AlfalfaGEDB | Msa0715050

M. sativa cultivar zhongmu-4 / Msa0715050

KEGG: K05894
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114
PFAM: PF00724.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0715050	XP_003610763.3	91.829	257	21	0	3	259	92	348	9.20e-177	500

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0715050	sp\|Q9XG54\|OPR1_SOLLC	70.916	251	73	0	9	259	123	373	7.36e-136	390

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0715050	G7K3R8	91.829	257	21	0	3	259	92	348	4.40e-177	500

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0715050	0.826171	3.139697e-54	-8.615850e-47
Msa0000220	Msa0715050	0.842580	2.370482e-58	-8.615850e-47
Msa0007160	Msa0715050	0.810283	1.244832e-50	-8.615850e-47
Msa0011910	Msa0715050	0.833323	5.695578e-56	-8.615850e-47
Msa0012460	Msa0715050	0.807575	4.728151e-50	-8.615850e-47
Msa0017980	Msa0715050	0.828087	1.092463e-54	-8.615850e-47
Msa0018010	Msa0715050	0.806291	8.835485e-50	-8.615850e-47
Msa0021240	Msa0715050	0.817402	3.359190e-52	-8.615850e-47
Msa0021710	Msa0715050	0.815871	7.401739e-52	-8.615850e-47
Msa0022230	Msa0715050	0.802073	6.669556e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0715050	MtrunA17_Chr5g0394811	92.520	254	19	0	6	259	225	478	5.37e-180	503
Msa0715050	MtrunA17_Chr5g0394861	81.890	254	46	0	6	259	118	371	1.43e-159	447
Msa0715050	MtrunA17_Chr5g0394891	81.496	254	47	0	6	259	116	369	2.15e-158	444
Msa0715050	MtrunA17_Chr5g0395841	79.600	250	51	0	9	258	121	370	3.69e-153	431
Msa0715050	MtrunA17_Chr5g0394841	75.591	254	62	0	6	259	118	371	1.19e-150	425
Msa0715050	MtrunA17_Chr5g0394751	77.291	251	51	1	9	259	115	359	1.02e-146	414
Msa0715050	MtrunA17_Chr5g0394771	74.803	254	58	1	6	259	144	391	3.32e-144	409
Msa0715050	MtrunA17_Chr3g0144001	62.550	251	90	1	9	259	117	363	5.80e-118	342
Msa0715050	MtrunA17_Chr4g0070561	52.045	269	112	5	5	258	122	388	3.71e-90	272
Msa0715050	MtrunA17_Chr5g0394801	69.681	188	30	1	64	251	25	185	4.54e-88	261

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0715050	AT1G76690.1	66.932	251	83	0	9	259	121	371	4.28e-130	373
Msa0715050	AT1G76680.1	66.135	251	85	0	9	259	119	369	1.96e-126	363
Msa0715050	AT1G76680.2	60.145	276	85	1	9	259	119	394	1.41e-120	350
Msa0715050	AT1G09400.2	63.830	235	79	1	3	237	37	265	1.86e-114	329
Msa0715050	AT1G09400.1	65.217	230	74	1	8	237	101	324	9.29e-114	330
Msa0715050	AT2G06050.2	46.377	276	121	5	5	258	115	385	8.10e-85	258
Msa0715050	AT2G06050.1	46.377	276	121	5	5	258	115	385	8.10e-85	258
Msa0715050	AT2G06050.3	46.377	276	121	5	5	258	115	385	8.10e-85	258
Msa0715050	AT1G17990.1	66.000	150	43	2	9	156	115	258	8.21e-70	216
Msa0715050	AT1G18020.1	66.000	150	43	2	9	156	115	258	8.21e-70	216

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Find 71 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTACTCACACCACAAAT+TGG	0.358876	5_1:-7920344	Msa0715050:CDS
AAACTTCCATATATTATCCA+AGG	0.584912	5_1:-7919387	Msa0715050:three_prime_UTR
AAAGAATACCATATTTATTG+AGG	0.434046	5_1:+7919741	None:intergenic
AAATCGTTGTAGATTTGTTT+TGG	0.271540	5_1:-7919891	Msa0715050:CDS
AACAGTATTAACTCTTGTTG+TGG	0.494878	5_1:-7919319	Msa0715050:three_prime_UTR
AACGACAGAACAGATGAATA+TGG	0.465016	5_1:-7919926	Msa0715050:CDS
AACTGAATGTCATTATAGCT+TGG	0.490545	5_1:-7919675	Msa0715050:CDS
AAGAATACCATATTTATTGA+GGG	0.490058	5_1:+7919742	None:intergenic
AATATATGGAAGTTTCACCT+TGG	0.592715	5_1:+7919395	None:intergenic
ACACCACAAATTGGAGGTGA+TGG	0.561195	5_1:-7920335	Msa0715050:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATACAGTTTGTCAACCAAA+TGG	-	chr5_1:7919129-7919148	Msa0715050:three_prime_UTR	30.0%
ATACAGTTTGTCAACCAAAT+GGG	-	chr5_1:7919130-7919149	Msa0715050:three_prime_UTR	30.0%
AGTTTGTCTGTTGAAGATAT+TGG	+	chr5_1:7919162-7919181	None:intergenic	30.0%
ACTTGTATGGTGAAAATTGT+AGG	-	chr5_1:7919505-7919524	Msa0715050:CDS	30.0%
CTTTCATGAATTGTTCAAGT+AGG	+	chr5_1:7919567-7919586	None:intergenic	30.0%
GTTAATGCCCTCAATAAATA+TGG	-	chr5_1:7919772-7919791	Msa0715050:CDS	30.0%
TCATCAACAATTTCCATTCT+TGG	+	chr5_1:7919823-7919842	None:intergenic	30.0%
AACTGAATGTCATTATAGCT+TGG	-	chr5_1:7919846-7919865	Msa0715050:CDS	30.0%
CTCCTCTTAACAAGTATAAT+AGG	-	chr5_1:7920028-7920047	Msa0715050:intron	30.0%
TCATGGATCATTCAAGAAAA+GGG	+	chr5_1:7920098-7920117	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	7919117	7920426	7919117	ID=Msa0715050;Name=Msa0715050
chr5_1	mRNA	7919117	7920426	7919117	ID=Msa0715050-mRNA-1;Parent=Msa0715050;Name=Msa0715050-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0\|1\|0.5\|1\|1\|1\|2\|316\|259
chr5_1	exon	7919117	7920016	7919117	ID=Msa0715050-mRNA-1:exon:3312;Parent=Msa0715050-mRNA-1
chr5_1	exon	7920231	7920426	7920231	ID=Msa0715050-mRNA-1:exon:3311;Parent=Msa0715050-mRNA-1
chr5_1	CDS	7920231	7920426	7920231	ID=Msa0715050-mRNA-1:cds;Parent=Msa0715050-mRNA-1
chr5_1	CDS	7919433	7920016	7919433	ID=Msa0715050-mRNA-1:cds;Parent=Msa0715050-mRNA-1
chr5_1	three_prime_UTR	7919117	7919432	7919117	ID=Msa0715050-mRNA-1:three_prime_utr;Parent=Msa0715050-mRNA-1

Gene Sequence

>Msa0715050

ATGCCTATATTCTATACAGTTTGTCAACCAAATGGGCAAGCACCAATATCTTCAACAGACAAACTACTCACACCACAAATTGGAGGTGATGGTACTGAAATGCCACAATTCACACCACCAAGGAGGCTAAGAACAGAAGAAATTCCTAATATTGTCAATGACTTTAAACTTGCTGCAAGAAATGCTATTGAAGCTGGTTTTGATGGGGTTGAAATCCATGGAGCTCATGGCTACCTACTTGAACAATTCATGAAAGATAAAGCGAACGACAGAACAGATGAATATGGTGGAACCCTTGAAAATCGTTGTAGATTTGTTTTGGAAATTGTTGAAGCTATTGCAAATGAGATAGGTGCAGAAAGAGTTGGAATAAAATTATCACCTTTTGAAAAATTTGGAGATTGTGGAGACTCAAATCCCCAGGAATTGGGACTTTATATGGTTAATGCCCTCAATAAATATGGTATTCTTTATTGTCATATGGTGGAGCCAAGAATGGAAATTGTTGATGAAAAAACTGAATGTCATTATAGCTTGGCACCAATGAGAAAGGTTTTCAATGGAACTTTTATGGTTACTGGAGGCTATGAAAGACAAGATGGAATCAATGTTGTAACTGAAAATAGGGCAGATCTTATTGCTTATGGTCGTTTGTTCATATCAAATCCAGATTTACCAAAGAGATTTGCACTTAATGCTCCTCTTAACAAGTATAATAGGGAGACATTCTACACTTCTGATCCAATTCTTGGTTATACCGACTACCCTTTTCTTGAATGA

Protein sequence

>Msa0715050

MPIFYTVCQPNGQAPISSTDKLLTPQIGGDGTEMPQFTPPRRLRTEEIPNIVNDFKLAARNAIEAGFDGVEIHGAHGYLLEQFMKDKANDRTDEYGGTLENRCRFVLEIVEAIANEIGAERVGIKLSPFEKFGDCGDSNPQELGLYMVNALNKYGILYCHMVEPRMEIVDEKTECHYSLAPMRKVFNGTFMVTGGYERQDGINVVTENRADLIAYGRLFISNPDLPKRFALNAPLNKYNRETFYTSDPILGYTDYPFLE*