AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1154250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1154250 MtrunA17_Chr7g0245211 95.565 248 5 3 1 243 1 247 2.55e-172 474
Msa1154250 MtrunA17_Chr1g0152491 44.295 149 72 3 95 240 44 184 1.09e-31 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1154250 AT1G32070.3 66.957 230 62 4 26 242 28 256 3.89e-104 302
Msa1154250 AT1G32070.1 66.234 231 63 4 26 242 27 256 4.04e-103 300
Msa1154250 AT1G32070.2 66.234 231 63 4 26 242 28 257 4.18e-103 300
Msa1154250 AT1G26220.1 41.353 133 67 2 109 240 67 189 2.69e-27 104

Find 81 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAAACTTCCTTATCAATT+TGG 0.118919 7_4:+41688576 None:intergenic
TCCCATGGTTTGGGCGATTA+TGG 0.159377 7_4:-41688236 Msa1154250:three_prime_UTR
GAGATTGAGGGTTAGCATTT+TGG 0.208945 7_4:+41691656 None:intergenic
ATGCCTTCAATGCCACAATT+TGG 0.217116 7_4:-41689838 Msa1154250:CDS
TTCAGCTCAAGGCTGGATTT+TGG 0.218238 7_4:-41691431 Msa1154250:CDS
CTGAAAAGTCCTCAACTTTC+TGG 0.221139 7_4:+41691449 None:intergenic
AATGAACAAAAGATATTAAT+TGG 0.255156 7_4:-41689884 Msa1154250:CDS
CCCATGGTTTGGGCGATTAT+GGG 0.266425 7_4:-41688235 Msa1154250:three_prime_UTR
GAGCAAATATTGTTCTCTTC+AGG 0.294940 7_4:-41690636 Msa1154250:CDS
GAAAACTTCCTTATCAATTT+GGG 0.297922 7_4:+41688577 None:intergenic
GCTGACCCAGAGGGCATAAA+AGG 0.303809 7_4:-41688612 Msa1154250:CDS
AACAGATAATGGTGAGGCTT+TGG 0.342077 7_4:-41688390 Msa1154250:three_prime_UTR
TGCCTTCAATGCCACAATTT+GGG 0.345095 7_4:-41689837 Msa1154250:CDS
CATCCTGTAATTACTGTGTT+AGG 0.361827 7_4:-41688458 Msa1154250:three_prime_UTR
TGAGCATTCATCCCATGGTT+TGG 0.372224 7_4:-41688246 Msa1154250:three_prime_UTR
TGATACAATACAACAGTGTT+TGG 0.374094 7_4:-41691727 None:intergenic
ATGGGATGAATGCTCATTTC+AGG 0.376094 7_4:+41688253 None:intergenic
GAGCATTCATCCCATGGTTT+GGG 0.378208 7_4:-41688245 Msa1154250:three_prime_UTR
GCTGTAACGTTGTAAACTTC+AGG 0.387745 7_4:+41688521 None:intergenic
ATTCTATAGGGCCAAGGTCT+TGG 0.389671 7_4:-41688850 Msa1154250:intron
CAACCTAACACAGTAATTAC+AGG 0.393879 7_4:+41688455 None:intergenic
AATACAACAGTGTTTGGTTT+GGG 0.398489 7_4:-41691721 None:intergenic
GCAGCAGCTAATTTCGATAA+TGG 0.399700 7_4:+41690107 None:intergenic
CAATACAACAGTGTTTGGTT+TGG 0.403562 7_4:-41691722 None:intergenic
AGAAAGAGAATTGAGATTGA+GGG 0.407089 7_4:+41691644 None:intergenic
AAGAAAGAGAATTGAGATTG+AGG 0.421988 7_4:+41691643 None:intergenic
ATTTGCTCAATTGTTCCATC+AGG 0.431467 7_4:+41690651 None:intergenic
AAAGGGTAATTAAGATTAGC+AGG 0.433746 7_4:+41691570 None:intergenic
TAGTATGAAAGTATAAAGAT+TGG 0.439306 7_4:-41688485 Msa1154250:three_prime_UTR
AGGGCATAAAAGGCATGTTC+TGG 0.444015 7_4:-41688602 Msa1154250:CDS
ATCCCAAATTGTGGCATTGA+AGG 0.446021 7_4:+41689835 None:intergenic
TGCCAAAGTACCTGGTAGCC+TGG 0.451629 7_4:+41689800 None:intergenic
TCAGTGTGTAAGAGGAGTAT+AGG 0.457011 7_4:-41688288 Msa1154250:three_prime_UTR
TGAGTAAAGAGTGGATGAAA+GGG 0.463982 7_4:+41691609 None:intergenic
TTCTGGTACCCAAATTGATA+AGG 0.478814 7_4:-41688585 Msa1154250:exon
CCTAGTTGATCCAGGCTACC+AGG 0.486692 7_4:-41689810 Msa1154250:intron
TTGAGTAAAGAGTGGATGAA+AGG 0.490999 7_4:+41691608 None:intergenic
ATAAGAAAGTCACCAGGGTC+AGG 0.499788 7_4:-41690047 Msa1154250:intron
TGGGATGTCCTAGTTGATCC+AGG 0.505992 7_4:-41689818 Msa1154250:CDS
TTTGACCTGTATTAGCAAAA+GGG 0.511224 7_4:+41691553 None:intergenic
ACAACAGTGTTTGGTTTGGG+TGG 0.515395 7_4:-41691718 Msa1154250:five_prime_UTR
TTTGGGAGTCAATTAAATCT+GGG 0.516563 7_4:-41691413 Msa1154250:intron
CCCATAATCGCCCAAACCAT+GGG 0.518854 7_4:+41688235 None:intergenic
TCTTCTTCTTCTGTTAACTC+CGG 0.520081 7_4:+41690720 None:intergenic
ACCCATAATCGCCCAAACCA+TGG 0.539178 7_4:+41688234 None:intergenic
TGGTTGTATCAGTGTGTAAG+AGG 0.540970 7_4:-41688296 Msa1154250:three_prime_UTR
CAAATATTGTTCTCTTCAGG+TGG 0.543956 7_4:-41690633 Msa1154250:CDS
CACCACACAGGTCATCGATC+CGG 0.544650 7_4:-41690739 Msa1154250:CDS
GATTTGATTCTATAGGGCCA+AGG 0.548964 7_4:-41688856 Msa1154250:intron
CAAGAGCTTTACCAAGACCT+TGG 0.549605 7_4:+41688839 None:intergenic
AGCACAAACTCTTGAGGTAG+AGG 0.550148 7_4:+41690690 None:intergenic
AATACCAACACTTAGAGAGT+AGG 0.553304 7_4:+41688181 None:intergenic
TCTCCCTACTCTCTAAGTGT+TGG 0.553519 7_4:-41688185 Msa1154250:three_prime_UTR
CCTGGTAGCCTGGATCAACT+AGG 0.553781 7_4:+41689810 None:intergenic
ACAAAAGATATTAATTGGCA+TGG 0.555166 7_4:-41689879 Msa1154250:CDS
ATACCAACACTTAGAGAGTA+GGG 0.557357 7_4:+41688182 None:intergenic
TGAAATGAGCATTCATCCCA+TGG 0.559753 7_4:-41688251 Msa1154250:three_prime_UTR
AAATTGTGGCATTGAAGGCA+TGG 0.561363 7_4:+41689840 None:intergenic
AACTGAGTTTGAGTAAAGAG+TGG 0.562198 7_4:+41691600 None:intergenic
GGCATGGTCTGATGTAGCAC+GGG 0.584570 7_4:+41689856 None:intergenic
GGGTTTGAAGCTGACCCAGA+GGG 0.584967 7_4:-41688621 Msa1154250:CDS
GATACGCACCTTGTCACAGA+GGG 0.585718 7_4:+41690584 None:intergenic
TCAACAAGCACAAACTCTTG+AGG 0.586333 7_4:+41690684 None:intergenic
ACTTTGTTCGCAGATAGTAA+AGG 0.599684 7_4:-41688769 Msa1154250:intron
AACTAGGACATCCCAAATTG+TGG 0.601622 7_4:+41689826 None:intergenic
TCTTCAAGCCCTCTGTGACA+AGG 0.604383 7_4:-41690592 Msa1154250:intron
ATATTATTATTACCTGACCC+TGG 0.611994 7_4:+41690035 None:intergenic
AGGCATGGTCTGATGTAGCA+CGG 0.613503 7_4:+41689855 None:intergenic
GTTGAAAAGACTGAACCTGA+TGG 0.616747 7_4:-41690666 Msa1154250:CDS
TATTCTATAAGAAAGTCACC+AGG 0.624420 7_4:-41690053 Msa1154250:CDS
TTTCAGCTACCAGAAAGTTG+AGG 0.631114 7_4:-41691458 Msa1154250:intron
CATCTCTTTAACAGGTAGGG+TGG 0.637083 7_4:-41690139 Msa1154250:intron
AACAGGTAGGGTGGCCTCGT+AGG 0.640562 7_4:-41690130 Msa1154250:intron
AAAGAAGTAGAAAATAACAC+TGG 0.648497 7_4:+41688359 None:intergenic
AATTTCGATAATGGCCTACG+AGG 0.672834 7_4:+41690116 None:intergenic
AGGGTTTGAAGCTGACCCAG+AGG 0.695850 7_4:-41688622 Msa1154250:CDS
ATTCTATAAGAAAGTCACCA+GGG 0.724149 7_4:-41690052 Msa1154250:CDS
GATGAAGAATAACACCACAC+AGG 0.731975 7_4:-41690751 Msa1154250:CDS
CTCCGGATCGATGACCTGTG+TGG 0.735613 7_4:+41690737 None:intergenic
AGATACGCACCTTGTCACAG+AGG 0.742856 7_4:+41690583 None:intergenic
CTTTCTTATAGAATACAGAG+AGG 0.746297 7_4:+41690061 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAATAGAATTCAAA+GGG - chr7_4:41688494-41688513 Msa1154250:three_prime_UTR 10.0%
!!! ATTCTATTTAATTTTCAGAA+TGG + chr7_4:41688489-41688508 None:intergenic 15.0%
!! GAAAATTAAATAGAATTCAA+AGG - chr7_4:41688493-41688512 Msa1154250:three_prime_UTR 15.0%
!! AAATTAAATAGAATTCAAAG+GGG - chr7_4:41688495-41688514 Msa1154250:three_prime_UTR 15.0%
!!! GAACATAATCATATTTTTTT+GGG + chr7_4:41688803-41688822 None:intergenic 15.0%
!!! TTTTAGTTTTTTATACGTAT+AGG - chr7_4:41688946-41688965 Msa1154250:intron 15.0%
!! AATATAGATACAAAAATGAA+AGG + chr7_4:41689463-41689482 None:intergenic 15.0%
!! AATGAACAAAAGATATTAAT+TGG - chr7_4:41689972-41689991 Msa1154250:intron 15.0%
!! TTTAAATTAATATGACATCT+AGG + chr7_4:41690414-41690433 None:intergenic 15.0%
!! CATAAAAGATAAAAGTAATT+TGG + chr7_4:41690899-41690918 None:intergenic 15.0%
!! TGAAAAAGTAATAAAACTTT+GGG + chr7_4:41691446-41691465 None:intergenic 15.0%
!! TTGAAAAAGTAATAAAACTT+TGG + chr7_4:41691447-41691466 None:intergenic 15.0%
!!! GGAACATAATCATATTTTTT+TGG + chr7_4:41688804-41688823 None:intergenic 20.0%
!! ATACACTAATAATCATAACA+TGG + chr7_4:41689045-41689064 None:intergenic 20.0%
!! AAATTATTAAACTATACCGA+AGG + chr7_4:41689569-41689588 None:intergenic 20.0%
!! TTGTATTCAAAATCTATGTT+TGG + chr7_4:41690083-41690102 None:intergenic 20.0%
!!! ATAGATTTTGAATACAAACT+CGG - chr7_4:41690086-41690105 Msa1154250:CDS 20.0%
!! CTAAATTAGAAATGAATAGA+CGG - chr7_4:41690205-41690224 Msa1154250:intron 20.0%
!! TTTAAATTAAACAAACCCAA+AGG + chr7_4:41690373-41690392 None:intergenic 20.0%
!!! AATACGTTTTACATAAGTAT+TGG - chr7_4:41690592-41690611 Msa1154250:intron 20.0%
!!! ATACGTTTTACATAAGTATT+GGG - chr7_4:41690593-41690612 Msa1154250:CDS 20.0%
!! ACAAATTTGAAAAACACATT+AGG - chr7_4:41690850-41690869 Msa1154250:intron 20.0%
!!! AAAAACACATTAGGTATTTT+TGG - chr7_4:41690859-41690878 Msa1154250:intron 20.0%
!! GGTTTATGTAAAATAGAAAT+TGG - chr7_4:41691155-41691174 Msa1154250:intron 20.0%
!!! TAGTATGAAAGTATAAAGAT+TGG - chr7_4:41691371-41691390 Msa1154250:intron 20.0%
!! AAAAAGTAATAAAACTTTGG+GGG + chr7_4:41691444-41691463 None:intergenic 20.0%
!! GAAAAAGTAATAAAACTTTG+GGG + chr7_4:41691445-41691464 None:intergenic 20.0%
!!! TTACTTTTTCAAACAGATAA+TGG - chr7_4:41691455-41691474 Msa1154250:CDS 20.0%
!!! TAAGTGTTGGTATTATTTTA+TGG - chr7_4:41691684-41691703 Msa1154250:five_prime_UTR 20.0%
!!! ATTTTATGGATAAATGTTAG+CGG - chr7_4:41691698-41691717 Msa1154250:five_prime_UTR 20.0%
!!! TTGTTGTTTGTTTTCTCTTT+TGG - chr7_4:41688375-41688394 Msa1154250:three_prime_UTR 25.0%
!! TTTAAAGTTTAAACCCACTT+GGG - chr7_4:41688631-41688650 Msa1154250:CDS 25.0%
! AGTCTTAGATTTCAACAATA+AGG + chr7_4:41688825-41688844 None:intergenic 25.0%
!!! TCTTGGCAATCTTTTTATTT+TGG + chr7_4:41688852-41688871 None:intergenic 25.0%
! GAAGAAATAAGTTCTTAATG+TGG + chr7_4:41689441-41689460 None:intergenic 25.0%
! ATTACAATGTTAAACAACAC+AGG + chr7_4:41689598-41689617 None:intergenic 25.0%
! AAATAGTTCATCTCTTTAAC+AGG - chr7_4:41689709-41689728 Msa1154250:intron 25.0%
!!! TGCTTTGAAAAATAGCTATA+TGG - chr7_4:41689769-41689788 Msa1154250:intron 25.0%
! TTTGAAAAATAGCTATATGG+TGG - chr7_4:41689772-41689791 Msa1154250:intron 25.0%
! TTGTGATTAAGTTAATTCGT+TGG - chr7_4:41689860-41689879 Msa1154250:CDS 25.0%
! CACTAAGATATTCATCAAAT+AGG + chr7_4:41689924-41689943 None:intergenic 25.0%
! ACAAAAGATATTAATTGGCA+TGG - chr7_4:41689977-41689996 Msa1154250:intron 25.0%
!! TAGATTTTGAATACAAACTC+GGG - chr7_4:41690087-41690106 Msa1154250:CDS 25.0%
! CATTAAAAAAGTGAACCTTT+AGG + chr7_4:41690291-41690310 None:intergenic 25.0%
!!! CTAAAGGTTCACTTTTTTAA+TGG - chr7_4:41690289-41690308 Msa1154250:intron 25.0%
!!! TCACTTTTTTAATGGTTTCA+TGG - chr7_4:41690297-41690316 Msa1154250:intron 25.0%
! ATTCAAACAGTTGTTGAAAT+GGG - chr7_4:41690487-41690506 Msa1154250:intron 25.0%
!!! ATAAGTATTGGGATTCATTT+AGG - chr7_4:41690604-41690623 Msa1154250:CDS 25.0%
!!! ATTAGGTATTTTTGGATTCA+GGG - chr7_4:41690867-41690886 Msa1154250:intron 25.0%
! TCCAGTATAAACATAGATTA+TGG - chr7_4:41690943-41690962 Msa1154250:intron 25.0%
!!! TGATGTTGATTTGATTCTAT+AGG - chr7_4:41690993-41691012 Msa1154250:intron 25.0%
!!! GATGTTGATTTGATTCTATA+GGG - chr7_4:41690994-41691013 Msa1154250:intron 25.0%
!! TGGAATTTTATCGCAATTTA+GGG - chr7_4:41691215-41691234 Msa1154250:intron 25.0%
! GAAAACTTCCTTATCAATTT+GGG + chr7_4:41691282-41691301 None:intergenic 25.0%
! AGAAAACTTCCTTATCAATT+TGG + chr7_4:41691283-41691302 None:intergenic 25.0%
! AAAGAAGTAGAAAATAACAC+TGG + chr7_4:41691500-41691519 None:intergenic 25.0%
!! TTTTTGTCATCTTGATTGTA+TGG - chr7_4:41691540-41691559 Msa1154250:intron 25.0%
!! TAGCATTTTGGATTGGAATT+TGG + chr7_4:41688191-41688210 None:intergenic 30.0%
AGAAAGAGAATTGAGATTGA+GGG + chr7_4:41688215-41688234 None:intergenic 30.0%
AAGAAAGAGAATTGAGATTG+AGG + chr7_4:41688216-41688235 None:intergenic 30.0%
AAAGGGTAATTAAGATTAGC+AGG + chr7_4:41688289-41688308 None:intergenic 30.0%
! AATTACCCTTTTGCTAATAC+AGG - chr7_4:41688298-41688317 Msa1154250:three_prime_UTR 30.0%
TTTGACCTGTATTAGCAAAA+GGG + chr7_4:41688306-41688325 None:intergenic 30.0%
! TTTTGACCTGTATTAGCAAA+AGG + chr7_4:41688307-41688326 None:intergenic 30.0%
!! TTTTGGGAGTCAATTAAATC+TGG - chr7_4:41688442-41688461 Msa1154250:three_prime_UTR 30.0%
TTTGGGAGTCAATTAAATCT+GGG - chr7_4:41688443-41688462 Msa1154250:three_prime_UTR 30.0%
ACAATTGTTAGCATGTAGAA+TGG - chr7_4:41688561-41688580 Msa1154250:three_prime_UTR 30.0%
GGAATAATTAACTGCTTTAG+AGG - chr7_4:41688582-41688601 Msa1154250:exon 30.0%
TGTTAATCAACTTGCATGTA+TGG - chr7_4:41688608-41688627 Msa1154250:CDS 30.0%
! GTTTAAAGTTTAAACCCACT+TGG - chr7_4:41688630-41688649 Msa1154250:CDS 30.0%
ACCAGAATGTAAGTAAAGTT+TGG + chr7_4:41688745-41688764 None:intergenic 30.0%
!!! TGGCAATCTTTTTATTTTGG+TGG + chr7_4:41688849-41688868 None:intergenic 30.0%
CTAAAAATTGTATCCCCAAA+GGG + chr7_4:41688932-41688951 None:intergenic 30.0%
ACTAAAAATTGTATCCCCAA+AGG + chr7_4:41688933-41688952 None:intergenic 30.0%
TTATTCTTCATCAACCTGAA+AGG + chr7_4:41689097-41689116 None:intergenic 30.0%
AACTAGCATACACATAATCA+CGG + chr7_4:41689344-41689363 None:intergenic 30.0%
TTGAGTTCTTAATGTTGCTA+AGG + chr7_4:41689514-41689533 None:intergenic 30.0%
TATTATATGAAACTCGTCCT+TGG - chr7_4:41689681-41689700 Msa1154250:intron 30.0%
GATGAACTATTTAGTAACCA+AGG + chr7_4:41689701-41689720 None:intergenic 30.0%
CTTTCTTATAGAATACAGAG+AGG + chr7_4:41689798-41689817 None:intergenic 30.0%
TATTCTATAAGAAAGTCACC+AGG - chr7_4:41689803-41689822 Msa1154250:intron 30.0%
ATTCTATAAGAAAGTCACCA+GGG - chr7_4:41689804-41689823 Msa1154250:intron 30.0%
ATATTATTATTACCTGACCC+TGG + chr7_4:41689824-41689843 None:intergenic 30.0%
GATTAAGTTAATTCGTTGGA+TGG - chr7_4:41689864-41689883 Msa1154250:CDS 30.0%
GATGAATATCTTAGTGTACT+TGG - chr7_4:41689928-41689947 Msa1154250:intron 30.0%
! TTTTAATGGTTTCATGGTTC+TGG - chr7_4:41690303-41690322 Msa1154250:intron 30.0%
GATTCAAACAGTTGTTGAAA+TGG - chr7_4:41690486-41690505 Msa1154250:intron 30.0%
! AGTTCTAATGAGGAAATGAA+TGG + chr7_4:41690694-41690713 None:intergenic 30.0%
! TTTGTATGGAAGTTCTAATG+AGG + chr7_4:41690704-41690723 None:intergenic 30.0%
!! AAAAGAACACTGCTTTTGTA+TGG + chr7_4:41690718-41690737 None:intergenic 30.0%
!!! CAGTGTTCTTTTTTGTTTCA+AGG - chr7_4:41690726-41690745 Msa1154250:CDS 30.0%
! ATTTAACTTTCCCTAAGTGA+GGG + chr7_4:41690800-41690819 None:intergenic 30.0%
!!! CATTAGGTATTTTTGGATTC+AGG - chr7_4:41690866-41690885 Msa1154250:intron 30.0%
GCCATAATCTATGTTTATAC+TGG + chr7_4:41690947-41690966 None:intergenic 30.0%
! GTGGAATTTTATCGCAATTT+AGG - chr7_4:41691214-41691233 Msa1154250:intron 30.0%
!! TTTTCAAACAGATAATGGTG+AGG - chr7_4:41691460-41691479 Msa1154250:intron 30.0%
CAACAAAGAACCAAAAACAT+TGG + chr7_4:41691648-41691667 None:intergenic 30.0%
!! TTAGCGGTTATTTTGTTTGA+TGG - chr7_4:41691714-41691733 Msa1154250:five_prime_UTR 30.0%
TGAGTAAAGAGTGGATGAAA+GGG + chr7_4:41688250-41688269 None:intergenic 35.0%
TTGAGTAAAGAGTGGATGAA+AGG + chr7_4:41688251-41688270 None:intergenic 35.0%
AACTGAGTTTGAGTAAAGAG+TGG + chr7_4:41688259-41688278 None:intergenic 35.0%
CAAAAAACACTCTTTCTCAC+TGG - chr7_4:41688322-41688341 Msa1154250:three_prime_UTR 35.0%
GCCAAACTTTACTTACATTC+TGG - chr7_4:41688741-41688760 Msa1154250:intron 35.0%
TCATAAACCACATGTTGTCT+TGG + chr7_4:41688869-41688888 None:intergenic 35.0%
!! TCTTTTCCTTGTTTCCCTTT+GGG - chr7_4:41688915-41688934 Msa1154250:intron 35.0%
AGTCTTAGATTTCAGCAACA+AGG + chr7_4:41688993-41689012 None:intergenic 35.0%
TGAAAGGAGAAACATGTCAA+GGG + chr7_4:41689081-41689100 None:intergenic 35.0%
TCTTCTTCTTCTGTTAACTC+CGG + chr7_4:41689139-41689158 None:intergenic 35.0%
ATTTGCTCAATTGTTCCATC+AGG + chr7_4:41689208-41689227 None:intergenic 35.0%
GAGCAAATATTGTTCTCTTC+AGG - chr7_4:41689220-41689239 Msa1154250:intron 35.0%
CAAATATTGTTCTCTTCAGG+TGG - chr7_4:41689223-41689242 Msa1154250:intron 35.0%
GTGCACTCAATTCATATTTG+AGG - chr7_4:41689402-41689421 Msa1154250:intron 35.0%
AGTTCATCTCTTTAACAGGT+AGG - chr7_4:41689713-41689732 Msa1154250:intron 35.0%
GTTCATCTCTTTAACAGGTA+GGG - chr7_4:41689714-41689733 Msa1154250:intron 35.0%
TTGGTGAAGTTATTTGACAG+AGG - chr7_4:41689947-41689966 Msa1154250:intron 35.0%
TGGTGAAGTTATTTGACAGA+GGG - chr7_4:41689948-41689967 Msa1154250:intron 35.0%
CTCTACTAAAGCAAATGTCT+TGG + chr7_4:41690330-41690349 None:intergenic 35.0%
CAAGACATTTGCTTTAGTAG+AGG - chr7_4:41690328-41690347 Msa1154250:intron 35.0%
CAAGTAGAGTGGTTCAAAAA+GGG + chr7_4:41690756-41690775 None:intergenic 35.0%
TCAAGTAGAGTGGTTCAAAA+AGG + chr7_4:41690757-41690776 None:intergenic 35.0%
! CATTTAACTTTCCCTAAGTG+AGG + chr7_4:41690801-41690820 None:intergenic 35.0%
TTATACTGGAACAGAACACA+AGG + chr7_4:41690933-41690952 None:intergenic 35.0%
ACTTTGTTCGCAGATAGTAA+AGG - chr7_4:41691087-41691106 Msa1154250:intron 35.0%
TTGAATTTCATGCGCTTTCA+TGG - chr7_4:41691134-41691153 Msa1154250:intron 35.0%
!! TTGTATTTTGAATGCAGTCG+TGG - chr7_4:41691195-41691214 Msa1154250:intron 35.0%
TTCTGGTACCCAAATTGATA+AGG - chr7_4:41691271-41691290 Msa1154250:intron 35.0%
CATCCTGTAATTACTGTGTT+AGG - chr7_4:41691398-41691417 Msa1154250:intron 35.0%
CAACCTAACACAGTAATTAC+AGG + chr7_4:41691404-41691423 None:intergenic 35.0%
! GATTATGGGTCCAATGTTTT+TGG - chr7_4:41691635-41691654 Msa1154250:CDS 35.0%
ATACCAACACTTAGAGAGTA+GGG + chr7_4:41691677-41691696 None:intergenic 35.0%
AATACCAACACTTAGAGAGT+AGG + chr7_4:41691678-41691697 None:intergenic 35.0%
!! TGAGGGTTAGCATTTTGGAT+TGG + chr7_4:41688198-41688217 None:intergenic 40.0%
!! GAGATTGAGGGTTAGCATTT+TGG + chr7_4:41688203-41688222 None:intergenic 40.0%
TTTCAGCTACCAGAAAGTTG+AGG - chr7_4:41688398-41688417 Msa1154250:three_prime_UTR 40.0%
CTGAAAAGTCCTCAACTTTC+TGG + chr7_4:41688410-41688429 None:intergenic 40.0%
!! TAGCTTGGTGGTATTGACTT+GGG - chr7_4:41688655-41688674 Msa1154250:intron 40.0%
!! GTGGTATTGACTTGGGAATT+GGG - chr7_4:41688662-41688681 Msa1154250:intron 40.0%
TTGGCCAACTATTGTTCTCA+CGG + chr7_4:41688726-41688745 None:intergenic 40.0%
!!! TTTTTTTGGGCTTAACCCTC+CGG + chr7_4:41688790-41688809 None:intergenic 40.0%
AAGATTGCCAAGACAACATG+TGG - chr7_4:41688859-41688878 Msa1154250:intron 40.0%
!! CTCTTTTCCTTGTTTCCCTT+TGG - chr7_4:41688914-41688933 Msa1154250:intron 40.0%
!! CTTTTCCTTGTTTCCCTTTG+GGG - chr7_4:41688916-41688935 Msa1154250:intron 40.0%
AAGACTGCTGAGACAATATG+CGG - chr7_4:41689007-41689026 Msa1154250:intron 40.0%
CTGAAAGGAGAAACATGTCA+AGG + chr7_4:41689082-41689101 None:intergenic 40.0%
CTTGACATGTTTCTCCTTTC+AGG - chr7_4:41689080-41689099 Msa1154250:intron 40.0%
GATGAAGAATAACACCACAC+AGG - chr7_4:41689105-41689124 Msa1154250:intron 40.0%
TCAACAAGCACAAACTCTTG+AGG + chr7_4:41689175-41689194 None:intergenic 40.0%
GTTGAAAAGACTGAACCTGA+TGG - chr7_4:41689190-41689209 Msa1154250:intron 40.0%
ATCCTCACAAGAGTTTCCTT+CGG - chr7_4:41689550-41689569 Msa1154250:intron 40.0%
! AATTTCGATAATGGCCTACG+AGG + chr7_4:41689743-41689762 None:intergenic 40.0%
GCAGCAGCTAATTTCGATAA+TGG + chr7_4:41689752-41689771 None:intergenic 40.0%
GGTGAAGTTATTTGACAGAG+GGG - chr7_4:41689949-41689968 Msa1154250:intron 40.0%
! AAATTGTGGCATTGAAGGCA+TGG + chr7_4:41690019-41690038 None:intergenic 40.0%
ATGCCTTCAATGCCACAATT+TGG - chr7_4:41690018-41690037 Msa1154250:intron 40.0%
TGCCTTCAATGCCACAATTT+GGG - chr7_4:41690019-41690038 Msa1154250:intron 40.0%
! ATCCCAAATTGTGGCATTGA+AGG + chr7_4:41690024-41690043 None:intergenic 40.0%
AACTAGGACATCCCAAATTG+TGG + chr7_4:41690033-41690052 None:intergenic 40.0%
TGCTCTCATATGTAGCCTAA+AGG - chr7_4:41690273-41690292 Msa1154250:intron 40.0%
AAAGGCCATATGACATATGG+TGG + chr7_4:41690355-41690374 None:intergenic 40.0%
ACCATATGTCATATGGCCTT+TGG - chr7_4:41690354-41690373 Msa1154250:intron 40.0%
CCATATGTCATATGGCCTTT+GGG - chr7_4:41690355-41690374 Msa1154250:intron 40.0%
CTAACGAACATCAAGTAGAG+TGG + chr7_4:41690767-41690786 None:intergenic 40.0%
GATTTGATTCTATAGGGCCA+AGG - chr7_4:41691000-41691019 Msa1154250:intron 40.0%
! TCATTCGAGCTCTTTTGCAA+AGG - chr7_4:41691049-41691068 Msa1154250:intron 40.0%
! CATTCGAGCTCTTTTGCAAA+GGG - chr7_4:41691050-41691069 Msa1154250:intron 40.0%
GCTGTAACGTTGTAAACTTC+AGG + chr7_4:41691338-41691357 None:intergenic 40.0%
! AACAGATAATGGTGAGGCTT+TGG - chr7_4:41691466-41691485 Msa1154250:intron 40.0%
TGGTTGTATCAGTGTGTAAG+AGG - chr7_4:41691560-41691579 Msa1154250:CDS 40.0%
! TCAGTGTGTAAGAGGAGTAT+AGG - chr7_4:41691568-41691587 Msa1154250:CDS 40.0%
ATGGGATGAATGCTCATTTC+AGG + chr7_4:41691606-41691625 None:intergenic 40.0%
TGAAATGAGCATTCATCCCA+TGG - chr7_4:41691605-41691624 Msa1154250:CDS 40.0%
! GTTGAGGACTTTTCAGCTCA+AGG - chr7_4:41688414-41688433 Msa1154250:three_prime_UTR 45.0%
! TTCAGCTCAAGGCTGGATTT+TGG - chr7_4:41688425-41688444 Msa1154250:three_prime_UTR 45.0%
! TCAGCTCAAGGCTGGATTTT+GGG - chr7_4:41688426-41688445 Msa1154250:three_prime_UTR 45.0%
!! CTAGCTTGGTGGTATTGACT+TGG - chr7_4:41688654-41688673 Msa1154250:intron 45.0%
!! GGTGGTATTGACTTGGGAAT+TGG - chr7_4:41688661-41688680 Msa1154250:intron 45.0%
TTGAACCTGAGACCTTGAGA+AGG + chr7_4:41688696-41688715 None:intergenic 45.0%
TCTCCCGTGAGAACAATAGT+TGG - chr7_4:41688719-41688738 Msa1154250:intron 45.0%
TGGCCAACTATTGTTCTCAC+GGG + chr7_4:41688725-41688744 None:intergenic 45.0%
CTTACATTCTGGTCGAACTC+CGG - chr7_4:41688752-41688771 Msa1154250:intron 45.0%
TGTATCCCCAAAGGGAAACA+AGG + chr7_4:41688924-41688943 None:intergenic 45.0%
AGCACAAACTCTTGAGGTAG+AGG + chr7_4:41689169-41689188 None:intergenic 45.0%
ATGAATTGAGTGCACGCACA+TGG + chr7_4:41689397-41689416 None:intergenic 45.0%
TACCGAAGGAAACTCTTGTG+AGG + chr7_4:41689555-41689574 None:intergenic 45.0%
CATCTCTTTAACAGGTAGGG+TGG - chr7_4:41689717-41689736 Msa1154250:intron 45.0%
ATAAGAAAGTCACCAGGGTC+AGG - chr7_4:41689809-41689828 Msa1154250:intron 45.0%
! TGTTTGGTTGCCAAAGTACC+TGG + chr7_4:41690067-41690086 None:intergenic 45.0%
GAGGACCACCATATGTCATA+TGG - chr7_4:41690347-41690366 Msa1154250:intron 45.0%
CCCAAAGGCCATATGACATA+TGG + chr7_4:41690358-41690377 None:intergenic 45.0%
TAGAGTGGTTCAAAAAGGGC+TGG + chr7_4:41690752-41690771 None:intergenic 45.0%
TACTGGAACAGAACACAAGG+AGG + chr7_4:41690930-41690949 None:intergenic 45.0%
ATTCTATAGGGCCAAGGTCT+TGG - chr7_4:41691006-41691025 Msa1154250:intron 45.0%
CAAGAGCTTTACCAAGACCT+TGG + chr7_4:41691020-41691039 None:intergenic 45.0%
! GCTCTTTTGCAAAGGGACAT+CGG - chr7_4:41691057-41691076 Msa1154250:intron 45.0%
! ACATGCCTTTTATGCCCTCT+GGG + chr7_4:41691252-41691271 None:intergenic 45.0%
! AACATGCCTTTTATGCCCTC+TGG + chr7_4:41691253-41691272 None:intergenic 45.0%
! AGGGCATAAAAGGCATGTTC+TGG - chr7_4:41691254-41691273 Msa1154250:intron 45.0%
TGAGCATTCATCCCATGGTT+TGG - chr7_4:41691610-41691629 Msa1154250:CDS 45.0%
GAGCATTCATCCCATGGTTT+GGG - chr7_4:41691611-41691630 Msa1154250:CDS 45.0%
TCTCCCTACTCTCTAAGTGT+TGG - chr7_4:41691671-41691690 Msa1154250:exon 45.0%
! AGGACTTTTCAGCTCAAGGC+TGG - chr7_4:41688418-41688437 Msa1154250:three_prime_UTR 50.0%
!! TAAACCCACTTGGGCTAGCT+TGG - chr7_4:41688640-41688659 Msa1154250:CDS 50.0%
TCTTCAAGCCCTCTGTGACA+AGG - chr7_4:41689264-41689283 Msa1154250:intron 50.0%
GATACGCACCTTGTCACAGA+GGG + chr7_4:41689275-41689294 None:intergenic 50.0%
AGATACGCACCTTGTCACAG+AGG + chr7_4:41689276-41689295 None:intergenic 50.0%
AGGCATGGTCTGATGTAGCA+CGG + chr7_4:41690004-41690023 None:intergenic 50.0%
TGGGATGTCCTAGTTGATCC+AGG - chr7_4:41690038-41690057 Msa1154250:intron 50.0%
ATCCAGGCTACCAGGTACTT+TGG - chr7_4:41690054-41690073 Msa1154250:CDS 50.0%
ACTTTCCCTAAGTGAGGGTG+TGG + chr7_4:41690795-41690814 None:intergenic 50.0%
! TCCCATGGTTTGGGCGATTA+TGG - chr7_4:41691620-41691639 Msa1154250:CDS 50.0%
CCCATAATCGCCCAAACCAT+GGG + chr7_4:41691624-41691643 None:intergenic 50.0%
! CCCATGGTTTGGGCGATTAT+GGG - chr7_4:41691621-41691640 Msa1154250:CDS 50.0%
ACCCATAATCGCCCAAACCA+TGG + chr7_4:41691625-41691644 None:intergenic 50.0%
ACCACCAAGCTAGCCCAAGT+GGG + chr7_4:41688647-41688666 None:intergenic 55.0%
TACCACCAAGCTAGCCCAAG+TGG + chr7_4:41688648-41688667 None:intergenic 55.0%
! TGGGAGTGTGCTCCTTCTCA+AGG - chr7_4:41688681-41688700 Msa1154250:intron 55.0%
GTGCTCCTTCTCAAGGTCTC+AGG - chr7_4:41688688-41688707 Msa1154250:intron 55.0%
TGGTCGAACTCCGGATTACC+AGG - chr7_4:41688761-41688780 Msa1154250:intron 55.0%
GGTCGAACTCCGGATTACCA+GGG - chr7_4:41688762-41688781 Msa1154250:intron 55.0%
ACTCCGGATTACCAGGGAAC+CGG - chr7_4:41688768-41688787 Msa1154250:intron 55.0%
CACCACACAGGTCATCGATC+CGG - chr7_4:41689117-41689136 Msa1154250:intron 55.0%
GGCATGGTCTGATGTAGCAC+GGG + chr7_4:41690003-41690022 None:intergenic 55.0%
CCTGGTAGCCTGGATCAACT+AGG + chr7_4:41690049-41690068 None:intergenic 55.0%
CCTAGTTGATCCAGGCTACC+AGG - chr7_4:41690046-41690065 Msa1154250:intron 55.0%
! TGCCAAAGTACCTGGTAGCC+TGG + chr7_4:41690059-41690078 None:intergenic 55.0%
! TTCCCTAAGTGAGGGTGTGG+CGG + chr7_4:41690792-41690811 None:intergenic 55.0%
! AGGGTTTGAAGCTGACCCAG+AGG - chr7_4:41691234-41691253 Msa1154250:intron 55.0%
! GGGTTTGAAGCTGACCCAGA+GGG - chr7_4:41691235-41691254 Msa1154250:intron 55.0%
! GCTGACCCAGAGGGCATAAA+AGG - chr7_4:41691244-41691263 Msa1154250:intron 55.0%
!! ACCCACTTGGGCTAGCTTGG+TGG - chr7_4:41688643-41688662 Msa1154250:CDS 60.0%
CCTCCGGTTCCCTGGTAATC+CGG + chr7_4:41688774-41688793 None:intergenic 60.0%
CGGATTACCAGGGAACCGGA+GGG - chr7_4:41688772-41688791 Msa1154250:CDS 60.0%
CTCCGGATCGATGACCTGTG+TGG + chr7_4:41689122-41689141 None:intergenic 60.0%
AACAGGTAGGGTGGCCTCGT+AGG - chr7_4:41689726-41689745 Msa1154250:intron 60.0%
ACCCGCCACACCCTCACTTA+GGG - chr7_4:41690787-41690806 Msa1154250:intron 60.0%
! TCCCTAAGTGAGGGTGTGGC+GGG + chr7_4:41690791-41690810 None:intergenic 60.0%
CCGGATTACCAGGGAACCGG+AGG - chr7_4:41688771-41688790 Msa1154250:CDS 65.0%
GGCTTAACCCTCCGGTTCCC+TGG + chr7_4:41688782-41688801 None:intergenic 65.0%
GACCCGCCACACCCTCACTT+AGG - chr7_4:41690786-41690805 Msa1154250:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 41688139 41691739 41688139 ID=Msa1154250;Name=Msa1154250
chr7_4 mRNA 41688139 41691739 41688139 ID=Msa1154250-mRNA-1;Parent=Msa1154250;Name=Msa1154250-mRNA-1;_AED=0.05;_eAED=0.05;_QI=66|1|1|1|1|1|7|451|243
chr7_4 exon 41688139 41688666 41688139 ID=Msa1154250-mRNA-1:exon:10173;Parent=Msa1154250-mRNA-1
chr7_4 exon 41688770 41688863 41688770 ID=Msa1154250-mRNA-1:exon:10172;Parent=Msa1154250-mRNA-1
chr7_4 exon 41689811 41689911 41689811 ID=Msa1154250-mRNA-1:exon:10171;Parent=Msa1154250-mRNA-1
chr7_4 exon 41690048 41690147 41690048 ID=Msa1154250-mRNA-1:exon:10170;Parent=Msa1154250-mRNA-1
chr7_4 exon 41690593 41690776 41690593 ID=Msa1154250-mRNA-1:exon:10169;Parent=Msa1154250-mRNA-1
chr7_4 exon 41691414 41691474 41691414 ID=Msa1154250-mRNA-1:exon:10168;Parent=Msa1154250-mRNA-1
chr7_4 exon 41691559 41691739 41691559 ID=Msa1154250-mRNA-1:exon:10167;Parent=Msa1154250-mRNA-1
chr7_4 five_prime_UTR 41691674 41691739 41691674 ID=Msa1154250-mRNA-1:five_prime_utr;Parent=Msa1154250-mRNA-1
chr7_4 CDS 41691559 41691673 41691559 ID=Msa1154250-mRNA-1:cds;Parent=Msa1154250-mRNA-1
chr7_4 CDS 41691414 41691474 41691414 ID=Msa1154250-mRNA-1:cds;Parent=Msa1154250-mRNA-1
chr7_4 CDS 41690593 41690776 41690593 ID=Msa1154250-mRNA-1:cds;Parent=Msa1154250-mRNA-1
chr7_4 CDS 41690048 41690147 41690048 ID=Msa1154250-mRNA-1:cds;Parent=Msa1154250-mRNA-1
chr7_4 CDS 41689811 41689911 41689811 ID=Msa1154250-mRNA-1:cds;Parent=Msa1154250-mRNA-1
chr7_4 CDS 41688770 41688863 41688770 ID=Msa1154250-mRNA-1:cds;Parent=Msa1154250-mRNA-1
chr7_4 CDS 41688590 41688666 41688590 ID=Msa1154250-mRNA-1:cds;Parent=Msa1154250-mRNA-1
chr7_4 three_prime_UTR 41688139 41688589 41688139 ID=Msa1154250-mRNA-1:three_prime_utr;Parent=Msa1154250-mRNA-1
Gene Sequence

>Msa1154250

ATGCTAACCCTCAATCTCAATTCTCTTTCTTCTTCAACTCTTCCCTTTCATCCACTCTTTACTCAAACTCAGTTATTACTTCCTGCTAATCTTAATTACCCTTTTGCTAATACAGCTACCAGAAAGTTGAGGACTTTTCAGCTCAAGGCTGGATTTTGGGAGTCAATTAAATCTGGGTTGATGAAGAATAACACCACACAGGTCATCGATCCGGAGTTAACAGAAGAAGAAGACGAAGAACCTCTACCTCAAGAGTTTGTGCTTGTTGAAAAGACTGAACCTGATGGAACAATTGAGCAAATATTGTTCTCTTCAGGTGGAGATCTTGATGTTTATGATCTTCAAGCCCTCTGTGACAAGGTAGGGTGGCCTCGTAGGCCATTATCGAAATTAGCTGCTGCTTTGAAAAATAGCTATATGGTGGCCTCTCTGTATTCTATAAGAAAGTCACCAGGGTCAGAGGGGAATGAACAAAAGATATTAATTGGCATGGCCCGTGCTACATCAGACCATGCCTTCAATGCCACAATTTGGGATGTCCTAGTTGATCCAGGCTACCAGGGCCAAGGTCTTGGTAAAGCTCTTGTAGAGAAACTCATTCGAGCTCTTTTGCAAAGGGACATCGGTAATATTACTTTGTTCGCAGATAGTAAAGTCGTGGAATTTTATCGCAATTTAGGGTTTGAAGCTGACCCAGAGGGCATAAAAGGCATGTTCTGGTACCCAAATTGA

Protein sequence

>Msa1154250

MLTLNLNSLSSSTLPFHPLFTQTQLLLPANLNYPFANTATRKLRTFQLKAGFWESIKSGLMKNNTTQVIDPELTEEEDEEPLPQEFVLVEKTEPDGTIEQILFSSGGDLDVYDLQALCDKVGWPRRPLSKLAAALKNSYMVASLYSIRKSPGSEGNEQKILIGMARATSDHAFNATIWDVLVDPGYQGQGLGKALVEKLIRALLQRDIGNITLFADSKVVEFYRNLGFEADPEGIKGMFWYPN*