Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0068760 | XP_013467519.1 | 96.552 | 116 | 4 | 0 | 1 | 116 | 1 | 116 | 3.87e-70 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0068760 | A0A072VIW8 | 96.552 | 116 | 4 | 0 | 1 | 116 | 1 | 116 | 1.85e-70 | 215 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004060 | Msa0068760 | 0.812264 | 4.626578e-51 | -8.615850e-47 |
| Msa0006880 | Msa0068760 | 0.801386 | 9.228599e-49 | -8.615850e-47 |
| Msa0008090 | Msa0068760 | 0.800249 | 1.574839e-48 | -8.615850e-47 |
| Msa0008410 | Msa0068760 | 0.818453 | 1.944943e-52 | -8.615850e-47 |
| Msa0027580 | Msa0068760 | 0.801563 | 8.486979e-49 | -8.615850e-47 |
| Msa0032260 | Msa0068760 | 0.807835 | 4.161884e-50 | -8.615850e-47 |
| Msa0055150 | Msa0068760 | 0.827276 | 1.711199e-54 | -8.615850e-47 |
| Msa0057140 | Msa0068760 | 0.809169 | 2.161344e-50 | -8.615850e-47 |
| Msa0057710 | Msa0068760 | 0.800518 | 1.388223e-48 | -8.615850e-47 |
| Msa0068760 | Msa0076000 | 0.803465 | 3.440754e-49 | -8.615850e-47 |
| Msa0068760 | Msa0081230 | 0.814850 | 1.248775e-51 | -8.615850e-47 |
| Msa0068760 | Msa0090030 | 0.800048 | 1.730512e-48 | -8.615850e-47 |
| Msa0068760 | Msa0094920 | 0.805801 | 1.120307e-49 | -8.615850e-47 |
| Msa0068760 | Msa0094950 | 0.808204 | 3.474615e-50 | -8.615850e-47 |
| Msa0068760 | Msa0099510 | 0.803571 | 3.271818e-49 | -8.615850e-47 |
| Msa0068760 | Msa0100800 | 0.806026 | 1.004493e-49 | -8.615850e-47 |
| Msa0068760 | Msa0112560 | 0.801938 | 7.110863e-49 | -8.615850e-47 |
| Msa0068760 | Msa0121820 | 0.822520 | 2.267042e-53 | -8.615850e-47 |
| Msa0068760 | Msa0127310 | 0.819387 | 1.193025e-52 | -8.615850e-47 |
| Msa0068760 | Msa0131450 | 0.815932 | 7.174936e-52 | -8.615850e-47 |
| Msa0068760 | Msa0137040 | 0.808555 | 2.924121e-50 | -8.615850e-47 |
| Msa0068760 | Msa0166750 | 0.821300 | 4.344190e-53 | -8.615850e-47 |
| Msa0068760 | Msa0167480 | 0.804581 | 2.016401e-49 | -8.615850e-47 |
| Msa0068760 | Msa0182280 | 0.800544 | 1.371238e-48 | -8.615850e-47 |
| Msa0068760 | Msa0183460 | 0.806195 | 9.255401e-50 | -8.615850e-47 |
| Msa0068760 | Msa0186890 | 0.815896 | 7.308202e-52 | -8.615850e-47 |
| Msa0068760 | Msa0194480 | 0.807118 | 5.908107e-50 | -8.615850e-47 |
| Msa0068760 | Msa0199690 | 0.825088 | 5.670989e-54 | -8.615850e-47 |
| Msa0068760 | Msa0208810 | 0.801539 | 8.584203e-49 | -8.615850e-47 |
| Msa0068760 | Msa0227400 | 0.807792 | 4.250669e-50 | -8.615850e-47 |
| Msa0068760 | Msa0231880 | 0.821476 | 3.956524e-53 | -8.615850e-47 |
| Msa0068760 | Msa0236270 | 0.813812 | 2.117999e-51 | -8.615850e-47 |
| Msa0068760 | Msa0239450 | 0.800755 | 1.241691e-48 | -8.615850e-47 |
| Msa0068760 | Msa0242230 | 0.803096 | 4.103010e-49 | -8.615850e-47 |
| Msa0068760 | Msa0260210 | 0.801719 | 7.885745e-49 | -8.615850e-47 |
| Msa0068760 | Msa0260240 | 0.805451 | 1.326693e-49 | -8.615850e-47 |
| Msa0068760 | Msa0260280 | 0.806059 | 9.885508e-50 | -8.615850e-47 |
| Msa0068760 | Msa0280430 | 0.843126 | 1.697497e-58 | -8.615850e-47 |
| Msa0068760 | Msa0291520 | 0.823165 | 1.604523e-53 | -8.615850e-47 |
| Msa0068760 | Msa0304290 | 0.809842 | 1.549056e-50 | -8.615850e-47 |
| Msa0068760 | Msa0304330 | 0.813522 | 2.452793e-51 | -8.615850e-47 |
| Msa0068760 | Msa0304590 | 0.809226 | 2.100582e-50 | -8.615850e-47 |
| Msa0068760 | Msa0304660 | 0.817099 | 3.930447e-52 | -8.615850e-47 |
| Msa0068760 | Msa0331700 | 0.818123 | 2.309503e-52 | -8.615850e-47 |
| Msa0068760 | Msa0337510 | 0.801613 | 8.288197e-49 | -8.615850e-47 |
| Msa0068760 | Msa0347680 | 0.808952 | 2.404613e-50 | -8.615850e-47 |
| Msa0068760 | Msa0355270 | 0.810371 | 1.191867e-50 | -8.615850e-47 |
| Msa0068760 | Msa0376690 | 0.805858 | 1.089754e-49 | -8.615850e-47 |
| Msa0068760 | Msa0392940 | 0.820541 | 6.494246e-53 | -8.615850e-47 |
| Msa0068760 | Msa0393950 | 0.807188 | 5.709932e-50 | -8.615850e-47 |
| Msa0068760 | Msa0394400 | 0.821137 | 4.737896e-53 | -8.615850e-47 |
| Msa0068760 | Msa0402330 | 0.809206 | 2.121754e-50 | -8.615850e-47 |
| Msa0068760 | Msa0431770 | 0.802483 | 5.491132e-49 | -8.615850e-47 |
| Msa0068760 | Msa0460930 | 0.813328 | 2.706371e-51 | -8.615850e-47 |
| Msa0068760 | Msa0463500 | 0.805144 | 1.538266e-49 | -8.615850e-47 |
| Msa0068760 | Msa0465550 | 0.803187 | 3.929236e-49 | -8.615850e-47 |
| Msa0068760 | Msa0469910 | -0.804961 | 1.680376e-49 | -8.615850e-47 |
| Msa0068760 | Msa0471590 | 0.818610 | 1.792028e-52 | -8.615850e-47 |
| Msa0068760 | Msa0505150 | 0.812805 | 3.523949e-51 | -8.615850e-47 |
| Msa0068760 | Msa0508590 | 0.814792 | 1.286151e-51 | -8.615850e-47 |
| Msa0068760 | Msa0508870 | 0.802863 | 4.584194e-49 | -8.615850e-47 |
| Msa0068760 | Msa0513440 | 0.801863 | 7.366334e-49 | -8.615850e-47 |
| Msa0068760 | Msa0525340 | 0.803376 | 3.590275e-49 | -8.615850e-47 |
| Msa0068760 | Msa0526890 | 0.802196 | 6.291001e-49 | -8.615850e-47 |
| Msa0068760 | Msa0534900 | 0.807863 | 4.105452e-50 | -8.615850e-47 |
| Msa0068760 | Msa0541860 | 0.817250 | 3.634687e-52 | -8.615850e-47 |
| Msa0068760 | Msa0542160 | 0.827650 | 1.391740e-54 | -8.615850e-47 |
| Msa0068760 | Msa0545060 | 0.801512 | 8.693829e-49 | -8.615850e-47 |
| Msa0068760 | Msa0546360 | 0.816795 | 4.599667e-52 | -8.615850e-47 |
| Msa0068760 | Msa0552810 | 0.803977 | 2.693690e-49 | -8.615850e-47 |
| Msa0068760 | Msa0556790 | 0.804847 | 1.774312e-49 | -8.615850e-47 |
| Msa0068760 | Msa0560470 | 0.806039 | 9.983302e-50 | -8.615850e-47 |
| Msa0068760 | Msa0581070 | 0.816845 | 4.482995e-52 | -8.615850e-47 |
| Msa0068760 | Msa0591060 | 0.802486 | 5.482555e-49 | -8.615850e-47 |
| Msa0068760 | Msa0591770 | 0.813383 | 2.631822e-51 | -8.615850e-47 |
| Msa0068760 | Msa0600600 | 0.814810 | 1.274651e-51 | -8.615850e-47 |
| Msa0068760 | Msa0610390 | 0.807418 | 5.104312e-50 | -8.615850e-47 |
| Msa0068760 | Msa0639120 | 0.809884 | 1.517224e-50 | -8.615850e-47 |
| Msa0068760 | Msa0641140 | 0.807722 | 4.399632e-50 | -8.615850e-47 |
| Msa0068760 | Msa0650920 | 0.806206 | 9.205671e-50 | -8.615850e-47 |
| Msa0068760 | Msa0663900 | 0.822110 | 2.822184e-53 | -8.615850e-47 |
| Msa0068760 | Msa0664960 | 0.810505 | 1.115066e-50 | -8.615850e-47 |
| Msa0068760 | Msa0669850 | 0.811967 | 5.370139e-51 | -8.615850e-47 |
| Msa0068760 | Msa0680240 | 0.802316 | 5.943145e-49 | -8.615850e-47 |
| Msa0068760 | Msa0687630 | 0.811389 | 7.173771e-51 | -8.615850e-47 |
| Msa0068760 | Msa0692940 | 0.802365 | 5.806937e-49 | -8.615850e-47 |
| Msa0068760 | Msa0694840 | 0.802099 | 6.589250e-49 | -8.615850e-47 |
| Msa0068760 | Msa0703230 | 0.817817 | 2.708072e-52 | -8.615850e-47 |
| Msa0068760 | Msa0705600 | 0.800451 | 1.432338e-48 | -8.615850e-47 |
| Msa0068760 | Msa0707390 | 0.812247 | 4.666614e-51 | -8.615850e-47 |
| Msa0068760 | Msa0711490 | 0.833596 | 4.871103e-56 | -8.615850e-47 |
| Msa0068760 | Msa0722020 | 0.805712 | 1.169202e-49 | -8.615850e-47 |
| Msa0068760 | Msa0726830 | 0.803585 | 3.249147e-49 | -8.615850e-47 |
| Msa0068760 | Msa0733480 | 0.803770 | 2.974982e-49 | -8.615850e-47 |
| Msa0068760 | Msa0735310 | 0.819383 | 1.195508e-52 | -8.615850e-47 |
| Msa0068760 | Msa0743260 | 0.805759 | 1.142934e-49 | -8.615850e-47 |
| Msa0068760 | Msa0750920 | 0.807885 | 4.062715e-50 | -8.615850e-47 |
| Msa0068760 | Msa0755340 | 0.801220 | 9.979427e-49 | -8.615850e-47 |
| Msa0068760 | Msa0784380 | 0.812152 | 4.894393e-51 | -8.615850e-47 |
| Msa0068760 | Msa0791820 | 0.801401 | 9.162297e-49 | -8.615850e-47 |
| Msa0068760 | Msa0793390 | 0.802760 | 4.814813e-49 | -8.615850e-47 |
| Msa0068760 | Msa0805500 | 0.825553 | 4.401612e-54 | -8.615850e-47 |
| Msa0068760 | Msa0806920 | 0.826196 | 3.097576e-54 | -8.615850e-47 |
| Msa0068760 | Msa0814250 | 0.817071 | 3.988729e-52 | -8.615850e-47 |
| Msa0068760 | Msa0814320 | 0.808293 | 3.326321e-50 | -8.615850e-47 |
| Msa0068760 | Msa0824640 | 0.801949 | 7.074400e-49 | -8.615850e-47 |
| Msa0068760 | Msa0850960 | 0.806861 | 6.696152e-50 | -8.615850e-47 |
| Msa0068760 | Msa0888940 | 0.818528 | 1.870346e-52 | -8.615850e-47 |
| Msa0068760 | Msa0900630 | 0.811469 | 6.892304e-51 | -8.615850e-47 |
| Msa0068760 | Msa0926460 | 0.801804 | 7.576341e-49 | -8.615850e-47 |
| Msa0068760 | Msa0966720 | -0.805599 | 1.235197e-49 | -8.615850e-47 |
| Msa0068760 | Msa0967370 | 0.801995 | 6.920150e-49 | -8.615850e-47 |
| Msa0068760 | Msa0974810 | 0.811333 | 7.378595e-51 | -8.615850e-47 |
| Msa0068760 | Msa1025940 | 0.805298 | 1.427901e-49 | -8.615850e-47 |
| Msa0068760 | Msa1073400 | 0.813176 | 2.922064e-51 | -8.615850e-47 |
| Msa0068760 | Msa1083210 | 0.804956 | 1.683976e-49 | -8.615850e-47 |
| Msa0068760 | Msa1084470 | 0.804707 | 1.898244e-49 | -8.615850e-47 |
| Msa0068760 | Msa1089840 | 0.834553 | 2.805014e-56 | -8.615850e-47 |
| Msa0068760 | Msa1113880 | 0.801777 | 7.673316e-49 | -8.615850e-47 |
| Msa0068760 | Msa1126120 | -0.803160 | 3.980688e-49 | -8.615850e-47 |
| Msa0068760 | Msa1127830 | 0.837952 | 3.836836e-57 | -8.615850e-47 |
| Msa0068760 | Msa1160360 | 0.804789 | 1.824878e-49 | -8.615850e-47 |
| Msa0068760 | Msa1166010 | 0.809623 | 1.726505e-50 | -8.615850e-47 |
| Msa0068760 | Msa1166870 | 0.810124 | 1.347146e-50 | -8.615850e-47 |
| Msa0068760 | Msa1171870 | 0.800360 | 1.495097e-48 | -8.615850e-47 |
| Msa0068760 | Msa1184370 | 0.821087 | 4.864419e-53 | -8.615850e-47 |
| Msa0068760 | Msa1187840 | 0.805675 | 1.190432e-49 | -8.615850e-47 |
| Msa0068760 | Msa1201830 | 0.827995 | 1.149827e-54 | -8.615850e-47 |
| Msa0068760 | Msa1227690 | 0.822383 | 2.439644e-53 | -8.615850e-47 |
| Msa0068760 | Msa1253810 | 0.821102 | 4.827067e-53 | -8.615850e-47 |
| Msa0068760 | Msa1269300 | 0.834290 | 3.264194e-56 | -8.615850e-47 |
| Msa0068760 | Msa1294840 | 0.825335 | 4.957831e-54 | -8.615850e-47 |
| Msa0068760 | Msa1310690 | 0.808292 | 3.326705e-50 | -8.615850e-47 |
| Msa0068760 | Msa1316830 | 0.822489 | 2.305396e-53 | -8.615850e-47 |
| Msa0068760 | Msa1341070 | 0.808065 | 3.719149e-50 | -8.615850e-47 |
| Msa0068760 | Msa1359390 | 0.800735 | 1.253682e-48 | -8.615850e-47 |
| Msa0068760 | Msa1365150 | 0.825638 | 4.203030e-54 | -8.615850e-47 |
| Msa0068760 | Msa1365860 | 0.810580 | 1.073931e-50 | -8.615850e-47 |
| Msa0068760 | Msa1367880 | 0.819359 | 1.210518e-52 | -8.615850e-47 |
| Msa0068760 | Msa1368210 | 0.813403 | 2.605529e-51 | -8.615850e-47 |
| Msa0068760 | Msa1397940 | 0.825631 | 4.219851e-54 | -8.615850e-47 |
| Msa0068760 | Msa1404190 | 0.812025 | 5.217633e-51 | -8.615850e-47 |
| Msa0068760 | Msa1416390 | 0.818224 | 2.191174e-52 | -8.615850e-47 |
| Msa0068760 | Msa1438640 | 0.803345 | 3.643834e-49 | -8.615850e-47 |
| Msa0068760 | Msa1442850 | 0.806496 | 7.996592e-50 | -8.615850e-47 |
| Msa0068760 | Msa1461490 | 0.807802 | 4.231158e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0068760 | MtrunA17_Chr1g0172941 | 96.552 | 116 | 4 | 0 | 1 | 116 | 1 | 116 | 3.56e-74 | 215 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0068760 | AT3G57320.1 | 50.000 | 96 | 47 | 1 | 8 | 102 | 5 | 100 | 2.92e-22 | 84.3 |
Find 21 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAAATATGTTTGGCCTTGC+TGG | 0.219767 | 1_2:+35987329 | Msa0068760:three_prime_UTR |
| TTAAACTTCTGATCTTAAAT+AGG | 0.221480 | 1_2:+35987244 | Msa0068760:exon |
| TCTTCGATAGAAAGGCTTTA+AGG | 0.224574 | 1_2:-35983622 | None:intergenic |
| AATTATGTTAAATTAAATAT+AGG | 0.336041 | 1_2:+35983470 | None:intergenic |
| TTCTTCATACGAAATATGTT+TGG | 0.392117 | 1_2:+35987320 | Msa0068760:three_prime_UTR |
| TGTGCTAGTGCAGATTAGTT+TGG | 0.418765 | 1_2:-35983493 | None:intergenic |
| ATCGCAGAAGATGAATTATA+CGG | 0.472527 | 1_2:-35986457 | None:intergenic |
| TCAGAAGCTCTTCGATAGAA+AGG | 0.485513 | 1_2:-35983630 | None:intergenic |
| GGTCAAAGCACAGGAACAGC+TGG | 0.502758 | 1_2:+35987199 | Msa0068760:intron |
| GTCTGTTAAAATAAACGAGT+TGG | 0.507951 | 1_2:+35983593 | Msa0068760:CDS |
| GAGGAATTTGTATCGAAGAA+TGG | 0.537737 | 1_2:+35983566 | Msa0068760:exon |
| TTGACCACAGGTCAAAGCAC+AGG | 0.579489 | 1_2:+35987190 | Msa0068760:intron |
| AAACAGAGAGAAGGAAGCAG+AGG | 0.589194 | 1_2:+35983547 | Msa0068760:five_prime_UTR |
| CTTTGTCAGATACTGAGAGT+GGG | 0.589362 | 1_2:+35986240 | Msa0068760:intron |
| GAATTTGTATCGAAGAATGG+TGG | 0.607570 | 1_2:+35983569 | Msa0068760:exon |
| GAGTGGGGAACAATTGAAAG+TGG | 0.620724 | 1_2:+35986256 | Msa0068760:CDS |
| TCGAAGAGCTTCTGAAGCCG+AGG | 0.622741 | 1_2:+35983638 | Msa0068760:CDS |
| ACTTTGTCAGATACTGAGAG+TGG | 0.633351 | 1_2:+35986239 | Msa0068760:intron |
| TTTGTCAGATACTGAGAGTG+GGG | 0.654397 | 1_2:+35986241 | Msa0068760:intron |
| CCATATTGCTAAAACCAGCA+AGG | 0.666565 | 1_2:-35987343 | None:intergenic |
| TGCAATTTAAGTAATTTACG+AGG | 0.674297 | 1_2:-35987384 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGAATTATTTAAATTTTTC+GGG | + | chr1_2:35984699-35984718 | Msa0068760:intron | 10.0% |
| !!! | TTGAATTATTTAAATTTTTC+GGG | + | chr1_2:35984699-35984718 | Msa0068760:intron | 10.0% |
| !!! | TTTTTATTTTATTTGACTAT+TGG | + | chr1_2:35985449-35985468 | Msa0068760:intron | 10.0% |
| !! | TAGAAGAAATTATAAAATTA+AGG | + | chr1_2:35986784-35986803 | Msa0068760:intron | 10.0% |
| !!! | GTATTTTTTATTTTTTTTCT+TGG | + | chr1_2:35987280-35987299 | Msa0068760:three_prime_UTR | 10.0% |
| !! | TTTGTATGGTTTAATTATTA+GGG | - | chr1_2:35983729-35983748 | None:intergenic | 15.0% |
| !! | TTTAAAAAATCAACGATTAT+AGG | - | chr1_2:35984923-35984942 | None:intergenic | 15.0% |
| !!! | ATCGTTGATTTTTTAAATTT+TGG | + | chr1_2:35984926-35984945 | Msa0068760:intron | 15.0% |
| !!! | TCGTTGATTTTTTAAATTTT+GGG | + | chr1_2:35984927-35984946 | Msa0068760:intron | 15.0% |
| !!! | ATACATTTAAATTTTTGCAA+CGG | + | chr1_2:35986363-35986382 | Msa0068760:intron | 15.0% |
| !! | AAAATCAAATAATTGGTAAA+AGG | - | chr1_2:35986396-35986415 | None:intergenic | 15.0% |
| !! | ACAATTCATTTATCTAATTT+GGG | - | chr1_2:35986685-35986704 | None:intergenic | 15.0% |
| !! | AACAATTCATTTATCTAATT+TGG | - | chr1_2:35986686-35986705 | None:intergenic | 15.0% |
| !!! | ATTAGATAAATGAATTGTTT+TGG | + | chr1_2:35986687-35986706 | Msa0068760:intron | 15.0% |
| !!! | TTAGATAAATGAATTGTTTT+GGG | + | chr1_2:35986688-35986707 | Msa0068760:intron | 15.0% |
| !!! | TAAAATTAACTTTATTTGCA+GGG | - | chr1_2:35986866-35986885 | None:intergenic | 15.0% |
| !!! | ATAAAATTAACTTTATTTGC+AGG | - | chr1_2:35986867-35986886 | None:intergenic | 15.0% |
| !! | ATTATTAGGGTATATATGAA+GGG | - | chr1_2:35983716-35983735 | None:intergenic | 20.0% |
| !! | AATTATTAGGGTATATATGA+AGG | - | chr1_2:35983717-35983736 | None:intergenic | 20.0% |
| !! | GTTTGTATGGTTTAATTATT+AGG | - | chr1_2:35983730-35983749 | None:intergenic | 20.0% |
| !! | AGAGATATATAGATAAATTG+AGG | + | chr1_2:35983961-35983980 | Msa0068760:intron | 20.0% |
| !!! | AAAAAAATGCTTTTGATTGA+TGG | + | chr1_2:35984346-35984365 | Msa0068760:intron | 20.0% |
| !! | TAGTGTACATTAAAAATAGA+TGG | - | chr1_2:35984416-35984435 | None:intergenic | 20.0% |
| !!! | TATTTGGTATGTAATTCTTT+TGG | + | chr1_2:35984465-35984484 | Msa0068760:intron | 20.0% |
| !!! | TTTTCAACGGTTAATTTTAA+TGG | - | chr1_2:35984647-35984666 | None:intergenic | 20.0% |
| !!! | AATTATTTAAATTTTTCGGG+TGG | + | chr1_2:35984702-35984721 | Msa0068760:intron | 20.0% |
| !!! | ATTATTTAAATTTTTCGGGT+GGG | + | chr1_2:35984703-35984722 | Msa0068760:intron | 20.0% |
| !!! | GCTTTTATACAATTTTATGT+CGG | - | chr1_2:35984774-35984793 | None:intergenic | 20.0% |
| !!! | AATTATTTAAATTTTTCGGG+TGG | + | chr1_2:35984702-35984721 | Msa0068760:intron | 20.0% |
| !!! | ATTATTTAAATTTTTCGGGT+GGG | + | chr1_2:35984703-35984722 | Msa0068760:intron | 20.0% |
| !!! | GATTTTATACAATTTTGTGT+CGG | - | chr1_2:35984888-35984907 | None:intergenic | 20.0% |
| !!! | CGTTGATTTTTTAAATTTTG+GGG | + | chr1_2:35984928-35984947 | Msa0068760:intron | 20.0% |
| !!! | GTTGATTTTTTAAATTTTGG+GGG | + | chr1_2:35984929-35984948 | Msa0068760:intron | 20.0% |
| !! | GTTTAAACTCTTGTATATAA+AGG | + | chr1_2:35985789-35985808 | Msa0068760:intron | 20.0% |
| !!! | TTCTTACCACTTAATATTTT+AGG | + | chr1_2:35986081-35986100 | Msa0068760:intron | 20.0% |
| !!! | TACATTTAAATTTTTGCAAC+GGG | + | chr1_2:35986364-35986383 | Msa0068760:intron | 20.0% |
| !!! | TTACCAATTATTTGATTTTC+AGG | + | chr1_2:35986397-35986416 | Msa0068760:intron | 20.0% |
| !!! | TAGATATTTTGAGAATTGAA+AGG | - | chr1_2:35986533-35986552 | None:intergenic | 20.0% |
| !!! | TTGTACCACATTTTTAAAAA+AGG | + | chr1_2:35986888-35986907 | Msa0068760:intron | 20.0% |
| !!! | GAATACCTTTTTTAAAAATG+TGG | - | chr1_2:35986896-35986915 | None:intergenic | 20.0% |
| !!! | CTAACTTTTAAATCTTACAT+GGG | - | chr1_2:35986987-35987006 | None:intergenic | 20.0% |
| !! | TTAAACTTCTGATCTTAAAT+AGG | + | chr1_2:35987244-35987263 | Msa0068760:exon | 20.0% |
| !!! | GTTATTTTGATGCTATGAAA+TGG | - | chr1_2:35983865-35983884 | None:intergenic | 25.0% |
| ! | TTTCAAATTATTATCCGTGT+CGG | - | chr1_2:35984047-35984066 | None:intergenic | 25.0% |
| ! | ACATAATTCAGTGTAATCAT+AGG | + | chr1_2:35984073-35984092 | Msa0068760:intron | 25.0% |
| ! | AAAACTTGAGTTTGATTACT+AGG | + | chr1_2:35984247-35984266 | Msa0068760:intron | 25.0% |
| ! | AATCAAGTTTGAGTATTATC+AGG | + | chr1_2:35984437-35984456 | Msa0068760:intron | 25.0% |
| ! | GTATTATCAGGTATGATATT+TGG | + | chr1_2:35984449-35984468 | Msa0068760:intron | 25.0% |
| !!! | GGCTTTAAACAATTTTTCAA+CGG | - | chr1_2:35984660-35984679 | None:intergenic | 25.0% |
| !!! | TACAATTTTATGTCGGTTTT+AGG | - | chr1_2:35984767-35984786 | None:intergenic | 25.0% |
| !!! | ATTTTTTAAATTTTGGGGGT+GGG | + | chr1_2:35984933-35984952 | Msa0068760:intron | 25.0% |
| !!! | TGTATTCATTTTAGTATGTG+TGG | - | chr1_2:35985483-35985502 | None:intergenic | 25.0% |
| ! | ACTAAAATGAATACACAAAC+CGG | + | chr1_2:35985488-35985507 | Msa0068760:intron | 25.0% |
| ! | TTGTAAAGAAATTTGCAAGT+TGG | - | chr1_2:35985589-35985608 | None:intergenic | 25.0% |
| ! | TTGGATAGTATCAAAGAAAA+TGG | - | chr1_2:35985629-35985648 | None:intergenic | 25.0% |
| ! | AACAGTTCAAAATTCCTTTA+GGG | + | chr1_2:35985851-35985870 | Msa0068760:intron | 25.0% |
| ! | CTGAGTTAATTTCAGAAAAA+CGG | + | chr1_2:35986315-35986334 | Msa0068760:CDS | 25.0% |
| !!! | TGTTGCTTTAATTCCAAAAT+CGG | + | chr1_2:35986746-35986765 | Msa0068760:intron | 25.0% |
| !!! | AAAAAAGGTATTCGTAAACA+AGG | + | chr1_2:35986903-35986922 | Msa0068760:intron | 25.0% |
| ! | TTATCAGACAGAAACTAATA+TGG | + | chr1_2:35986940-35986959 | Msa0068760:intron | 25.0% |
| !! | GCTAACTTTTAAATCTTACA+TGG | - | chr1_2:35986988-35987007 | None:intergenic | 25.0% |
| !!! | AACTTATTGTGCCATTTTTT+GGG | + | chr1_2:35987099-35987118 | Msa0068760:intron | 25.0% |
| ! | TTCTTCATACGAAATATGTT+TGG | + | chr1_2:35987320-35987339 | Msa0068760:three_prime_UTR | 25.0% |
| ! | TGCAATTTAAGTAATTTACG+AGG | - | chr1_2:35987387-35987406 | None:intergenic | 25.0% |
| GTCTGTTAAAATAAACGAGT+TGG | + | chr1_2:35983593-35983612 | Msa0068760:CDS | 30.0% | |
| AAAAGAATGAATAGTGACCT+CGG | - | chr1_2:35983658-35983677 | None:intergenic | 30.0% | |
| TCGTATCACATCTATCAAAT+CGG | - | chr1_2:35983925-35983944 | None:intergenic | 30.0% | |
| TCAATGAGTGTATGAAAAAG+TGG | + | chr1_2:35983987-35984006 | Msa0068760:intron | 30.0% | |
| CAATGAGTGTATGAAAAAGT+GGG | + | chr1_2:35983988-35984007 | Msa0068760:intron | 30.0% | |
| ! | AAGTTTTACTGTCCTATTGA+TGG | - | chr1_2:35984234-35984253 | None:intergenic | 30.0% |
| AATAGATGGAATGTTGAAGT+AGG | - | chr1_2:35984402-35984421 | None:intergenic | 30.0% | |
| ! | AATTATAGGTCTATTTTGCG+AGG | - | chr1_2:35984681-35984700 | None:intergenic | 30.0% |
| !!! | TTTATGTCGGTTTTAGGTTT+TGG | - | chr1_2:35984761-35984780 | None:intergenic | 30.0% |
| !!! | TACAATTTTGTGTCGGTTTT+AGG | - | chr1_2:35984881-35984900 | None:intergenic | 30.0% |
| !!! | GATTTTTTAAATTTTGGGGG+TGG | + | chr1_2:35984932-35984951 | Msa0068760:intron | 30.0% |
| CAAAGGAAATAGAATGTGTA+GGG | - | chr1_2:35984998-35985017 | None:intergenic | 30.0% | |
| !! | AACCTTTGGAATAAAAGGTT+TGG | + | chr1_2:35985087-35985106 | Msa0068760:intron | 30.0% |
| !! | ACCTTTGGAATAAAAGGTTT+GGG | + | chr1_2:35985088-35985107 | Msa0068760:intron | 30.0% |
| TTCTGCTTCAAAGGAAAAAT+GGG | - | chr1_2:35985277-35985296 | None:intergenic | 30.0% | |
| ATTCTGCTTCAAAGGAAAAA+TGG | - | chr1_2:35985278-35985297 | None:intergenic | 30.0% | |
| ACTCATGAAAACTTGAGTTT+GGG | - | chr1_2:35985418-35985437 | None:intergenic | 30.0% | |
| CTAAAATGAATACACAAACC+GGG | + | chr1_2:35985489-35985508 | Msa0068760:intron | 30.0% | |
| TAAAATGAATACACAAACCG+GGG | + | chr1_2:35985490-35985509 | Msa0068760:intron | 30.0% | |
| !! | GAAATTTGCAAGTTGGTTAA+AGG | - | chr1_2:35985582-35985601 | None:intergenic | 30.0% |
| TTCTTTGATACTATCCAAAC+TGG | + | chr1_2:35985631-35985650 | Msa0068760:intron | 30.0% | |
| TCTTTGATACTATCCAAACT+GGG | + | chr1_2:35985632-35985651 | Msa0068760:intron | 30.0% | |
| !! | CACTATTCAAGTTTGTTATG+CGG | + | chr1_2:35985717-35985736 | Msa0068760:intron | 30.0% |
| ! | TTTTGTACTCCATGAAATGA+AGG | - | chr1_2:35985821-35985840 | None:intergenic | 30.0% |
| CAACAGTTCAAAATTCCTTT+AGG | + | chr1_2:35985850-35985869 | Msa0068760:intron | 30.0% | |
| ! | AGTGAAGTAACTCAGTTTTT+GGG | - | chr1_2:35985965-35985984 | None:intergenic | 30.0% |
| ! | TAGTGAAGTAACTCAGTTTT+TGG | - | chr1_2:35985966-35985985 | None:intergenic | 30.0% |
| AAAACTGAGTTACTTCACTA+TGG | + | chr1_2:35985966-35985985 | Msa0068760:intron | 30.0% | |
| TTGTAGAAGTGAGTTACTAA+AGG | + | chr1_2:35986045-35986064 | Msa0068760:intron | 30.0% | |
| AGCGTTCCTAAAATATTAAG+TGG | - | chr1_2:35986090-35986109 | None:intergenic | 30.0% | |
| !!! | CCTACCTTTTTTACTATTGA+TGG | - | chr1_2:35986131-35986150 | None:intergenic | 30.0% |
| CCATCAATAGTAAAAAAGGT+AGG | + | chr1_2:35986128-35986147 | Msa0068760:intron | 30.0% | |
| !! | CAGTCTTTTCAATTTGAAGT+TGG | + | chr1_2:35986176-35986195 | Msa0068760:intron | 30.0% |
| ! | AAGTTGGTTCTTGATACTAT+GGG | + | chr1_2:35986192-35986211 | Msa0068760:intron | 30.0% |
| TCAAGAACCAACTTCAATTT+AGG | - | chr1_2:35986218-35986237 | None:intergenic | 30.0% | |
| GTTAATTTCAGAAAAACGGA+AGG | + | chr1_2:35986319-35986338 | Msa0068760:CDS | 30.0% | |
| GAGCCTGAAAATCAAATAAT+TGG | - | chr1_2:35986403-35986422 | None:intergenic | 30.0% | |
| !! | ATTATTTGATTTTCAGGCTC+AGG | + | chr1_2:35986403-35986422 | Msa0068760:intron | 30.0% |
| ATCGCAGAAGATGAATTATA+CGG | - | chr1_2:35986460-35986479 | None:intergenic | 30.0% | |
| TTAGAGCAAGTTAGTATTTC+TGG | + | chr1_2:35986503-35986522 | Msa0068760:intron | 30.0% | |
| ! | TCTGAAAAGTCTCTGAAAAA+TGG | + | chr1_2:35986610-35986629 | Msa0068760:intron | 30.0% |
| ! | TTTGTTGTCGTAGAGTAATT+CGG | + | chr1_2:35986642-35986661 | Msa0068760:intron | 30.0% |
| !!! | AATTGTTTTGGGTACACTTT+TGG | + | chr1_2:35986699-35986718 | Msa0068760:intron | 30.0% |
| GACATGTAGTAAATTTAGAC+AGG | + | chr1_2:35986806-35986825 | Msa0068760:intron | 30.0% | |
| AGGAATCATGTAATAGTGAA+CGG | + | chr1_2:35986826-35986845 | Msa0068760:intron | 30.0% | |
| TTAAATCTTACATGGGAAAC+TGG | - | chr1_2:35986980-35986999 | None:intergenic | 30.0% | |
| TAGCCAATAGAATGTAAGTT+AGG | + | chr1_2:35987004-35987023 | Msa0068760:intron | 30.0% | |
| AAGCCTAACTTACATTCTAT+TGG | - | chr1_2:35987010-35987029 | None:intergenic | 30.0% | |
| AAATCTGGTAAACAGATACA+GGG | - | chr1_2:35987033-35987052 | None:intergenic | 30.0% | |
| AAAATCTGGTAAACAGATAC+AGG | - | chr1_2:35987034-35987053 | None:intergenic | 30.0% | |
| AATTCATCGAAGCTAAAATC+TGG | - | chr1_2:35987048-35987067 | None:intergenic | 30.0% | |
| !!! | GAACTTATTGTGCCATTTTT+TGG | + | chr1_2:35987098-35987117 | Msa0068760:intron | 30.0% |
| !!! | ACTTATTGTGCCATTTTTTG+GGG | + | chr1_2:35987100-35987119 | Msa0068760:intron | 30.0% |
| AAATTGTGTTCCCCAAAAAA+TGG | - | chr1_2:35987113-35987132 | None:intergenic | 30.0% | |
| TTATTTCATTTCTTGACCAC+AGG | + | chr1_2:35987178-35987197 | Msa0068760:intron | 30.0% | |
| !!! | TGTTTTTGAGTCTTTCACGA+TGG | - | chr1_2:35983532-35983551 | None:intergenic | 35.0% |
| AAGACTCAAAAACAGAGAGA+AGG | + | chr1_2:35983538-35983557 | Msa0068760:five_prime_UTR | 35.0% | |
| GAGGAATTTGTATCGAAGAA+TGG | + | chr1_2:35983566-35983585 | Msa0068760:exon | 35.0% | |
| GAATTTGTATCGAAGAATGG+TGG | + | chr1_2:35983569-35983588 | Msa0068760:exon | 35.0% | |
| TCTTCGATAGAAAGGCTTTA+AGG | - | chr1_2:35983625-35983644 | None:intergenic | 35.0% | |
| GGTATATATGAAGGGCAAAA+TGG | - | chr1_2:35983708-35983727 | None:intergenic | 35.0% | |
| GAAGAAATGAAGGGTTTGTA+TGG | - | chr1_2:35983743-35983762 | None:intergenic | 35.0% | |
| ! | TTTTATGGACTCACTGTTGT+TGG | + | chr1_2:35983817-35983836 | Msa0068760:intron | 35.0% |
| CGTATCACATCTATCAAATC+GGG | - | chr1_2:35983924-35983943 | None:intergenic | 35.0% | |
| ! | TGATACGATGATGATGTGAT+AGG | + | chr1_2:35983937-35983956 | Msa0068760:intron | 35.0% |
| ATCATGTTCCACATAACAGT+TGG | + | chr1_2:35984187-35984206 | Msa0068760:intron | 35.0% | |
| ! | TTTGAGTTCCAACTGTTATG+TGG | - | chr1_2:35984198-35984217 | None:intergenic | 35.0% |
| GAATAATGAGCTCCATCAAT+AGG | + | chr1_2:35984219-35984238 | Msa0068760:intron | 35.0% | |
| ACTTGAGTTTGATTACTAGG+TGG | + | chr1_2:35984250-35984269 | Msa0068760:intron | 35.0% | |
| CTTGAGTTTGATTACTAGGT+GGG | + | chr1_2:35984251-35984270 | Msa0068760:intron | 35.0% | |
| TGATAATCCGAAGTTCATTC+CGG | - | chr1_2:35984305-35984324 | None:intergenic | 35.0% | |
| GAATGAACTTCGGATTATCA+TGG | + | chr1_2:35984305-35984324 | Msa0068760:intron | 35.0% | |
| ATGTTGAAGTAGGAGGAAAA+GGG | - | chr1_2:35984392-35984411 | None:intergenic | 35.0% | |
| AATGTTGAAGTAGGAGGAAA+AGG | - | chr1_2:35984393-35984412 | None:intergenic | 35.0% | |
| AGTTCAGTTTCACATAAGCT+AGG | - | chr1_2:35984508-35984527 | None:intergenic | 35.0% | |
| AAAAAATTGTCCCTACACAG+TGG | + | chr1_2:35984593-35984612 | Msa0068760:intron | 35.0% | |
| GGAGCTAGAAAAAAAAGCTA+GGG | + | chr1_2:35984617-35984636 | Msa0068760:intron | 35.0% | |
| !!! | TTTGTGTCGGTTTTAGGTTT+CGG | - | chr1_2:35984875-35984894 | None:intergenic | 35.0% |
| GCAAAGGAAATAGAATGTGT+AGG | - | chr1_2:35984999-35985018 | None:intergenic | 35.0% | |
| ATTTCCTTTGCTTGTCTATG+TGG | + | chr1_2:35985008-35985027 | Msa0068760:intron | 35.0% | |
| CTTGTCTATGTGGATGATTA+CGG | + | chr1_2:35985018-35985037 | Msa0068760:intron | 35.0% | |
| TTGTCTATGTGGATGATTAC+GGG | + | chr1_2:35985019-35985038 | Msa0068760:intron | 35.0% | |
| AACAGCTTCCATCTCATTAA+GGG | - | chr1_2:35985050-35985069 | None:intergenic | 35.0% | |
| TAACAGCTTCCATCTCATTA+AGG | - | chr1_2:35985051-35985070 | None:intergenic | 35.0% | |
| AGATTTCTTCACTCAACCTT+TGG | + | chr1_2:35985073-35985092 | Msa0068760:intron | 35.0% | |
| !! | CACTCAACCTTTGGAATAAA+AGG | + | chr1_2:35985082-35985101 | Msa0068760:intron | 35.0% |
| ! | ACCCAAACCTTTTATTCCAA+AGG | - | chr1_2:35985092-35985111 | None:intergenic | 35.0% |
| ! | TTTGGAATAAAAGGTTTGGG+TGG | + | chr1_2:35985091-35985110 | Msa0068760:intron | 35.0% |
| ! | CTATGATCTTCACTGTTTCT+TGG | + | chr1_2:35985226-35985245 | Msa0068760:intron | 35.0% |
| TCTGCTTCAAAGGAAAAATG+GGG | - | chr1_2:35985276-35985295 | None:intergenic | 35.0% | |
| ATTGCGATATTCTGCTTCAA+AGG | - | chr1_2:35985286-35985305 | None:intergenic | 35.0% | |
| ! | CAATACAAGAGTGCAGTAAA+GGG | - | chr1_2:35985368-35985387 | None:intergenic | 35.0% |
| CTCATGAAAACTTGAGTTTG+GGG | - | chr1_2:35985417-35985436 | None:intergenic | 35.0% | |
| CACTCATGAAAACTTGAGTT+TGG | - | chr1_2:35985419-35985438 | None:intergenic | 35.0% | |
| AGTATCAAAGAAAATGGTGC+TGG | - | chr1_2:35985623-35985642 | None:intergenic | 35.0% | |
| CAAAAGGAAACAAGTTCACA+TGG | - | chr1_2:35985941-35985960 | None:intergenic | 35.0% | |
| ! | GTGAAGTAACTCAGTTTTTG+GGG | - | chr1_2:35985964-35985983 | None:intergenic | 35.0% |
| GCTGCCATCAATAGTAAAAA+AGG | + | chr1_2:35986124-35986143 | Msa0068760:CDS | 35.0% | |
| ! | AGTAAAAAAGGTAGGTACTG+AGG | + | chr1_2:35986136-35986155 | Msa0068760:intron | 35.0% |
| ! | GAAGTTGGTTCTTGATACTA+TGG | + | chr1_2:35986191-35986210 | Msa0068760:intron | 35.0% |
| TAAGTATGCGTTATCAGAGT+AGG | + | chr1_2:35986581-35986600 | Msa0068760:intron | 35.0% | |
| !!! | AACAGATAGAATGCCGATTT+TGG | - | chr1_2:35986762-35986781 | None:intergenic | 35.0% |
| GTTATGTGAAATGTGACACA+TGG | + | chr1_2:35987144-35987163 | Msa0068760:intron | 35.0% | |
| ! | TGTGCTAGTGCAGATTAGTT+TGG | - | chr1_2:35983496-35983515 | None:intergenic | 40.0% |
| TCAGAAGCTCTTCGATAGAA+AGG | - | chr1_2:35983633-35983652 | None:intergenic | 40.0% | |
| GAAGGGCAAAATGGTTGAAT+CGG | - | chr1_2:35983699-35983718 | None:intergenic | 40.0% | |
| CCACGATTGGAAGAAATGAA+GGG | - | chr1_2:35983752-35983771 | None:intergenic | 40.0% | |
| ACCACGATTGGAAGAAATGA+AGG | - | chr1_2:35983753-35983772 | None:intergenic | 40.0% | |
| TTTCTTCCAATCGTGGTTAG+TGG | + | chr1_2:35983756-35983775 | Msa0068760:intron | 40.0% | |
| TAGTAACCACTAACCACGAT+TGG | - | chr1_2:35983765-35983784 | None:intergenic | 40.0% | |
| CCATAAAAGCAGCAGAAAAG+TGG | - | chr1_2:35983805-35983824 | None:intergenic | 40.0% | |
| !!! | CCACTTTTCTGCTGCTTTTA+TGG | + | chr1_2:35983802-35983821 | Msa0068760:intron | 40.0% |
| TGTAATCATAGGCGTCATGT+CGG | + | chr1_2:35984084-35984103 | Msa0068760:intron | 40.0% | |
| TGTCAGACTTTAACTACCTC+CGG | + | chr1_2:35984283-35984302 | Msa0068760:intron | 40.0% | |
| ! | AGGAGGAAAAGGGGTTATTT+TGG | - | chr1_2:35984382-35984401 | None:intergenic | 40.0% |
| TGTTGAAGTAGGAGGAAAAG+GGG | - | chr1_2:35984391-35984410 | None:intergenic | 40.0% | |
| AGATGGAATGTTGAAGTAGG+AGG | - | chr1_2:35984399-35984418 | None:intergenic | 40.0% | |
| ! | TCACATAAGCTAGGTTGGAT+TGG | - | chr1_2:35984499-35984518 | None:intergenic | 40.0% |
| CAGTTTCACATAAGCTAGGT+TGG | - | chr1_2:35984504-35984523 | None:intergenic | 40.0% | |
| CGGAGCTAGAAAAAAAAGCT+AGG | + | chr1_2:35984616-35984635 | Msa0068760:intron | 40.0% | |
| GCTAGAAAAAAAAGCTAGGG+TGG | + | chr1_2:35984620-35984639 | Msa0068760:intron | 40.0% | |
| TACATCACTTTGCGGGAATT+TGG | + | chr1_2:35984730-35984749 | Msa0068760:intron | 40.0% | |
| TACATCACTTTGCGGGAATT+TGG | + | chr1_2:35984730-35984749 | Msa0068760:intron | 40.0% | |
| AATAGAATGTGTAGGGACAG+TGG | - | chr1_2:35984991-35985010 | None:intergenic | 40.0% | |
| TCATCCACATAGACAAGCAA+AGG | - | chr1_2:35985015-35985034 | None:intergenic | 40.0% | |
| TGTCTATGTGGATGATTACG+GGG | + | chr1_2:35985020-35985039 | Msa0068760:intron | 40.0% | |
| ACAAGAAAAGACTCCGAGAA+GGG | - | chr1_2:35985150-35985169 | None:intergenic | 40.0% | |
| ! | GGAGTCTTTTCTTGTCCAAT+AGG | + | chr1_2:35985155-35985174 | Msa0068760:intron | 40.0% |
| CTGACAGATGTTTGAGTGTT+GGG | - | chr1_2:35985190-35985209 | None:intergenic | 40.0% | |
| ACTGACAGATGTTTGAGTGT+TGG | - | chr1_2:35985191-35985210 | None:intergenic | 40.0% | |
| TTGGAGTTTACAAGTGGTAG+AGG | - | chr1_2:35985313-35985332 | None:intergenic | 40.0% | |
| CTACCACTTGTAAACTCCAA+TGG | + | chr1_2:35985313-35985332 | Msa0068760:intron | 40.0% | |
| GATCCATTGGAGTTTACAAG+TGG | - | chr1_2:35985319-35985338 | None:intergenic | 40.0% | |
| TTGCAATGTAGGTGATCCAT+TGG | - | chr1_2:35985332-35985351 | None:intergenic | 40.0% | |
| AATGGATCACCTACATTGCA+AGG | + | chr1_2:35985331-35985350 | Msa0068760:intron | 40.0% | |
| ! | GCAATACAAGAGTGCAGTAA+AGG | - | chr1_2:35985369-35985388 | None:intergenic | 40.0% |
| TTATTTGACTATTGGCCCAG+TGG | + | chr1_2:35985457-35985476 | Msa0068760:intron | 40.0% | |
| ! | TTTTAGTATGTGTGGCCACT+GGG | - | chr1_2:35985475-35985494 | None:intergenic | 40.0% |
| !! | ATTTTAGTATGTGTGGCCAC+TGG | - | chr1_2:35985476-35985495 | None:intergenic | 40.0% |
| TATGTCTAACACACCCAGTT+TGG | - | chr1_2:35985648-35985667 | None:intergenic | 40.0% | |
| GACATACACTTTCCAACTTG+AGG | + | chr1_2:35985662-35985681 | Msa0068760:intron | 40.0% | |
| ATACACTTTCCAACTTGAGG+AGG | + | chr1_2:35985665-35985684 | Msa0068760:intron | 40.0% | |
| TACACTTTCCAACTTGAGGA+GGG | + | chr1_2:35985666-35985685 | Msa0068760:intron | 40.0% | |
| AAACCATTATCCAACTCCAG+CGG | - | chr1_2:35985773-35985792 | None:intergenic | 40.0% | |
| AGGCTTATGCCTTCATTTCA+TGG | + | chr1_2:35985809-35985828 | Msa0068760:intron | 40.0% | |
| ! | CAAAATTCCTTTAGGGAGTG+TGG | + | chr1_2:35985858-35985877 | Msa0068760:intron | 40.0% |
| !!! | AACTCAGTTTTTGGGGCAAA+AGG | - | chr1_2:35985957-35985976 | None:intergenic | 40.0% |
| CTATGGGCCTAAATTGAAGT+TGG | + | chr1_2:35986208-35986227 | Msa0068760:intron | 40.0% | |
| ACTTTGTCAGATACTGAGAG+TGG | + | chr1_2:35986239-35986258 | Msa0068760:intron | 40.0% | |
| CTTTGTCAGATACTGAGAGT+GGG | + | chr1_2:35986240-35986259 | Msa0068760:intron | 40.0% | |
| TTTGTCAGATACTGAGAGTG+GGG | + | chr1_2:35986241-35986260 | Msa0068760:intron | 40.0% | |
| GCTTCGATGAATTGTTATCC+AGG | + | chr1_2:35987055-35987074 | Msa0068760:intron | 40.0% | |
| CGATGAATTGTTATCCAGGA+TGG | + | chr1_2:35987059-35987078 | Msa0068760:intron | 40.0% | |
| ! | GCATTTTCACAAAACCATCC+TGG | - | chr1_2:35987076-35987095 | None:intergenic | 40.0% |
| CCATATTGCTAAAACCAGCA+AGG | - | chr1_2:35987346-35987365 | None:intergenic | 40.0% | |
| !!! | CCTTGCTGGTTTTAGCAATA+TGG | + | chr1_2:35987343-35987362 | Msa0068760:three_prime_UTR | 40.0% |
| AAACAGAGAGAAGGAAGCAG+AGG | + | chr1_2:35983547-35983566 | Msa0068760:five_prime_UTR | 45.0% | |
| CCCTTCATTTCTTCCAATCG+TGG | + | chr1_2:35983749-35983768 | Msa0068760:intron | 45.0% | |
| TCCGTGTTAGTGTCTAGATG+GGG | - | chr1_2:35984014-35984033 | None:intergenic | 45.0% | |
| GTCCGTGTTAGTGTCTAGAT+GGG | - | chr1_2:35984015-35984034 | None:intergenic | 45.0% | |
| TGTCCGTGTTAGTGTCTAGA+TGG | - | chr1_2:35984016-35984035 | None:intergenic | 45.0% | |
| AATGTCCGTGCGTCATATAG+TGG | + | chr1_2:35984151-35984170 | Msa0068760:intron | 45.0% | |
| ATGTCCGTGCGTCATATAGT+GGG | + | chr1_2:35984152-35984171 | Msa0068760:intron | 45.0% | |
| ACTACCTCCGGAATGAACTT+CGG | + | chr1_2:35984295-35984314 | Msa0068760:intron | 45.0% | |
| TAATCCGAAGTTCATTCCGG+AGG | - | chr1_2:35984302-35984321 | None:intergenic | 45.0% | |
| AACTTTCTGTGACTCGCTCT+AGG | + | chr1_2:35984524-35984543 | Msa0068760:intron | 45.0% | |
| !! | TGACTCGCTCTAGGTTTTAG+TGG | + | chr1_2:35984533-35984552 | Msa0068760:intron | 45.0% |
| AAATTGTCCCTACACAGTGG+CGG | + | chr1_2:35984596-35984615 | Msa0068760:intron | 45.0% | |
| ATTCCCGCAAAGTGATGTAG+TGG | - | chr1_2:35984729-35984748 | None:intergenic | 45.0% | |
| ATTCCCGCAAAGTGATGTAG+TGG | - | chr1_2:35984729-35984748 | None:intergenic | 45.0% | |
| GTCTATGTGGATGATTACGG+GGG | + | chr1_2:35985021-35985040 | Msa0068760:intron | 45.0% | |
| ACATAAAAGCTGCCCCTTCT+CGG | + | chr1_2:35985134-35985153 | Msa0068760:intron | 45.0% | |
| CAAGAAAAGACTCCGAGAAG+GGG | - | chr1_2:35985149-35985168 | None:intergenic | 45.0% | |
| GACAAGAAAAGACTCCGAGA+AGG | - | chr1_2:35985151-35985170 | None:intergenic | 45.0% | |
| !! | AGATGTTTGAGTGTTGGGAC+AGG | - | chr1_2:35985185-35985204 | None:intergenic | 45.0% |
| ! | ATCTTCACTGTTTCTTGGCG+TGG | + | chr1_2:35985231-35985250 | Msa0068760:intron | 45.0% |
| CAGCAAGTTCCTTGCAATGT+AGG | - | chr1_2:35985343-35985362 | None:intergenic | 45.0% | |
| AATGAATACACAAACCGGGG+AGG | + | chr1_2:35985493-35985512 | Msa0068760:intron | 45.0% | |
| ATGAATACACAAACCGGGGA+GGG | + | chr1_2:35985494-35985513 | Msa0068760:intron | 45.0% | |
| ACACTTTCCAACTTGAGGAG+GGG | + | chr1_2:35985667-35985686 | Msa0068760:intron | 45.0% | |
| TGTGTGTGTATGTGTGCGTT+AGG | + | chr1_2:35985692-35985711 | Msa0068760:intron | 45.0% | |
| ATCAATGCCACACTCCCTAA+AGG | - | chr1_2:35985868-35985887 | None:intergenic | 45.0% | |
| GAGTGGGGAACAATTGAAAG+TGG | + | chr1_2:35986256-35986275 | Msa0068760:CDS | 45.0% | |
| TATGCGTTATCAGAGTAGGC+AGG | + | chr1_2:35986585-35986604 | Msa0068760:intron | 45.0% | |
| !! | CGAAATATGTTTGGCCTTGC+TGG | + | chr1_2:35987329-35987348 | Msa0068760:three_prime_UTR | 45.0% |
| !! | AATTTAAATAATTCAATTAT+AGG | - | chr1_2:35984695-35984714 | None:intergenic | 5.0% |
| !!! | ATTGAATTATTTAAATTTTT+CGG | + | chr1_2:35984698-35984717 | Msa0068760:intron | 5.0% |
| !! | AATTTAAATAATTCAATTAT+AGG | - | chr1_2:35984695-35984714 | None:intergenic | 5.0% |
| !!! | ATTGAATTATTTAAATTTTT+CGG | + | chr1_2:35984698-35984717 | Msa0068760:intron | 5.0% |
| GCCCCATCTAGACACTAACA+CGG | + | chr1_2:35984010-35984029 | Msa0068760:intron | 50.0% | |
| GCACGGACATTCCTCAGATT+AGG | - | chr1_2:35984142-35984161 | None:intergenic | 50.0% | |
| TGTCCGTGCGTCATATAGTG+GGG | + | chr1_2:35984153-35984172 | Msa0068760:intron | 50.0% | |
| TGGGCCACTACATCACTTTG+CGG | + | chr1_2:35984722-35984741 | Msa0068760:intron | 50.0% | |
| TGGGCCACTACATCACTTTG+CGG | + | chr1_2:35984722-35984741 | Msa0068760:intron | 50.0% | |
| AGAATGTGTAGGGACAGTGG+CGG | - | chr1_2:35984988-35985007 | None:intergenic | 50.0% | |
| GTTGGGACAGGAAGACCTAT+TGG | - | chr1_2:35985173-35985192 | None:intergenic | 50.0% | |
| GGGCAATGTGACAAGCTGAA+TGG | - | chr1_2:35985397-35985416 | None:intergenic | 50.0% | |
| TGAATACACAAACCGGGGAG+GGG | + | chr1_2:35985495-35985514 | Msa0068760:intron | 50.0% | |
| TTGACCACAGGTCAAAGCAC+AGG | + | chr1_2:35987190-35987209 | Msa0068760:intron | 50.0% | |
| TGTTCCTGTGCTTTGACCTG+TGG | - | chr1_2:35987197-35987216 | None:intergenic | 50.0% | |
| !! | TCGAAGAGCTTCTGAAGCCG+AGG | + | chr1_2:35983638-35983657 | Msa0068760:CDS | 55.0% |
| CGGACACTGATATGCCGACA+CGG | + | chr1_2:35984030-35984049 | Msa0068760:intron | 55.0% | |
| TCCTCAGATTAGGCGCGTCT+CGG | - | chr1_2:35984132-35984151 | None:intergenic | 55.0% | |
| GTCCGTGCGTCATATAGTGG+GGG | + | chr1_2:35984154-35984173 | Msa0068760:intron | 55.0% | |
| CACCCCCACTATATGACGCA+CGG | - | chr1_2:35984159-35984178 | None:intergenic | 55.0% | |
| ! | TCTAGCTCCGCCACTGTGTA+GGG | - | chr1_2:35984606-35984625 | None:intergenic | 55.0% |
| !! | TTCTAGCTCCGCCACTGTGT+AGG | - | chr1_2:35984607-35984626 | None:intergenic | 55.0% |
| GGGCCACTACATCACTTTGC+GGG | + | chr1_2:35984723-35984742 | Msa0068760:intron | 55.0% | |
| GGGCCACTACATCACTTTGC+GGG | + | chr1_2:35984723-35984742 | Msa0068760:intron | 55.0% | |
| !! | TAAATTTTGGGGGTGGGCCG+TGG | + | chr1_2:35984939-35984958 | Msa0068760:intron | 55.0% |
| GGGGGACTCCCTTAATGAGA+TGG | + | chr1_2:35985039-35985058 | Msa0068760:intron | 55.0% | |
| GAATACACAAACCGGGGAGG+GGG | + | chr1_2:35985496-35985515 | Msa0068760:intron | 55.0% | |
| AGGGGGATATGTGGTGACTC+AGG | + | chr1_2:35985513-35985532 | Msa0068760:intron | 55.0% | |
| ACACACACCCCTCCTCAAGT+TGG | - | chr1_2:35985677-35985696 | None:intergenic | 55.0% | |
| TTATGAGCTGTTGCGACCGC+TGG | + | chr1_2:35985754-35985773 | Msa0068760:intron | 55.0% | |
| CGACCGCTGGAGTTGGATAA+TGG | + | chr1_2:35985767-35985786 | Msa0068760:intron | 55.0% | |
| GGTCAAAGCACAGGAACAGC+TGG | + | chr1_2:35987199-35987218 | Msa0068760:intron | 55.0% | |
| ! | GATTAGGCGCGTCTCGGTGT+CGG | - | chr1_2:35984126-35984145 | None:intergenic | 60.0% |
| ACCGAGACGCGCCTAATCTG+AGG | + | chr1_2:35984128-35984147 | Msa0068760:intron | 60.0% | |
| ! | AGCCCTTCATGGGCTGAGGT+GGG | - | chr1_2:35984965-35984984 | None:intergenic | 60.0% |
| ! | ACAGTGGCGGAGCCCTTCAT+GGG | - | chr1_2:35984975-35984994 | None:intergenic | 60.0% |
| AAACCGGGGAGGGGGATATG+TGG | + | chr1_2:35985504-35985523 | Msa0068760:intron | 60.0% | |
| TCACCACATATCCCCCTCCC+CGG | - | chr1_2:35985510-35985529 | None:intergenic | 60.0% | |
| ! | TCATGGGCTGAGGTGGGCCA+CGG | - | chr1_2:35984959-35984978 | None:intergenic | 65.0% |
| TGGCCCACCTCAGCCCATGA+AGG | + | chr1_2:35984959-35984978 | Msa0068760:intron | 65.0% | |
| GGCCCACCTCAGCCCATGAA+GGG | + | chr1_2:35984960-35984979 | Msa0068760:intron | 65.0% | |
| ! | GAGCCCTTCATGGGCTGAGG+TGG | - | chr1_2:35984966-35984985 | None:intergenic | 65.0% |
| ! | GACAGTGGCGGAGCCCTTCA+TGG | - | chr1_2:35984976-35984995 | None:intergenic | 65.0% |
| GCTGTTGCGACCGCTGGAGT+TGG | + | chr1_2:35985760-35985779 | Msa0068760:intron | 65.0% | |
| ! | GCGGAGCCCTTCATGGGCTG+AGG | - | chr1_2:35984969-35984988 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 35983484 | 35987439 | 35983484 | ID=Msa0068760;Name=Msa0068760 |
| chr1_2 | mRNA | 35983484 | 35987439 | 35983484 | ID=Msa0068760-mRNA-1;Parent=Msa0068760;Name=Msa0068760-mRNA-1;_AED=0.08;_eAED=0.08;_QI=101|1|1|1|1|1|5|192|116 |
| chr1_2 | exon | 35983484 | 35983659 | 35983484 | ID=Msa0068760-mRNA-1:exon:11455;Parent=Msa0068760-mRNA-1 |
| chr1_2 | exon | 35986103 | 35986145 | 35986103 | ID=Msa0068760-mRNA-1:exon:11456;Parent=Msa0068760-mRNA-1 |
| chr1_2 | exon | 35986249 | 35986340 | 35986249 | ID=Msa0068760-mRNA-1:exon:11457;Parent=Msa0068760-mRNA-1 |
| chr1_2 | exon | 35986419 | 35986511 | 35986419 | ID=Msa0068760-mRNA-1:exon:11458;Parent=Msa0068760-mRNA-1 |
| chr1_2 | exon | 35987200 | 35987439 | 35987200 | ID=Msa0068760-mRNA-1:exon:11459;Parent=Msa0068760-mRNA-1 |
| chr1_2 | five_prime_UTR | 35983484 | 35983584 | 35983484 | ID=Msa0068760-mRNA-1:five_prime_utr;Parent=Msa0068760-mRNA-1 |
| chr1_2 | CDS | 35983585 | 35983659 | 35983585 | ID=Msa0068760-mRNA-1:cds;Parent=Msa0068760-mRNA-1 |
| chr1_2 | CDS | 35986103 | 35986145 | 35986103 | ID=Msa0068760-mRNA-1:cds;Parent=Msa0068760-mRNA-1 |
| chr1_2 | CDS | 35986249 | 35986340 | 35986249 | ID=Msa0068760-mRNA-1:cds;Parent=Msa0068760-mRNA-1 |
| chr1_2 | CDS | 35986419 | 35986511 | 35986419 | ID=Msa0068760-mRNA-1:cds;Parent=Msa0068760-mRNA-1 |
| chr1_2 | CDS | 35987200 | 35987247 | 35987200 | ID=Msa0068760-mRNA-1:cds;Parent=Msa0068760-mRNA-1 |
| chr1_2 | three_prime_UTR | 35987248 | 35987439 | 35987248 | ID=Msa0068760-mRNA-1:three_prime_utr;Parent=Msa0068760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
