AlfalfaGEDB | MS.gene35081

M. sativa cultivar XinJiangDaYe / MS.gene35081

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35081.t1	KEH31297.1	86.4	440	53	4	10	447	1	435	4.50E-191	677.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35081.t1	Q9C9F0	46.1	308	123	9	81	385	104	371	1.1e-52	209.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35081.t1	A0A072UNM8	86.4	440	53	4	10	447	1	435	3.2e-191	677.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene35081.t1	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene35081	-0.891323	4.41E-74	-1.69E-46
MS.gene049173	MS.gene35081	-0.80569	1.18E-49	-1.69E-46
MS.gene04921	MS.gene35081	0.804775	1.84E-49	-1.69E-46
MS.gene049217	MS.gene35081	-0.843765	1.15E-58	-1.69E-46
MS.gene049222	MS.gene35081	-0.89336	6.76E-75	-1.69E-46
MS.gene049232	MS.gene35081	-0.867242	1.58E-65	-1.69E-46
MS.gene049281	MS.gene35081	0.803115	4.07E-49	-1.69E-46
MS.gene049285	MS.gene35081	-0.86896	4.43E-66	-1.69E-46
MS.gene049320	MS.gene35081	-0.867357	1.45E-65	-1.69E-46
MS.gene04939	MS.gene35081	-0.814794	1.29E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35081.t1	MTR_4g094412	92.886	492	28	4	1	490	1	487	0.0	860
MS.gene35081.t1	MTR_4g094412	92.754	483	28	4	10	490	1	478	0.0	843
MS.gene35081.t1	MTR_7g009730	34.661	502	233	17	42	482	21	488	2.01e-55	195
MS.gene35081.t1	MTR_4g107970	40.193	311	164	8	13	307	12	316	1.28e-51	185
MS.gene35081.t1	MTR_4g107970	43.028	251	110	7	78	307	1	239	1.30e-49	178
MS.gene35081.t1	MTR_2g088000	34.642	433	211	15	70	476	169	555	7.08e-49	177
MS.gene35081.t1	MTR_7g110720	42.063	252	101	5	228	479	171	377	1.01e-48	172
MS.gene35081.t1	MTR_2g023930	40.816	245	121	5	67	306	140	365	1.49e-48	176
MS.gene35081.t1	MTR_7g110720	42.063	252	101	5	228	479	198	404	1.98e-48	172
MS.gene35081.t1	MTR_3g053330	42.339	248	104	8	230	476	235	444	6.85e-48	172

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35081.t1	AT1G68150	45.119	379	147	11	10	372	27	360	4.81e-84	264
MS.gene35081.t1	AT5G15130	86.813	91	12	0	230	320	169	259	8.86e-53	186
MS.gene35081.t1	AT5G15130	86.813	91	12	0	230	320	211	301	1.14e-52	187
MS.gene35081.t1	AT4G04450	44.961	258	115	4	223	476	175	409	1.15e-51	181
MS.gene35081.t1	AT4G04450	44.961	258	115	4	223	476	269	503	5.43e-51	182
MS.gene35081.t1	AT1G62300	33.400	503	261	15	13	477	73	539	3.86e-50	180
MS.gene35081.t1	AT1G18860	41.379	290	124	6	230	476	223	509	4.18e-46	168
MS.gene35081.t1	AT4G01720	46.559	247	107	5	228	473	221	443	5.14e-45	164
MS.gene35081.t1	AT4G22070	35.962	317	168	6	18	306	48	357	1.84e-44	164
MS.gene35081.t1	AT4G22070	35.962	317	168	6	18	306	48	357	1.84e-44	164

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Find 85 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCAAAGGGTACATGA+GGG	0.661009	4.4:-20126262	MS.gene35081:CDS
AAACAAAGCATTGAGGAAAG+TGG	0.571381	4.4:-20126980	MS.gene35081:CDS
AAATGCAAAGGGTACATGAG+GGG	0.679805	4.4:-20126261	MS.gene35081:CDS
AACCCCAATGATCCATCCCA+AGG	0.633360	4.4:-20125476	MS.gene35081:CDS
AAGAAGAAAACAAAGCATTG+AGG	0.626884	4.4:-20126987	MS.gene35081:CDS
AAGTGCCTTAGAAATGGAGA+TGG	0.601274	4.4:-20127019	MS.gene35081:CDS
AATCCTAAAATTTCAGATTA+TGG	0.198583	4.4:-20125584	MS.gene35081:CDS
AATGCAGCCACAAGTGGTGA+AGG	0.567792	4.4:-20126499	MS.gene35081:CDS
AATTCCTTGGGATGGATCAT+TGG	0.353833	4.4:+20125472	None:intergenic
ACAGTTAAGTGCCTTAGAAA+TGG	0.429802	4.4:-20127025	MS.gene35081:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAGAAGAATCCAAAAAGA+TGG	-	chr4.4:20125126-20125145	MS.gene35081:CDS	30.0%
AGAAGGCAAAAAAGAACAAT+TGG	-	chr4.4:20126425-20126444	MS.gene35081:CDS	30.0%
AGTATAAGTGAGAGTGATTT+GGG	-	chr4.4:20126345-20126364	MS.gene35081:CDS	30.0%
AGTGCAGAATAAAATGCAAA+GGG	-	chr4.4:20126461-20126480	MS.gene35081:CDS	30.0%
ATCTCATGAAATGATCTTGA+TGG	+	chr4.4:20126261-20126280	None:intergenic	30.0%
CTCTTGAAAAATAGGTATCT+AGG	-	chr4.4:20125641-20125660	MS.gene35081:CDS	30.0%
GAAGGCAAAAAAGAACAATT+GGG	-	chr4.4:20126426-20126445	MS.gene35081:CDS	30.0%
GTAAGGATTAAAGGATTGTT+GGG	+	chr4.4:20127183-20127202	None:intergenic	30.0%
TAGTATAAGTGAGAGTGATT+TGG	-	chr4.4:20126344-20126363	MS.gene35081:CDS	30.0%
TATGGACAGAAAATAGCAAA+AGG	-	chr4.4:20126708-20126727	MS.gene35081:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	20125118	20127637	20125118	ID=MS.gene35081
chr4.4	mRNA	20125118	20127637	20125118	ID=MS.gene35081.t1;Parent=MS.gene35081
chr4.4	exon	20127428	20127637	20127428	ID=MS.gene35081.t1.exon1;Parent=MS.gene35081.t1
chr4.4	CDS	20127428	20127637	20127428	ID=cds.MS.gene35081.t1;Parent=MS.gene35081.t1
chr4.4	exon	20126903	20127043	20126903	ID=MS.gene35081.t1.exon2;Parent=MS.gene35081.t1
chr4.4	CDS	20126903	20127043	20126903	ID=cds.MS.gene35081.t1;Parent=MS.gene35081.t1
chr4.4	exon	20126174	20126554	20126174	ID=MS.gene35081.t1.exon3;Parent=MS.gene35081.t1
chr4.4	CDS	20126174	20126554	20126174	ID=cds.MS.gene35081.t1;Parent=MS.gene35081.t1
chr4.4	exon	20125961	20126074	20125961	ID=MS.gene35081.t1.exon4;Parent=MS.gene35081.t1
chr4.4	CDS	20125961	20126074	20125961	ID=cds.MS.gene35081.t1;Parent=MS.gene35081.t1
chr4.4	exon	20125118	20125744	20125118	ID=MS.gene35081.t1.exon5;Parent=MS.gene35081.t1
chr4.4	CDS	20125118	20125744	20125118	ID=cds.MS.gene35081.t1;Parent=MS.gene35081.t1

Gene Sequence

>MS.gene35081

ATGGGTAGAGAAGAAGAATCCAAAAAGATGGAAATTGATCTCTCTTTGAAGATAGATAGTGATGATGATCGAGAAGAAGAAGTAGATCATGAGCTTGTTAAAGAGGATGATGAGAAGGAAGAAGTACATGAAGCTACAGCTGGTGAAATAGAAGACGATGCTTCAGTTATACAACAACTATCTTTGCAAGATGACACGAAAATGAAACAGGTATATATATAATTTTTCATTGAAGACAAGTAGATCCAAAAGCATAATTACCAATATTGATTTCTTTTTTCTTTGAGAGACCAATATTGATATTATTGCTTATATATTCTAAAAAATTGAGTATTCTTTTAATGAGACAAATTTTCACTAATTATTTGTAACTTTTCTAGTACCCCTTATATTCTTCAGCTATAATTAATATTTTTTTCTTTGTTTGTTCAAAGAAAACATTATTTGTATTATTTTCTTGAACAATTGATCATATTTTCTATAGTGTATTACTTGCTTATGTATATATGCATGTAATGTATAACTCTTGAAAAATAGGTATCTAGGTAGTTTTAATTGTCAGTGAAAAATGATATATATGTATATGATCTACAGTTAAGTGCCTTAGAAATGGAGATGGAAAGTATGAAAGAAGAAAACAAAGCATTGAGGAAAGTGGTAGAACAAACAATGAAAGACTACTCTGATCTGCAAACAAAATTTTCAGTCATCCAAGAAAATAATAATAAGAGAAAGGTAAATTAAATCTGAATGTTAATTAATTTTCTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATGTAGTCTTTATTGACTATCTATATATCATCAGAGTGATGATATTTTGACATCCATTTGATGACAACTTTGTTGACAACCTTGTTTTTCTCACTTCTTATTGGTCAAAAACAATAGAGAGAGAAAAAGAAAGAGAAATGATAACAACATCATGTGAATATGAGAGAGAAAGTTGTCAAAAAGTGGTTGTCAAAATATCATTTATCATATCATCCCTGTTGTGTTTAATATAATAATAATTGATAGAGATCTCACTTAGCAGGATCGTCAACTTTCTCTCTCACTGCAAGACAATAATGCAGCCACAAGTGGTGAAGGACCATCAAGATCATTTCATGAGATCTTTAGTCAAAAAATTCAAAGATCTTCATCTCCATTACCACCAAACAATATTACTGATGATGATAGTATAAGTGAGAGTGATTTGGGTTTGTCATTGAGGATGCAGACAATAAACACGTGTCAGAGAGATACTGAGGGAAATAAAGAAGGCAAAAAAGAACAATTGGGAAGTTTTGAATCAGTGCAGAATAAAATGCAAAGGGTACATGAGGGGCCTAGTGTTACTACTACTCATGCTGCTTATTCCCCTCCTAATAGAAAGGCTAGGGTTTCTGTTAGAGCAAGATGTGAAACTGCCACAGTGAGTTCAAAGTTCTTTTTTAAGATTTGTTTACTATATGATTTGATTAAGATTTTTTTATTTAAGATGAAACTAATTATTCTCATGGTTTTTTGAAAGATGAATGATGGATGCCAATGGAGAAAATATGGACAGAAAATAGCAAAAGGAAATCCATGTCCTCGTGCCTACTATCGTTGTACTGTTGCTCCAGGCTGTCCAGTTAGGAAACAAGTATATATTTATTCATTCTCAACTATTATTAATTTTATTTGGATCTTCTGCGGTGGCGCGGCTGCACCTTGTATTGGTTGCAAAGTAGTTGGACCAGGATGCAAATCTTGCATCCTAACCTAACAACTATGCAGTCACTCAGCAGAAGATCTGATTTCTTTATCAATTAACCGGATCTTAAGAATTAGTATATTTTTTAATTTTTGTTTAATATAGGTGCAAAGATGTATAGATGACATGTCTATACTAATTACAACATATGAAGGAACACATAACCATCCACTACCTGTTGGTGCAACTGCAATGGCTTCAACAGCTTCAGCAGCGGCTTCATTTATGTTACTGGATTCAAGCAATCCTAAAATTTCAGATTATGGTTTCACAACCCAACAATCCTTTAATCCTTACACTAATAATAGCTTTCACCACCCATTAAACCAATCTTCAAATATTAGAAGCATAAACCCCAATGATCCATCCCAAGGAATTGTTTTTGACCTCACCAATAATAATAATGAACTCAACGAACCGCGACGATTTTCCACTGCAGGTAGCTCCAGCTCCAATAATTCAACTGATCAACCTCGTTTTTCTTGGATGCAAAACAAATACCAACAGCAGAGTAGTACTAGCAATGCTAATATTGCAATGAACAATTTTCATAACCCTAGAGTACCACTGGATATTCATGATAGGGCTTGGAAAGGATCAGAAGAAAATAATAACAACAATGTGTCTGCAATTGCATCAGATCCTAAGTTTAGGCTTGCTGTTGCAGCTGCAATTTCATCACTCATGAATGAAGAAAGCAACAACACTACTACACATGGTAGCAACAATTGA

Protein sequence

>MS.gene35081.t1

MGREEESKKMEIDLSLKIDSDDDREEEVDHELVKEDDEKEEVHEATAGEIEDDASVIQQLSLQDDTKMKQLSALEMEMESMKEENKALRKVVEQTMKDYSDLQTKFSVIQENNNKRKDRQLSLSLQDNNAATSGEGPSRSFHEIFSQKIQRSSSPLPPNNITDDDSISESDLGLSLRMQTINTCQRDTEGNKEGKKEQLGSFESVQNKMQRVHEGPSVTTTHAAYSPPNRKARVSVRARCETATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSSNPKISDYGFTTQQSFNPYTNNSFHHPLNQSSNIRSINPNDPSQGIVFDLTNNNNELNEPRRFSTAGSSSSNNSTDQPRFSWMQNKYQQQSSTSNANIAMNNFHNPRVPLDIHDRAWKGSEENNNNNVSAIASDPKFRLAVAAAISSLMNEESNNTTTHGSNN