AlfalfaGEDB | MS.gene66835

M. sativa cultivar XinJiangDaYe / MS.gene66835

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0008150 GO:0008152 GO:0009521 GO:0009523 GO:0009654 GO:0009987 GO:0015979 GO:0019898 GO:0032991 GO:0043167 GO:0043169 GO:0044237 GO:0046872 GO:0098796 GO:0110165 GO:1902494 GO:1990204
PFAM: PF01789.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66835.t1	XP_003603874.1	98.3	233	4	0	1	233	1	233	2.20E-127	464.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66835.t1	Q9S720	55.4	233	103	1	1	233	8	239	3.7e-67	256.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66835.t1	G7J6G6	98.3	233	4	0	1	233	1	233	1.6e-127	464.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene66835	0.873793	1.12E-67	-1.69E-46
MS.gene049171	MS.gene66835	0.838457	2.84E-57	-1.69E-46
MS.gene049217	MS.gene66835	0.83921	1.82E-57	-1.69E-46
MS.gene049222	MS.gene66835	0.856564	2.95E-62	-1.69E-46
MS.gene049285	MS.gene66835	0.844418	7.66E-59	-1.69E-46
MS.gene049320	MS.gene66835	0.830877	2.29E-55	-1.69E-46
MS.gene049351	MS.gene66835	0.824862	6.41E-54	-1.69E-46
MS.gene049356	MS.gene66835	0.831999	1.21E-55	-1.69E-46
MS.gene049369	MS.gene66835	0.8401	1.07E-57	-1.69E-46
MS.gene049396	MS.gene66835	0.840793	7.02E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66835.t1	MTR_3g116110	98.283	233	4	0	1	233	1	233	5.41e-175	481
MS.gene66835.t1	MTR_6g034285	96.970	66	2	0	153	218	130	195	1.53e-39	140

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66835.t1	AT1G76450	55.833	240	98	4	1	233	1	239	7.72e-90	265

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Find 55 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATCTATATTCAGCTAT+TGG	0.276276	3.4:+99045094	MS.gene66835:CDS
AAAGAGGAATCTAATTCCAA+TGG	0.583004	3.4:+99044474	MS.gene66835:CDS
AACAGACTGTATACAGTGAC+AGG	0.526154	3.4:+99045139	MS.gene66835:CDS
AACATCTATATTCAGCTATT+GGG	0.365323	3.4:+99045095	MS.gene66835:CDS
AACCGCAAGTCCTTCTTGTG+AGG	0.610452	3.4:-99044034	None:intergenic
AACTGCTTTCTACCCAAAAG+AGG	0.462382	3.4:+99044458	MS.gene66835:CDS
AAGGAATGGCATCCATTTCA+TGG	0.346543	3.4:+99043663	None:intergenic
AATATGACAGGTTAGTGGGT+TGG	0.579569	3.4:+99044747	MS.gene66835:intron
ACACTGCAAAGTCCTGGTGA+GGG	0.688636	3.4:+99045067	MS.gene66835:CDS
ACAGCATAGTTCATTGAAGT+AGG	0.523925	3.4:+99045458	MS.gene66835:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAGGAATCTAATTCCAA+TGG	+	chr3.4:99044474-99044493	MS.gene66835:CDS	30.0%
AAGATATTCATTCTGGCATT+TGG	+	chr3.4:99045425-99045444	MS.gene66835:intron	30.0%
ACATTGCAGTACATGTTATA+AGG	+	chr3.4:99044876-99044895	MS.gene66835:intron	30.0%
TATGAATATGACAGGTTAGT+GGG	+	chr3.4:99044743-99044762	MS.gene66835:intron	30.0%
TTATAAGGTTGCAACTGTAA+GGG	+	chr3.4:99044891-99044910	MS.gene66835:intron	30.0%
TTATGAATATGACAGGTTAG+TGG	+	chr3.4:99044742-99044761	MS.gene66835:intron	30.0%
TTCAAGATAGATATTCCACA+AGG	+	chr3.4:99044288-99044307	MS.gene66835:CDS	30.0%
TTCAATGTTTAAGCATGATG+AGG	-	chr3.4:99043925-99043944	None:intergenic	30.0%
TTCACTAAGATGGAATCATT+CGG	+	chr3.4:99044610-99044629	MS.gene66835:CDS	30.0%
GATTCCATCTTAGTGAAATC+TGG	-	chr3.4:99044607-99044626	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	99043668	99045479	99043668	ID=MS.gene66835
chr3.4	mRNA	99043668	99045479	99043668	ID=MS.gene66835.t1;Parent=MS.gene66835
chr3.4	exon	99043668	99043731	99043668	ID=MS.gene66835.t1.exon1;Parent=MS.gene66835.t1
chr3.4	CDS	99043668	99043731	99043668	ID=cds.MS.gene66835.t1;Parent=MS.gene66835.t1
chr3.4	exon	99043820	99043874	99043820	ID=MS.gene66835.t1.exon2;Parent=MS.gene66835.t1
chr3.4	CDS	99043820	99043874	99043820	ID=cds.MS.gene66835.t1;Parent=MS.gene66835.t1
chr3.4	exon	99044029	99044138	99044029	ID=MS.gene66835.t1.exon3;Parent=MS.gene66835.t1
chr3.4	CDS	99044029	99044138	99044029	ID=cds.MS.gene66835.t1;Parent=MS.gene66835.t1
chr3.4	exon	99044244	99044309	99044244	ID=MS.gene66835.t1.exon4;Parent=MS.gene66835.t1
chr3.4	CDS	99044244	99044309	99044244	ID=cds.MS.gene66835.t1;Parent=MS.gene66835.t1
chr3.4	exon	99044415	99044495	99044415	ID=MS.gene66835.t1.exon5;Parent=MS.gene66835.t1
chr3.4	CDS	99044415	99044495	99044415	ID=cds.MS.gene66835.t1;Parent=MS.gene66835.t1
chr3.4	exon	99044578	99044660	99044578	ID=MS.gene66835.t1.exon6;Parent=MS.gene66835.t1
chr3.4	CDS	99044578	99044660	99044578	ID=cds.MS.gene66835.t1;Parent=MS.gene66835.t1
chr3.4	exon	99044757	99044832	99044757	ID=MS.gene66835.t1.exon7;Parent=MS.gene66835.t1
chr3.4	CDS	99044757	99044832	99044757	ID=cds.MS.gene66835.t1;Parent=MS.gene66835.t1
chr3.4	exon	99045047	99045165	99045047	ID=MS.gene66835.t1.exon8;Parent=MS.gene66835.t1
chr3.4	CDS	99045047	99045165	99045047	ID=cds.MS.gene66835.t1;Parent=MS.gene66835.t1
chr3.4	exon	99045318	99045362	99045318	ID=MS.gene66835.t1.exon9;Parent=MS.gene66835.t1
chr3.4	CDS	99045318	99045362	99045318	ID=cds.MS.gene66835.t1;Parent=MS.gene66835.t1
chr3.4	exon	99045462	99045479	99045462	ID=MS.gene66835.t1.exon10;Parent=MS.gene66835.t1
chr3.4	CDS	99045462	99045479	99045462	ID=cds.MS.gene66835.t1;Parent=MS.gene66835.t1

Gene Sequence

>MS.gene66835

ATGGCATCCATTTCATGGTTCAGCTGTCTACACATCCGACCAACTGCCACTGCCGGCGACAAAGGTCCTTCACCACTCACCTTCCTCATTTGTATACTAAATTTGCATACTGTTCAATATTTCTAATGGATTTGCCTAAGTTTTTTGTTCAGGTTTATCATCTCCCATAACCGTGGAACATCATAAAACAAGACCACAAAATTTACTGTAAGAAAAGAGTAACGTTTACTTCTCAATTTCCATTATTTCTTGTGCCTCATCATGCTTAAACATTGAACTTAAACATCTATATTATTACTATTATTAATATAATAAAGAATATTATGCTTAATAATATTATGGACATATGTGTTTTTATCAGCTCATCCTCACAAGAAGGACTTGCGGTTAATAGAAGACAACTGATTCTTTACACATCCACCGCAGCAATTGCAGCTTCATCTACTGACTCAAATGCATTGGCACTCAATGGTGATTAATTTTTACTTTTTTTTTTAAAAAAACTTTGTATTGTTACTACTACATCGGAAATGGTAAGTATCATAGCTTGTTTTTTAATTTAAACGTGTGTCGCAGATGTGACTGAGGATTTCAGTATCTACACTGATGATGAGAACAAGTTCAAGATAGATATTCCACAAGGTGAATTTAATTGAAAGTTTGGAAGCAAAACTATATATACATTCAAATTCAATTCAATAGCTTAACTTGAATTATGTACTTTTTTGTTTTAATGATTTGGATCAGAGTGGCAAATTGGAACAGGAGAATCTGCAGGGTTCAAATCATTAACTGCTTTCTACCCAAAAGAGGAATCTAATTCCAATGGTATAATCAAACTCAAATAATTTGTTTCTTCATCAGTTACAAATTGCAATATAAACTAATTAATATTGATATGTTGCTGCAGTGAGCGTTGTGATCACAGGAGTGGGTCCAGATTTCACTAAGATGGAATCATTCGGCAAAGTTGAAGAATTTGCTGACACTCTGGTGTCATTTCTTGATCAGATTCATAACTATTATTTGCTGGTTTTTCTTGCTACCAGATTCATAACTATTTTGCTTAATATATTATGAATATGACAGGTTAGTGGGTTGGACAGAAGCTGGAAAAAACCACCTGGTGTGGCTGCTAAACTCATAGATTGTAAATCATCTAAAGGTGCATACTTTTACTCTTATATGTCATTGAAAGCTGCTGCATTACATTGCAGTACATGTTATAAGGTTGCAACTGTAAGGGAAAGAAAATATGTTATAGGTTACATATAGTTCTAATGTATTCTTAATGAGACAGAGAGAGACTTCTCAAAACTGAAATTATGGGTTGAATTTTGAAGTTCTAACTGCTAGTTTGCCTTGAAAAAACGGTTCAGGATTTTATTTCATTGAGTATACACTGCAAAGTCCTGGTGAGGGTCGCAAACATCTATATTCAGCTATTGGGATGTTAACAAATGGCTGGTATAACAGACTGTATACAGTGACAGGACAGGTACTATTCGATATACTGCAGTGTCTGTGTGTGTCAGGTTTCAATCTAGAGCTAAATGTTCGTTAGTCTAATGGCTATTGTCATTTCATATATCTACCAAAAAATAATGTTGCTTAGTAATGACTCTTATCTTGTTTCCTGCCTACATGCAGTATGGGGAAGAGGAAACAGACAAGTATGCTTCCAAAATTCAGAAGGTTAACTTCTTTTCATGGTTGACATATTAAAATATTTGACAGAACAAAGGTTCTGATACTCAAAGATATTCATTCTGGCATTTGGTTTATGCAATACAGCATAGTTCATTGAAGTAG

Protein sequence

>MS.gene66835.t1

MASISWFSCLHIRPTATAGDKGLSSPITVEHHKTRPQNLLSSSQEGLAVNRRQLILYTSTAAIAASSTDSNALALNDVTEDFSIYTDDENKFKIDIPQEWQIGTGESAGFKSLTAFYPKEESNSNVSVVITGVGPDFTKMESFGKVEEFADTLVSGLDRSWKKPPGVAAKLIDCKSSKGFYFIEYTLQSPGEGRKHLYSAIGMLTNGWYNRLYTVTGQYGEEETDKYASKIQKHSSLK