AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0715050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0715050 MtrunA17_Chr5g0394811 92.520 254 19 0 6 259 225 478 5.37e-180 503
Msa0715050 MtrunA17_Chr5g0394861 81.890 254 46 0 6 259 118 371 1.43e-159 447
Msa0715050 MtrunA17_Chr5g0394891 81.496 254 47 0 6 259 116 369 2.15e-158 444
Msa0715050 MtrunA17_Chr5g0395841 79.600 250 51 0 9 258 121 370 3.69e-153 431
Msa0715050 MtrunA17_Chr5g0394841 75.591 254 62 0 6 259 118 371 1.19e-150 425
Msa0715050 MtrunA17_Chr5g0394751 77.291 251 51 1 9 259 115 359 1.02e-146 414
Msa0715050 MtrunA17_Chr5g0394771 74.803 254 58 1 6 259 144 391 3.32e-144 409
Msa0715050 MtrunA17_Chr3g0144001 62.550 251 90 1 9 259 117 363 5.80e-118 342
Msa0715050 MtrunA17_Chr4g0070561 52.045 269 112 5 5 258 122 388 3.71e-90 272
Msa0715050 MtrunA17_Chr5g0394801 69.681 188 30 1 64 251 25 185 4.54e-88 261
Msa0715050 MtrunA17_Chr5g0394791 62.500 88 33 0 3 90 106 193 2.62e-31 114
Msa0715050 MtrunA17_Chr3g0130471 72.093 43 12 0 84 126 1 43 6.71e-16 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0715050 AT1G76690.1 66.932 251 83 0 9 259 121 371 4.28e-130 373
Msa0715050 AT1G76680.1 66.135 251 85 0 9 259 119 369 1.96e-126 363
Msa0715050 AT1G76680.2 60.145 276 85 1 9 259 119 394 1.41e-120 350
Msa0715050 AT1G09400.2 63.830 235 79 1 3 237 37 265 1.86e-114 329
Msa0715050 AT1G09400.1 65.217 230 74 1 8 237 101 324 9.29e-114 330
Msa0715050 AT2G06050.2 46.377 276 121 5 5 258 115 385 8.10e-85 258
Msa0715050 AT2G06050.1 46.377 276 121 5 5 258 115 385 8.10e-85 258
Msa0715050 AT2G06050.3 46.377 276 121 5 5 258 115 385 8.10e-85 258
Msa0715050 AT1G17990.1 66.000 150 43 2 9 156 115 258 8.21e-70 216
Msa0715050 AT1G18020.1 66.000 150 43 2 9 156 115 258 8.21e-70 216
Msa0715050 AT1G17990.2 66.000 150 43 2 9 156 107 250 8.41e-70 216

Find 71 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCAACAATTTCCATTCT+TGG 0.190977 5_1:+7919701 None:intergenic
TCAATGTTGTAACTGAAAAT+AGG 0.197308 5_1:-7919586 Msa0715050:CDS
CCAGGAATTGGGACTTTATA+TGG 0.198742 5_1:-7919771 Msa0715050:CDS
TTAAAGTCATTGACAATATT+AGG 0.218480 5_1:+7920260 None:intergenic
CTCCTCTTAACAAGTATAAT+AGG 0.235128 5_1:-7919493 Msa0715050:CDS
GCAAATCTCTTTGGTAAATC+TGG 0.250222 5_1:+7919524 None:intergenic
TACACTTCTGATCCAATTCT+TGG 0.259451 5_1:-7919461 Msa0715050:CDS
AAATCGTTGTAGATTTGTTT+TGG 0.271540 5_1:-7919891 Msa0715050:CDS
GGCTTCCTTAATCGGTGTTC+CGG 0.273683 5_1:+7919171 None:intergenic
AGGGCAGATCTTATTGCTTA+TGG 0.315216 5_1:-7919566 Msa0715050:CDS
CCGATTAAGGAAGCCTTAAA+AGG 0.323704 5_1:-7919163 Msa0715050:three_prime_UTR
GTTAATGCCCTCAATAAATA+TGG 0.323996 5_1:-7919749 Msa0715050:CDS
GATATTGGTGCTTGCCCATT+TGG 0.334904 5_1:+7920377 None:intergenic
GACTCACCTTGGATAATATA+TGG 0.340462 5_1:+7919381 None:intergenic
AGACTCAAATCCCCAGGAAT+TGG 0.347553 5_1:-7919783 Msa0715050:CDS
CCATATAAAGTCCCAATTCC+TGG 0.348736 5_1:+7919771 None:intergenic
GTATCCCGGAACACCGATTA+AGG 0.358040 5_1:-7919176 Msa0715050:three_prime_UTR
AAACTACTCACACCACAAAT+TGG 0.358876 5_1:-7920344 Msa0715050:CDS
TGGTATTCTTTATTGTCATA+TGG 0.365038 5_1:-7919729 Msa0715050:CDS
GCATTAAGTGCAAATCTCTT+TGG 0.366211 5_1:+7919515 None:intergenic
GCTTCCTTAATCGGTGTTCC+GGG 0.373173 5_1:+7919172 None:intergenic
AGTTTGTCTGTTGAAGATAT+TGG 0.380484 5_1:+7920362 None:intergenic
TCCCTATTATACTTGTTAAG+AGG 0.383924 5_1:+7919491 None:intergenic
CTCATGGATCATTCAAGAAA+AGG 0.395876 5_1:+7919425 None:intergenic
GACTCAAATCCCCAGGAATT+GGG 0.398429 5_1:-7919782 Msa0715050:CDS
CAATGTTGTAACTGAAAATA+GGG 0.401221 5_1:-7919585 Msa0715050:CDS
TCTTCTGTTCTTAGCCTCCT+TGG 0.404793 5_1:+7920287 None:intergenic
TATACAGTTTGTCAACCAAA+TGG 0.412306 5_1:-7920392 Msa0715050:CDS
CCATTGAAAACCTTTCTCAT+TGG 0.416074 5_1:+7919650 None:intergenic
TGACAAACTGTATAGAATAT+AGG 0.417482 5_1:+7920401 None:intergenic
TCCTCTTAACAAGTATAATA+GGG 0.422103 5_1:-7919492 Msa0715050:CDS
AAAGAATACCATATTTATTG+AGG 0.434046 5_1:+7919741 None:intergenic
GTACCATCACCTCCAATTTG+TGG 0.439210 5_1:+7920332 None:intergenic
TAGTCGGTATAACCAAGAAT+TGG 0.464873 5_1:+7919449 None:intergenic
AACGACAGAACAGATGAATA+TGG 0.465016 5_1:-7919926 Msa0715050:CDS
TCATGGATCATTCAAGAAAA+GGG 0.465755 5_1:+7919426 None:intergenic
CATATAAAGTCCCAATTCCT+GGG 0.470185 5_1:+7919772 None:intergenic
TAGCTTGGCACCAATGAGAA+AGG 0.476232 5_1:-7919660 Msa0715050:CDS
CACAGATCAAGATCAATTGA+TGG 0.487173 5_1:-7919225 Msa0715050:three_prime_UTR
GAGATAGGTGCAGAAAGAGT+TGG 0.488228 5_1:-7919845 Msa0715050:CDS
AAGAATACCATATTTATTGA+GGG 0.490058 5_1:+7919742 None:intergenic
AACTGAATGTCATTATAGCT+TGG 0.490545 5_1:-7919675 Msa0715050:CDS
AACAGTATTAACTCTTGTTG+TGG 0.494878 5_1:-7919319 Msa0715050:three_prime_UTR
TCATATGGTGGAGCCAAGAA+TGG 0.499035 5_1:-7919714 Msa0715050:CDS
TTTGATGGGGTTGAAATCCA+TGG 0.500651 5_1:-7919992 Msa0715050:CDS
GAAGCTATTGCAAATGAGAT+AGG 0.513935 5_1:-7919860 Msa0715050:CDS
ATACAGTTTGTCAACCAAAT+GGG 0.515370 5_1:-7920391 Msa0715050:CDS
TCTGTTCTTAGCCTCCTTGG+TGG 0.522540 5_1:+7920290 None:intergenic
CTCCTTGGTGGTGTGAATTG+TGG 0.527123 5_1:+7920302 None:intergenic
CTTTCATGAATTGTTCAAGT+AGG 0.530510 5_1:+7919957 None:intergenic
GTTGAAATCCATGGAGCTCA+TGG 0.532007 5_1:-7919983 Msa0715050:CDS
GCAAGAAATGCTATTGAAGC+TGG 0.534377 5_1:-7920230 Msa0715050:intron
TATTCTTTATTGTCATATGG+TGG 0.548414 5_1:-7919726 Msa0715050:CDS
GATAATAGATAGTAATTGAT+CGG 0.555558 5_1:+7919104 None:intergenic
TATATAATATAGACTCACCT+TGG 0.558112 5_1:+7919370 None:intergenic
TCACCTTGGATGCTACCTCA+TGG 0.560233 5_1:+7919409 None:intergenic
GATCCATGAGGTAGCATCCA+AGG 0.560598 5_1:-7919412 Msa0715050:three_prime_UTR
ACACCACAAATTGGAGGTGA+TGG 0.561195 5_1:-7920335 Msa0715050:CDS
GGAGGCTATGAAAGACAAGA+TGG 0.576086 5_1:-7919611 Msa0715050:CDS
CTACTCACACCACAAATTGG+AGG 0.577932 5_1:-7920341 Msa0715050:CDS
AAACTTCCATATATTATCCA+AGG 0.584912 5_1:-7919387 Msa0715050:three_prime_UTR
GGTCATGTTAAACAGTATCC+CGG 0.586434 5_1:-7919190 Msa0715050:three_prime_UTR
TTGTGGAGACTCAAATCCCC+AGG 0.588708 5_1:-7919789 Msa0715050:CDS
AATATATGGAAGTTTCACCT+TGG 0.592715 5_1:+7919395 None:intergenic
GTAGGTAGCCATGAGCTCCA+TGG 0.595976 5_1:+7919975 None:intergenic
TCATTCAAGAAAAGGGTAGT+CGG 0.624730 5_1:+7919433 None:intergenic
GACAGAACAGATGAATATGG+TGG 0.658731 5_1:-7919923 Msa0715050:CDS
TACTGTTGACTGTTGAGACA+TGG 0.667866 5_1:+7919335 None:intergenic
ATATAAAGTCCCAATTCCTG+GGG 0.689378 5_1:+7919773 None:intergenic
CACAATTCACACCACCAAGG+AGG 0.702235 5_1:-7920301 Msa0715050:CDS
TGCCACAATTCACACCACCA+AGG 0.706911 5_1:-7920304 Msa0715050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAGTTTAATTACTATAAT+AGG - chr5_1:7919468-7919487 Msa0715050:CDS 10.0%
!!! TTTAGTTTAATTACTATAAT+AGG - chr5_1:7919468-7919487 Msa0715050:CDS 10.0%
!! AAATTGAATCAATTGAATTA+TGG + chr5_1:7919341-7919360 None:intergenic 15.0%
!!! TTGATACTTATATATTTTAC+AGG - chr5_1:7920272-7920291 Msa0715050:CDS 15.0%
!! AAATTGAATCAATTGAATTA+TGG + chr5_1:7919341-7919360 None:intergenic 15.0%
!!! TTGATACTTATATATTTTAC+AGG - chr5_1:7920272-7920291 Msa0715050:CDS 15.0%
!! TTAAAGTCATTGACAATATT+AGG + chr5_1:7919264-7919283 None:intergenic 20.0%
!! AGAGATAAAAATTGTTACAA+AGG - chr5_1:7919388-7919407 Msa0715050:three_prime_UTR 20.0%
!!! TTATCACCTTTTGAAAAATT+TGG - chr5_1:7919706-7919725 Msa0715050:CDS 20.0%
!! AAGAATACCATATTTATTGA+GGG + chr5_1:7919782-7919801 None:intergenic 20.0%
!! AAAGAATACCATATTTATTG+AGG + chr5_1:7919783-7919802 None:intergenic 20.0%
!! TTAAAGTCATTGACAATATT+AGG + chr5_1:7919264-7919283 None:intergenic 20.0%
!! AGAGATAAAAATTGTTACAA+AGG - chr5_1:7919388-7919407 Msa0715050:three_prime_UTR 20.0%
!!! TTATCACCTTTTGAAAAATT+TGG - chr5_1:7919706-7919725 Msa0715050:CDS 20.0%
!! AAGAATACCATATTTATTGA+GGG + chr5_1:7919782-7919801 None:intergenic 20.0%
!! AAAGAATACCATATTTATTG+AGG + chr5_1:7919783-7919802 None:intergenic 20.0%
! TGACAAACTGTATAGAATAT+AGG + chr5_1:7919123-7919142 None:intergenic 25.0%
!! AGACATTTTACATACTTGTA+TGG - chr5_1:7919492-7919511 Msa0715050:CDS 25.0%
!!! TGAAAATTGTAGGTTTTGAT+GGG - chr5_1:7919515-7919534 Msa0715050:CDS 25.0%
!! AAATCTACAACGATTTTCAA+GGG + chr5_1:7919626-7919645 None:intergenic 25.0%
!!! AAATCGTTGTAGATTTGTTT+TGG - chr5_1:7919630-7919649 Msa0715050:CDS 25.0%
!!! CAATCTCCAAATTTTTCAAA+AGG + chr5_1:7919715-7919734 None:intergenic 25.0%
! TTTGAAAAATTTGGAGATTG+TGG - chr5_1:7919715-7919734 Msa0715050:CDS 25.0%
! TGGTATTCTTTATTGTCATA+TGG - chr5_1:7919792-7919811 Msa0715050:CDS 25.0%
! TATTCTTTATTGTCATATGG+TGG - chr5_1:7919795-7919814 Msa0715050:CDS 25.0%
! TCAATGTTGTAACTGAAAAT+AGG - chr5_1:7919935-7919954 Msa0715050:CDS 25.0%
! CAATGTTGTAACTGAAAATA+GGG - chr5_1:7919936-7919955 Msa0715050:CDS 25.0%
! TCCTCTTAACAAGTATAATA+GGG - chr5_1:7920029-7920048 Msa0715050:intron 25.0%
! AAACTTCCATATATTATCCA+AGG - chr5_1:7920134-7920153 Msa0715050:intron 25.0%
! TATATAATATAGACTCACCT+TGG + chr5_1:7920154-7920173 None:intergenic 25.0%
! ATAAGAGACAAAAATGAAGT+TGG - chr5_1:7920231-7920250 Msa0715050:CDS 25.0%
! AATTGATGGAGAAACAAAAA+AGG - chr5_1:7920310-7920329 Msa0715050:CDS 25.0%
!! CAATGAAAAACTTCCTTTTA+AGG + chr5_1:7920374-7920393 None:intergenic 25.0%
! TGACAAACTGTATAGAATAT+AGG + chr5_1:7919123-7919142 None:intergenic 25.0%
!! AGACATTTTACATACTTGTA+TGG - chr5_1:7919492-7919511 Msa0715050:CDS 25.0%
!!! TGAAAATTGTAGGTTTTGAT+GGG - chr5_1:7919515-7919534 Msa0715050:CDS 25.0%
!! AAATCTACAACGATTTTCAA+GGG + chr5_1:7919626-7919645 None:intergenic 25.0%
!!! AAATCGTTGTAGATTTGTTT+TGG - chr5_1:7919630-7919649 Msa0715050:CDS 25.0%
!!! CAATCTCCAAATTTTTCAAA+AGG + chr5_1:7919715-7919734 None:intergenic 25.0%
! TTTGAAAAATTTGGAGATTG+TGG - chr5_1:7919715-7919734 Msa0715050:CDS 25.0%
! TGGTATTCTTTATTGTCATA+TGG - chr5_1:7919792-7919811 Msa0715050:CDS 25.0%
! TATTCTTTATTGTCATATGG+TGG - chr5_1:7919795-7919814 Msa0715050:CDS 25.0%
! TCAATGTTGTAACTGAAAAT+AGG - chr5_1:7919935-7919954 Msa0715050:CDS 25.0%
! CAATGTTGTAACTGAAAATA+GGG - chr5_1:7919936-7919955 Msa0715050:CDS 25.0%
! TCCTCTTAACAAGTATAATA+GGG - chr5_1:7920029-7920048 Msa0715050:intron 25.0%
! AAACTTCCATATATTATCCA+AGG - chr5_1:7920134-7920153 Msa0715050:intron 25.0%
! TATATAATATAGACTCACCT+TGG + chr5_1:7920154-7920173 None:intergenic 25.0%
! ATAAGAGACAAAAATGAAGT+TGG - chr5_1:7920231-7920250 Msa0715050:CDS 25.0%
! AATTGATGGAGAAACAAAAA+AGG - chr5_1:7920310-7920329 Msa0715050:CDS 25.0%
!! CAATGAAAAACTTCCTTTTA+AGG + chr5_1:7920374-7920393 None:intergenic 25.0%
TATACAGTTTGTCAACCAAA+TGG - chr5_1:7919129-7919148 Msa0715050:three_prime_UTR 30.0%
ATACAGTTTGTCAACCAAAT+GGG - chr5_1:7919130-7919149 Msa0715050:three_prime_UTR 30.0%
AGTTTGTCTGTTGAAGATAT+TGG + chr5_1:7919162-7919181 None:intergenic 30.0%
ACTTGTATGGTGAAAATTGT+AGG - chr5_1:7919505-7919524 Msa0715050:CDS 30.0%
!! GTGAAAATTGTAGGTTTTGA+TGG - chr5_1:7919514-7919533 Msa0715050:CDS 30.0%
!! GAAAATTGTAGGTTTTGATG+GGG - chr5_1:7919516-7919535 Msa0715050:CDS 30.0%
CTTTCATGAATTGTTCAAGT+AGG + chr5_1:7919567-7919586 None:intergenic 30.0%
! CAAATCTACAACGATTTTCA+AGG + chr5_1:7919627-7919646 None:intergenic 30.0%
GTTAATGCCCTCAATAAATA+TGG - chr5_1:7919772-7919791 Msa0715050:CDS 30.0%
TCATCAACAATTTCCATTCT+TGG + chr5_1:7919823-7919842 None:intergenic 30.0%
AACTGAATGTCATTATAGCT+TGG - chr5_1:7919846-7919865 Msa0715050:CDS 30.0%
! GGTTTTCAATGGAACTTTTA+TGG - chr5_1:7919882-7919901 Msa0715050:CDS 30.0%
! AATGGAACTTTTATGGTTAC+TGG - chr5_1:7919889-7919908 Msa0715050:CDS 30.0%
CTCCTCTTAACAAGTATAAT+AGG - chr5_1:7920028-7920047 Msa0715050:intron 30.0%
! TCCCTATTATACTTGTTAAG+AGG + chr5_1:7920033-7920052 None:intergenic 30.0%
TCATGGATCATTCAAGAAAA+GGG + chr5_1:7920098-7920117 None:intergenic 30.0%
AATATATGGAAGTTTCACCT+TGG + chr5_1:7920129-7920148 None:intergenic 30.0%
AACAGTATTAACTCTTGTTG+TGG - chr5_1:7920202-7920221 Msa0715050:intron 30.0%
! AAAGGAAGTTTTTCATTGAG+AGG - chr5_1:7920376-7920395 Msa0715050:CDS 30.0%
! AAGGAAGTTTTTCATTGAGA+GGG - chr5_1:7920377-7920396 Msa0715050:CDS 30.0%
TATACAGTTTGTCAACCAAA+TGG - chr5_1:7919129-7919148 Msa0715050:three_prime_UTR 30.0%
ATACAGTTTGTCAACCAAAT+GGG - chr5_1:7919130-7919149 Msa0715050:three_prime_UTR 30.0%
AGTTTGTCTGTTGAAGATAT+TGG + chr5_1:7919162-7919181 None:intergenic 30.0%
ACTTGTATGGTGAAAATTGT+AGG - chr5_1:7919505-7919524 Msa0715050:CDS 30.0%
!! GTGAAAATTGTAGGTTTTGA+TGG - chr5_1:7919514-7919533 Msa0715050:CDS 30.0%
!! GAAAATTGTAGGTTTTGATG+GGG - chr5_1:7919516-7919535 Msa0715050:CDS 30.0%
CTTTCATGAATTGTTCAAGT+AGG + chr5_1:7919567-7919586 None:intergenic 30.0%
! CAAATCTACAACGATTTTCA+AGG + chr5_1:7919627-7919646 None:intergenic 30.0%
GTTAATGCCCTCAATAAATA+TGG - chr5_1:7919772-7919791 Msa0715050:CDS 30.0%
TCATCAACAATTTCCATTCT+TGG + chr5_1:7919823-7919842 None:intergenic 30.0%
AACTGAATGTCATTATAGCT+TGG - chr5_1:7919846-7919865 Msa0715050:CDS 30.0%
! GGTTTTCAATGGAACTTTTA+TGG - chr5_1:7919882-7919901 Msa0715050:CDS 30.0%
! AATGGAACTTTTATGGTTAC+TGG - chr5_1:7919889-7919908 Msa0715050:CDS 30.0%
CTCCTCTTAACAAGTATAAT+AGG - chr5_1:7920028-7920047 Msa0715050:intron 30.0%
! TCCCTATTATACTTGTTAAG+AGG + chr5_1:7920033-7920052 None:intergenic 30.0%
TCATGGATCATTCAAGAAAA+GGG + chr5_1:7920098-7920117 None:intergenic 30.0%
AATATATGGAAGTTTCACCT+TGG + chr5_1:7920129-7920148 None:intergenic 30.0%
AACAGTATTAACTCTTGTTG+TGG - chr5_1:7920202-7920221 Msa0715050:intron 30.0%
! AAAGGAAGTTTTTCATTGAG+AGG - chr5_1:7920376-7920395 Msa0715050:CDS 30.0%
! AAGGAAGTTTTTCATTGAGA+GGG - chr5_1:7920377-7920396 Msa0715050:CDS 30.0%
AAACTACTCACACCACAAAT+TGG - chr5_1:7919177-7919196 Msa0715050:three_prime_UTR 35.0%
AACGACAGAACAGATGAATA+TGG - chr5_1:7919595-7919614 Msa0715050:CDS 35.0%
GAAGCTATTGCAAATGAGAT+AGG - chr5_1:7919661-7919680 Msa0715050:CDS 35.0%
ATATAAAGTCCCAATTCCTG+GGG + chr5_1:7919751-7919770 None:intergenic 35.0%
CATATAAAGTCCCAATTCCT+GGG + chr5_1:7919752-7919771 None:intergenic 35.0%
CCATTGAAAACCTTTCTCAT+TGG + chr5_1:7919874-7919893 None:intergenic 35.0%
! CCAATGAGAAAGGTTTTCAA+TGG - chr5_1:7919871-7919890 Msa0715050:CDS 35.0%
GCAAATCTCTTTGGTAAATC+TGG + chr5_1:7920000-7920019 None:intergenic 35.0%
GCATTAAGTGCAAATCTCTT+TGG + chr5_1:7920009-7920028 None:intergenic 35.0%
TACACTTCTGATCCAATTCT+TGG - chr5_1:7920060-7920079 Msa0715050:intron 35.0%
TAGTCGGTATAACCAAGAAT+TGG + chr5_1:7920075-7920094 None:intergenic 35.0%
TCATTCAAGAAAAGGGTAGT+CGG + chr5_1:7920091-7920110 None:intergenic 35.0%
CTCATGGATCATTCAAGAAA+AGG + chr5_1:7920099-7920118 None:intergenic 35.0%
! CTTTTCTTGAATGATCCATG+AGG - chr5_1:7920097-7920116 Msa0715050:intron 35.0%
GACTCACCTTGGATAATATA+TGG + chr5_1:7920143-7920162 None:intergenic 35.0%
CACAGATCAAGATCAATTGA+TGG - chr5_1:7920296-7920315 Msa0715050:CDS 35.0%
!!! CCTTTTAAGGCTTCCTTAAT+CGG + chr5_1:7920361-7920380 None:intergenic 35.0%
! AGGAAGTTTTTCATTGAGAG+GGG - chr5_1:7920378-7920397 Msa0715050:CDS 35.0%
AAACTACTCACACCACAAAT+TGG - chr5_1:7919177-7919196 Msa0715050:three_prime_UTR 35.0%
AACGACAGAACAGATGAATA+TGG - chr5_1:7919595-7919614 Msa0715050:CDS 35.0%
GAAGCTATTGCAAATGAGAT+AGG - chr5_1:7919661-7919680 Msa0715050:CDS 35.0%
ATATAAAGTCCCAATTCCTG+GGG + chr5_1:7919751-7919770 None:intergenic 35.0%
CATATAAAGTCCCAATTCCT+GGG + chr5_1:7919752-7919771 None:intergenic 35.0%
CCATTGAAAACCTTTCTCAT+TGG + chr5_1:7919874-7919893 None:intergenic 35.0%
! CCAATGAGAAAGGTTTTCAA+TGG - chr5_1:7919871-7919890 Msa0715050:CDS 35.0%
GCAAATCTCTTTGGTAAATC+TGG + chr5_1:7920000-7920019 None:intergenic 35.0%
GCATTAAGTGCAAATCTCTT+TGG + chr5_1:7920009-7920028 None:intergenic 35.0%
TACACTTCTGATCCAATTCT+TGG - chr5_1:7920060-7920079 Msa0715050:intron 35.0%
TAGTCGGTATAACCAAGAAT+TGG + chr5_1:7920075-7920094 None:intergenic 35.0%
TCATTCAAGAAAAGGGTAGT+CGG + chr5_1:7920091-7920110 None:intergenic 35.0%
CTCATGGATCATTCAAGAAA+AGG + chr5_1:7920099-7920118 None:intergenic 35.0%
! CTTTTCTTGAATGATCCATG+AGG - chr5_1:7920097-7920116 Msa0715050:intron 35.0%
GACTCACCTTGGATAATATA+TGG + chr5_1:7920143-7920162 None:intergenic 35.0%
CACAGATCAAGATCAATTGA+TGG - chr5_1:7920296-7920315 Msa0715050:CDS 35.0%
!!! CCTTTTAAGGCTTCCTTAAT+CGG + chr5_1:7920361-7920380 None:intergenic 35.0%
! AGGAAGTTTTTCATTGAGAG+GGG - chr5_1:7920378-7920397 Msa0715050:CDS 35.0%
GCAAGAAATGCTATTGAAGC+TGG - chr5_1:7919291-7919310 Msa0715050:three_prime_UTR 40.0%
TTTGATGGGGTTGAAATCCA+TGG - chr5_1:7919529-7919548 Msa0715050:CDS 40.0%
GACAGAACAGATGAATATGG+TGG - chr5_1:7919598-7919617 Msa0715050:CDS 40.0%
CCATATAAAGTCCCAATTCC+TGG + chr5_1:7919753-7919772 None:intergenic 40.0%
CCAGGAATTGGGACTTTATA+TGG - chr5_1:7919750-7919769 Msa0715050:CDS 40.0%
! GGAACTTTTATGGTTACTGG+AGG - chr5_1:7919892-7919911 Msa0715050:CDS 40.0%
AGGGCAGATCTTATTGCTTA+TGG - chr5_1:7919955-7919974 Msa0715050:CDS 40.0%
! TACTGTTGACTGTTGAGACA+TGG + chr5_1:7920189-7920208 None:intergenic 40.0%
GGTCATGTTAAACAGTATCC+CGG - chr5_1:7920331-7920350 Msa0715050:CDS 40.0%
CCGATTAAGGAAGCCTTAAA+AGG - chr5_1:7920358-7920377 Msa0715050:CDS 40.0%
! AAGTTTTTCATTGAGAGGGG+TGG - chr5_1:7920381-7920400 Msa0715050:CDS 40.0%
GCAAGAAATGCTATTGAAGC+TGG - chr5_1:7919291-7919310 Msa0715050:three_prime_UTR 40.0%
TTTGATGGGGTTGAAATCCA+TGG - chr5_1:7919529-7919548 Msa0715050:CDS 40.0%
GACAGAACAGATGAATATGG+TGG - chr5_1:7919598-7919617 Msa0715050:CDS 40.0%
CCATATAAAGTCCCAATTCC+TGG + chr5_1:7919753-7919772 None:intergenic 40.0%
CCAGGAATTGGGACTTTATA+TGG - chr5_1:7919750-7919769 Msa0715050:CDS 40.0%
! GGAACTTTTATGGTTACTGG+AGG - chr5_1:7919892-7919911 Msa0715050:CDS 40.0%
AGGGCAGATCTTATTGCTTA+TGG - chr5_1:7919955-7919974 Msa0715050:CDS 40.0%
! TACTGTTGACTGTTGAGACA+TGG + chr5_1:7920189-7920208 None:intergenic 40.0%
GGTCATGTTAAACAGTATCC+CGG - chr5_1:7920331-7920350 Msa0715050:CDS 40.0%
CCGATTAAGGAAGCCTTAAA+AGG - chr5_1:7920358-7920377 Msa0715050:CDS 40.0%
! AAGTTTTTCATTGAGAGGGG+TGG - chr5_1:7920381-7920400 Msa0715050:CDS 40.0%
! GATATTGGTGCTTGCCCATT+TGG + chr5_1:7919147-7919166 None:intergenic 45.0%
CTACTCACACCACAAATTGG+AGG - chr5_1:7919180-7919199 Msa0715050:three_prime_UTR 45.0%
ACACCACAAATTGGAGGTGA+TGG - chr5_1:7919186-7919205 Msa0715050:three_prime_UTR 45.0%
GTACCATCACCTCCAATTTG+TGG + chr5_1:7919192-7919211 None:intergenic 45.0%
TCTTCTGTTCTTAGCCTCCT+TGG + chr5_1:7919237-7919256 None:intergenic 45.0%
GTTGAAATCCATGGAGCTCA+TGG - chr5_1:7919538-7919557 Msa0715050:CDS 45.0%
GAGATAGGTGCAGAAAGAGT+TGG - chr5_1:7919676-7919695 Msa0715050:CDS 45.0%
AGACTCAAATCCCCAGGAAT+TGG - chr5_1:7919738-7919757 Msa0715050:CDS 45.0%
GACTCAAATCCCCAGGAATT+GGG - chr5_1:7919739-7919758 Msa0715050:CDS 45.0%
! TCATATGGTGGAGCCAAGAA+TGG - chr5_1:7919807-7919826 Msa0715050:CDS 45.0%
TAGCTTGGCACCAATGAGAA+AGG - chr5_1:7919861-7919880 Msa0715050:CDS 45.0%
GGAGGCTATGAAAGACAAGA+TGG - chr5_1:7919910-7919929 Msa0715050:CDS 45.0%
! GATATTGGTGCTTGCCCATT+TGG + chr5_1:7919147-7919166 None:intergenic 45.0%
CTACTCACACCACAAATTGG+AGG - chr5_1:7919180-7919199 Msa0715050:three_prime_UTR 45.0%
ACACCACAAATTGGAGGTGA+TGG - chr5_1:7919186-7919205 Msa0715050:three_prime_UTR 45.0%
GTACCATCACCTCCAATTTG+TGG + chr5_1:7919192-7919211 None:intergenic 45.0%
TCTTCTGTTCTTAGCCTCCT+TGG + chr5_1:7919237-7919256 None:intergenic 45.0%
GTTGAAATCCATGGAGCTCA+TGG - chr5_1:7919538-7919557 Msa0715050:CDS 45.0%
GAGATAGGTGCAGAAAGAGT+TGG - chr5_1:7919676-7919695 Msa0715050:CDS 45.0%
AGACTCAAATCCCCAGGAAT+TGG - chr5_1:7919738-7919757 Msa0715050:CDS 45.0%
GACTCAAATCCCCAGGAATT+GGG - chr5_1:7919739-7919758 Msa0715050:CDS 45.0%
! TCATATGGTGGAGCCAAGAA+TGG - chr5_1:7919807-7919826 Msa0715050:CDS 45.0%
TAGCTTGGCACCAATGAGAA+AGG - chr5_1:7919861-7919880 Msa0715050:CDS 45.0%
GGAGGCTATGAAAGACAAGA+TGG - chr5_1:7919910-7919929 Msa0715050:CDS 45.0%
TGCCACAATTCACACCACCA+AGG - chr5_1:7919217-7919236 Msa0715050:three_prime_UTR 50.0%
!! CTCCTTGGTGGTGTGAATTG+TGG + chr5_1:7919222-7919241 None:intergenic 50.0%
CACAATTCACACCACCAAGG+AGG - chr5_1:7919220-7919239 Msa0715050:three_prime_UTR 50.0%
TCTGTTCTTAGCCTCCTTGG+TGG + chr5_1:7919234-7919253 None:intergenic 50.0%
TTGTGGAGACTCAAATCCCC+AGG - chr5_1:7919732-7919751 Msa0715050:CDS 50.0%
GATCCATGAGGTAGCATCCA+AGG - chr5_1:7920109-7920128 Msa0715050:intron 50.0%
TCACCTTGGATGCTACCTCA+TGG + chr5_1:7920115-7920134 None:intergenic 50.0%
! GTATCCCGGAACACCGATTA+AGG - chr5_1:7920345-7920364 Msa0715050:CDS 50.0%
! GCTTCCTTAATCGGTGTTCC+GGG + chr5_1:7920352-7920371 None:intergenic 50.0%
! GGCTTCCTTAATCGGTGTTC+CGG + chr5_1:7920353-7920372 None:intergenic 50.0%
TGCCACAATTCACACCACCA+AGG - chr5_1:7919217-7919236 Msa0715050:three_prime_UTR 50.0%
!! CTCCTTGGTGGTGTGAATTG+TGG + chr5_1:7919222-7919241 None:intergenic 50.0%
CACAATTCACACCACCAAGG+AGG - chr5_1:7919220-7919239 Msa0715050:three_prime_UTR 50.0%
TCTGTTCTTAGCCTCCTTGG+TGG + chr5_1:7919234-7919253 None:intergenic 50.0%
TTGTGGAGACTCAAATCCCC+AGG - chr5_1:7919732-7919751 Msa0715050:CDS 50.0%
GATCCATGAGGTAGCATCCA+AGG - chr5_1:7920109-7920128 Msa0715050:intron 50.0%
TCACCTTGGATGCTACCTCA+TGG + chr5_1:7920115-7920134 None:intergenic 50.0%
! GTATCCCGGAACACCGATTA+AGG - chr5_1:7920345-7920364 Msa0715050:CDS 50.0%
! GCTTCCTTAATCGGTGTTCC+GGG + chr5_1:7920352-7920371 None:intergenic 50.0%
! GGCTTCCTTAATCGGTGTTC+CGG + chr5_1:7920353-7920372 None:intergenic 50.0%
GTAGGTAGCCATGAGCTCCA+TGG + chr5_1:7919549-7919568 None:intergenic 55.0%
GTAGGTAGCCATGAGCTCCA+TGG + chr5_1:7919549-7919568 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 7919117 7920426 7919117 ID=Msa0715050;Name=Msa0715050
chr5_1 mRNA 7919117 7920426 7919117 ID=Msa0715050-mRNA-1;Parent=Msa0715050;Name=Msa0715050-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|1|0.5|1|1|1|2|316|259
chr5_1 exon 7919117 7920016 7919117 ID=Msa0715050-mRNA-1:exon:3312;Parent=Msa0715050-mRNA-1
chr5_1 exon 7920231 7920426 7920231 ID=Msa0715050-mRNA-1:exon:3311;Parent=Msa0715050-mRNA-1
chr5_1 CDS 7920231 7920426 7920231 ID=Msa0715050-mRNA-1:cds;Parent=Msa0715050-mRNA-1
chr5_1 CDS 7919433 7920016 7919433 ID=Msa0715050-mRNA-1:cds;Parent=Msa0715050-mRNA-1
chr5_1 three_prime_UTR 7919117 7919432 7919117 ID=Msa0715050-mRNA-1:three_prime_utr;Parent=Msa0715050-mRNA-1
Gene Sequence

>Msa0715050

ATGCCTATATTCTATACAGTTTGTCAACCAAATGGGCAAGCACCAATATCTTCAACAGACAAACTACTCACACCACAAATTGGAGGTGATGGTACTGAAATGCCACAATTCACACCACCAAGGAGGCTAAGAACAGAAGAAATTCCTAATATTGTCAATGACTTTAAACTTGCTGCAAGAAATGCTATTGAAGCTGGTTTTGATGGGGTTGAAATCCATGGAGCTCATGGCTACCTACTTGAACAATTCATGAAAGATAAAGCGAACGACAGAACAGATGAATATGGTGGAACCCTTGAAAATCGTTGTAGATTTGTTTTGGAAATTGTTGAAGCTATTGCAAATGAGATAGGTGCAGAAAGAGTTGGAATAAAATTATCACCTTTTGAAAAATTTGGAGATTGTGGAGACTCAAATCCCCAGGAATTGGGACTTTATATGGTTAATGCCCTCAATAAATATGGTATTCTTTATTGTCATATGGTGGAGCCAAGAATGGAAATTGTTGATGAAAAAACTGAATGTCATTATAGCTTGGCACCAATGAGAAAGGTTTTCAATGGAACTTTTATGGTTACTGGAGGCTATGAAAGACAAGATGGAATCAATGTTGTAACTGAAAATAGGGCAGATCTTATTGCTTATGGTCGTTTGTTCATATCAAATCCAGATTTACCAAAGAGATTTGCACTTAATGCTCCTCTTAACAAGTATAATAGGGAGACATTCTACACTTCTGATCCAATTCTTGGTTATACCGACTACCCTTTTCTTGAATGA

Protein sequence

>Msa0715050

MPIFYTVCQPNGQAPISSTDKLLTPQIGGDGTEMPQFTPPRRLRTEEIPNIVNDFKLAARNAIEAGFDGVEIHGAHGYLLEQFMKDKANDRTDEYGGTLENRCRFVLEIVEAIANEIGAERVGIKLSPFEKFGDCGDSNPQELGLYMVNALNKYGILYCHMVEPRMEIVDEKTECHYSLAPMRKVFNGTFMVTGGYERQDGINVVTENRADLIAYGRLFISNPDLPKRFALNAPLNKYNRETFYTSDPILGYTDYPFLE*