AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1348630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1348630 MtrunA17_Chr3g0139181 88.983 118 11 2 1 117 1 117 4.15e-65 192
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1348630 AT2G24395.1 73.529 68 18 0 47 114 60 127 1.62e-32 111

Find 46 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTTCCTTCATTCAATTA+AGG 0.229113 tig0010471:-35497 Msa1348630:intron
GACGGTAGATACGGTTGTTT+GGG 0.293202 tig0010471:+35720 None:intergenic
ATAATAACGTACGGCTTTGC+AGG 0.334178 tig0010471:+35688 None:intergenic
GGAGGAGAGAAGAGGATTAA+TGG 0.361525 tig0010471:-35969 Msa1348630:exon
CGACGGTAGATACGGTTGTT+TGG 0.368495 tig0010471:+35719 None:intergenic
GAGATGATGAATTAATTAAT+AGG 0.374694 tig0010471:+35523 None:intergenic
TGTTGCTTACTACTACTATA+AGG 0.386103 tig0010471:+35869 None:intergenic
CATGGGATCTTATTAAGTTC+AGG 0.420036 tig0010471:+32538 None:intergenic
ACCAAGGCTACTACTGTGTC+TGG 0.422808 tig0010471:+35898 None:intergenic
GCTACTACTGTGTCTGGAAC+TGG 0.434325 tig0010471:+35904 None:intergenic
GTGGCACATGGCTTAATAAT+CGG 0.443530 tig0010471:+32582 None:intergenic
ATAGGAGAATCGTTGAAATC+AGG 0.450197 tig0010471:+35541 None:intergenic
GAAGGGAGGGTGAGAATAAA+CGG 0.455974 tig0010471:+35932 None:intergenic
AAATATGCCCTCGTTATTTG+TGG 0.460805 tig0010471:+32463 None:intergenic
GAAGACTTCTGTTAATCAAA+TGG 0.466134 tig0010471:+32560 None:intergenic
AAAGCACCTTAATTGAATGA+AGG 0.534547 tig0010471:+35491 None:intergenic
TGCATACATTATGCAACACA+TGG 0.536225 tig0010471:+32520 None:intergenic
TCCAGACACAGTAGTAGCCT+TGG 0.537296 tig0010471:-35899 Msa1348630:CDS
ATGGACATCGACGGTAGATA+CGG 0.539591 tig0010471:+35711 None:intergenic
CACGATAAAGTGTGTGAAGG+TGG 0.544142 tig0010471:-35834 Msa1348630:CDS
GATAAGGAGGAGAAGAAATG+AGG 0.556274 tig0010471:-36031 None:intergenic
TGTGAACCTTGCAATGGAAA+AGG 0.558985 tig0010471:-35791 Msa1348630:CDS
TAACGTACGGCTTTGCAGGA+TGG 0.582498 tig0010471:+35692 None:intergenic
TGTCTGGAACTGGAAATTGA+AGG 0.585233 tig0010471:+35914 None:intergenic
TTGCAATGGAAAAGGATGGT+TGG 0.588776 tig0010471:-35783 Msa1348630:CDS
GTTAATCAAATGGTGGCACA+TGG 0.595079 tig0010471:+32570 None:intergenic
GGAACTGGAAATTGAAGGGA+GGG 0.595986 tig0010471:+35919 None:intergenic
CCTCTTCTCTCCTCCCACGA+TGG 0.612788 tig0010471:+35977 None:intergenic
ATCATGTGTGAACCTTGCAA+TGG 0.614562 tig0010471:-35797 Msa1348630:CDS
GTCTGGAACTGGAAATTGAA+GGG 0.615620 tig0010471:+35915 None:intergenic
CTCAACTGATCCATCGTGGG+AGG 0.623391 tig0010471:-35987 Msa1348630:five_prime_UTR
CCATCGTGGGAGGAGAGAAG+AGG 0.627180 tig0010471:-35977 Msa1348630:five_prime_UTR
TCACTCAACTGATCCATCGT+GGG 0.640302 tig0010471:-35990 Msa1348630:five_prime_UTR
TTCACTCAACTGATCCATCG+TGG 0.640531 tig0010471:-35991 Msa1348630:five_prime_UTR
GACTTCTGTTAATCAAATGG+TGG 0.643305 tig0010471:+32563 None:intergenic
TGTGTTGTGTTCAAACTGCA+AGG 0.643783 tig0010471:-35584 Msa1348630:CDS
GCACATGGCTTAATAATCGG+TGG 0.647737 tig0010471:+32585 None:intergenic
CATCACGATAAAGTGTGTGA+AGG 0.657024 tig0010471:-35837 Msa1348630:CDS
TACTATAAGGAACAATACCA+AGG 0.662512 tig0010471:+35882 None:intergenic
TGATTTACCACAAATAACGA+GGG 0.668371 tig0010471:-32470 Msa1348630:three_prime_UTR
TGGAACTGGAAATTGAAGGG+AGG 0.669431 tig0010471:+35918 None:intergenic
ACGGTAGATACGGTTGTTTG+GGG 0.669917 tig0010471:+35721 None:intergenic
AACCTTGCAATGGAAAAGGA+TGG 0.676800 tig0010471:-35787 Msa1348630:CDS
GCATACATTATGCAACACAT+GGG 0.685891 tig0010471:+32521 None:intergenic
GTGATTTACCACAAATAACG+AGG 0.687100 tig0010471:-32471 Msa1348630:three_prime_UTR
CTTTGCAGGATGGACATCGA+CGG 0.734158 tig0010471:+35702 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCAAATATAATATATGT+TGG + tig0010471:34895-34914 None:intergenic 10.0%
!! TATTATTTAAGAAAAAAAGG+TGG - tig0010471:32997-33016 Msa1348630:intron 15.0%
!! ATAATAAAAATGAAATACAG+AGG + tig0010471:33740-33759 None:intergenic 15.0%
!!! TTCATTTTTATTATATGTTC+TGG - tig0010471:33746-33765 Msa1348630:intron 15.0%
!! ATGATAAATTGTAATAATAG+AGG - tig0010471:35256-35275 Msa1348630:intron 15.0%
!! TAACTTAAATAAAACTATGA+AGG + tig0010471:35486-35505 None:intergenic 15.0%
!! AAATAAACGATAATAACGTA+CGG + tig0010471:32738-32757 None:intergenic 20.0%
!! TATTGTAATATAATTGTTGC+AGG - tig0010471:32800-32819 Msa1348630:intron 20.0%
!! GAGATGATGAATTAATTAAT+AGG + tig0010471:32894-32913 None:intergenic 20.0%
!! AACAAACAAGTAATCAAATT+TGG - tig0010471:33147-33166 Msa1348630:intron 20.0%
!!! AAAAAGGTATAGACTTAAAA+AGG + tig0010471:33665-33684 None:intergenic 20.0%
!! ATTGGAACTACAAAATAAAA+AGG + tig0010471:33681-33700 None:intergenic 20.0%
!! AATTCAAAAAATCAAAACAC+AGG - tig0010471:33774-33793 Msa1348630:intron 20.0%
!! ATTCAAAAAATCAAAACACA+GGG - tig0010471:33775-33794 Msa1348630:intron 20.0%
!! AGCAAAAAACTTTAAACATT+AGG - tig0010471:34133-34152 Msa1348630:intron 20.0%
!!! TGATGATGACTATTTTAATA+TGG - tig0010471:34690-34709 Msa1348630:intron 20.0%
!! AAAAAAGTTAATACCTTAGA+AGG - tig0010471:35279-35298 Msa1348630:intron 20.0%
!! GAAGATTATATATATAAGAG+AGG - tig0010471:35364-35383 Msa1348630:intron 20.0%
!! CTTGACAAAAAAAAAAACTT+TGG - tig0010471:35520-35539 Msa1348630:exon 20.0%
!!! AAAAAAACTTTGGAAGTATA+CGG - tig0010471:35530-35549 Msa1348630:exon 20.0%
! TCATTTCCTTCATTCAATTA+AGG - tig0010471:32917-32936 Msa1348630:intron 25.0%
! ACAAAACAATAGTAAGAGAA+TGG + tig0010471:33260-33279 None:intergenic 25.0%
! CAAAATCATAAAGTAAACAG+AGG - tig0010471:33303-33322 Msa1348630:intron 25.0%
! ACGCATATATATTTGTATCA+TGG - tig0010471:33370-33389 Msa1348630:intron 25.0%
! TATAAGCTTCAACATAATCA+CGG + tig0010471:33426-33445 None:intergenic 25.0%
! AAAACAGCTATAACTTCATA+CGG + tig0010471:33641-33660 None:intergenic 25.0%
! TCTGATAATCTGATCTTAAT+TGG - tig0010471:33820-33839 Msa1348630:intron 25.0%
! TAGGTTAATTAAGAGTCTAA+TGG + tig0010471:33981-34000 None:intergenic 25.0%
!!! AAAGTTTTTTGCTAAAGATG+TGG + tig0010471:34126-34145 None:intergenic 25.0%
! AACTTTAAACATTAGGAATG+CGG - tig0010471:34140-34159 Msa1348630:intron 25.0%
!!! ATTCAAGCTCTGTTTTAAAA+AGG + tig0010471:34253-34272 None:intergenic 25.0%
!!! ATGACTATTTTAATATGGAG+AGG - tig0010471:34695-34714 Msa1348630:intron 25.0%
!!! TGACTATTTTAATATGGAGA+GGG - tig0010471:34696-34715 Msa1348630:intron 25.0%
!!! ATCCAAAGTTATTTCTACTT+GGG + tig0010471:34759-34778 None:intergenic 25.0%
!!! AATCCAAAGTTATTTCTACT+TGG + tig0010471:34760-34779 None:intergenic 25.0%
! ATATAGATTCCATTCAAACA+AGG + tig0010471:34859-34878 None:intergenic 25.0%
!!! AAACTTTTTTCGAGTTGATT+CGG + tig0010471:34976-34995 None:intergenic 25.0%
! ATAAAACTATGAAGGTAGAA+AGG + tig0010471:35478-35497 None:intergenic 25.0%
!! CAAACACATTATTTGAAGTA+GGG + tig0010471:35729-35748 None:intergenic 25.0%
TACTATAAGGAACAATACCA+AGG + tig0010471:32535-32554 None:intergenic 30.0%
! TGTTGCTTACTACTACTATA+AGG + tig0010471:32548-32567 None:intergenic 30.0%
GTAATATAATTGTTGCAGGT+TGG - tig0010471:32804-32823 Msa1348630:intron 30.0%
! AAAGCACCTTAATTGAATGA+AGG + tig0010471:32926-32945 None:intergenic 30.0%
AAACAATAGTAAGAGAATGG+TGG + tig0010471:33257-33276 None:intergenic 30.0%
TATCATAAGACTGTTTGACT+TGG + tig0010471:33520-33539 None:intergenic 30.0%
ACAAACCTTACTGCTAAATT+TGG - tig0010471:33613-33632 Msa1348630:intron 30.0%
TTCTGCAATATGATAAAGCT+TGG + tig0010471:33716-33735 None:intergenic 30.0%
AAAAATCAAAACACAGGGAA+TGG - tig0010471:33780-33799 Msa1348630:intron 30.0%
!! ATAAACTGTCCGATTTTGAT+CGG - tig0010471:33899-33918 Msa1348630:intron 30.0%
TGGTATAACAAATAGATTGC+TGG + tig0010471:33961-33980 None:intergenic 30.0%
!!! CCTTGAAATGTGGTTTTAAT+AGG + tig0010471:34000-34019 None:intergenic 30.0%
CCTATTAAAACCACATTTCA+AGG - tig0010471:33997-34016 Msa1348630:intron 30.0%
GTTTAACCTATTAACTCTGT+TGG - tig0010471:34037-34056 Msa1348630:intron 30.0%
AGGCTAATAACAATCACATA+AGG - tig0010471:34089-34108 Msa1348630:intron 30.0%
ACTTTAAACATTAGGAATGC+GGG - tig0010471:34141-34160 Msa1348630:intron 30.0%
AAGGTAAGTATATGATGTTG+TGG + tig0010471:34234-34253 None:intergenic 30.0%
! ACAATTGTACCTTGTTTGAA+TGG - tig0010471:34847-34866 Msa1348630:intron 30.0%
! AGTCTTGTAATCTCCAAATT+AGG - tig0010471:34938-34957 Msa1348630:intron 30.0%
GTCTTGTAATCTCCAAATTA+GGG - tig0010471:34939-34958 Msa1348630:intron 30.0%
!! GATAATTGATTCGTTGAACT+TGG - tig0010471:35008-35027 Msa1348630:intron 30.0%
GTTTGTTTAAAAGCCTTCTA+AGG + tig0010471:35295-35314 None:intergenic 30.0%
! AAGTTTTGCAAATAGTAGAG+AGG - tig0010471:35342-35361 Msa1348630:intron 30.0%
! TTTAAAGTTCACGAACTACT+CGG + tig0010471:35589-35608 None:intergenic 30.0%
!!! CCTTTTTTTTAGCTCAAGTT+CGG + tig0010471:35616-35635 None:intergenic 30.0%
! GCAAACACATTATTTGAAGT+AGG + tig0010471:35730-35749 None:intergenic 30.0%
GAAGACTTCTGTTAATCAAA+TGG + tig0010471:35857-35876 None:intergenic 30.0%
TGATTTACCACAAATAACGA+GGG - tig0010471:35944-35963 Msa1348630:CDS 30.0%
! TTGGTATGTGACTTTTGTGA+AGG - tig0010471:32650-32669 Msa1348630:intron 35.0%
!!! GGGCTTTGACATTAGTTTTT+TGG + tig0010471:32676-32695 None:intergenic 35.0%
ATAGGAGAATCGTTGAAATC+AGG + tig0010471:32876-32895 None:intergenic 35.0%
GTATTCTACTCTACATGCAT+TGG + tig0010471:33027-33046 None:intergenic 35.0%
TCAAGTGAGCAGTTAAATGA+AGG + tig0010471:33053-33072 None:intergenic 35.0%
! TTTTAGTGATTCACTCCTCT+TGG + tig0010471:33187-33206 None:intergenic 35.0%
! GCTTTTGTTAAAATCAGCAG+TGG - tig0010471:33452-33471 Msa1348630:intron 35.0%
GCTTGGATAGCAATTAGAAT+TGG + tig0010471:33699-33718 None:intergenic 35.0%
AGGTTAAACTTGCGAAAGTT+GGG + tig0010471:34026-34045 None:intergenic 35.0%
TAGGTTAAACTTGCGAAAGT+TGG + tig0010471:34027-34046 None:intergenic 35.0%
TCAAGACCAACAGAGTTAAT+AGG + tig0010471:34046-34065 None:intergenic 35.0%
!! TATTAACTCTGTTGGTCTTG+AGG - tig0010471:34045-34064 Msa1348630:intron 35.0%
!! ATTAACTCTGTTGGTCTTGA+GGG - tig0010471:34046-34065 Msa1348630:intron 35.0%
AAGTACAGTTCAGAGCTTAT+TGG - tig0010471:34297-34316 Msa1348630:intron 35.0%
AGCAAACTCTAACTTATCAC+AGG + tig0010471:34387-34406 None:intergenic 35.0%
TTGTAGTAATACACAGCACT+CGG - tig0010471:34435-34454 Msa1348630:intron 35.0%
TGCACTCTAACTGTTCAAAA+CGG + tig0010471:34513-34532 None:intergenic 35.0%
TTTGAACAGTTAGAGTGCAT+TGG - tig0010471:34514-34533 Msa1348630:intron 35.0%
GTTTGTATACATGTTTGCCA+GGG + tig0010471:34552-34571 None:intergenic 35.0%
TGTTTGTATACATGTTTGCC+AGG + tig0010471:34553-34572 None:intergenic 35.0%
GCAAACATGTATACAAACAC+TGG - tig0010471:34554-34573 Msa1348630:intron 35.0%
CTCCCAAGTAGAAATAACTT+TGG - tig0010471:34754-34773 Msa1348630:intron 35.0%
! TATGGTGCCAAGACTTAATT+AGG - tig0010471:34797-34816 Msa1348630:intron 35.0%
TTCGGATCCTAATTAAGTCT+TGG + tig0010471:34807-34826 None:intergenic 35.0%
! AGAAGTCAAAGTGCTATCTT+CGG + tig0010471:34825-34844 None:intergenic 35.0%
!! AGTTGAACTTGAGTTGAGTA+TGG - tig0010471:35086-35105 Msa1348630:intron 35.0%
ATTTGCAAAACTTCCGATGT+GGG + tig0010471:35335-35354 None:intergenic 35.0%
TATTTGCAAAACTTCCGATG+TGG + tig0010471:35336-35355 None:intergenic 35.0%
CCGAACTTGAGCTAAAAAAA+AGG - tig0010471:35613-35632 Msa1348630:intron 35.0%
GACTTCTGTTAATCAAATGG+TGG + tig0010471:35854-35873 None:intergenic 35.0%
CATGGGATCTTATTAAGTTC+AGG + tig0010471:35879-35898 None:intergenic 35.0%
GCATACATTATGCAACACAT+GGG + tig0010471:35896-35915 None:intergenic 35.0%
TGCATACATTATGCAACACA+TGG + tig0010471:35897-35916 None:intergenic 35.0%
GTGATTTACCACAAATAACG+AGG - tig0010471:35943-35962 Msa1348630:CDS 35.0%
AAATATGCCCTCGTTATTTG+TGG + tig0010471:35954-35973 None:intergenic 35.0%
! GTCTGGAACTGGAAATTGAA+GGG + tig0010471:32502-32521 None:intergenic 40.0%
! TGTCTGGAACTGGAAATTGA+AGG + tig0010471:32503-32522 None:intergenic 40.0%
CATCACGATAAAGTGTGTGA+AGG - tig0010471:32577-32596 Msa1348630:three_prime_UTR 40.0%
ATCATGTGTGAACCTTGCAA+TGG - tig0010471:32617-32636 Msa1348630:three_prime_UTR 40.0%
TGTGAACCTTGCAATGGAAA+AGG - tig0010471:32623-32642 Msa1348630:three_prime_UTR 40.0%
AACCTTGCAATGGAAAAGGA+TGG - tig0010471:32627-32646 Msa1348630:three_prime_UTR 40.0%
! AACCATCCTTTTCCATTGCA+AGG + tig0010471:32632-32651 None:intergenic 40.0%
TTGCAATGGAAAAGGATGGT+TGG - tig0010471:32631-32650 Msa1348630:three_prime_UTR 40.0%
ATAATAACGTACGGCTTTGC+AGG + tig0010471:32729-32748 None:intergenic 40.0%
TGTGTTGTGTTCAAACTGCA+AGG - tig0010471:32830-32849 Msa1348630:intron 40.0%
CAATAGTAAGAGAATGGTGG+TGG + tig0010471:33254-33273 None:intergenic 40.0%
!! TGTTTGACTTGGTGCATGTT+TGG + tig0010471:33509-33528 None:intergenic 40.0%
AGCAGTAAGGTTTGTGATGA+AGG + tig0010471:33608-33627 None:intergenic 40.0%
CGGTTCCAAATTTAGCAGTA+AGG + tig0010471:33621-33640 None:intergenic 40.0%
ACCACAATAGTGTGATTGTG+TGG - tig0010471:33932-33951 Msa1348630:intron 40.0%
AGTTGGGTTTCCTTGAAATG+TGG + tig0010471:34010-34029 None:intergenic 40.0%
!! TTAACTCTGTTGGTCTTGAG+GGG - tig0010471:34047-34066 Msa1348630:intron 40.0%
GTGAGTTAGAAGTCTCACAT+TGG + tig0010471:34206-34225 None:intergenic 40.0%
CTCTGAACTGTACTTGTGAA+TGG + tig0010471:34292-34311 None:intergenic 40.0%
TGTTTGTGCAAGTCTTGCTT+AGG - tig0010471:34323-34342 Msa1348630:intron 40.0%
AACTTATCACAGGCTCTACA+AGG + tig0010471:34377-34396 None:intergenic 40.0%
ATTGGAATGTAGTATTGCCC+TGG - tig0010471:34532-34551 Msa1348630:intron 40.0%
! TTTTCCCAGCTGATTACGTA+TGG - tig0010471:34779-34798 Msa1348630:intron 40.0%
GTTCATTGTCAGCCCTAATT+TGG + tig0010471:34954-34973 None:intergenic 40.0%
CAACTCAAGTTCGACTCATT+TGG + tig0010471:35042-35061 None:intergenic 40.0%
GCACAAAAATAGTCCCACAT+CGG - tig0010471:35319-35338 Msa1348630:intron 40.0%
CGACTCGATAAGAATGTGTT+CGG + tig0010471:35668-35687 None:intergenic 40.0%
! CACATTATTTGAAGTAGGGC+TGG + tig0010471:35725-35744 None:intergenic 40.0%
GTGGCACATGGCTTAATAAT+CGG + tig0010471:35835-35854 None:intergenic 40.0%
GTTAATCAAATGGTGGCACA+TGG + tig0010471:35847-35866 None:intergenic 40.0%
TTCACTCAACTGATCCATCG+TGG - tig0010471:32423-32442 Msa1348630:three_prime_UTR 45.0%
TCACTCAACTGATCCATCGT+GGG - tig0010471:32424-32443 Msa1348630:three_prime_UTR 45.0%
GGAGGAGAGAAGAGGATTAA+TGG - tig0010471:32445-32464 Msa1348630:three_prime_UTR 45.0%
GAAGGGAGGGTGAGAATAAA+CGG + tig0010471:32485-32504 None:intergenic 45.0%
GGAACTGGAAATTGAAGGGA+GGG + tig0010471:32498-32517 None:intergenic 45.0%
TGGAACTGGAAATTGAAGGG+AGG + tig0010471:32499-32518 None:intergenic 45.0%
CACGATAAAGTGTGTGAAGG+TGG - tig0010471:32580-32599 Msa1348630:three_prime_UTR 45.0%
ACGGTAGATACGGTTGTTTG+GGG + tig0010471:32696-32715 None:intergenic 45.0%
GACGGTAGATACGGTTGTTT+GGG + tig0010471:32697-32716 None:intergenic 45.0%
ATGGACATCGACGGTAGATA+CGG + tig0010471:32706-32725 None:intergenic 45.0%
ACGCATGCATGTGATTGTGA+GGG + tig0010471:32966-32985 None:intergenic 45.0%
TACGCATGCATGTGATTGTG+AGG + tig0010471:32967-32986 None:intergenic 45.0%
!! AGAGAATGGTGGTGGAGTAA+GGG + tig0010471:33246-33265 None:intergenic 45.0%
!! AAGAGAATGGTGGTGGAGTA+AGG + tig0010471:33247-33266 None:intergenic 45.0%
CGATCAGTTTAGTACCGTCA+CGG + tig0010471:33482-33501 None:intergenic 45.0%
CTCGACAGTCCGATCAAAAT+CGG + tig0010471:33911-33930 None:intergenic 45.0%
GCCACACAATCACACTATTG+TGG + tig0010471:33936-33955 None:intergenic 45.0%
GAGACGGAGATCATCACATT+AGG - tig0010471:34069-34088 Msa1348630:intron 45.0%
! TGAGTATGGTTCGACTCGTT+TGG - tig0010471:35100-35119 Msa1348630:intron 45.0%
TTATCGAGTCGAGCTTAGAC+AGG - tig0010471:35677-35696 Msa1348630:intron 45.0%
GCACATGGCTTAATAATCGG+TGG + tig0010471:35832-35851 None:intergenic 45.0%
!! TATTATTATTTAAGAAAAAA+AGG - tig0010471:32994-33013 Msa1348630:intron 5.0%
! GCTACTACTGTGTCTGGAAC+TGG + tig0010471:32513-32532 None:intergenic 50.0%
TCCAGACACAGTAGTAGCCT+TGG - tig0010471:32515-32534 Msa1348630:three_prime_UTR 50.0%
ACCAAGGCTACTACTGTGTC+TGG + tig0010471:32519-32538 None:intergenic 50.0%
CGACGGTAGATACGGTTGTT+TGG + tig0010471:32698-32717 None:intergenic 50.0%
CTTTGCAGGATGGACATCGA+CGG + tig0010471:32715-32734 None:intergenic 50.0%
TAACGTACGGCTTTGCAGGA+TGG + tig0010471:32725-32744 None:intergenic 50.0%
GACGAGAGAATAGAGCCAAG+AGG - tig0010471:33169-33188 Msa1348630:intron 50.0%
GGCACCATACGTAATCAGCT+GGG + tig0010471:34786-34805 None:intergenic 50.0%
TGGCACCATACGTAATCAGC+TGG + tig0010471:34787-34806 None:intergenic 50.0%
CTCAACTGATCCATCGTGGG+AGG - tig0010471:32427-32446 Msa1348630:three_prime_UTR 55.0%
TCAGCAGTGGCATACCGTGA+CGG - tig0010471:33465-33484 Msa1348630:intron 55.0%
!! CTGTTGGTCTTGAGGGGAGA+CGG - tig0010471:34053-34072 Msa1348630:intron 55.0%
CCTCTTCTCTCCTCCCACGA+TGG + tig0010471:32440-32459 None:intergenic 60.0%
CCATCGTGGGAGGAGAGAAG+AGG - tig0010471:32437-32456 Msa1348630:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
tig0010471 gene 32394 36042 32394 ID=Msa1348630;Name=Msa1348630
tig0010471 mRNA 32394 36042 32394 ID=Msa1348630-mRNA-1;Parent=Msa1348630;Name=Msa1348630-mRNA-1;_AED=0.13;_eAED=0.13;_QI=70|1|1|1|0.5|0.33|3|293|117
tig0010471 exon 32394 32650 32394 ID=Msa1348630-mRNA-1:exon:6526;Parent=Msa1348630-mRNA-1
tig0010471 exon 35498 35614 35498 ID=Msa1348630-mRNA-1:exon:6525;Parent=Msa1348630-mRNA-1
tig0010471 exon 35700 36042 35700 ID=Msa1348630-mRNA-1:exon:6524;Parent=Msa1348630-mRNA-1
tig0010471 five_prime_UTR 35973 36042 35973 ID=Msa1348630-mRNA-1:five_prime_utr;Parent=Msa1348630-mRNA-1
tig0010471 CDS 35700 35972 35700 ID=Msa1348630-mRNA-1:cds;Parent=Msa1348630-mRNA-1
tig0010471 CDS 35534 35614 35534 ID=Msa1348630-mRNA-1:cds;Parent=Msa1348630-mRNA-1
tig0010471 three_prime_UTR 35498 35533 35498 ID=Msa1348630-mRNA-1:three_prime_utr;Parent=Msa1348630-mRNA-1
tig0010471 three_prime_UTR 32394 32650 32394 ID=Msa1348630-mRNA-1:three_prime_utr;Parent=Msa1348630-mRNA-1
Gene Sequence

>Msa1348630

ATGGCTGTTGCATTAACACCGTTTATTCTCACCCTCCCTTCAATTTCCAGTTCCAGACACAGTAGTAGCCTTGGTATTGTTCCTTATAGTAGTAGTAAGCAACACATTCGCAGCATCACGATAAAGTGTGTGAAGGTGGATACAGATACAAATATCATGTGTGAACCTTGCAATGGAAAAGGATGGTTGGTATGTGACTTTTGTGAAGGCCAAAAAACTAATGTCAAAGCCCCAAACAACCGTATCTACCGTCGATGTCCATCCTGCAAAGCCGTTGGATGTGTGTTGTGTTCAAACTGCAAGGTCTTCAAATGTGTCACTTTTCCTGATTTCAACGATTCTCCTATTAATTAA

Protein sequence

>Msa1348630

MAVALTPFILTLPSISSSRHSSSLGIVPYSSSKQHIRSITIKCVKVDTDTNIMCEPCNGKGWLVCDFCEGQKTNVKAPNNRIYRRCPSCKAVGCVLCSNCKVFKCVTFPDFNDSPIN*