACAGAGTACACAACTCGCAAGGTCCTTGTCATGGAATGGATTGAGGTATTATACCATTTACCGTTTGATTACTGTATTTTTGCAATTATGGTTCAATGTTCGCATAGATTCAATACCCTAGATAAATTCACTGTTTATCCCAGTGGCAATACATGA

Protein sequence

>MsG0680032308.01.T01

MRLLISTTTPTSLSFPSFFIPTNFSISTSSNRRRRCCYSAKCTTTASISGNDDSFTAKSGYLFDLSATEAETLEDYSISKIATIYYRKPIVVARKLVQTGIAFGKWFGLRFLDKRFDRADEMFQVRAAELRKILVELGPAYIKIAQAISSRSDLIPPSYLDELSQLQDRISPFSTEVAFNMIEQELGLSLAEIFSEISPEPVAAASLGQVYQARLRRTGQVVAVKVQRPGVQAAISLDILILRFMAGLAKRAGKLNTDLQVMLQLAISVSHHFVECVLVFMQAVVDEWASSLFREMDYNNEASNGIKFRNLYGSIQDVVVPLMYTEYTTRKVLVMEWIEVLYHLPFDYCIFAIMVQCSHRFNTLDKFTVYPSGNT*